Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1583
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1104062
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.27
Warning! 201198 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:434798 original size:16 final size:17
Alignment explanation
Indices: 434768--434800 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
434758 ATTGGTAAAA
434768 TTGGAGTAGACGATTTT
1 TTGGAGTAGACGATTTT
*
434785 TTGGA-TAGAGGATTTT
1 TTGGAGTAGACGATTTT
434801 CAATTGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.24, C:0.03, G:0.30, T:0.42
Consensus pattern (17 bp):
TTGGAGTAGACGATTTT
Found at i:453075 original size:15 final size:15
Alignment explanation
Indices: 453052--453082 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
453042 TTCAATGATA
453052 TTTTAAGAGCTAACT
1 TTTTAAGAGCTAACT
*
453067 TTTTGAGAGCTAACT
1 TTTTAAGAGCTAACT
453082 T
1 T
453083 GGCTTTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (15 bp):
TTTTAAGAGCTAACT
Found at i:456669 original size:37 final size:33
Alignment explanation
Indices: 456642--456706 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
456632 CAAGAGTTTT
456642 CAAATGTAATTAATTAAATTACAATTAC-TTTG
1 CAAATGTAATTAATTAAATTACAATTACATTTG
*
456674 CAGATGTAATTAATTAAATTACAAATTACATTT
1 CAAATGTAATTAATTAAATTAC-AATTACATTT
456707 TCATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 21 0.70
33 6 0.20
34 3 0.10
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (33 bp):
CAAATGTAATTAATTAAATTACAATTACATTTG
Found at i:458100 original size:13 final size:13
Alignment explanation
Indices: 458082--458106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
458072 AATTACACTC
458082 AATTACCATTACA
1 AATTACCATTACA
458095 AATTACCATTAC
1 AATTACCATTAC
458107 CCCATCCCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (13 bp):
AATTACCATTACA
Found at i:459517 original size:18 final size:18
Alignment explanation
Indices: 459462--459518 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
459452 ATTTGATCAC
*
459462 ATAATACAATATCATAAAAT
1 ATAATACAATATCAT--ATT
459482 ATAATACAATAT-AGTATT
1 ATAATACAATATCA-TATT
*
459500 ATATTACAATATCATATT
1 ATAATACAATATCATATT
459518 A
1 A
459519 CATAATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 18 0.55
19 2 0.06
20 13 0.39
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAATACAATATCATATT
Found at i:459754 original size:15 final size:15
Alignment explanation
Indices: 459691--459873 Score: 102
Period size: 15 Copynumber: 11.5 Consensus size: 15
459681 GATAAAGCAA
* *
459691 AATATTATAAAATAC
1 AATATCATATAATAC
* * *
459706 ATTATTATATTATAC
1 AATATCATATAATAC
* *
459721 ATATTATCATATGACAC
1 A-A-TATCATATAATAC
*
459738 AATAAT-ATATATTAC
1 AAT-ATCATATAATAC
459753 AATATCATATAATAC
1 AATATCATATAATAC
*
459768 AATTTCATGTGATAAGATA-
1 AATATCA--T-AT-A-ATAC
459787 ATATATCATATAA-ACC
1 A-ATATCATATAATA-C
*
459803 AATATCATATCATAC
1 AATATCATATAATAC
* *
459818 AATATCGTATGATAC
1 AATATCATATAATAC
*
459833 AATATTATATAATATTAC
1 AATATCATAT-A-A-TAC
459851 AATATCATATAATAC
1 AATATCATATAATAC
*
459866 AATTTCAT
1 AATATCAT
459874 GTGATATAAT
Statistics
Matches: 131, Mismatches: 21, Indels: 32
0.71 0.11 0.17
Matches are distributed among these distances:
14 3 0.02
15 80 0.61
16 7 0.05
17 16 0.12
18 15 0.11
19 2 0.02
20 8 0.06
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (15 bp):
AATATCATATAATAC
Found at i:459853 original size:18 final size:18
Alignment explanation
Indices: 459830--459864 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
459820 TATCGTATGA
*
459830 TACAATATTATATAATAT
1 TACAATATCATATAATAT
459848 TACAATATCATATAATA
1 TACAATATCATATAATA
459865 CAATTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
TACAATATCATATAATAT
Found at i:459867 original size:98 final size:98
Alignment explanation
Indices: 459725--459952 Score: 301
Period size: 98 Copynumber: 2.4 Consensus size: 98
459715 TTATACATAT
* *
459725 TATCATATGACACAATA--ATAT-ATATTACAATATCATATAATACAATTTCATGTGATA-AGAT
1 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATA-AT
*
459786 AATATATCATA-T-AAACCAATATCATA-TCATACAA
65 AATATAT--TACTGAAACCAATACCATACT-ATACAA
*
459820 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATT
1 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATA
*
459885 CTATATTACTGAAACCAATACCATACTATACAA
66 ATATATTACTGAAACCAATACCATACTATACAA
* *
459918 TATTGTATGATACAATATTATAGAATA-TACAATAT
1 TATCGTATGATACAATATTATATAATATTACAATAT
459953 TGTATCATAG
Statistics
Matches: 119, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
95 15 0.13
96 2 0.02
97 13 0.11
98 87 0.73
99 2 0.02
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (98 bp):
TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATA
ATATATTACTGAAACCAATACCATACTATACAA
Found at i:459977 original size:32 final size:32
Alignment explanation
Indices: 459911--459977 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
459901 AATACCATAC
* **
459911 TATACAATATTGTATGATACAATATTATAGAA
1 TATACAATATTGTATCATACAATACAATAGAA
** *
459943 TATACAATATTGTATCATAGGATACAATATAA
1 TATACAATATTGTATCATACAATACAATAGAA
459975 TAT
1 TAT
459978 TTTGCAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (32 bp):
TATACAATATTGTATCATACAATACAATAGAA
Found at i:460056 original size:20 final size:20
Alignment explanation
Indices: 460027--460075 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
460017 ATAAATTAAA
* *
460027 AATACAATATAATATTATAC
1 AATACTATATAATAATATAC
* *
460047 AATATTATATCATAATATAC
1 AATACTATATAATAATATAC
460067 AATACTATA
1 AATACTATA
460076 CATAACAGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (20 bp):
AATACTATATAATAATATAC
Found at i:460201 original size:20 final size:20
Alignment explanation
Indices: 460178--460230 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
460168 ATATGATATC
460178 ATATTGTATCATATCAAACA
1 ATATTGTATCATATCAAACA
* *
460198 ATATTGTTTCATATCATACA
1 ATATTGTATCATATCAAACA
* *
460218 ATACTATATCATA
1 ATATTGTATCATA
460231 GGAATCATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (20 bp):
ATATTGTATCATATCAAACA
Found at i:492867 original size:321 final size:322
Alignment explanation
Indices: 492267--493052 Score: 1234
Period size: 321 Copynumber: 2.4 Consensus size: 322
492257 GGTCCTCCAA
* *
492267 CAGTTTCCGTTCATTTTCTTCGCAGAGGATGAACATATTGAAATTAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTGGTATACAGGTTTA
* * *
492332 TTAGGATAATATCTTGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
66 TCAGGATAATATCTAGGTCAAG-TCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGG
*
492397 CCCTTGGACGCAAAAAAAAATTAATTCCAGTTATTTGCAGTTTCCGCTTATTTTCTTCGCAAAGA
130 CCCTTGGACGC-----AAAATAAATTCCAGTTATTTGCAGTTTCCGCTTATTTTCTTCGCAAAGA
* * *
492462 ATAAACATATTGAAATGAAATTTGGTATACAGGTTTATTAGGATAATATCTAGGTCAAGTTAGAT
190 ATAAACATATTGAAATGAAATTTGGTATACAGGATTATCAGGAAAATATCTAGGTCAAGTTAGAT
* * * * **
492527 ATTGGGTACGGTCGAGCAATTTTCGACATAGTTATGGCCCTTGGACGCAGAAAAATTCCAGTTAT
255 ATTGGGTACGATCGAGCAATTTTCGACAGAGTTATGACCATAAGACGCAGAAAAATTCCAGTTAT
*
492592 TTG
320 GTG
* *
492595 CAGTTTCCGCTCATTTTCTTCGCAGGGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTGGTATACAGGTTTA
*
492660 TCAGGATAATATCTAGGCCAAGTCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGGC
66 TCAGGATAATATCTAGGTCAAGTCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGGC
492725 CCTTGGACGC-AAATAAATTCCAGTTATTTGCAGTTTCCGCTTATTTTCTTCGCAAAGAATAAAC
131 CCTTGGACGCAAAATAAATTCCAGTTATTTGCAGTTTCCGCTTATTTTCTTCGCAAAGAATAAAC
* *
492789 ATATTGAAATGAAATTTGGTATACAGGATTATCAGGAAAATATCTAGGTCAAGTTCGATATTTGG
196 ATATTGAAATGAAATTTGGTATACAGGATTATCAGGAAAATATCTAGGTCAAGTTAGATATTGGG
* * *
492854 TACGATTGAGCAATTTTCGACAGAGTTATGACCATAATACGTAGAAAAATTCCAGTTATGTG
261 TACGATCGAGCAATTTTCGACAGAGTTATGACCATAAGACGCAGAAAAATTCCAGTTATGTG
* * *
492916 CAGTTTCTGCTCATTTTCTTTGCAGAGGATGAACATATTAAAATGAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTGGTATACAGGTTTA
* *
492981 TCAGGGTAATATCTAGGTCAAGTCGATATTGGGTA-GGTCGAGCAATTTTTGACAGAGTTCTGGC
66 TCAGGATAATATCTAGGTCAAGTCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGGC
*
493045 CATTGGAC
131 CCTTGGAC
493053 TTAGAAAAAT
Statistics
Matches: 425, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
320 35 0.08
321 258 0.61
327 52 0.12
328 80 0.19
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (322 bp):
CAGTTTCCGCTCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTGGTATACAGGTTTA
TCAGGATAATATCTAGGTCAAGTCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGGC
CCTTGGACGCAAAATAAATTCCAGTTATTTGCAGTTTCCGCTTATTTTCTTCGCAAAGAATAAAC
ATATTGAAATGAAATTTGGTATACAGGATTATCAGGAAAATATCTAGGTCAAGTTAGATATTGGG
TACGATCGAGCAATTTTCGACAGAGTTATGACCATAAGACGCAGAAAAATTCCAGTTATGTG
Found at i:492953 original size:161 final size:161
Alignment explanation
Indices: 492267--493094 Score: 1151
Period size: 161 Copynumber: 5.1 Consensus size: 161
492257 GGTCCTCCAA
* * *
492267 CAGTTTCCGTTCATTTTCTTCGCAGAGGATGAACATATTGAAATTAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
* *
492332 TTAGGATAATATCTTGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
66 TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
*
492397 CCCTTGGACGCAAAAAAAAATTAATTCCAGTTATTTG
131 CCCTTGGACGC----AGAAA--AATTCCAGTTATTTG
* * *
492434 CAGTTTCCGCTTATTTTCTTCGCAAAGAATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
* * *
492499 TTAGGATAATATCTAGGTCAAGTTAGATATTGGGTACGGTCGAGCAATTTTCGACATAGTTATGG
66 TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
492564 CCCTTGGACGCAGAAAAATTCCAGTTATTTG
131 CCCTTGGACGCAGAAAAATTCCAGTTATTTG
*
492595 CAGTTTCCGCTCATTTTCTTCGCAGGGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
* *
492660 TCAGGATAATATCTAGGCCAAG-TCGATATTGGGTACGGTCGAGCAATTTTTGACAGAGTTATGG
66 TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
492724 CCCTTGGACGCA-AATAAATTCCAGTTATTTG
131 CCCTTGGACGCAGAA-AAATTCCAGTTATTTG
* * * *
492755 CAGTTTCCGCTTATTTTCTTCGCAAAGAATAAACATATTGAAATGAAATTTGGTATACAGGATTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
* * * * *
492820 TCAGGAAAATATCTAGGTCAAGTTCGATATTTGGTACGATTGAGCAATTTTCGACAGAGTTATGA
66 TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
* *** * *
492885 CCATAATACGTAGAAAAATTCCAGTTATGTG
131 CCCTTGGACGCAGAAAAATTCCAGTTATTTG
* * * *
492916 CAGTTTCTGCTCATTTTCTTTGCAGAGGATGAACATATTAAAATGAAATTTGGTATACAGGTTTA
1 CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
* * *
492981 TCAGGGTAATATCTAGGTCAAG-TCGATATTGGGTA-GGTCGAGCAATTTTTGACAGAGTTCTGG
66 TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
* ** **
493044 CCATTGGACTTAGAAAAATTCCAAATATTTG
131 CCCTTGGACGCAGAAAAATTCCAGTTATTTG
** * *
493075 CAACTTACGTTCATTTTCTT
1 CAGTTTCCGCTCATTTTCTT
493095 TGTTGATGTT
Statistics
Matches: 593, Mismatches: 65, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
159 64 0.11
160 159 0.27
161 232 0.39
162 2 0.00
163 4 0.01
167 132 0.22
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (161 bp):
CAGTTTCCGCTCATTTTCTTCGCAGAGGATAAACATATTGAAATGAAATTTGGTATACAGGTTTA
TCAGGATAATATCTAGGTCAAGTTCGATATTGGGTACGGTCGAGCAATTTTCGACAGAGTTATGG
CCCTTGGACGCAGAAAAATTCCAGTTATTTG
Found at i:504947 original size:187 final size:186
Alignment explanation
Indices: 504630--505005 Score: 743
Period size: 187 Copynumber: 2.0 Consensus size: 186
504620 TTTGAATATT
504630 ATAATTCACCTTAGGTAACTTTGGGAATACAAAATTCTATCACGTGACGTGTAAGGTCACATGGT
1 ATAATTCACCTTAGGTAACTTTGGGAATACAAAATTCTATCACGTGACGTGTAAGGTCACATGGT
504695 ATGTGCTAACTAGGACAATGTTTTCGAACACGTTAAGTTGTCAAGCATTGATTTAATGTCTTCAG
66 ATGTGCTAACTAGGACAATGTTTTCGAACACGTTAAGTTGTCAAGCATTGATTTAATGTCTTCAG
504760 TTTTAACATGGACGTGGTCTAGTTGTTGAAACGATAGTAAATAGGATACTTATACC
131 TTTTAACATGGACGTGGTCTAGTTGTTGAAACGATAGTAAATAGGATACTTATACC
504816 ATNAATTCACCTTAGGTAACTTTGGGAATACAAAATTCTATCACGTGACGTGTAAGGTCACATGG
1 AT-AATTCACCTTAGGTAACTTTGGGAATACAAAATTCTATCACGTGACGTGTAAGGTCACATGG
504881 TATGTGCTAACTAGGACAATGTTTTCGAACACGTTAAGTTGTCAAGCATTGATTTAATGTCTTCA
65 TATGTGCTAACTAGGACAATGTTTTCGAACACGTTAAGTTGTCAAGCATTGATTTAATGTCTTCA
504946 GTTTTAACATGGACGTGGTCTAGTTGTTGAAACGATAGTAAATAGGATACTTATACC
130 GTTTTAACATGGACGTGGTCTAGTTGTTGAAACGATAGTAAATAGGATACTTATACC
505003 ATA
1 ATA
505006 TAGAATAGAT
Statistics
Matches: 189, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
