Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold733 Parameters: 2 7 7 80 10 50 500 Length: 1111331

Tables:   1   2   3   

This is table  2  of  3  ( 320 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
388591--389079
246
2.0
245
99
0
960
21
18
28
31
1.97
389059--389353
158
1.9
157
84
4
396
25
20
21
32
1.98
398179--398203
8
3.1
8
100
0
50
28
0
12
60
1.32
401482--402304
346
2.4
342
83
8
1032
30
18
18
32
1.95
401482--402304
172
4.8
173
78
11
875
30
18
18
32
1.95
404175--404225
20
2.7
19
79
8
59
39
19
11
29
1.87
407153--407240
44
2.0
44
97
0
167
17
21
11
50
1.77
410395--410741
58
6.0
58
94
0
586
35
17
21
26
1.95
410425--410852
58
7.4
58
86
3
215
35
16
20
27
1.93
410395--410798
174
2.3
174
87
0
486
35
16
20
26
1.94
410917--411099
58
3.3
57
79
8
173
31
13
21
33
1.92
410918--411120
58
3.6
57
79
5
164
32
11
22
33
1.90
411456--411501
2
23.0
2
100
0
92
50
0
50
0
1.00
417970--418017
4
12.5
4
91
8
82
25
25
0
50
1.50
417971--418015
22
2.0
22
100
0
90
22
26
0
51
1.49
417975--418011
18
2.1
18
100
0
74
21
27
0
51
1.48
417973--418022
22
2.3
22
92
0
82
24
24
2
50
1.60
424215--424270
16
3.4
17
72
20
55
32
26
17
23
1.97
424204--424475
34
7.9
34
77
7
237
34
22
19
23
1.96
424213--424265
18
3.1
18
71
20
58
30
26
18
24
1.98
431425--431458
15
2.4
14
90
5
50
79
17
0
2
0.86
432299--432406
30
3.6
30
97
0
189
30
32
22
14
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432390--432421
15
2.1
15
100
0
64
31
28
28
12
1.93
432360--432454
45
2.1
45
92
0
154
32
31
21
14
1.93
432405--432476
30
2.4
30
83
4
92
34
31
18
15
1.92
432330--432476
75
2.0
75
88
0
222
33
31
20
14
1.92
432300--432505
105
2.0
105
85
0
277
31
32
19
16
1.94
432480--432536
30
1.9
29
82
3
69
24
36
15
22
1.94
433085--433149
2
33.5
2
81
6
80
53
0
46
0
1.00
433088--433149
23
2.7
23
100
0
124
54
0
45
0
0.99
436963--437012
4
12.8
4
87
4
66
0
42
26
32
1.56
436969--437015
12
3.9
12
88
0
76
0
40
25
34
1.56
446044--446077
17
2.0
17
88
11
52
47
14
14
23
1.82
454828--454862
14
2.5
14
90
0
52
25
25
11
37
1.90
468194--468233
11
3.7
11
86
3
55
35
10
30
25
1.88
485085--485126
2
21.0
2
100
0
84
0
50
0
50
1.00
486107--486243
70
1.9
74
91
8
228
46
11
9
32
1.72
486286--486314
5
5.8
5
100
0
58
0
0
17
82
0.66
493038--493159
34
3.6
34
72
12
108
39
13
20
26
1.90
500149--500241
46
2.0
46
100
0
186
46
15
10
27
1.79
500159--500229
23
3.2
21
64
21
54
45
16
11
26
1.82
508907--508974
31
2.2
31
100
0
136
16
32
8
42
1.79
512997--513042
1
46.0
1
91
0
74
0
0
95
2
0.18
521481--521528
2
24.0
2
100
0
96
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522157--522211
2
27.5
2
96
0
101
50
0
49
0
1.00
523983--524102
35
3.4
35
95
0
204
25
20
18
35
1.95
526153--526177
1
25.0
1
100
0
50
0
100
0
0
0.00
531190--531384
42
4.6
42
94
0
336
27
9
20
43
1.82
532534--532636
54
1.9
54
91
0
170
26
12
8
52
1.68
536129--536873
171
4.4
164
77
7
653
30
18
19
31
1.95
536129--536873
335
2.2
336
83
5
900
30
18
19
31
1.95
545814--546455
156
4.0
153
73
17
484
31
18
16
34
1.93
546025--546463
167
2.7
158
79
5
414
32
16
17
33
1.93
545689--546480
327
2.4
316
81
8
862
31
18
16
33
1.94
551029--551098
21
3.3
21
75
0
77
37
20
11
31
1.88
554479--554555
4
19.2
4
100
0
154
49
0
24
25
1.51
555759--555818
29
2.1
29
93
0
102
18
20
15
46
1.84
567023--567114
4
23.0
4
95
4
168
50
0
25
25
1.50
583649--583707
2
30.0
2
