Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold619
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1099986
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.30
Warning! 119690 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:8458 original size:2 final size:2
Alignment explanation
Indices: 8451--8513 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
8441 TTTGTTTGTT
*
8451 AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8493 AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG A
8514 NNNNNNNNNN
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25125 original size:2 final size:2
Alignment explanation
Indices: 25118--25160 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
25108 GTATTTAAAC
25118 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
25160 A
1 A
25161 AATAGAGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25271 original size:22 final size:22
Alignment explanation
Indices: 25240--25282 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
25230 CGATATTTGT
* *
25240 ATTTAAAGAGGGAGAGGGAGAA
1 ATTTAAAGAGAGAGAGAGAGAA
*
25262 ATTTAGAGAGAGAGAGAGAGA
1 ATTTAAAGAGAGAGAGAGAGA
25283 GAGAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.14
Consensus pattern (22 bp):
ATTTAAAGAGAGAGAGAGAGAA
Found at i:25273 original size:2 final size:2
Alignment explanation
Indices: 25266--25306 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
25256 GGAGAAATTT
*
25266 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
25307 AATAGAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25380 original size:146 final size:146
Alignment explanation
Indices: 25120--25492 Score: 678
Period size: 146 Copynumber: 2.6 Consensus size: 146
25110 ATTTAAACAG
25120 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGATACATTTATTCATTCA
1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGATACATTTATTCATTCA
25185 TCGTGTAACATCGATAATTGATGTTTAAATTGATAATCACTCGGCCGATATTTGTATTTAAAGAG
66 TCGTGTAACATCGATAATTGATGTTTAAATTGATAATCACTCGGCCGATATTTGTATTTAAAGAG
25250 GGAGAGGGAGAAATTT
131 GGAGAGGGAGAAATTT
* *
25266 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAATAGAAATACATTTATTCATTCA
1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGATACATTTATTCATTCA
25331 TCGTGTAACATCGATAATTGATGTTTAAATTGATAATCACTCGGCCGATATTTGTATTTAAAGAG
66 TCGTGTAACATCGATAATTGATGTTTAAATTGATAATCACTCGGCCGATATTTGTATTTAAAGAG
*
25396 GGAGCGGGAGAAATTT
131 GGAGAGGGAGAAATTT
* *
25412 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT--ATTTATTCATTCA
1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGATACATTTATTCATTCA
*
25475 TTGTGTAACATCGATAAT
66 TCGTGTAACATCGATAAT
25493 AAGAAAATCA
Statistics
Matches: 219, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
144 30 0.14
146 189 0.86
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.23
Consensus pattern (146 bp):
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGATACATTTATTCATTCA
TCGTGTAACATCGATAATTGATGTTTAAATTGATAATCACTCGGCCGATATTTGTATTTAAAGAG
GGAGAGGGAGAAATTT
Found at i:25419 original size:2 final size:2
Alignment explanation
Indices: 25412--25460 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
25402 GGAGAAATTT
25412 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
25454 AG AG AG A
1 AG AG AG A
25461 TATTTATTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42754 original size:2 final size:2
Alignment explanation
Indices: 42749--42816 Score: 109
Period size: 2 Copynumber: 34.0 Consensus size: 2
42739 TTTCAAACAC
* * *
42749 CT CT CT CT CT CT CT CA CT CT CT CT CT CT TT CT CT CT CC CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