186 3 0.02
187 186 0.98
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (186 bp):
ATAATTCACCTTAGGTAACTTTGGGAATACAAAATTCTATCACGTGACGTGTAAGGTCACATGGT
ATGTGCTAACTAGGACAATGTTTTCGAACACGTTAAGTTGTCAAGCATTGATTTAATGTCTTCAG
TTTTAACATGGACGTGGTCTAGTTGTTGAAACGATAGTAAATAGGATACTTATACC
Found at i:507463 original size:16 final size:16
Alignment explanation
Indices: 507420--507464 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
507410 GTTTATATAC
* * *
507420 TTACTTACTTAATTAA
1 TTACCTACTTACTCAA
*
507436 TTATCTACTTACTCAA
1 TTACCTACTTACTCAA
507452 TTACCTACTTACT
1 TTACCTACTTACT
507465 TACTTATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACCTACTTACTCAA
Found at i:507464 original size:20 final size:20
Alignment explanation
Indices: 507417--507468 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
507407 AGTGTTTATA
* *
507417 TACTTACTTACTTAATTAAT
1 TACTTACTTACTCAATTAAC
*
507437 TA-TCTACTTACTCAATTACC
1 TACT-TACTTACTCAATTAAC
507457 TACTTACTTACT
1 TACTTACTTACT
507469 TATTTAGTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (20 bp):
TACTTACTTACTCAATTAAC
Found at i:511899 original size:18 final size:18
Alignment explanation
Indices: 511875--511916 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
511865 GCTATTCTGA
511875 ATAGCTTAATAAAGCTAT
1 ATAGCTTAATAAAGCTAT
* * *
511893 TTAGCTTATTCAAGCTAT
1 ATAGCTTAATAAAGCTAT
511911 ATAGCT
1 ATAGCT
511917 AAATCTGGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
ATAGCTTAATAAAGCTAT
Found at i:522450 original size:1 final size:1
Alignment explanation
Indices: 522444--522471 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
522434 GGCCATTTAC
522444 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
522472 GCTTGCTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:523177 original size:18 final size:19
Alignment explanation
Indices: 523156--523193 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
523146 ATGAGTGCAT
* *
523156 ATTTTATTTTTCC-GTGGA
1 ATTTTAATTTACCTGTGGA
523174 ATTTTAATTTACCTGTGGA
1 ATTTTAATTTACCTGTGGA
523193 A
1 A
523194 ACAACTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.50
Consensus pattern (19 bp):
ATTTTAATTTACCTGTGGA
Found at i:524247 original size:2 final size:2
Alignment explanation
Indices: 524240--524296 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
524230 CCTGTGCCCA
524240 TC TC TC TC TC TC TC TC TC TC TC TC TC -C TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
524281 TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC
524297 ATGAAGTATT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:526036 original size:14 final size:15
Alignment explanation
Indices: 526017--526046 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
526007 TCCCTATAAT
526017 TAACCC-ACCCAGAC
1 TAACCCTACCCAGAC
526031 TAACCCTACCCAGAC
1 TAACCCTACCCAGAC
526046 T
1 T
526047 GGTCCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (15 bp):
TAACCCTACCCAGAC
Found at i:526967 original size:2 final size:2
Alignment explanation
Indices: 526960--527008 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
526950 ACCTGTTTGG
526960 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
527002 TC TC TC T
1 TC TC TC T
527009 AAAAAAAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:530509 original size:2 final size:2
Alignment explanation
Indices: 530502--530540 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
530492 GTTTCCATGT
530502 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
530541 GAATCACAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:533395 original size:2 final size:2
Alignment explanation
Indices: 533388--533419 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
533378 ATGATATGGG
533388 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
533420 CTTAATCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:534464 original size:17 final size:17
Alignment explanation
Indices: 534442--534487 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
534432 TTCAAAACTC
534442 CGAGATATCTGAGTATT
1 CGAGATATCTGAGTATT
534459 CGAGATATCTGAGTATT
1 CGAGATATCTGAGTATT
*
534476 CCAGATAT-TGAG
1 CGAGATATCTGAG
534488 GGTAAAATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 4 0.14
17 24 0.86
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (17 bp):
CGAGATATCTGAGTATT
Found at i:536316 original size:18 final size:18
Alignment explanation
Indices: 536295--536368 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
536285 CCTTTGTCAA
* *
536295 TCTCTGTCTGTCTGTCTG
1 TCTCTGTCTCTCTGTCTC
*
536313 TCTCTCTCTCTCTGTCTC
1 TCTCTGTCTCTCTGTCTC
*
536331 TCTCTGTCTCTCTCTCTC
1 TCTCTGTCTCTCTGTCTC
* *
536349 TCTCTCTCTCTCTCTCTC
1 TCTCTGTCTCTCTGTCTC
536367 TC
1 TC
536369 ATGCATACAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (18 bp):
TCTCTGTCTCTCTGTCTC
Found at i:536320 original size:2 final size:2
Alignment explanation
Indices: 536313--536368 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
536303 TGTCTGTCTG
* *
536313 TC TC TC TC TC TC TG TC TC TC TC TG TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
536355 TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC
536369 ATGCATACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.46, G:0.04, T:0.50
Consensus pattern (2 bp):
TC
Found at i:536332 original size:10 final size:10
Alignment explanation
Indices: 536305--536365 Score: 81
Period size: 10 Copynumber: 6.3 Consensus size: 10
536295 TCTCTGTCTG
*
536305 TCTGTCTGTC
1 TCTGTCTCTC
536315 TC--TCTCTC
1 TCTGTCTCTC
536323 TCTGTCTCTC
1 TCTGTCTCTC
536333 TCTGTCTCTC
1 TCTGTCTCTC
*
536343 TCTCTCTCTC
1 TCTGTCTCTC
*
536353 TCTCTCTCTC
1 TCTGTCTCTC
536363 TCT
1 TCT
536366 CTCATGCATA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
8 7 0.15
10 40 0.85
ACGTcount: A:0.00, C:0.43, G:0.07, T:0.51
Consensus pattern (10 bp):
TCTGTCTCTC
Found at i:536476 original size:16 final size:15
Alignment explanation
Indices: 536447--536487 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
536437 TGTATCATCT
536447 TATCTTTCAGATAAA
1 TATCTTTCAGATAAA
536462 TATCTTTCTAGATAAA
1 TATCTTTC-AGATAAA
*
536478 TATCTGTCAG
1 TATCTTTCAG
536488 CATTGTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (15 bp):
TATCTTTCAGATAAA
Found at i:545174 original size:138 final size:137
Alignment explanation
Indices: 544912--545179 Score: 315
Period size: 138 Copynumber: 1.9 Consensus size: 137
544902 ATGAGGGGTC
* * *
544912 CATTATCCTTGGGTCCCTCCAGTGTATTTGACATACTATCCAAAGTTAGCTCCTGCATATTGGAC
1 CATTATCCTTAGGTCCCTCCAGTGTATTTGACATACTATCCAAAGGTAACTCCTGCATATTGGAC
** * * * * * *
544977 ACATTCTCCCTAAGTCCCTTCAATGTATTAGATACATTATTTTAAGGCCTATTAAGTGTATTAGA
66 ACACCCTCCCTAAGTCCCATCAATGTATTAGACACAGTATCTTAAGCCCTACT-AGTGTATTAGA
545042 TACATGTA
130 TACATGTA
* * *** *
545050 CATTGTCCTTAGGTCCCTCCAGTGTATTTGACATACTCTCTGTAGGTAACTCCTGCATGTTGGAC
1 CATTATCCTTAGGTCCCTCCAGTGTATTTGACATACTATCCAAAGGTAACTCCTGCATATTGGAC
* *
545115 ACACCCTCCCTAAGTCCCATCAGA-GTATTAGACACAGTATCCTTATGTCCCTCCT-GTGTATTA
66 ACACCCTCCCTAAGTCCCATCA-ATGTATTAGACACAGTAT-CTTAAG-CCCTACTAGTGTATTA
545178 GA
128 GA
545180 CATACTATCC
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
138 99 0.92
139 5 0.05
140 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (137 bp):
CATTATCCTTAGGTCCCTCCAGTGTATTTGACATACTATCCAAAGGTAACTCCTGCATATTGGAC
ACACCCTCCCTAAGTCCCATCAATGTATTAGACACAGTATCTTAAGCCCTACTAGTGTATTAGAT
ACATGTA
Found at i:546516 original size:3 final size:3
Alignment explanation
Indices: 546508--546537 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
546498 TGCACCCCTT
546508 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
546538 CCTTTCCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
TCC
Found at i:546992 original size:31 final size:31
Alignment explanation
Indices: 546943--547814 Score: 1100
Period size: 31 Copynumber: 28.1 Consensus size: 31
546933 GCAGTGTTGA
*
546943 ACACAGGTCAGTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* **
546974 AC-CAAGGTAATTGGTTAGAATCCCTCAAAAT
1 ACAC-AGGTCATTGGTTAGAATCCCTCCCAAT
*
547005 ACACAGGTCATTGGTTAGAATCCCTTCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547036 ACGCAGGTCATTAGTTTGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * * * *
547067 ATACTGGTCATTGGTTATAATTCCTTCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
*
547098 ACACAGGTCAATGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547129 ACACAGGTCAGTGGTTAGAATCCCTTCACAAT
1 ACACAGGTCATTGGTTAGAATCCC-TCCCAAT
*
547161 ACACAGGTCATTAGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547192 ATACTGGTCATTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * * *
547223 ATACAGATCAGTGGTTAGAATCCCTCCAAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
*
547254 ACACAGGTCATTGGTTAGAATCCCTCCCATT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
*
547285 ACACAGGTCATTAGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547316 ACACTGGTCATTGGTAAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547347 ACACAGGTCATTGGTTAGAATTCCTCTCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * ** * *
547378 ACACTGGTCTTTGGAAAGATTCTCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547409 ATACATGTCAATGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * **
547440 ATAAAGGTCATTAGG-TAGAATCCCTCCTTAT
1 ACACAGGTCATT-GGTTAGAATCCCTCCCAAT
* * * *
547471 ATACAGTTCAGTGGTTAGAATCCCTCTCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
547502 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547533 ACACAGGTCAGTGTTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547564 ACACAGATCAGTGGTTAGAATCCCTCCTAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547595 ACACAGGCCAGTGGTTAGAATCCCTCCAAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
*
547626 ACACTGGTCATTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547657 ACACAGGTCAGTGGTTAGAATCCCTCCAAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547688 ACACAGATCAGTGGTTAGAATCCCTCCTAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547719 ACACAGGCCAGTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* *
547750 ACACAGGCCAGTGGTTAGAATCCCTCCCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
* * *
547781 TCACAGGTCATTGGTTAGAATACCTCTCAAT
1 ACACAGGTCATTGGTTAGAATCCCTCCCAAT
547812 ACA
1 ACA
547815 AAACAATGCT
Statistics
Matches: 726, Mismatches: 110, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
30 3 0.00
31 692 0.95
32 31 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
ACACAGGTCATTGGTTAGAATCCCTCCCAAT
Found at i:562629 original size:14 final size:14
Alignment explanation
Indices: 562610--562661 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
562600 CATTTCTAAG
562610 GGAATTACAGAATA
1 GGAATTACAGAATA
*
562624 GGAATTACAGAGT-
1 GGAATTACAGAATA
** *
562637 TTAATTATAGAATA
1 GGAATTACAGAATA
562651 GGAATTACAGA
1 GGAATTACAGA
562662 GTTTAAATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
13 9 0.31
14 20 0.69
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (14 bp):
GGAATTACAGAATA
Found at i:562650 original size:27 final size:27
Alignment explanation
Indices: 562612--562667 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
562602 TTTCTAAGGG
562612 AATTACAGAATAGGAATTACAGAGTTT
1 AATTACAGAATAGGAATTACAGAGTTT
*
562639 AATTATAGAATAGGAATTACAGAGTTT
1 AATTACAGAATAGGAATTACAGAGTTT
562666 AA
1 AA
562668 ATTTTCTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.30
Consensus pattern (27 bp):
AATTACAGAATAGGAATTACAGAGTTT
Found at i:570913 original size:35 final size:34
Alignment explanation
Indices: 570867--571130 Score: 370
Period size: 35 Copynumber: 7.6 Consensus size: 34
570857 TGTGACATTA
*
570867 TGTCATATCATGTGACATTTAGC-CCACACAACAGG
1 TGTCATATCATGTGACA-TCA-CACCACACAACAGG
570902 TGTCATATCATGTGACATCACATCCACACAACAGG
1 TGTCATATCATGTGACATCACA-CCACACAACAGG
570937 TGTCATATCATGTGACATCACATCCACACAACAGG
1 TGTCATATCATGTGACATCACA-CCACACAACAGG
570972 TGTCATATCATGTGACATCACATCCACACAACAGG
1 TGTCATATCATGTGACATCACA-CCACACAACAGG
571007 TGTCATATCATGTGACATCACATCCACACAACAGG
1 TGTCATATCATGTGACATCACA-CCACACAACAGG
* *
571042 TGTCATATCATGTGACATTTAGC-CCACATAACAGG
1 TGTCATATCATGTGACA-TCA-CACCACACAACAGG
* *
571077 TTTCATATCATGTGACATCACACCAACACAGCAGG