96
3
111
0
50
0
49
1.00
584730--584897
28
6.0
28
96
2
311
29
29
14
27
1.95
585040--585081
20
2.1
20
95
0
75
38
16
9
35
1.81
589297--589714
165
2.5
160
81
7
484
34
15
24
25
1.95
616139--616180
21
1.9
23
90
9
70
38
9
30
21
1.85
624530--624572
12
3.6
12
81
12
52
0
37
27
34
1.57
624727--624760
1
34.0
1
87
0
50
94
0
5
0
0.32
624728--624761
17
2.0
17
94
0
59
91
0
8
0
0.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
638515--638578
32
2.0
32
87
0
92
40
20
9
29
1.84
639819--639850
16
2.0
16
93
0
55
25
15
25
34
1.95
640353--640805
166
2.7
165
87
3
642
25
24
16
33
1.95
641404--641692
105
2.8
105
97
1
537
22
9
7
60
1.53
641404--641690
21
13.7
21
84
3
337
22
9
8
60
1.53
641695--641735
20
2.1
20
81
4
57
56
7
7
29
1.54
645044--645070
1
27.0
1
100
0
54
100
0
0
0
0.00
655211--655243
17
1.9
17
93
0
57
24
6
12
57
1.57
656397--656428
16
2.0
16
100
0
64
12
37
12
37
1.81
656432--656832
146
2.7
146
88
0
570
29
18
20
30
1.97
660004--660040
16
2.3
16
100
0
74
13
16
29
40
1.86
661848--661883
2
18.0
2
94
0
63
52
0
47
0
1.00
667201--667239
2
19.5
2
100
0
78
48
0
51
0
1.00
679007--679049
19
2.3
19
87
0
59
25
16
27
30
1.97
683683--684325
316
2.0
321
93
4
1095
34
16
21
26
1.95
687965--687999
16
2.2
16
94
0
61
0
2
17
80
0.84
688777--688814
20
1.9
20
100
0
76
23
10
15
50
1.75
688944--690016
47
23.0
47
90
2
1637
29
12
17
40
1.86
688944--690016
186
5.8
187
91
2
1617
29
12
17
40
1.86
688944--690016
233
4.6
233
90
2
1622
29
12
17
40
1.86
692074--692134
24
2.5
24
83
0
68
32
21
18
27
1.96
692101--692383
24
11.8
24
79
6
125
33
26
13
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
692224--692372
48
3.1
48
95
1
255
38
25
12
23
1.90
692224--692372
72
2.1
72
89
2
228
38
25
12
23
1.90
692339--692396
24
2.4
24
82
0
71
32
31
12
24
1.91
692224--692399
72
2.4
72
83
1
183
35
27
13
23
1.92
699642--699758
25
4.7
25
80
6
114
25
12
11
49
1.75
702376--702681
39
7.8
39
90
0
414
33
14
13
38
1.85
702384--702681
117
2.5
117
92
0
488
33
14
13
37
1.86
711233--711273
21
2.0
21
85
0
55
29
26
17
26
1.97
712550--712589
2
20.0
2
100
0
80
0
50
0
50
1.00
715161--715190
14
2.1
14
100
0
60
23
6
23
46
1.75
718142--718174
2
16.5
2
100
0
66
0
51
0
48
1.00
718677--718706
12
2.6
12
94
5
53
0
0
6
93
0.35
722088--722198
25
4.4
25
90
2
161
29
25
22
22
1.99
723479--723863
169
2.3
169
87
1
551
31
18
17
31
1.95
727467--727534
26
2.6
26
95
0
118
29
26
8
35
1.87
728599--728676
21
3.7
21
71
0
66
19
25
14
41
1.89
739011--739039
12
2.5
12
94
5
51
58
13
6
20
1.58
740978--741044
2
33.5
2
100
0
134
0
49
0
50
1.00
741042--741085
23
2.0
23
90
4
72
38
13
18
29
1.89
753376--753457
37
2.2
37
88
0
119
43
18
13
24
1.85
754654--754678
13
1.9
13
100
0
50
88
0
12
0
0.53
754868--755796
488
1.9
488
98
0
1795
31
14
14
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
757588--757624
2
18.5
2
94
0
65
0
45
0
54
1.00
762157--762211
27
2.0
27
100
0
110
29
21
7
41
1.80
764204--764258
27
2.0
27
100
0
110
29
21
7
41
1.80
767996--768055
21
2.9
21
79
0
66
48
10
16
25
1.77
768168--768242
4
18.8
4
70
10
55
5
26
24
44
1.75
768168--768242
20
3.8
20
78
3
80
5
26
24
44
1.75
771460--771514
24
2.3
24
100
0
110
36
16
23
23
1.94
772887--773469
164
3.5
164
84
3
732
25
23
15
34
1.94
774854--774895
4
10.8
4
84
5
50
33
26
40
0
1.56
781864--781964
16
6.3
16
94
0
175
42
25
24
6
1.79

Tables:   1   2   3