42791 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
42817 ATCCATTCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.01, C:0.50, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:45545 original size:163 final size:164
Alignment explanation
Indices: 45168--45662 Score: 726
Period size: 163 Copynumber: 3.0 Consensus size: 164
45158 GCGTGTCTTT
* * *
45168 AAAAATCTTCCTCTCAAGAACCACTGCACAAGAAATGCCAATTTTTACACAAAAGCTTGTATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATTTTTACAAAAAAG-TTGTATATA
* *
45233 TAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTAGGGA-CCCAGGCGGGGT
65 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAACT--GGACCCCAGGCGGGGT
* * *
45297 TCAAAATTTAACATAGAAATACATAAGAAAATGTTTT
128 TCAAAGTTTAACATAGAAATACATAGGAAAATGTTTA
* * * * * *
45334 TAAAATCTTCTTCTTAAGAACTACTGAACCAGAAATGCCAATTTTTACATAAAAGTT-TTTATAT
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATTTTTACAAAAAAGTTGTATATAT
*
45398 AGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAACTGAAACCCCAGGC-GGGTTC
66 AGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAACTG-GACCCCAGGCGGGGTTC
*
45462 AAAGTTTAACAGAGAAATACATAGGAAAATGTTTA
130 AAAGTTTAACATAGAAATACATAGGAAAATGTTTA
* * *
45497 AAAAATCATCTTCTCAAGAACCACTGCACCAGAAATGCCAATTTTTACACAAAAACTTGCATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATTTTTACA-AAAAAGTTGTATATA
*
45562 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAACTTGGGCCCCAGGCGGGGTT
65 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAAC-TGGACCCCAGGCGGGGTT
45627 CAAAGTTTAACATAGAAATACATAGGAAAAATGTTT
129 CAAAGTTTAACATAGAAATACATAGG-AAAATGTTT
45663 TCATGACTTT
Statistics
Matches: 295, Mismatches: 27, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
162 1 0.00
163 82 0.28
164 63 0.21
165 60 0.20
166 80 0.27
167 9 0.03
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (164 bp):
AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATTTTTACAAAAAAGTTGTATATAT
AGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCGGACCAAAACTGGACCCCAGGCGGGGTTCA
AAGTTTAACATAGAAATACATAGGAAAATGTTTA
Found at i:47918 original size:21 final size:21
Alignment explanation
Indices: 47889--47954 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
47879 ATTACTTATC
* *
47889 CATCTGAACAAATAGCTATTT
1 CATCCGAACAAATAGCTAATT
* *
47910 CGTCCGAACAAATA-TTAATT
1 CATCCGAACAAATAGCTAATT
*
47930 CATCCAAACAAATAGCTAATT
1 CATCCGAACAAATAGCTAATT
47951 CATC
1 CATC
47955 TAAAGAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
20 16 0.43
21 21 0.57
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (21 bp):
CATCCGAACAAATAGCTAATT
Found at i:48014 original size:21 final size:21
Alignment explanation
Indices: 47988--48188 Score: 76
Period size: 21 Copynumber: 9.7 Consensus size: 21
47978 AGAAATCCTA
47988 ATTCGTCCAAACAAATAACTT
1 ATTCGTCCAAACAAATAACTT
** *
48009 ATTCGTCCATGCAAAT--TTT
1 ATTCGTCCAAACAAATAACTT
* *
48028 AATTCGTCCAAACAAA-AAGATA
1 -ATTCGTCCAAACAAATAA-CTT
* **
48050 ATTCGTCCAAACAAAT-CCAA
1 ATTCGTCCAAACAAATAACTT
* *
48070 ATTCGTTCGAA-AAATAACCTT
1 ATTCGTCCAAACAAATAA-CTT
* * * * *
48091 -TCCATTCC-ACCAAAAAAGCTG
1 ATTC-GTCCAAACAAATAA-CTT
* * * **
48112 ATTTGTTCAAACAAAT-CCGA
1 ATTCGTCCAAACAAATAACTT
* *
48132 ATTCGTCTAAACAAATTACTT
1 ATTCGTCCAAACAAATAACTT
*
48153 ATTCGTCCGAACAAATAACTT
1 ATTCGTCCAAACAAATAACTT
* *
48174 ATTTGTCCGAACAAA
1 ATTCGTCCAAACAAA
48189 GAAGATTTAT
Statistics
Matches: 127, Mismatches: 41, Indels: 24
0.66 0.21 0.12
Matches are distributed among these distances:
19 6 0.05
20 40 0.31
21 74 0.58
22 7 0.06
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.28