1 TGTCATATCATGTGACATCACACC-ACACAACAGG
* *
571112 TTTTATATCATGTGACATC
1 TGTCATATCATGTGACATC
571131 TCACTGATAC
Statistics
Matches: 215, Mismatches: 8, Indels: 12
0.91 0.03 0.05
Matches are distributed among these distances:
33 2 0.01
34 6 0.03
35 204 0.95
36 2 0.01
37 1 0.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (34 bp):
TGTCATATCATGTGACATCACACCACACAACAGG
Found at i:573620 original size:20 final size:19
Alignment explanation
Indices: 573577--573622 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
573567 ATGCAGCTCC
*
573577 TTTTGTCGGAGGACTCGGG
1 TTTTGTGGGAGGACTCGGG
*
573596 TTTTGTGGGAGGACTCGATG
1 TTTTGTGGGAGGACTCG-GG
573616 TTTTGTG
1 TTTTGTG
573623 TAGAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.11, C:0.11, G:0.39, T:0.39
Consensus pattern (19 bp):
TTTTGTGGGAGGACTCGGG
Found at i:604718 original size:2 final size:2
Alignment explanation
Indices: 604711--604759 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
604701 ACAGACATTG
604711 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
604753 CT CT CT C
1 CT CT CT C
604760 ATTTGGGCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:604959 original size:39 final size:39
Alignment explanation
Indices: 604916--605824 Score: 717
Period size: 39 Copynumber: 23.3 Consensus size: 39
604906 TTGCTTTGTT
* * *
604916 TATCTCTTTGCACTTGCCTTTTGCAATGCTAGCTTCGAC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * *
604955 TATCTCTTGGTTCTTCCCTTTTGCAATGCTAGCTTCGAC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * *
604994 TATCTCTTGAGT-CTTGCCTTTCGCAACGCTCG-TGTCATC
1 TATCTCTTG-GTACTTGCCTTTTGCAATGCTAGCT-TCGTC
* *
605033 AATCTCTTTGTACTTGCCTTTTGCAATGCTAGCTTCGTC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * * * *
605072 TACCTCATGGTACTTGCCTATGGCAATGCTAGCTTTGTA
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * **
605111 TA-CATCTTGGGACTTCCCTATAACAATGCTAGCTTCGTC
1 TATC-TCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
*
605150 TACCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * * * * *
605189 TACCTCATGGTACTTTCCTGTGGCAATGCTAGCTTTGTA
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* *
605228 TA-CATCTTGGTACTT-CCCTATGACAATGCTAGCTTCGTC
1 TATC-TCTTGGTACTTGCCTTTTG-CAATGCTAGCTTCGTC
* * * * * *
605267 TACCTCATGGTACTTGCCTATGGCAATGCTTGCTTCCTC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * *
605306 TATCTCTTGGT-TTTCGCCTTTTGCAATGTTAGCTTCGAC
1 TATCTCTTGGTACTT-GCCTTTTGCAATGCTAGCTTCGTC
* * * *
605345 TATCTCTTGAGT-CTTGCCTTTCGCAACGCTCG-TGTCATC
1 TATCTCTTG-GTACTTGCCTTTTGCAATGCTAGCT-TCGTC
* * * *
605384 AATCTCTTTAG-ACTTGCCTTTCGCAATGCTAGCTTCGTG
1 TATCTC-TTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * *
605423 TACCTCCTGGTACTT-CCATGTGGCAATGCTAGCTTCGTC
1 TATCTCTTGGTACTTGCC-TTTTGCAATGCTAGCTTCGTC
*
605462 TACCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * ** * * *
605501 TACCTCATGGTACTTGCCCGTGGCAATGCTAGCTTTGTA
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* *
605540 TA-CATCTTGGTACTT-CCCTATGACAATGCTAGCTTCGTC
1 TATC-TCTTGGTACTTGCCTTTTG-CAATGCTAGCTTCGTC
*
605579 TA-CTTCTTGGTAATTG-CTTTTCGCAATGCTAGCTTCGTC
1 TATC-TCTTGGTACTTGCCTTTT-GCAATGCTAGCTTCGTC
* ** * *
605618 TACCTCTTGGTTTTTGCCTTTTGCAATGCTAGTTTCAT-
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * * * *
605656 AATTCTCTTTGCACTTGCCTTTCGCAATGCTAGCTTTGTC
1 TA-TCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
* * *
605696 -ATTCTCTTGGTTA-TTGTCTTTCT-CAATACTAGCTTCAT-
1 TA-TCTCTTGG-TACTTGCCTTT-TGCAATGCTAGCTTCGTC
* * *
605734 GATTCTCTTTGTACTTGCCTTTCT-CAATGCTAGCTTCATC
1 TA-TCTCTTGGTACTTGCCTTT-TGCAATGCTAGCTTCGTC
* * *
605774 TATCTCTTGGTTCTTGCATTTTGCTATGCTAGCTTCG-C
1 TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
*
605812 TTATCTTTTGGTA
1 -TATCTCTTGGTA
605825 TTTGTATTTC
Statistics
Matches: 700, Mismatches: 136, Indels: 68
0.77 0.15 0.08
Matches are distributed among these distances:
38 25 0.04
39 649 0.93
40 26 0.04
ACGTcount: A:0.16, C:0.26, G:0.17, T:0.41
Consensus pattern (39 bp):
TATCTCTTGGTACTTGCCTTTTGCAATGCTAGCTTCGTC
Found at i:608586 original size:23 final size:23
Alignment explanation
Indices: 608560--608605 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
608550 TTACGACCCC
608560 TGATAATCCTGACACTGACAAAG
1 TGATAATCCTGACACTGACAAAG
608583 TGATAATCCTGACACTGACAAAG
1 TGATAATCCTGACACTGACAAAG
608606 CTGCCTCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (23 bp):
TGATAATCCTGACACTGACAAAG
Found at i:621616 original size:64 final size:64
Alignment explanation
Indices: 621515--621695 Score: 299
Period size: 64 Copynumber: 2.8 Consensus size: 64
621505 ACCTGGTGGG
** * * *
621515 AGTGTTGTCTATAAATAGTAACAGACCGACCTCTGTAGCTCCACCTGATGGTGGTTTATTTATC
1 AGTGTTGTCTATATTTAGAAACAGACTGACCTCTGTAGCTCCACCTGGTGGTGGTTTATTTATC
*
621579 AGTGTTGTCTATATTTAGAAACAGACTGACCTCTGTAGCTCCACCTGGTGGTTGTTTATTTATC
1 AGTGTTGTCTATATTTAGAAACAGACTGACCTCTGTAGCTCCACCTGGTGGTGGTTTATTTATC
*
621643 AGTGTTGTCTATATTTAGAAACAGACTGACCTCTCTAGCTCCACCTGGTGGTG
1 AGTGTTGTCTATATTTAGAAACAGACTGACCTCTGTAGCTCCACCTGGTGGTG
621696 ACAGTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 109 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.35
Consensus pattern (64 bp):
AGTGTTGTCTATATTTAGAAACAGACTGACCTCTGTAGCTCCACCTGGTGGTGGTTTATTTATC
Found at i:622317 original size:2 final size:2
Alignment explanation
Indices: 622306--622363 Score: 102
Period size: 2 Copynumber: 30.0 Consensus size: 2
622296 CATAAGATTA
622306 CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
622347 CT CT CT CT CT -T CT CT CT
1 CT CT CT CT CT CT CT CT CT
622364 ATAAAAACAG
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 52 0.96
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:623549 original size:31 final size:31
Alignment explanation
Indices: 623511--623679 Score: 248
Period size: 31 Copynumber: 5.5 Consensus size: 31
623501 ATTAAAACGA
623511 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
1 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
*
623542 AATTGTGGGAGCTGTTTGTTGATGTGCAATG
1 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
* * **
623573 AGTTGTGGGAGCTGTTTGTTAATGCACAAGG
1 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
* * *
623604 AATTGTGGGAGATGTTTTTTGATGTGAAAGG
1 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
* *
623635 AATTGTTGGAGCTGTTTGTTGATGAGCAAGG
1 AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
623666 AATTGTGGGAGCTG
1 AATTGTGGGAGCTG
623680 ACCTGGTTCT
Statistics
Matches: 119, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 119 1.00
ACGTcount: A:0.22, C:0.06, G:0.37, T:0.36
Consensus pattern (31 bp):
AATTGTGGGAGCTGTTTGTTGATGTGCAAGG
Found at i:623657 original size:93 final size:93
Alignment explanation
Indices: 623511--623679 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
623501 ATTAAAACGA
* * * * *
623511 AATTGTGGGAGCTGTTTGTTGATGTGCAAGGAATTGTGGGAGCTGTTTGTTGATGTGCAATGAGT
1 AATTGTGGGAGATGTTTGTTGATGTGAAAGGAATTGTGGGAGCTGTTTGTTGATGAGCAAGGAAT
623576 TGTGGGAGCTGTTTGTTAATGCACAAGG
66 TGTGGGAGCTGTTTGTTAATGCACAAGG
* *
623604 AATTGTGGGAGATGTTTTTTGATGTGAAAGGAATTGTTGGAGCTGTTTGTTGATGAGCAAGGAAT
1 AATTGTGGGAGATGTTTGTTGATGTGAAAGGAATTGTGGGAGCTGTTTGTTGATGAGCAAGGAAT
623669 TGTGGGAGCTG
66 TGTGGGAGCTG
623680 ACCTGGTTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.06, G:0.37, T:0.36
Consensus pattern (93 bp):
AATTGTGGGAGATGTTTGTTGATGTGAAAGGAATTGTGGGAGCTGTTTGTTGATGAGCAAGGAAT
TGTGGGAGCTGTTTGTTAATGCACAAGG
Found at i:624133 original size:26 final size:27
Alignment explanation
Indices: 624100--624152 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
624090 TATGTTCTCA
624100 TTTGACAAAATATCTC-AAGAGACTTC
1 TTTGACAAAATATCTCAAAGAGACTTC
*
624126 TTTGACAAAATATCTCAAAGGGACTTC
1 TTTGACAAAATATCTCAAAGAGACTTC
624153 AATCAAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (27 bp):
TTTGACAAAATATCTCAAAGAGACTTC
Found at i:624467 original size:26 final size:26
Alignment explanation
Indices: 624431--624584 Score: 254
Period size: 26 Copynumber: 5.9 Consensus size: 26
624421 TTTCAAAATG
*
624431 ACAAGCAATCCCTATCTGTTGTGTGT
1 ACAAACAATCCCTATCTGTTGTGTGT
624457 ACAAACAATCCCTATCTGTTGTGTGT
1 ACAAACAATCCCTATCTGTTGTGTGT
* *
624483 ACAAGCACTCCCTATCTGTTGTGTGT
1 ACAAACAATCCCTATCTGTTGTGTGT
*
624509 ACAAACACTCCCTATCTGTTGTGTGT
1 ACAAACAATCCCTATCTGTTGTGTGT
*
624535 ACAAGCAATCCCTATCTGTTGTGTGT
1 ACAAACAATCCCTATCTGTTGTGTGT
*
624561 ATAAACAATCCCTATCTGTTGTGT
1 ACAAACAATCCCTATCTGTTGTGT
624585 CTGTTGTGTG
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 120 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (26 bp):
ACAAACAATCCCTATCTGTTGTGTGT
Found at i:624509 original size:52 final size:52
Alignment explanation
Indices: 624431--624584 Score: 281
Period size: 52 Copynumber: 3.0 Consensus size: 52
624421 TTTCAAAATG
624431 ACAAGCAATCCCTATCTGTTGTGTGTACAAACAATCCCTATCTGTTGTGTGT
1 ACAAGCAATCCCTATCTGTTGTGTGTACAAACAATCCCTATCTGTTGTGTGT
* *
624483 ACAAGCACTCCCTATCTGTTGTGTGTACAAACACTCCCTATCTGTTGTGTGT
1 ACAAGCAATCCCTATCTGTTGTGTGTACAAACAATCCCTATCTGTTGTGTGT
*
624535 ACAAGCAATCCCTATCTGTTGTGTGTATAAACAATCCCTATCTGTTGTGT
1 ACAAGCAATCCCTATCTGTTGTGTGTACAAACAATCCCTATCTGTTGTGT
624585 CTGTTGTGTG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 97 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (52 bp):
ACAAGCAATCCCTATCTGTTGTGTGTACAAACAATCCCTATCTGTTGTGTGT
Found at i:624701 original size:22 final size:20
Alignment explanation
Indices: 624673--624726 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
624663 ACTCTAAAAT
624673 ACACAGGTAAATCAAAGATATA
1 ACACAGGTAAA-CAAAGATA-A
* *
624695 ACACAGGTATAACATAGGTAA
1 ACACAGGTA-AACAAAGATAA
624716 ACACAGGTAAA
1 ACACAGGTAAA
624727 AATAACGGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 2 0.07
21 10 0.34
22 15 0.52
23 2 0.07
ACGTcount: A:0.52, C:0.15, G:0.17, T:0.17
Consensus pattern (20 bp):
ACACAGGTAAACAAAGATAA
Found at i:624707 original size:11 final size:10
Alignment explanation
Indices: 624673--624726 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
624663 ACTCTAAAAT
624673 ACACAGGTAA
1 ACACAGGTAA
* *
624683 ATCAAAGATATA
1 A-CACAGGTA-A
624695 ACACAGGTATA
1 ACACAGGTA-A
*
624706 ACATAGGTAA
1 ACACAGGTAA
624716 ACACAGGTAA
1 ACACAGGTAA
624726 A
1 A
624727 AATAACGGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
10 12 0.33
11 22 0.61
12 2 0.06
ACGTcount: A:0.52, C:0.15, G:0.17, T:0.17
Consensus pattern (10 bp):
ACACAGGTAA
Found at i:626501 original size:28 final size:28
Alignment explanation
Indices: 626470--626919 Score: 408
Period size: 28 Copynumber: 16.1 Consensus size: 28
626460 GAGCACCATG
* * *
626470 GTAAGCAAGACTTAGTGTAGGTACACTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
**
626498 GTAAAATAGACTTAGAT-TGGGTGCACTA
1 GTAAGCTAGACTTAG-TGTGGGTGCACTA
* * *
626526 GTAAGCTAGACTTAGTGTAGTTGCACAA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* * *
626554 GTAAGCTAGACATAGTGTGGGTACACAA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
*
626582 GTAAGCTATACTTAGTGTGGGCT-CACTA
1 GTAAGCTAGACTTAGTGTGGG-TGCACTA
* * * *
626610 GTAAGCCAGCCTTAGTGTGGGTGTAGT-
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* * * * **
626637 GATAAACTTGAC-TAATGGTAGGTGCGGTA
1 G-TAAGCTAGACTTAGT-GTGGGTGCACTA
* * *
626666 ATTAGCTAGACTTAGTGTGGGTGCAGTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* * * *
626694 ATTAGCTAGACTTGGTGTGGGTGCAGTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* * * *
626722 ATACGCTAGACTTAATGTGGGGGCACTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* *
626750 GTAAGCTAGCCTTAGTGTGGGTGCACTG
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* *
626778 GTAAGCTTGACTTA-TGGTAGGTGCACTA
1 GTAAGCTAGACTTAGT-GTGGGTGCACTA
* *
626806 GTAAGCTAGCCTTAGTGTGGGTGCACTG
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
* *
626834 GTAAGCTTGACTTA-TGGTAGGTGCACTA
1 GTAAGCTAGACTTAGT-GTGGGTGCACTA
* *
626862 GTAAGCTAGACATAGTGTGGGTGCCCTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
*
626890 GTAAGCTAGCCTTAGTGTGGGTGCACTA
1 GTAAGCTAGACTTAGTGTGGGTGCACTA
626918 GT
1 GT
626920 GTGGGTGCCC
Statistics
Matches: 341, Mismatches: 69, Indels: 24
0.79 0.16 0.06
Matches are distributed among these distances:
27 8 0.02
28 326 0.96
