oyster.v9_M.fa.s43.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1583
Parameters: 2 7 7 80 10 50 500
Length:  1104062

Tables:   1   2   3   

This is table  3  of  3  ( 312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764151--764196	2	23.0	2	100	0	92	0	50	0	50	1.00
768251--768276	3	8.7	3	100	0	52	30	0	0	69	0.89
768976--769181	110	1.9	111	80	5	247	41	12	9	36	1.75
769160--769205	23	2.0	23	95	0	83	54	8	4	32	1.51
769242--769863	133	4.6	132	79	3	643	34	13	13	38	1.84
769370--769863	267	1.8	271	87	3	739	34	13	13	38	1.84
788163--788193	13	2.4	13	100	0	62	41	0	16	41	1.48
788497--788631	66	2.0	66	100	0	270	18	19	13	48	1.80
789961--791209	446	2.8	445	96	0	2225	37	16	13	33	1.87
794525--794580	4	14.0	4	100	0	112	50	0	25	25	1.50
798769--798867	4	24.8	4	97	0	189	50	0	24	25	1.49
803302--803829	163	3.2	164	88	3	754	33	15	25	25	1.95
808445--808668	116	2.0	112	86	3	313	33	18	17	30	1.94
809665--809696	11	2.9	11	95	0	55	34	9	28	28	1.88
809761--809813	22	2.4	22	83	0	70	20	28	11	39	1.87
810499--811115	178	3.4	180	92	2	990	37	17	15	29	1.90
813785--813826	20	2.1	20	95	0	75	30	14	30	23	1.94
825418--825481	31	2.1	30	88	8	94	57	7	1	32	1.37
825418--825481	30	2.1	31	88	8	96	57	7	1	32	1.37
850673--850787	21	5.4	21	88	3	151	41	13	15	28	1.86
850961--851069	21	5.1	21	78	3	101	35	11	17	34	1.87
850901--851069	85	2.0	84	83	3	214	35	12	17	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
854005--854039	2	17.5	2	100	0	70	0	48	0	51	1.00
857862--858272	29	14.2	29	68	13	130	45	21	12	20	1.84
857979--858023	21	2.1	21	95	0	81	46	20	15	17	1.84
871926--871991	2	33.0	2	93	0	114	53	0	46	0	1.00
873398--873504	53	2.0	52	96	1	196	40	19	5	33	1.75
886209--886260	20	2.6	20	90	0	86	26	17	28	26	1.97
887863--887899	13	2.8	14	84	12	51	51	0	0	48	1.00
908525--908578	2	27.5	2	92	3	92	46	0	53	0	1.00
912666--912699	3	11.3	3	87	0	50	61	2	0	35	1.11
916009--916046	20	1.9	20	94	0	67	60	5	34	0	1.19
920679--920709	1	31.0	1	93	0	53	3	96	0	0	0.21
920671--920709	12	3.2	12	92	7	62	5	92	2	0	0.46
926431--926475	2	22.5	2	100	0	90	48	0	51	0	1.00
933676--933757	20	4.1	20	93	0	137	42	10	21	24	1.85
934009--934065	2	29.0	2	96	3	107	50	0	49	0	1.00
936009--936080	4	18.0	4	70	16	51	48	23	2	25	1.64
940314--940347	17	2.0	17	88	0	50	20	26	14	38	1.91
941139--941566	166	2.6	165	93	0	730	32	15	26	26	1.95
952893--952932	18	2.2	19	95	4	73	52	10	0	37	1.35
954798--954827	15	1.9	16	93	6	53	33	20	6	40	1.78
958655--958680	12	2.2	12	100	0	52	0	34	23	42	1.54
969381--969421	19	2.2	19	86	0	55	21	4	36	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970618--970644	12	2.2	12	100	0	54	0	33	25	40	1.56
970778--971566	166	4.7	164	87	4	1048	29	15	24	30	1.96
970771--971566	329	2.4	334	87	4	1110	29	15	24	30	1.96
970771--971566	163	4.8	166	87	4	1077	29	15	24	30	1.96
977633--977704	36	2.1	34	84	5	90	37	36	4	22	1.73
977795--977948	61	2.5	62	86	2	195	40	29	3	26	1.72
977840--977904	28	2.4	28	84	7	80	41	29	1	27	1.65
980988--981022	14	2.6	14	86	4	54	28	0	0	71	0.86
987472--987580	53	2.1	53	98	0	209	45	13	7	33	1.71
994430--994460	16	1.9	16	93	0	53	48	16	0	35	1.46
1006129--1006160	11	2.9	11	100	0	64	56	28	6	9	1.55
1008448--1008941	169	2.9	170	88	2	758	27	27	15	30	1.96
1008192--1008941	339	2.2	331	82	7	883	27	26	15	31	1.96
1039142--1039181	19	2.0	20	90	4	64	37	10	0	52	1.35
1074427--1074816	164	2.3	165	82	5	455	26	23	15	35	1.94
1074823--1074979	2	78.5	2	98	0	305	0	0	49	50	1.00
1076095--1076631	165	3.3	163	80	10	458	27	22	15	34	1.94
1077120--1077529	173	2.4	170	90	2	635	30	20	19	29	1.97
1081933--1082429	103	4.9	103	78	7	459	37	21	11	28	1.89
1081941--1082400	201	2.3	201	84	5	590	36	21	12	29	1.90
1087260--1087295	4	8.8	4	96	3	63	77	22	0	0	0.76
1089802--1090120	27	11.9	27	92	2	525	34	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094425--1094567	27	5.3	27	94	1	234	33	30	15	20	1.93
1096588--1096669	8	10.2	8	82	5	85	1	37	25	35	1.64
1096599--1096673	4	18.8	4	89	5	62	0	36	26	37	1.57
1096595--1096674	16	5.0	16	86	6	108	0	37	26	36	1.57
1096588--1096674	12	7.2	12	84	0	93	1	37	25	35	1.64
1100810--1100858	21	2.4	22	80	13	59	36	10	20	32	1.86

Tables:   1   2   3

The End!