Consensus pattern (21 bp):
ATTCGTCCAAACAAATAACTT
Found at i:48073 original size:41 final size:41
Alignment explanation
Indices: 47980--48075 Score: 113
Period size: 41 Copynumber: 2.3 Consensus size: 41
47970 TTGTCCTAAG
* * **
47980 AAATCCTAATTCGTCCAAACAAATAACTTATTCGTCCATGC
1 AAATCCTAATTCGTCCAAACAAATAAATAATTCGTCCAAAC
**
48021 AAATTTTAATTCGTCCAAACAAA-AAGATAATTCGTCCAAAC
1 AAATCCTAATTCGTCCAAACAAATAA-ATAATTCGTCCAAAC
*
48062 AAATCCAAATTCGT
1 AAATCCTAATTCGT
48076 TCGAAAAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 2 0.04
41 43 0.96
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (41 bp):
AAATCCTAATTCGTCCAAACAAATAAATAATTCGTCCAAAC
Found at i:48074 original size:20 final size:20
Alignment explanation
Indices: 47895--48075 Score: 121
Period size: 20 Copynumber: 8.8 Consensus size: 20
47885 TATCCATCTG
* *
47895 AACAAATAGCTATTTCGTCCG
1 AACAAATA-CTAATTCGTCCA
* *
47916 AACAAATATTAATTCATCCA
1 AACAAATACTAATTCGTCCA
* *
47936 AACAAATAGCTAATTCATCTA
1 AACAAATA-CTAATTCGTCCA
* * * *
47957 AAGAATTTCTAACTT-GTCCT
1 AACAAATACTAA-TTCGTCCA
* *
47977 AAGAAATCCTAATTCGTCCA
1 AACAAATACTAATTCGTCCA
*
47997 AACAAATAACTTATTCGTCCA
1 AACAAAT-ACTAATTCGTCCA
** **
48018 TGCAAATTTTAATTCGTCCA
1 AACAAATACTAATTCGTCCA
* *
48038 AACAAAAAGATAATTCGTCCA
1 AACAAATA-CTAATTCGTCCA
* *
48059 AACAAATCCAAATTCGT
1 AACAAATACTAATTCGT
48076 TCGAAAAATA
Statistics
Matches: 123, Mismatches: 32, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
19 2 0.02
20 63 0.51
21 58 0.47
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (20 bp):
AACAAATACTAATTCGTCCA
Found at i:51757 original size:50 final size:50
Alignment explanation
Indices: 51698--51801 Score: 167
Period size: 50 Copynumber: 2.1 Consensus size: 50
51688 TTCATGGTAC
51698 TTTCATCTTTACAAT-ATTTTATGTAGCAAAATATT-AAAAAGGGAAGAGTT
1 TTTCATCTTTAC-ATCATTTTATGTAGCAAAATATTGAAAAA-GGAAGAGTT
*
51748 TTTCATCTTTACATCATTTTATGTAGCAAAATATTGAAAAAGGAAGATTT
1 TTTCATCTTTACATCATTTTATGTAGCAAAATATTGAAAAAGGAAGAGTT
51798 TTTC
1 TTTC
51802 TGATTATTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
49 2 0.04
50 44 0.86
51 5 0.10
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (50 bp):
TTTCATCTTTACATCATTTTATGTAGCAAAATATTGAAAAAGGAAGAGTT
Found at i:52652 original size:2 final size:2
Alignment explanation
Indices: 52645--52678 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
52635 TAGATACCTT
*
52645 TA TA TA TA TA TA TA TA TA TA TA TA NTA AA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA T
52679 CAAAGCAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:59996 original size:13 final size:13
Alignment explanation
Indices: 59978--60002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59968 ACCTGTTCTG
59978 ATAAATTTGGAAT
1 ATAAATTTGGAAT
59991 ATAAATTTGGAA
1 ATAAATTTGGAA
60003 ACCATAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (13 bp):
ATAAATTTGGAAT
Found at i:61989 original size:439 final size:440
Alignment explanation
Indices: 61105--62864 Score: 3071
Period size: 439 Copynumber: 4.0 Consensus size: 440
61095 GTCCAGGCCG
* * * * *
61105 TAACTTAAATACCCTTTGACATTAAGATTTCAAACTTGAAACATAGGTAGATTGTATTAAGAATG
1 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTAAGAAGG
*
61170 AGTGCACGCCACCAAAAGTTTTGACCTTGACCTATTTTGTTCTTCAAGGTCAAGCTCTTCATAAA
66 AGTGCACGCAACCAAAAGTTTTGACCTTGA-CTATTTTGTTCTTCAAGGTCAAGCTCTTCATAAA
61235 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
130 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
*
61300 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACTTTGACCTAGAATTTTTATTTCA
195 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACCTTGACCTAGAATTTTTATTTCA