29 7 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
GTAAGCTAGACTTAGTGTGGGTGCACTA
Found at i:626891 original size:14 final size:14
Alignment explanation
Indices: 626874--626933 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
626864 AAGCTAGACA
626874 TAGTGTGGGTGCCC
1 TAGTGTGGGTGCCC
** * *
626888 TAGT-AAGCTAGCCT
1 TAGTGTGGGT-GCCC
*
626902 TAGTGTGGGTGCAC
1 TAGTGTGGGTGCCC
626916 TAGTGTGGGTGCCC
1 TAGTGTGGGTGCCC
626930 TAGT
1 TAGT
626934 AAGCTAGAAT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
13 2 0.06
14 30 0.88
15 2 0.06
ACGTcount: A:0.15, C:0.18, G:0.37, T:0.30
Consensus pattern (14 bp):
TAGTGTGGGTGCCC
Found at i:626933 original size:42 final size:42
Alignment explanation
Indices: 626874--626956 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
626864 AAGCTAGACA
**
626874 TAGTGTGGGTGCCCTAGTAAGCTAGCCTTAGTGTGGGTGCAC
1 TAGTGTGGGTGCCCTAGTAAGCTAGAATTAGTGTGGGTGCAC
626916 TAGTGTGGGTGCCCTAGTAAGCTAGAATTAGTGTGGGTGCA
1 TAGTGTGGGTGCCCTAGTAAGCTAGAATTAGTGTGGGTGCA
626957 GTGTGAGGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.19, C:0.16, G:0.36, T:0.29
Consensus pattern (42 bp):
TAGTGTGGGTGCCCTAGTAAGCTAGAATTAGTGTGGGTGCAC
Found at i:627081 original size:33 final size:33
Alignment explanation
Indices: 626996--627087 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
626986 TGGACTAAGG
*
626996 GGACTGCGGGGGGCACCTGACTCCTTTCTGTGA
1 GGACTGCGGGGGGCACCTGTCTCCTTTCTGTGA
*
627029 GGACTGCGGGGGGCACCTGTCTCCTTTCTGTGC
1 GGACTGCGGGGGGCACCTGTCTCCTTTCTGTGA
*
627062 GGACTGCGGGGGGCACCTGTATCCTT
1 GGACTGCGGGGGGCACCTGTCTCCTT
627088 GGTTTTCTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.10, C:0.28, G:0.37, T:0.25
Consensus pattern (33 bp):
GGACTGCGGGGGGCACCTGTCTCCTTTCTGTGA
Found at i:628940 original size:81 final size:81
Alignment explanation
Indices: 628812--628965 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
628802 CAAACAATCA
* * * * * * *
628812 ATCATTGTACAGTGGTCTCCAGCAATAAACCTTACAATGATACAGAGTAATACCAAAGGACTATA
1 ATCATTGAACAGTAGTCTCCAACAATAAACCTTAAAATAATAAAGAGTAATACCAAAGGACTACA
628877 ACAACCAATCAATCTG
66 ACAACCAATCAATCTG
* *
628893 ATCATTGAACAGTAGTCTCCAACAATAAACTTTAAAATAATAAAGAGTAATACCATAGGACTACA
1 ATCATTGAACAGTAGTCTCCAACAATAAACCTTAAAATAATAAAGAGTAATACCAAAGGACTACA
628958 ACAACCAA
66 ACAACCAA
628966 CAAAATTATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.23
Consensus pattern (81 bp):
ATCATTGAACAGTAGTCTCCAACAATAAACCTTAAAATAATAAAGAGTAATACCAAAGGACTACA
ACAACCAATCAATCTG
Found at i:635620 original size:44 final size:43
Alignment explanation
Indices: 635570--635657 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 43
635560 TTAGGATTAA
635570 AGCCATGGACATTTGCCGGGCGTCTTATTTGCTCGATGGTCTT
1 AGCCATGGACATTTGCCGGGCGTCTTATTTGCTCGATGGTCTT
*
635613 NAGCCATGGACATTTGCCGGGCGTCTTATTTTCTCGATGGTCTT
1 -AGCCATGGACATTTGCCGGGCGTCTTATTTGCTCGATGGTCTT
635657 A
1 A
635658 TGTGTTTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 1 0.02
44 42 0.98
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.35
Consensus pattern (43 bp):
AGCCATGGACATTTGCCGGGCGTCTTATTTGCTCGATGGTCTT
Found at i:635958 original size:125 final size:121
Alignment explanation
Indices: 635732--635979 Score: 433
Period size: 125 Copynumber: 2.0 Consensus size: 121
635722 TGTAGTTCGG
635732 AAAATGCAAATTCATTTAATTGTTGATATGAAGACATAAAGATATCTAAAGACTTTAAAATAAAT
1 AAAATGCAAATTCATTTAATTGTTGATATGAAGACATAAAGATATCTAAAGACTTTAAAATAAAT
*
635797 GTCCGAGAGGTTATGGGCTTTCTCGTCGCGAGACATGGAAAAAAAAATCTCTGTGAGGA
66 GTCCGAGAGGTTATGGGCGTTCTCGTCGCGAGACATGG---AAAAAATCTCTGTGAGGA
* *
635856 AAAATTGCAAATTCATTTAATTGTTTATATGAAGACATAAAGATATCTAAAGAGTTTAAAATAAA
1 AAAA-TGCAAATTCATTTAATTGTTGATATGAAGACATAAAGATATCTAAAGACTTTAAAATAAA
635921 TGTCCGAGAGGTTATGGGCGTTCTCGTCGCGAGACATGGAAAAAATCTCTGTGAGGA
65 TGTCCGAGAGGTTATGGGCGTTCTCGTCGCGAGACATGGAAAAAATCTCTGTGAGGA
635978 AA
1 AA
635980 CAGTTAATCT
Statistics
Matches: 120, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
122 20 0.17
124 4 0.03
125 96 0.80
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.29
Consensus pattern (121 bp):
AAAATGCAAATTCATTTAATTGTTGATATGAAGACATAAAGATATCTAAAGACTTTAAAATAAAT
GTCCGAGAGGTTATGGGCGTTCTCGTCGCGAGACATGGAAAAAATCTCTGTGAGGA
Found at i:639083 original size:46 final size:47
Alignment explanation
Indices: 639016--639105 Score: 137
Period size: 46 Copynumber: 1.9 Consensus size: 47
639006 AGTTCTTGAT
* *
639016 ATTCCTGTATTTGTTTTGATATTACATG-ACTTCACTCTGTGATGGC
1 ATTCCTGTATTTGTCTGGATATTACATGAACTTCACTCTGTGATGGC
* *
639062 ATTCCTGTATTTGTCTGGATATTACATGAATTTCACTCTTTGAT
1 ATTCCTGTATTTGTCTGGATATTACATGAACTTCACTCTGTGAT
639106 CATGGTGATG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 26 0.67
47 13 0.33
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.47
Consensus pattern (47 bp):
ATTCCTGTATTTGTCTGGATATTACATGAACTTCACTCTGTGATGGC
Found at i:639888 original size:30 final size:30
Alignment explanation
Indices: 639852--639910 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
639842 AATCATGATG
* * *
639852 TGGAGTCACATGTACATGTACCTGTAGAGC
1 TGGAGTCACATCTACATATACCTATAGAGC
639882 TGGAGTCACATCTACATATACCTATAGAG
1 TGGAGTCACATCTACATATACCTATAGAG
639911 GTTTTAGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (30 bp):
TGGAGTCACATCTACATATACCTATAGAGC
Found at i:640308 original size:30 final size:30
Alignment explanation
Indices: 640267--641200 Score: 1595
Period size: 30 Copynumber: 31.2 Consensus size: 30
640257 CTGTTTTCTG
* *
640267 GTGACTATAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640297 GTGACTGTAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640327 GTGACTGTAGAGGAGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640357 GTGACTATAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640387 GTGACTATAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640417 GTGACTATAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640447 GTGACTGTAGAGGAGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
* *
640477 GTGACTATAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640507 GTGACTGTAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640537 GTGACTGTAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640567 GTGACTGTAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640597 GTGACTGTAGAGGGGGTCTTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640627 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640657 GTGACTGTAGAGGGGGTCGTCATATAGCTA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640687 GTGACTGTAGAGGGGGTCATCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640717 GTGACTGTAGAGGGGGTCATCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640747 GTGACTGTAGAGGGGGTTGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640777 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640807 GTGACTGTAGAGGGGGTCGTCATATAGCCG
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640837 GTGACTGTAGAGGGGGTCATCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640867 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640897 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640927 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
640957 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
640987 GTGACTGTTGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
641017 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
641047 GTG--T-TAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
641074 GTGTCTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
*
641104 GTGACTGTAGAGGGGGTCATCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
641134 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
641164 GTGACTGTAGAGGGGGTCGTCATATAGCCA
1 GTGACTGTAGAGGGGGTCGTCATATAGCCA
641194 GTGACTG
1 GTGACTG
641201 ACTTTCTGTG
Statistics
Matches: 876, Mismatches: 25, Indels: 6
0.97 0.03 0.01
Matches are distributed among these distances:
27 26 0.03
28 1 0.00
29 1 0.00
30 848 0.97
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.25
Consensus pattern (30 bp):
GTGACTGTAGAGGGGGTCGTCATATAGCCA
Found at i:642388 original size:30 final size:30
Alignment explanation
Indices: 642336--642485 Score: 221
Period size: 30 Copynumber: 5.0 Consensus size: 30
642326 TAACCCCGGC
*
642336 ACACACAGGGAG-AGGTGCTATATAAGACAG
1 ACACACAGGG-GTAGGGGCTATATAAGACAG
* * *
642366 ACACAAAGGGGTAGGGGGTATATAAGACCG
1 ACACACAGGGGTAGGGGCTATATAAGACAG
642396 ACACACAGGGGTAGGGGCTATATAAGACAG
1 ACACACAGGGGTAGGGGCTATATAAGACAG
**
642426 ACACACAGGGGTAGGGGCTATATAAGACCC
1 ACACACAGGGGTAGGGGCTATATAAGACAG
*
642456 ACACACAGGGGTAGGGGCTATATAAAACAG
1 ACACACAGGGGTAGGGGCTATATAAGACAG
642486 TGGCAGGAGA
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 1 0.01
30 106 0.99
ACGTcount: A:0.37, C:0.17, G:0.32, T:0.13
Consensus pattern (30 bp):
ACACACAGGGGTAGGGGCTATATAAGACAG
Found at i:643813 original size:2 final size:2
Alignment explanation
Indices: 643806--643831 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
643796 TCAAAACTTC
643806 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
643832 GGGGGGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:643837 original size:1 final size:1
Alignment explanation
Indices: 643831--643857 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
643821 GTGTGTGTGT
643831 GGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGG
643858 AGGAGGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:651493 original size:57 final size:56
Alignment explanation
Indices: 651410--651681 Score: 332
Period size: 57 Copynumber: 4.8 Consensus size: 56
651400 CAAACGGGCC
* * *
651410 ACCCCC-ATAGAGGTCCTGTGTGAGAACTTCCCAGGTAAGTCTCATTTCCCCCCACA
1 ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTCACTT-CCCCCACA
* ** *
651466 CACCCCCAATGTAGGTCCTGT-TAAGAACTTCCCAGGTAAGTCTTGGCTTCCCTCACA
1 -ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTC-TCACTTCCCCCACA
* * * * *
651523 TCCCCCAATATAGGTCCTTTGTAAGAACTTTCCAGGTAAGTCTCGGCTTCCCTCACA
1 ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTC-ACTTCCCCCACA
* *
651580 TCCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTCACCTCCCCCCACA
1 ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTCA-CTTCCCCCACA
* *
651637 CACCCCCAATATAGGTCCTGTGTGAGAACTTCCCAAGTAAGTCTC
1 -ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTC
651682 GCCCCATAAA
Statistics
Matches: 189, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
56 18 0.10
57 116 0.61
58 55 0.29
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.25
Consensus pattern (56 bp):
ACCCCCAATATAGGTCCTGTGTAAGAACTTCCCAGGTAAGTCTCACTTCCCCCACA
Found at i:652850 original size:31 final size:31
Alignment explanation
Indices: 652818--653059 Score: 413
Period size: 31 Copynumber: 7.9 Consensus size: 31
652808 GGTCTGTGGG
*
652818 GACAATGTCGCCTCGTATCAGTCTGTCTGGG
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
652849 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
652880 GACAATGTCGCCTCG--T-A-TCTGTCTGGT
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
652907 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
*
652938 GACAATGTCGCCTCGTATCAGTCTTTC-GTGT
1 GACAATGTCGCCTCGTATCAGTCTGTCTG-GT
652969 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
*
653000 GACAATGTCGCCTCGTATCAGTCTGTCTGGG
1 GACAATGTCGCCTCGTATCAGTCTGTCTGGT
653031 GACAATGTCGCCTCGTATCAGTCTGTCTG
1 GACAATGTCGCCTCGTATCAGTCTGTCTG
653060 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
27 25 0.12
28 1 0.00
29 2 0.01
30 2 0.01
31 170 0.85
32 1 0.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (31 bp):
GACAATGTCGCCTCGTATCAGTCTGTCTGGT
Found at i:657740 original size:21 final size:20
Alignment explanation
Indices: 657719--657806 Score: 114
Period size: 21 Copynumber: 4.5 Consensus size: 20
657709 ATATACGGTA
657719 TATT-ATCATGTGATATCTG
1 TATTGATCATGTGATATCTG
*
657738 TATTTTATCATGTGATATCTG
1 TA-TTGATCATGTGATATCTG
657759 TATCTGATCATGTGATATCT-
1 TAT-TGATCATGTGATATCTG
657779 T-TTGATCATGTGATATCT-
1 TATTGATCATGTGATATCTG
657797 T-TTGATCATG
1 TATTGATCATG
657807 AATCTTATCA
Statistics
Matches: 65, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
18 26 0.40
19 3 0.05
20 4 0.06
21 32 0.49
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (20 bp):
TATTGATCATGTGATATCTG
Found at i:659474 original size:21 final size:20
Alignment explanation
Indices: 659453--659540 Score: 114
Period size: 21 Copynumber: 4.5 Consensus size: 20
659443 ATATACGGTA
659453 TATT-ATCATGTGATATCTG
1 TATTGATCATGTGATATCTG
*
659472 TATTTTATCATGTGATATCTG
1 TA-TTGATCATGTGATATCTG
659493 TATCTGATCATGTGATATCT-
1 TAT-TGATCATGTGATATCTG
659513 T-TTGATCATGTGATATCT-
1 TATTGATCATGTGATATCTG
659531 T-TTGATCATG
1 TATTGATCATG
659541 AATCTTATCA
Statistics
Matches: 65, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
18 26 0.40
19 3 0.05
20 4 0.06
21 32 0.49
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (20 bp):
TATTGATCATGTGATATCTG
Found at i:662207 original size:27 final size:26
Alignment explanation
Indices: 662162--662270 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 26
662152 AGCGGGGTCA
662162 AGATAGGTAA-CTATTCACCTGTACAAT
1 AGATAGGTAATCTA--CACCTGTACAAT
662189 AGATAGGTAATTCTACACCTGTACAAT
1 AGATAGGTAA-TCTACACCTGTACAAT
*
662216 AAATAGGTAAATCTACACCTGTACAAT
1 AGATAGGT-AATCTACACCTGTACAAT
* * *
662243 ATATAGGTAACCTTACGCCTGTACAAT
1 AGATAGGTAATC-TACACCTGTACAAT
662270 A
1 A
662271 TAGTGACAAG
Statistics
Matches: 74, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
26 3 0.04
27 66 0.89
28 2 0.03
29 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (26 bp):
AGATAGGTAATCTACACCTGTACAAT
Found at i:662271 original size:27 final size:27
Alignment explanation
Indices: 662177--662272 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
662167 GGTAACTATT
* *
662177 CACCTGTACAATAGATAGGTAATTCTA
1 CACCTGTACAATATATAGGTAAATCTA
*
662204 CACCTGTACAATAAATAGGTAAATCTA
1 CACCTGTACAATATATAGGTAAATCTA
*
662231 CACCTGTACAATATATAGGT-AACCTTA
1 CACCTGTACAATATATAGGTAAATC-TA
*
662258 CGCCTGTACAATATA
1 CACCTGTACAATATA
662273 GTGACAAGTT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 3 0.05
27 60 0.95
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
CACCTGTACAATATATAGGTAAATCTA
Found at i:685457 original size:28 final size:28
Alignment explanation
Indices: 685410--686905 Score: 955
Period size: 28 Copynumber: 56.2 Consensus size: 28
685400 NNNNNNNNNN
* *
685410 GATATTGATACCTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
*
685438 GATATTGATACTTCATATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
685466 GATATTGATATTTCATATTTAGCTCATA
1 GATATTGATACTTCACATTGAGCTCATG
** *
685494 GATATTGATACCACACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * *
685522 GATATTGATACTTCATATTTAGCTCATA
1 GATATTGATACTTCACATTGAGCTCATG
*
685550 GATATTGATACTTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
*
685578 GATATTGATACTTCATATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
685606 GATATTAATTCCTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* *
685634 GACATTGATACTTCATATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * *
685662 GATATTGATATTTCATATTGAGCTCATA
1 GATATTGATACTTCACATTGAGCTCATG
* *
685690 GATATTGATACCTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* *
685718 GATAGTGATACTTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * *
685746 GATATTGATACCTC-CTTTTTAGCTCATG
1 GATATTGATACTTCAC-ATTGAGCTCATG
* * * * * *
685774 AATGTTGATACATCATATTCAGCTCATT
1 GATATTGATACTTCACATTGAGCTCATG
*
685802 GATATCT--TACGT-ACATTGAG-TCAATG
1 GATAT-TGATACTTCACATTGAGCTC-ATG
* * * **
685828 GCTATTGATACCTCACATTGAGCTTACA
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
685856 GATATTGATACTTAATATTAAGATCATG
1 GATATTGATACTTCACATTGAGCTCATG
* *
685884 GATATTGATACTTCATATTGAGCTAATG
1 GATATTGATACTTCACATTGAGCTCATG
*
685912 GATATTGATTCTTCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * **
685940 AATAATAATAGC-TCACATTGAGCTTGTG
1 GATATTGATA-CTTCACATTGAGCTCATG
* *
685968 G--A-T-AT-CCT-ACATTAAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * *
685990 TATATTGATAAC-TCATATTGAGCTCATT
1 GATATTGAT-ACTTCACATTGAGCTCATG
686018 G--A-T-AT-C-TCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
** * * *
686040 GATATTGATAAGTCATATTGTGTTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* ** *
686068 G--A-T-AT-C-TCCCAAAGAGCTTATG
1 GATATTGATACTTCACATTGAGCTCATG
* * *
686090 GAAATTGATAAC-TCATATTGTGCTCATG
1 GATATTGAT-ACTTCACATTGAGCTCATG
* *
686118 G--A-T-AT-C-TCACTTTGAGCTCGTG
1 GATATTGATACTTCACATTGAGCTCATG
* *
686140 GATATTGATACCTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
686168 G--A-T-AT-C-TCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686190 GATATCGATAAC-TCATAGTGTGCTCATG
1 GATATTGAT-ACTTCACATTGAGCTCATG
* *
686218 G--A-T-AT-C-TCCCATTGAGCTCGTG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686240 GATATTGATACCTCGCATTGTGCTCATA
1 GATATTGATACTTCACATTGAGCTCATG
*
686268 GATATTGATACTTCACATTAAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
*
686296 GATATATTGATACTTCATATTGAGCTCATG
1 G--ATATTGATACTTCACATTGAGCTCATG
*
686326 G--A-T-AT-CTT-ACATTGAGCTTATG
1 GATATTGATACTTCACATTGAGCTCATG
*
686348 GATATTTGATACCTCACATTGAGCTCATG
1 GATA-TTGATACTTCACATTGAGCTCATG
* * *
686377 AATTTTGATACCTCACATT-ATGCTCATG
1 GATATTGATACTTCACATTGA-GCTCATG
686405 G--A-T-AT-C-TCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* *
686427 GATATTGATAAC-TCATATTGTGCTCATG
1 GATATTGAT-ACTTCACATTGAGCTCATG
*
686455 G--A-T-AT-C-TCACATTGAGCTCGTG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686477 GATATTGATACCTCATATTGTGCTCATA
1 GATATTGATACTTCACATTGAGCTCATG
* * *
686505 GATATTGATACTTTACATTTAGATCATG
1 GATATTGATACTTCACATTGAGCTCATG
686533 GATATTGATAGC-TCACATTGAGCTCATG
1 GATATTGATA-CTTCACATTGAGCTCATG
*
686561 G--A-T-AT-CTTC-CATAGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* *
686583 GATATTGATAAC-TCATATTGTGCTCATG
1 GATATTGAT-ACTTCACATTGAGCTCATG
* *
686611 GATA-T-AT-C-T--CATTGAGTTCATT
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686633 GATATTGATACCTCATATTGTGCTCATT
1 GATATTGATACTTCACATTGAGCTCATG
* * * * *
686661 AACACTGGTACCTCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686689 GACATTGATACTTCATATTTAGCTTATG
1 GATATTGATACTTCACATTGAGCTCATG
*
686717 GATATTGATACCTCACATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686745 GACT-TTAATACTTTATATTGAGCTCATT
1 GA-TATTGATACTTCACATTGAGCTCATG
686773 GATA-T--T--TT-ACATTGAGC-CAATG
1 GATATTGATACTTCACATTGAGCTC-ATG
* *
686795 GATATTGATACCTCATATTGAGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686823 AATATTGATACCTCCCATTGTGCTCAT-
1 GATATTGATACTTCACATTGAGCTCATG
*
686850 GA-A-T-AT-C-TCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
* * * *
686873 AATACTGATACCTCACATTGTGCTCATG
1 GATATTGATACTTCACATTGAGCTCATG
*
686901 AATAT
1 GATAT
686906 CTCACATTGT
Statistics
Matches: 1144, Mismatches: 223, Indels: 202
0.73 0.14 0.13
Matches are distributed among these distances:
21 1 0.00
22 179 0.16
23 15 0.01
24 37 0.03
25 25 0.02
26 46 0.04
27 24 0.02
28 770 0.67
29 21 0.02
30 26 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (28 bp):
GATATTGATACTTCACATTGAGCTCATG
Found at i:686010 original size:50 final size:50
Alignment explanation
Indices: 685879--686376 Score: 453
Period size: 50 Copynumber: 9.7 Consensus size: 50
685869 AATATTAAGA
* *
685879 TCATGGATATTGAT-ACTTCATATTGAGCTAATGGATATTGATTCTTCACATTGAGC
1 TCATGGATATTGATAAC-TCATATTGTGCTCATGG--A-T-A-TC-TCACATTGAGC
* * * * * * ** *
685935 TCATGAATAATAATAGCTCACATTGAGCTTGTGGATATC-CTACATTAAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTC-ACATTGAGC
* * *
685985 TCATGTATATTGATAACTCATATTGAGCTCATTGATATCTCACATTGAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
* * * **
686035 TCATGGATATTGATAAGTCATATTGTGTTCATGGATATCTCCCAAAGAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
* * *
686085 TTATGGAAATTGATAACTCATATTGTGCTCATGGATATCTCACTTTGAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
* * *
686135 TCGTGGATATTGATACCTCACATTGTGCTCATGGATATCTCACATTGAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
* * *
686185 TCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCCCATTGAGC
1 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
* * ** * *
686235 TCGTGGATATTGATACCTCGCATTGTGCTCATAGATATTGATACTTCACATTAAGC
1 TCATGGATATTGATAACTCATATTGTGCTCAT-G-GA-T-AT-C-TCACATTGAGC
* *
686291 TCATGGATATATTGAT-ACTTCATATTGAGCTCATGGATATCTTACATTGAGC
1 TCATGG--ATATTGATAAC-TCATATTGTGCTCATGGATATCTCACATTGAGC
* * * *
686343 TTATGGATATTTGATACCTCACATTGAGCTCATG
1 TCATGGATA-TTGATAACTCATATTGTGCTCATG
686377 AATTTTGATA
Statistics
Matches: 363, Mismatches: 65, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.00
50 248 0.68
51 24 0.07
52 17 0.05
53 3 0.01
54 5 0.01
55 2 0.01
56 40 0.11
57 3 0.01
58 20 0.06
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (50 bp):
TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGC
Found at i:686044 original size:22 final size:22
Alignment explanation
Indices: 685996--686244 Score: 102
Period size: 22 Copynumber: 10.2 Consensus size: 22
685986 CATGTATATT
* * *
685996 GATAACTCATATTGAGCTCATT
1 GATATCTCACATTGAGCTCATG
686018 GATATCTCACATTGAGCTCATG
1 GATATCTCACATTGAGCTCATG
* * * *
686040 GATATTGATAAGTCATATTGTGTTCATG
1 G--A-T-AT--CTCACATTGAGCTCATG
* ** *
686068 GATATCTCCCAAAGAGCTTATG
1 GATATCTCACATTGAGCTCATG
* *
686090 GAAATTGATAACTCATATTGTGCTCATG
1 G--A-T-AT--CTCACATTGAGCTCATG
* *
686118 GATATCTCACTTTGAGCTCGTG
1 GATATCTCACATTGAGCTCATG
*
686140 GATATTGATACCTCACATTGTGCTCATG
1 G--A-T-AT--CTCACATTGAGCTCATG
686168 GATATCTCACATTGAGCTCATG
1 GATATCTCACATTGAGCTCATG
* *
686190 GATATCGATAACTCATAGTGTGCTCATG
1 GATATC--T--CACAT--TGAGCTCATG
* *
686218 GATATCTCCCATTGAGCTCGTG
1 GATATCTCACATTGAGCTCATG
686240 GATAT
1 GATAT
686245 TGATACCTCG
Statistics
Matches: 169, Mismatches: 34, Indels: 48
0.67 0.14 0.19
Matches are distributed among these distances:
22 79 0.47
24 14 0.08
25 6 0.04
26 14 0.08
28 56 0.33
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (22 bp):
GATATCTCACATTGAGCTCATG
Found at i:686403 original size:237 final size:234
Alignment explanation
Indices: 686118--686615 Score: 755
Period size: 237 Copynumber: 2.1 Consensus size: 234
686108 TGTGCTCATG
* * * * *
686118 GATATCTCACTTTGAGCTCGTGGATATTGATACCTCACATTGTGCTCATGGATATCTCACATTGA
1 GATAACTCACATTGAGCTCATGAATATTGATACCTCACATTATGCTCATGGATATCTCACATTGA
*
686183 GCTCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCCCATTGAGCTCGTGGATATTGA
66 GCTCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCACATTGAGCTCGTGGATATTGA
* *
686248 TACCTCGCATTGTGCTCATAGATATTGATACTTCACATTAAGCTCATGGATATATTGATA-CTTC
131 TACCTCACATTGTGCTCATAGATATTGATACTTCACATTAAGATCATGG--ATATTGATAGC-TC
* * *
686312 ATATTGAGCTCATGGATATCTTACATTGAGCTTATGGATATTT
193 ACATTGAGCTCATGGATATCTTACATAGAGCTCATGGATA-TT
* *
686355 GATACCTCACATTGAGCTCATGAATTTTGATACCTCACATTATGCTCATGGATATCTCACATTGA
1 GATAACTCACATTGAGCTCATGAATATTGATACCTCACATTATGCTCATGGATATCTCACATTGA
* *
686420 GCTCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGCTCGTGGATATTGA
66 GCTCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCACATTGAGCTCGTGGATATTGA
* * *
686485 TACCTCATATTGTGCTCATAGATATTGATACTTTACATTTAGATCATGGATATTGATAGCTCACA
131 TACCTCACATTGTGCTCATAGATATTGATACTTCACATTAAGATCATGGATATTGATAGCTCACA
*
686550 TTGAGCTCATGGATATCTTCCATAGAGCTCATGGATATT
196 TTGAGCTCATGGATATCTTACATAGAGCTCATGGATATT
* * *
686589 GATAACTCATATTGTGCTCATGGATAT
1 GATAACTCACATTGAGCTCATGAATAT
686616 ATCTCATTGA
Statistics
Matches: 237, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
234 24 0.10
235 47 0.20
236 1 0.00
237 165 0.70
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (234 bp):
GATAACTCACATTGAGCTCATGAATATTGATACCTCACATTATGCTCATGGATATCTCACATTGA
GCTCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCACATTGAGCTCGTGGATATTGA
TACCTCACATTGTGCTCATAGATATTGATACTTCACATTAAGATCATGGATATTGATAGCTCACA
TTGAGCTCATGGATATCTTACATAGAGCTCATGGATATT
Found at i:686413 original size:22 final size:22
Alignment explanation
Indices: 686383--686481 Score: 92
Period size: 22 Copynumber: 4.2 Consensus size: 22
686373 CATGAATTTT
*
686383 GATACCTCACATT-ATGCTCATG
1 GATATCTCACATTGA-GCTCATG
686405 GATATCTCACATTGAGCTCATG
1 GATATCTCACATTGAGCTCATG
* *
686427 GATATTGATAACTCATATTGTGCTCATG
1 G--A-T-AT--CTCACATTGAGCTCATG
*
686455 GATATCTCACATTGAGCTCGTG
1 GATATCTCACATTGAGCTCATG
686477 GATAT
1 GATAT
686482 TGATACCTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
22 39 0.61
23 1 0.02
24 3 0.05
25 2 0.03
26 3 0.05
28 16 0.25
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (22 bp):
GATATCTCACATTGAGCTCATG
Found at i:686426 original size:50 final size:50
Alignment explanation
Indices: 686355--686827 Score: 407
Period size: 50 Copynumber: 9.1 Consensus size: 50
686345 ATGGATATTT
* * * * *
686355 GATACCTCACATTGAGCTCATGAATTTTGATACCTCACATTATGCTCATG
1 GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCATG
*
686405 GATATCTCACATTGAGCTCATGGATATTGATAACTCATATTGTGCTCATG
1 GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCATG
*
686455 GATATCTCACATTGAGCTCGTGGATATTGATACCTCATATTGTGCTCATAG
1 GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCAT-G
* * * * * * *
686506 ATATTGATACTTTACATTTAGATCATGGATATTGATAGCTCACATTGAGCTCATG
1 -GA-T-AT-C-TCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCATG
* *
686561 GATATCTTC-CATAGAGCTCATGGATATTGATAACTCATATTGTGCTCATG
1 GATATC-TCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCATG
* * * *
686611 GATATATCTCATTGAGTTCATTGATATTGATACCTCATATTGTGCTCATTAACACTG
1 GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGTG--C--T--CA-TG
* * * *
686668 G-TACCTCACATTGAGCTCATGGACATTGATACTTCATATT-TAGCTTATG
1 GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGT-GCTCATG
* * * * *
686717 GATATTGATACCTCACATTGAGCTCATGGACT-TTAATACTTTATATTGAGCTCATT
1 G--A-T-AT--CTCACATTGAGCTCATGGA-TATTGATACCTCATATTGTGCTCATG
* * *
686773 GATATTTTACATTGAGC-CAATGGATATTGATACCTCATATTGAGCTCATG
1 GATATCTCACATTGAGCTC-ATGGATATTGATACCTCATATTGTGCTCATG
*
686823 AATAT
1 GATAT
686828 TGATACCTCC
Statistics
Matches: 346, Mismatches: 51, Indels: 52
0.77 0.11 0.12
Matches are distributed among these distances:
49 7 0.02
50 202 0.58
51 4 0.01
52 7 0.02
53 4 0.01
54 7 0.02
55 3 0.01
56 109 0.32
57 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (50 bp):
GATATCTCACATTGAGCTCATGGATATTGATACCTCATATTGTGCTCATG
Found at i:686578 original size:106 final size:106
Alignment explanation
Indices: 686422--686833 Score: 321
Period size: 106 Copynumber: 3.9 Consensus size: 106
686412 CACATTGAGC
* * * *
686422 TCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACATTGAGCTCGTGGATATTGATA
1 TCATGGATATTGATAACTCACATTGAGCTCATGGATATCTCACATAGAGCTCATGGATATTGATA
*
686487 CCTCATATTGTGCTCATAGATATTGATACTTTACATTTAGA
66 ACTCATATTGTGCTCATAGATATTGATACTTTACATTTAGA
*
686528 TCATGGATATTGATAGCTCACATTGAGCTCATGGATATCTTC-CATAGAGCTCATGGATATTGAT
1 TCATGGATATTGATAACTCACATTGAGCTCATGGATATC-TCACATAGAGCTCATGGATATTGAT
* * *
686592 AACTCATATTGTGCTCATGGATA-T-AT-C--T-CATTGAGT
65 AACTCATATTGTGCTCATAGATATTGATACTTTACATTTAGA
* * * * * * *
686628 TCATTGATATTGATACCTCATATTGTGCTCATTAACACTGG-TACCTCACATTGAGCTCATGGAC
1 TCATGGATATTGATAACTCACATTGAG--C--T--CA-TGGATATCTCACATAGAGCTCATGGAT
* * * * * *
686692 ATTGAT-ACTTCATATT-TAGCTTATGGATATTGATACCTCACATTGAGC
59 ATTGATAAC-TCATATTGT-GCTCATAGATATTGATACTTTACATTTAGA
* * * * * * *
686740 TCATGGACT-TTAAT-ACTTTATATTGAGCTCATTGATATTTTACATTGAGC-CAATGGATATTG
1 TCATGGA-TATTGATAAC-TCACATTGAGCTCATGGATATCTCACATAGAGCTC-ATGGATATTG
* *
686802 ATACCTCATATTGAGCTCAT-GAATATTGATAC
63 ATAACTCATATTGTGCTCATAG-ATATTGATAC
686834 CTCCCATTGT
Statistics
Matches: 250, Mismatches: 32, Indels: 48
0.76 0.10 0.15
Matches are distributed among these distances:
100 29 0.12
101 1 0.00
102 1 0.00
103 1 0.00
104 3 0.01
105 10 0.04
106 166 0.66
107 7 0.03
108 3 0.01
109 1 0.00
110 1 0.00
111 1 0.00
112 25 0.10
113 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (106 bp):
TCATGGATATTGATAACTCACATTGAGCTCATGGATATCTCACATAGAGCTCATGGATATTGATA
ACTCATATTGTGCTCATAGATATTGATACTTTACATTTAGA
Found at i:686658 original size:78 final size:78
Alignment explanation
Indices: 686015--686968 Score: 406
Period size: 78 Copynumber: 12.3 Consensus size: 78
686005 TATTGAGCTC
* * * * * * * *
686015 ATTGATATCTCACATTGAGCTCATGGATATTGATAAGTCATATTGTGTTCATGGATATCTCCCAA
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
* * * *
686080 AGAGCTTATGGAA
66 TGAGCTCATTGAT
* * * * *
686093 ATTGATAACTCATATTGTGCTCATGG--A-T-AT--CTCACTTTGAGCTCGTGGATATTGATACC
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATA-T-AT--C
*
686152 TCACATTGTGCTCA-TG--
62 T--CATTGAGCTCATTGAT
* * * * * * *
686168 ---GATATCTCACATTGAGCTCATGGATATCGATAACTCATAGTGTGCTCATGGATATCTCCCAT
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
* *
686230 TGAGCTCGTGGAT
66 TGAGCTCATTGAT
* * ** *
686243 ATTGATACCTCGCATTGTGCTCATAGATATTGAT-ACTTCACATTAAGCTCATGGATATAT-TGA
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAAC-TCACATTGTGCTCATGGATATATCTCA
686306 -T-A-CTTCATATTGAGCT
65 TTGAGC-TC--ATTGA--T
* * * * * * * * *
686322 CATGGATATCTTACATTGAGCTTATGGATATTTGATACCTCACATTGAGCTCAT-GA-AT-TTTG
1 -ATTGATACCTCACATTGTGCTCATGGATA-TTGATAACTCACATTGTGCTCATGGATATATCTC
* *
686384 A-T-ACCTCACATTATGCT
64 ATTGAGCT--CA-T-TGAT
* * * * * *
686401 CATGGATATCTCACATTGAGCTCATGGATATTGATAACTCATATTGTGCTCATGGATATCTCACA
1 -ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCA
* *
686466 TTGAGCTCGTGGAT
65 TTGAGCTCATTGAT
* * * *
686480 ATTGATACCTCATATTGTGCTCATAGATATTGAT-ACTTTACATT-TAGATCATGGATATTGATA
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAAC-TCACATTGT-GCTCATGGATA-T-AT-
*
686543 GCTCACATTGAGCTCA-TG-G
61 -CT--CATTGAGCTCATTGAT
* * * *
686562 A-T-AT-CTTC-CATAGAGCTCATGGATATTGATAACTCATATTGTGCTCATGGATATATCTCAT
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
*
686623 TGAGTTCATTGAT
66 TGAGCTCATTGAT
* ** * * * * * *
686636 ATTGATACCTCATATTGTGCTCATTAACACTGGTACCTCACATTGAGCTCATGGACATTGATACT
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATA-T-AT-C-
* * *
686701 TCATATTTAGCTTATGGAT
62 TC--ATTGAGCTCATTGAT
* * * * * * *
686720 ATTGATACCTCACATTGAGCTCATGGACT-TTAAT-ACTTTATATTGAGCTCATTGATAT-TTTA
1 ATTGATACCTCACATTGTGCTCATGGA-TATTGATAAC-TCACATTGTGCTCATGGATATATCT-
*
686782 CATTGAGC-CAATGGAT
63 CATTGAGCTC-ATTGAT
* * * * * * * *
686798 ATTGATACCTCATATTGAGCTCATGAATATTGATACCTCCCATTGTGCTCATGAATATCTCACAT
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
*
686863 TGTGCTCA-TGAAT
66 TGAGCTCATTG-AT
* * * *
686876 ACTGATACCTCACATTGTGCTCAT-GA-A-T-AT--CTCACATTGTGCTCATGAATATCTCACAT
1 ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
* *
686935 TGTGCTCATTAAT
66 TGAGCTCATTGAT
*
686948 ATTGATACCTCACATTATGCT
1 ATTGATACCTCACATTGTGCT
686969 TAATGATTTC
Statistics
Matches: 662, Mismatches: 144, Indels: 146
0.70 0.15 0.15
Matches are distributed among these distances:
72 111 0.17
73 5 0.01
74 11 0.02
75 6 0.01
76 11 0.02
77 18 0.03
78 308 0.47
79 55 0.08
80 35 0.05
81 28 0.04
82 6 0.01
83 6 0.01
84 62 0.09
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (78 bp):
ATTGATACCTCACATTGTGCTCATGGATATTGATAACTCACATTGTGCTCATGGATATATCTCAT
TGAGCTCATTGAT
Found at i:686866 original size:22 final size:22
Alignment explanation
Indices: 686838--686949 Score: 161
Period size: 22 Copynumber: 4.8 Consensus size: 22
686828 TGATACCTCC
686838 CATTGTGCTCATGAATATCTCA
1 CATTGTGCTCATGAATATCTCA
686860 CATTGTGCTCATGAATACTGATACCTCA
1 CATTGTGCTCATG-A-A-T-AT--CTCA
686888 CATTGTGCTCATGAATATCTCA
1 CATTGTGCTCATGAATATCTCA
686910 CATTGTGCTCATGAATATCTCA
1 CATTGTGCTCATGAATATCTCA
*
686932 CATTGTGCTCATTAATAT
1 CATTGTGCTCATGAATAT
686950 TGATACCTCA
Statistics
Matches: 83, Mismatches: 1, Indels: 12
0.86 0.01 0.12
Matches are distributed among these distances:
22 56 0.67
23 1 0.01
24 3 0.04
25 2 0.02
26 3 0.04
27 1 0.01
28 17 0.20
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (22 bp):
CATTGTGCTCATGAATATCTCA
Found at i:686870 original size:50 final size:50
Alignment explanation
Indices: 686806--686927 Score: 208
Period size: 50 Copynumber: 2.4 Consensus size: 50
686796 ATATTGATAC
* * *
686806 CTCATATTGAGCTCATGAATATTGATACCTCCCATTGTGCTCATGAATAT
1 CTCACATTGTGCTCATGAATATTGATACCTCACATTGTGCTCATGAATAT
*
686856 CTCACATTGTGCTCATGAATACTGATACCTCACATTGTGCTCATGAATAT
1 CTCACATTGTGCTCATGAATATTGATACCTCACATTGTGCTCATGAATAT
686906 CTCACATTGTGCTCATGAATAT
1 CTCACATTGTGCTCATGAATAT
686928 CTCACATTGT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (50 bp):
CTCACATTGTGCTCATGAATATTGATACCTCACATTGTGCTCATGAATAT
Found at i:686985 original size:72 final size:72
Alignment explanation
Indices: 686838--686985 Score: 226
Period size: 72 Copynumber: 2.1 Consensus size: 72
686828 TGATACCTCC
* *
686838 CATTGTGCTCATGAATATCTCACATTGTGCTCATGAATACTGATACCTCACATTGTGCTCATGAA
1 CATTGTGCTCATGAATATCTCACATTGTGCTCATGAATACTGATACCTCACATTATGCTAATGAA
*
686903 TATCTCA
66 TATCTAA
* *
686910 CATTGTGCTCATGAATATCTCACATTGTGCTCATTAATATTGATACCTCACATTATGCTTAATG-
1 CATTGTGCTCATGAATATCTCACATTGTGCTCATGAATACTGATACCTCACATTATGC-TAATGA
*
686974 ATTTCTAA
65 ATATCTAA
686982 CATT
1 CATT
686986 ATGAGAACAG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
72 65 0.94
73 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (72 bp):
CATTGTGCTCATGAATATCTCACATTGTGCTCATGAATACTGATACCTCACATTATGCTAATGAA
TATCTAA
Found at i:690900 original size:31 final size:31
Alignment explanation
Indices: 690851--691258 Score: 534
Period size: 31 Copynumber: 13.2 Consensus size: 31
690841 CAGAAACTCT
* * * *
690851 TACCTTTGCTTTGAAGGCCTTACCAAGATT-
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
* * * *
690881 TAACCTGTGTTATGAAGGCCTTA-CCAAATTG
1 T-ACCTTTGGTATGAACGCCTTACCCAGATTG
* * *
690912 TACCTTTGGTATTAACGCCTTACCCAAACTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
*
690943 TACCTTTGGTATGAACGCCTTACCCATATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
* *
690974 TACCTTTAGTAAGAACGCCTTACCCAGATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
* **
691005 TACCTTTTGTATGAATTCCTTACCCAGATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
691036 TACCTTTGGTATGAACGCCTTACCCAGATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
*
691067 TACCTTTGGTATGAATGCCTTACCCAGATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
** * *
691098 TACCTTTGGTATGAATTCCTTACCTAAATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
691129 TACCTTTGGTATGAA-GACCTTACCCAGATTG
1 TACCTTTGGTATGAACG-CCTTACCCAGATTG
*
691160 TACCTTTGGTATGAACGCCTTACCCAGGTTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
* *
691191 TACCTTTGGTATGAATGCCTTACCCAGGTTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
* *
691222 AACCTTTGGTATGAACGTCTTACCCAGATTG
1 TACCTTTGGTATGAACGCCTTACCCAGATTG
691253 TACCTT
1 TACCTT
691259 ACCCAAACTG
Statistics
Matches: 336, Mismatches: 37, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
30 23 0.07
31 312 0.93
32 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (31 bp):
TACCTTTGGTATGAACGCCTTACCCAGATTG
Found at i:691261 original size:16 final size:16
Alignment explanation
Indices: 691240--691274 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
691230 GTATGAACGT
* *
691240 CTTACCCAGATTGTAC
1 CTTACCCAAACTGTAC
691256 CTTACCCAAACTGTAC
1 CTTACCCAAACTGTAC
691272 CTT
1 CTT
691275 TGGTATGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (16 bp):
CTTACCCAAACTGTAC
Found at i:691280 original size:78 final size:78
Alignment explanation
Indices: 691189--691336 Score: 235
Period size: 78 Copynumber: 1.9 Consensus size: 78
691179 TTACCCAGGT
* * * *
691189 TGTACCTTTGGTATGAATGCCTTACCCA-GGTTGAACCTTTGGTATGAACGTCTTACCCAGATTG
1 TGTACCTTTGGTATGAACGCCTTACCCATAG-TGAACCTTTAGTATGAACGCCTTACCCAGATTG
691253 TACCTTACCCAAAC
65 TACCTTACCCAAAC
*
691267 TGTACCTTTGGTATGAACGCCTTACCCATAGTGTACCTTTAGTATGAACGCCTTACCCAGATTGT
1 TGTACCTTTGGTATGAACGCCTTACCCATAGTGAACCTTTAGTATGAACGCCTTACCCAGATTGT
691332 ACCTT
66 ACCTT
691337 TGGTATGAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 63 0.98
79 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (78 bp):
TGTACCTTTGGTATGAACGCCTTACCCATAGTGAACCTTTAGTATGAACGCCTTACCCAGATTGT
ACCTTACCCAAAC
Found at i:691290 original size:31 final size:31
Alignment explanation
Indices: 691255--691548 Score: 473
Period size: 31 Copynumber: 9.5 Consensus size: 31
691245 CCAGATTGTA
* *
691255 CCTTACCCAAACTGTACCTTTGGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
* * *
691286 CCTTACCCATAGTGTACCTTTAGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
**
691317 CCTTACCCAGATTGTACCTTTGGTATGAATT
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
691348 CCTTACCCAGATTGTACCTTTGGTATGAA-G
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
691378 ACCTTACCCAGATTGTACCTTTGGTATGAACG
1 -CCTTACCCAGATTGTACCTTTGGTATGAACG
691410 CCTTACCCAGATTGTACCTTTGGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
*
691441 CCTTACCCAGGTTGTACCTTTGGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
*
691472 CCTTACCCAGGTTGTACCTTTGGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
*
691503 CCTTACCCAGGTTGTACCTTTGGTATGAACG
1 CCTTACCCAGATTGTACCTTTGGTATGAACG
*
691534 CCTTACCCAGGTTGT
1 CCTTACCCAGATTGT
691549 CATCGTCTGT
Statistics
Matches: 251, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
31 250 1.00
32 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (31 bp):
CCTTACCCAGATTGTACCTTTGGTATGAACG
Found at i:691336 original size:109 final size:109
Alignment explanation
Indices: 691145--691367 Score: 342
Period size: 109 Copynumber: 2.0 Consensus size: 109
691135 TGGTATGAAG
* * * * *
691145 ACCTTACCCAGATTGTACCTTTGGTATGAACGCCTTACCCAGGTTGTACCTTTGGTATGAATGCC
1 ACCTTACCCAAACTGTACCTTTGGTATGAACGCCTTACCCAAGTTGTACCTTTAGTATGAACGCC
*
691210 TTACCCAGGTTGAACCTTTGGTATGAACGT-CTTACCCAGATTGT
66 TTACCCAGATTGAACCTTTGGTATGAA-GTCCTTACCCAGATTGT
691254 ACCTTACCCAAACTGTACCTTTGGTATGAACGCCTTACCCATAG-TGTACCTTTAGTATGAACGC
1 ACCTTACCCAAACTGTACCTTTGGTATGAACGCCTTACCCA-AGTTGTACCTTTAGTATGAACGC
* *
691318 CTTACCCAGATTGTACCTTTGGTATGAATTCCTTACCCAGATTGT
65 CTTACCCAGATTGAACCTTTGGTATGAAGTCCTTACCCAGATTGT
691363 ACCTT
1 ACCTT
691368 TGGTATGAAG
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
108 1 0.01
109 102 0.98
110 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (109 bp):
ACCTTACCCAAACTGTACCTTTGGTATGAACGCCTTACCCAAGTTGTACCTTTAGTATGAACGCC
TTACCCAGATTGAACCTTTGGTATGAAGTCCTTACCCAGATTGT
Found at i:691896 original size:32 final size:32
Alignment explanation
Indices: 691860--692283 Score: 508
Period size: 32 Copynumber: 13.2 Consensus size: 32
691850 GCTGTGAGTT
* * *
691860 GACAGTTACCTGTACTTTCTTGGCAGTAAATG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* * * *
691892 GACAGATACCTGTATTTTGCTT-GCAGTAAACA
1 GACAGTTACCTGTACTTTG-TTGGCAGTGAACG
* * * * *
691924 GACAGTTACCTCTAATTTGTTGACAGTAAATG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* * * * *
691956 GACAGTTACCTATATTTTGTTGACAGTAAATG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* *
691988 GATAGTTACCTGTACTTTGTTGGCAGTGAATG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* * * *
692020 GAGAGTTACCTATATTTTGTTGGCAGTGAACA
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* *
692052 GACAGTTACCTGTACTTTGTTCGCAGTGAACA
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* * *
692084 GACAATTACCTGTACTTTATTGGCAGTGAATG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* *
692116 AACAGTTACCTGTACTTTGTTGACAGTGAACG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
*
692148 GACAGTTACCTGTACTTTGTTGACAGTGAACG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* *
692180 GACAGTTACCTGTACTTTGTTCGCAGTGAACA
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
* *
692212 GACAATTACCTGTACTTTGTTGACAGTGAACG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
*
692244 GACAGTTACCTGTACTTTGTTGGCGGTGAACG
1 GACAGTTACCTGTACTTTGTTGGCAGTGAACG
692276 GACAGTTA
1 GACAGTTA
692284 TCACACAGAT
Statistics
Matches: 342, Mismatches: 48, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
31 2 0.01
32 338 0.99
33 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (32 bp):
GACAGTTACCTGTACTTTGTTGGCAGTGAACG
Found at i:692730 original size:17 final size:17
Alignment explanation
Indices: 692708--692748 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
692698 CGTCTTCAAT
692708 ATCATCATCTCACCGTC
1 ATCATCATCTCACCGTC
*
692725 ATCATCATCTTACCGTC
1 ATCATCATCTCACCGTC
692742 ATCATCA
1 ATCATCA
692749 ATATCCGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.37, G:0.05, T:0.32
Consensus pattern (17 bp):
ATCATCATCTCACCGTC
Found at i:694171 original size:38 final size:38
Alignment explanation
Indices: 694120--694689 Score: 732
Period size: 38 Copynumber: 14.8 Consensus size: 38
694110 GTATATAACC
*
694120 TACCAGTGTGTTGGTACAATGGGAGTAATCATACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
* *
694158 TACCAGTGTGTTGGTACAATGAGAGT-ATACATGTATATAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAAT-C--G--TACAACA
*
694200 TACCAGTGTGTTGGTACAATGAGAGT-ATACATGTATACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAAT-C--G--TACAACA
* * *
694242 TACCAATTTGTTGGTACAATGGGAGTAATCATACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
*
694280 TACCAGTGTGTTGGTACAATGGGAGAAATCGTACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
694318 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
694356 TACCAGTGTGTTGGTACAATGGGAGTAATCGT--AACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
*
694392 TACGAGTGTGTTGGTACAATGGGAGTAATCGT--AACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
*
694428 TACGAGTGTGTTGGTACAATGGGAGTAATCGT--AACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
*
694464 TACGAGTGTGTTGGTACAATGGGAGTAATCGT--AACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
* *
694500 TACGAGTGTGTTGGTACAATGGGAGTAATGGTACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
694538 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
* *
694576 TACCAGTGTGTTGGTACAATGGAAGT-ATACATGTATTAAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAAT-C--GTA--CAACA
*
694618 TACCAGTGTGTTGGTACAATGGGAG-AATACAAGTATATAACA
1 TACCAGTGTGTTGGTACAATGGGAGTAAT-C--G--TACAACA
694660 TACCAGTGTGTTGGTACAATGGGAGTAATC
1 TACCAGTGTGTTGGTACAATGGGAGTAATC
694690 CACACAGCCG
Statistics
Matches: 493, Mismatches: 22, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
36 142 0.29
37 4 0.01
38 202 0.41
40 3 0.01
42 135 0.27
43 5 0.01
44 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (38 bp):
TACCAGTGTGTTGGTACAATGGGAGTAATCGTACAACA
Found at i:699081 original size:2 final size:2
Alignment explanation
Indices: 699074--699117 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
699064 TAAACAACAT
699074 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
699116 GA
1 GA
699118 AGGTTGGATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:700712 original size:2 final size:2
Alignment explanation
Indices: 700623--700692 Score: 106
Period size: 2 Copynumber: 35.5 Consensus size: 2
700613 CACTTTATTA
700623 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * *
700665 AG AG AG AG -G GG GG TG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
700693 TTTAACTCTG
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 64 0.98
ACGTcount: A:0.46, C:0.00, G:0.53, T:0.01
Consensus pattern (2 bp):
AG
Found at i:700858 original size:16 final size:16
Alignment explanation
Indices: 700836--700884 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
700826 TTGTTGTATT
700836 TGTGCGTGCGTTCGTAC
1 TGTGCGTGCGTTCGT-C
*
700853 -GTGCGTGTGTTCGTC
1 TGTGCGTGCGTTCGTC
*
700868 TGTGGGTGCGTTCGTC
1 TGTGCGTGCGTTCGTC
700884 T
1 T
700885 TGTATCGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.02, C:0.20, G:0.39, T:0.39
Consensus pattern (16 bp):
TGTGCGTGCGTTCGTC
Found at i:702098 original size:2 final size:2
Alignment explanation
Indices: 702091--702144 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
702081 CATACGTAAA
702091 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
702133 TC TC TC TC TC TC
1 TC TC TC TC TC TC
702145 CAATAGATGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:704239 original size:21 final size:21
Alignment explanation
Indices: 704215--704308 Score: 89
Period size: 21 Copynumber: 4.5 Consensus size: 21
704205 ATCTGCCACC
*
704215 ACTTGTAAGATAATTATGTCA
1 ACTTGTCAGATAATTATGTCA
* * * * *
704236 ACTTCTCATATGATAATGTCG
1 ACTTGTCAGATAATTATGTCA
*
704257 ACTTGTCAGATATTTATGTCA
1 ACTTGTCAGATAATTATGTCA
** **
704278 ACTTGTCAGATCTTTATGTTG
1 ACTTGTCAGATAATTATGTCA
704299 ACTTGTCAGA
1 ACTTGTCAGA
704309 AAATAACCAT
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (21 bp):
ACTTGTCAGATAATTATGTCA
Found at i:704274 original size:42 final size:42
Alignment explanation
Indices: 704215--704308 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
704205 ATCTGCCACC
* * *
704215 ACTTGTAAGATAATTATGTCAACTTCTCATATGATAATGTCG
1 ACTTGTCAGATAATTATGTCAACTTCTCAGATCATAATGTCG
* * * * *
704257 ACTTGTCAGATATTTATGTCAACTTGTCAGATCTTTATGTTG
1 ACTTGTCAGATAATTATGTCAACTTCTCAGATCATAATGTCG
704299 ACTTGTCAGA
1 ACTTGTCAGA
704309 AAATAACCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (42 bp):
ACTTGTCAGATAATTATGTCAACTTCTCAGATCATAATGTCG
Found at i:704500 original size:30 final size:30
Alignment explanation
Indices: 704465--704523 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
704455 TTTTGAACTG
* *
704465 CCGGTCAATAGACTTCGATCTATTGGACCT
1 CCGGTCAATAGACTGCGATATATTGGACCT
704495 CCGGTCAATAGACTGCGATATATTGGACC
1 CCGGTCAATAGACTGCGATATATTGGACC
704524 GGCAACGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (30 bp):
CCGGTCAATAGACTGCGATATATTGGACCT
Found at i:705114 original size:21 final size:21
Alignment explanation
Indices: 705090--705210 Score: 127
Period size: 21 Copynumber: 5.8 Consensus size: 21
705080 TAATAGGTCG
*
705090 ACATAAATATCTGACAAGTTT
1 ACATAAATATCTGACAAGTTA
**
705111 ACAT-AATCATCTGACAAGTCG
1 ACATAAAT-ATCTGACAAGTTA
*
705132 ACATAAAGATCTGACAAGTTA
1 ACATAAATATCTGACAAGTTA
* * **
705153 ACATAATTATCTGTCAAGTGG
1 ACATAAATATCTGACAAGTTA
*
705174 ACATAAAGATCTGACAAGTTA
1 ACATAAATATCTGACAAGTTA
* *
705195 ACATAATTATATGACA
1 ACATAAATATCTGACA
705211 GAAAAAATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
20 3 0.04
21 75 0.94
22 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (21 bp):
ACATAAATATCTGACAAGTTA
Found at i:705133 original size:42 final size:42
Alignment explanation
Indices: 705086--705210 Score: 196
Period size: 42 Copynumber: 3.0 Consensus size: 42
705076 TGTATAATAG
* * *
705086 GTCGACATAAATATCTGACAAGTTTACATAATCATCTGACAA
1 GTCGACATAAAGATCTGACAAGTTAACATAATTATCTGACAA
*
705128 GTCGACATAAAGATCTGACAAGTTAACATAATTATCTGTCAA
1 GTCGACATAAAGATCTGACAAGTTAACATAATTATCTGACAA
* *
705170 GTGGACATAAAGATCTGACAAGTTAACATAATTATATGACA
1 GTCGACATAAAGATCTGACAAGTTAACATAATTATCTGACA
705211 GAAAAAATAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (42 bp):
GTCGACATAAAGATCTGACAAGTTAACATAATTATCTGACAA
Found at i:705210 original size:63 final size:63
Alignment explanation
Indices: 705090--705210 Score: 143
Period size: 63 Copynumber: 1.9 Consensus size: 63
705080 TAATAGGTCG
** * * *
705090 ACATAAATATCTGACAAGTTTACATAATCATCTGACAAGTCGACATAAAGATCTGACAAGTTA
1 ACATAAATATCTGACAAGTGGACATAAACATCTGACAAGTCAACATAAAGATATGACAAGTTA
* * * * **
705153 ACATAATTATCTGTCAAGTGGACATAAAGATCTGACAAGTTAACATAATTATATGACA
1 ACATAAATATCTGACAAGTGGACATAAACATCTGACAAGTCAACATAAAGATATGACA
705211 GAAAAAATAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
63 47 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (63 bp):
ACATAAATATCTGACAAGTGGACATAAACATCTGACAAGTCAACATAAAGATATGACAAGTTA
Found at i:705400 original size:63 final size:62
Alignment explanation
Indices: 705265--705401 Score: 148
Period size: 63 Copynumber: 2.2 Consensus size: 62
705255 CACATTGTAA
* * * *** *
705265 GTCGACTTGTCAGATAATGATGTTGACTTGTCAGATGTTATGTCGTCTTGTCAAATAATTAT
1 GTCGACTTGTCAAATAATGATATGGACTTAAAAGATGTTATGTCGACTTGTCAAATAATTAT
** * * **
705327 GTCGTGTTGTCAAATAATTATATGGACTTAAAAGATGATTATGTCGACTTGTCAGATCCTTAT
1 GTCGACTTGTCAAATAATGATATGGACTTAAAAGATG-TTATGTCGACTTGTCAAATAATTAT
705390 GTCGACTTGTCA
1 GTCGACTTGTCA
705402 GAAAATATTA
Statistics
Matches: 59, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
62 28 0.47
63 31 0.53
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (62 bp):
GTCGACTTGTCAAATAATGATATGGACTTAAAAGATGTTATGTCGACTTGTCAAATAATTAT
Found at i:705402 original size:21 final size:21
Alignment explanation
Indices: 705265--705403 Score: 127
Period size: 21 Copynumber: 6.7 Consensus size: 21
705255 CACATTGTAA
*
705265 GTCGACTTGTCAGATAATGAT
1 GTCGACTTGTCAGATAATTAT
* *
705286 GTTGACTTGTCAGAT-GTTAT
1 GTCGACTTGTCAGATAATTAT
* *
705306 GTCGTCTTGTCAAATAATTAT
1 GTCGACTTGTCAGATAATTAT
** *
705327 GTCGTGTTGTCAAATAATTAT
1 GTCGACTTGTCAGATAATTAT
* * *** *
705348 ATGGACTTAAAAGATGATTAT
1 GTCGACTTGTCAGATAATTAT
**
705369 GTCGACTTGTCAGATCCTTAT
1 GTCGACTTGTCAGATAATTAT
705390 GTCGACTTGTCAGA
1 GTCGACTTGTCAGA
705404 AAATATTATT
Statistics
Matches: 93, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
20 15 0.16
21 78 0.84
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (21 bp):
GTCGACTTGTCAGATAATTAT
Found at i:705506 original size:21 final size:21
Alignment explanation
Indices: 705480--705571 Score: 96
Period size: 21 Copynumber: 4.4 Consensus size: 21
705470 CGTGAATAAG
* *
705480 TGACAAGTCGACTTAAAGAAC
1 TGACAAGTCGACATAAAGATC
* **
705501 TGACAAGT-GAACATGATTATC
1 TGACAAGTCG-ACATAAAGATC
*
705522 TGACAAGTCGACATCAAGATC
1 TGACAAGTCGACATAAAGATC
**
705543 TGACAAGTCGACATAATTATC
1 TGACAAGTCGACATAAAGATC
705564 TGACAAGT
1 TGACAAGT
705572 GGTGGCAGAT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
20 1 0.02
21 56 0.97
22 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (21 bp):
TGACAAGTCGACATAAAGATC
Found at i:705527 original size:42 final size:42
Alignment explanation
Indices: 705480--705571 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
705470 CGTGAATAAG
* *
705480 TGACAAGTCGACTTAAAGAACTGACAAGT-GAACATGATTATC
1 TGACAAGTCGACATAAAGAACTGACAAGTCG-ACATAATTATC
* *
705522 TGACAAGTCGACATCAAGATCTGACAAGTCGACATAATTATC
1 TGACAAGTCGACATAAAGAACTGACAAGTCGACATAATTATC
705564 TGACAAGT
1 TGACAAGT
705572 GGTGGCAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (42 bp):
TGACAAGTCGACATAAAGAACTGACAAGTCGACATAATTATC
Found at i:707778 original size:2 final size:2
Alignment explanation
Indices: 707771--707826 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
707761 ATATACATTA
*
707771 AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
707813 AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG
707827 CTTGGTCTCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:708298 original size:2 final size:2
Alignment explanation
Indices: 708291--708329 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
708281 AACCCGAGGT
708291 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
708330 TATTCATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:712127 original size:147 final size:147
Alignment explanation
Indices: 711860--712153 Score: 588
Period size: 147 Copynumber: 2.0 Consensus size: 147
711850 NNNNNNNNNN
711860 GTTTGAATATCCAACTGATGGGCGGTTGGATATTAAAAATATCCAACTGCCCATCAGTTGGATAT
1 GTTTGAATATCCAACTGATGGGCGGTTGGATATTAAAAATATCCAACTGCCCATCAGTTGGATAT
711925 TTATATATCCAACAACTGTTGATTGAATAGTGAAAATAAACATTGACAAAATACAATGGGTGACG
66 TTATATATCCAACAACTGTTGATTGAATAGTGAAAATAAACATTGACAAAATACAATGGGTGACG
711990 TCATAGAAGTTTTTTAA
131 TCATAGAAGTTTTTTAA
712007 GTTTGAATATCCAACTGATGGGCGGTTGGATATTAAAAATATCCAACTGCCCATCAGTTGGATAT
1 GTTTGAATATCCAACTGATGGGCGGTTGGATATTAAAAATATCCAACTGCCCATCAGTTGGATAT
712072 TTATATATCCAACAACTGTTGATTGAATAGTGAAAATAAACATTGACAAAATACAATGGGTGACG
66 TTATATATCCAACAACTGTTGATTGAATAGTGAAAATAAACATTGACAAAATACAATGGGTGACG
712137 TCATAGAAGTTTTTTAA
131 TCATAGAAGTTTTTTAA
712154 TAGGAAATAA
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
147 147 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (147 bp):
GTTTGAATATCCAACTGATGGGCGGTTGGATATTAAAAATATCCAACTGCCCATCAGTTGGATAT
TTATATATCCAACAACTGTTGATTGAATAGTGAAAATAAACATTGACAAAATACAATGGGTGACG
TCATAGAAGTTTTTTAA
Found at i:713253 original size:61 final size:61
Alignment explanation
Indices: 713183--713318 Score: 245
Period size: 61 Copynumber: 2.2 Consensus size: 61
713173 TATTTTGTAT
* *
713183 TATAATGCTGTATTACAAGATTTATCTGGTTCAGTGATGTCTTGTAATATAGACCAGGTTG
1 TATAATGCTGTATTACAAGATCTATCTGGTTCAGTGATGTCTTGTAACATAGACCAGGTTG
*
713244 TATAATGCTGTATTACAAGATCTGTCTGGTTCAGTGATGTCTTGTAACATAGACCAGGTTG
1 TATAATGCTGTATTACAAGATCTATCTGGTTCAGTGATGTCTTGTAACATAGACCAGGTTG
713305 TATAATGCTGTATT
1 TATAATGCTGTATT
713319 TTCTAAGATT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 72 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.39
Consensus pattern (61 bp):
TATAATGCTGTATTACAAGATCTATCTGGTTCAGTGATGTCTTGTAACATAGACCAGGTTG
Found at i:713412 original size:30 final size:30
Alignment explanation
Indices: 713377--713455 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
713367 GATTACATGG
713377 TTGTACAGTCCTATATTACGCAAGTTATGT
1 TTGTACAGTCCTATATTACGCAAGTTATGT
*
713407 TTGTACAGTCCTATATTACGTAAGTTATGT
1 TTGTACAGTCCTATATTACGCAAGTTATGT
713437 TTGTACAGTCCTATATTAC
1 TTGTACAGTCCTATATTAC
713456 AAAAGGATTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (30 bp):
TTGTACAGTCCTATATTACGCAAGTTATGT
Found at i:714825 original size:20 final size:18
Alignment explanation
Indices: 714800--714851 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
714790 GTAAAGTAAA
714800 ATTGTATCATATGATGCAAT
1 ATTGTATCATATGAT--AAT
* *
714820 ATTGTATTATAT-ATTAT
1 ATTGTATCATATGATAAT
*
714837 ATTGTTTCATATGAT
1 ATTGTATCATATGAT
714852 TTAATATGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 12 0.44
18 2 0.07
19 2 0.07
20 11 0.41
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.50
Consensus pattern (18 bp):
ATTGTATCATATGATAAT
Found at i:714847 original size:37 final size:35
Alignment explanation
Indices: 714800--714878 Score: 104
Period size: 37 Copynumber: 2.2 Consensus size: 35
714790 GTAAAGTAAA
*
714800 ATTGTATCATATGATGCAATATTGTATTATATATTAT
1 ATTGTATCATATGATGCAATATGGTA-TA-ATATTAT
* **
714837 ATTGTTTCATATGATTTAATATGGTATAATATTAT
1 ATTGTATCATATGATGCAATATGGTATAATATTAT
714872 ATTGTAT
1 ATTGTAT
714879 AATAAAATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 13 0.35
36 2 0.05
37 22 0.59
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (35 bp):
ATTGTATCATATGATGCAATATGGTATAATATTAT
Found at i:714882 original size:15 final size:16
Alignment explanation
Indices: 714818--714879 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
714808 ATATGATGCA
714818 ATATTGTATTATATATT
1 ATATTGTA-TATATATT
*
714835 ATATTGTTTCATATGATTT
1 ATATTGTAT-ATAT-A-TT
*
714854 AATATGGTATA-ATATT
1 -ATATTGTATATATATT
714870 ATATTGTATA
1 ATATTGTATA
714880 ATAAAATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
15 9 0.24
16 3 0.08
17 12 0.32
18 3 0.08
19 3 0.08
20 7 0.19
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (16 bp):
ATATTGTATATATATT
Found at i:714969 original size:30 final size:30
Alignment explanation
Indices: 714913--714971 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
714903 TAAAATTGCA
*
714913 TCGTATGATAATGTAAAGTATAATATTGTT
1 TCGTATGATAATGCAAAGTATAATATTGTT
* *
714943 TCGTATGATATTGCATAA-TATGATATTGT
1 TCGTATGATAATGCA-AAGTATAATATTGT
714972 ACTACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (30 bp):
TCGTATGATAATGCAAAGTATAATATTGTT
Found at i:715671 original size:12 final size:12
Alignment explanation
Indices: 715654--715699 Score: 83
Period size: 12 Copynumber: 3.8 Consensus size: 12
715644 TATTATATTG
715654 TATCATATGATA
1 TATCATATGATA
715666 TATCATATGATA
1 TATCATATGATA
715678 TATCATATGATA
1 TATCATATGATA
*
715690 CATCATATGA
1 TATCATATGA
715700 CACAATATTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (12 bp):
TATCATATGATA
Found at i:716394 original size:21 final size:21
Alignment explanation
Indices: 716368--716477 Score: 193
Period size: 21 Copynumber: 5.2 Consensus size: 21
716358 GTAGGGCGCT
*
716368 GTCGTCTGCAGGCTTGTTGTG
1 GTCGTCTGCTGGCTTGTTGTG
*
716389 GTCGTCTGCAGGCTTGTTGTG
1 GTCGTCTGCTGGCTTGTTGTG
*
716410 GTCGTCTGCTGGCTGGTTGTG
1 GTCGTCTGCTGGCTTGTTGTG
716431 GTCGTCTGCTGGCTTGTTGTG
1 GTCGTCTGCTGGCTTGTTGTG
716452 GTCGTCTGCTGGCTTGTTGTG
1 GTCGTCTGCTGGCTTGTTGTG
716473 GTCGT
1 GTCGT
716478 TGGAGAAGTT
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 86 1.00
ACGTcount: A:0.02, C:0.19, G:0.39, T:0.40
Consensus pattern (21 bp):
GTCGTCTGCTGGCTTGTTGTG
Found at i:718780 original size:2 final size:2
Alignment explanation
Indices: 718775--718825 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
718765 ACACACTAAC
718775 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
718817 AG AG AG AG A
1 AG AG AG AG A
718826 TTTAAGTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:722703 original size:2 final size:2
Alignment explanation
Indices: 722696--722735 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
722686 TTAAAAGCAT
722696 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
722736 TTTTCAGTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:736874 original size:61 final size:60
Alignment explanation
Indices: 736799--736980 Score: 212
Period size: 59 Copynumber: 3.0 Consensus size: 60
736789 CCAAACGTAA
* * * *
736799 ATTAGGGTCTTCCGTCTT-CAGCGGAAGACCCTTCTAT-TATT-GTAATGTTTCTTTTTCACTT
1 ATTAAGGTCTTCCGT-TTCCAACGGAAGACCCTTAT-TGTATTCGTAATGTTTCTTATT-A-TT
* * *
736860 TTTAAGGTCTTCCGTTTCCAACGGAAGA-CCTTATTGTTTTCGTACTGTTTCTTATTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCCTTATTGTATTCGTAATGTTTCTTATTATT
* *
736919 ATTAAGGTCTTCCGTTTCCAACGGAAGA-CCTTATTGTTTTCGTACTGTTTCTTATTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCCTTATTGTATTCGTAATGTTTCTTATTATT
736978 ATT
1 ATT
736981 NNNNNNNNNN
Statistics
Matches: 110, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
59 64 0.58
60 11 0.10
61 35 0.32
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (60 bp):
ATTAAGGTCTTCCGTTTCCAACGGAAGACCCTTATTGTATTCGTAATGTTTCTTATTATT
Found at i:736936 original size:59 final size:59
Alignment explanation
Indices: 736861--736980 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
736851 TTTTCACTTT
736861 TTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTCGTACTGTTTCTTATTATTA
1 TTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTCGTACTGTTTCTTATTATTA
736920 TTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTCGTACTGTTTCTTATTATTA
1 TTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTCGTACTGTTTCTTATTATTA
736979 TT
1 TT
736981 NNNNNNNNNN
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (59 bp):
TTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTCGTACTGTTTCTTATTATTA
Found at i:752251 original size:41 final size:41
Alignment explanation
Indices: 752194--752272 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
752184 ATTTATTTTC
*
752194 CTAAAACCTGTATACAACCTGGTATAGTTAAATTAAATTTG
1 CTAAAACCTGTATACAACATGGTATAGTTAAATTAAATTTG
752235 CTAAAACCTGTATACAACATGGTATAGTTAAATTAAAT
1 CTAAAACCTGTATACAACATGGTATAGTTAAATTAAAT
752273 AGGATTAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (41 bp):
CTAAAACCTGTATACAACATGGTATAGTTAAATTAAATTTG
Found at i:758287 original size:3 final size:3
Alignment explanation
Indices: 758279--758312 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
758269 ATAGTCATTA
*
758279 GTT GTT GTT GTT GCT GTT GTT GTT GTT GTT GTT G
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT G
758313 AGGCGCCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.35, T:0.62
Consensus pattern (3 bp):
GTT
Found at i:758704 original size:31 final size:30
Alignment explanation
Indices: 758664--758770 Score: 124
Period size: 31 Copynumber: 3.5 Consensus size: 30
758654 AAATGAAATC
758664 TCTTTGGACTCCGAGGCCAATGTCCCCGGTA
1 TCTTTGGACTCCGAGG-CAATGTCCCCGGTA
* * * *
758695 TCTTAGGACTCCGGAGTCAATGTCCTCGGGA
1 TCTTTGGACTCC-GAGGCAATGTCCCCGGTA
* *
758726 TCTTTGAACTCCGGAGGCAATGTCCCTGGTA
1 TCTTTGGACTCC-GAGGCAATGTCCCCGGTA
*
758757 CCTTTGGACTCCGA
1 TCTTTGGACTCCGA
758771 AGTCTTTGGA
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
30 2 0.03
31 58 0.92
32 3 0.05
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (30 bp):
TCTTTGGACTCCGAGGCAATGTCCCCGGTA
Found at i:758779 original size:16 final size:16
Alignment explanation
Indices: 758758--758790 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
758748 TCCCTGGTAC
758758 CTTTGGACTCCGAAGT
1 CTTTGGACTCCGAAGT
*
758774 CTTTGGACTCCGGAGT
1 CTTTGGACTCCGAAGT
758790 C
1 C
758791 AATGTCTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.30
Consensus pattern (16 bp):
CTTTGGACTCCGAAGT
Found at i:761542 original size:38 final size:38
Alignment explanation
Indices: 761491--761564 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
761481 ATGCGCCAAC
*
761491 GAATCACCTTGATTTCTATTTTTAAATGATTTATATAT
1 GAATCACCTTGATTTCTATTCTTAAATGATTTATATAT
761529 GAATCACCTTGATTTCTATTCTTAAATGATTTATAT
1 GAATCACCTTGATTTCTATTCTTAAATGATTTATAT
761565 GCTTTAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (38 bp):
GAATCACCTTGATTTCTATTCTTAAATGATTTATATAT
Done.