*
61365 AGGTCATATTAGAAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTGCAAA
260 AGGTCATATTAG-AAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAA
* *
61430 CTTTAAACAAAGAACAATAATAGTACACTTAGGTGTACTATTGAATTATATTTGATCTTGACCTT
324 CTTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCTT
61495 GTTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
389 GTTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
* *
61547 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAGCATAAGTAGATGGTATTAAGAAGG
1 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTAAGAAGG
* * *
61612 AGTGCACGCAATCAAAAGTTTTGACCTTGA-T-TTTATTTTGTTCAAGGTCAAGCTCTTCATAAA
66 AGTGCACGCAACCAAAAGTTTTGACCTTGACTATTT-TGTTCTTCAAGGTCAAGCTCTTCATAAA
61675 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
130 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
*
61740 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACTTTGACCTAGAATTTTTATTTCA
195 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACCTTGACCTAGAATTTTTATTTCA
61805 AGGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
260 AGGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
*
61870 TTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGATCTTGACCTTG
325 TTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCTTG
61935 TTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
390 TTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
*
61986 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTGAGAAGG
1 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTAAGAAGG
* * *
62051 AGTGCACACCACCAAAAGTTTTGACCTTGACCTATTTTGTTCTTCAAGGTCAAGCTTTTCATAAA
66 AGTGCACGCAACCAAAAGTTTTGACCTTGA-CTATTTTGTTCTTCAAGGTCAAGCTCTTCATAAA
* *
62116 AAATATTGTCCGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATCATGGAT
130 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
* *
62181 AGATGGTATATAACCTAGTTGAACCTTACCAAAATTTTTGACCTTGACCTAGAATTTTTATTTCA
195 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACCTTGACCTAGAATTTTTATTTCA
*
62246 AGGTCATATTAGAAAAAACTTCATTGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
260 AGGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
62311 TTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCTTG
325 TTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCTTG
62376 TTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
390 TTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
*
62427 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTTTTAAGAAGG
1 TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTAAGAAGG
* * *
62492 AGTGCACGCAATCAAAAGTTTTGACCTTGA-T-TTTATTTTGTTCAAGGTCAAGCTCTTCATAAA
66 AGTGCACGCAACCAAAAGTTTTGACCTTGACTATTT-TGTTCTTCAAGGTCAAGCTCTTCATAAA
62555 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
130 AAATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGAT
* * * *
62620 AGATGATATATAACCTAGTTGAACCTTACCAACATTTTTGACCTTGACCTAGAATTTTTATTTCA
195 AGATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACCTTGACCTAGAATTTTTATTTCA
62685 AGGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
260 AGGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAAC
* * * * *
62750 TTTAAACAAACAACAATTATAATACACTTAGGTGTAATATTGATTTATATATGACCTTGA-CTAT
325 TTTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCT-T
*
62814 GTTTTACTCAAGGTCAAATTAAGAAAAAGATAATAAAATTTTGTCTGGGTC
389 GTTTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTC
62865 TGGGTAACAT
Statistics
Matches: 1264, Mismatches: 48, Indels: 15
0.95 0.04 0.01
Matches are distributed among these distances:
438 5 0.00
439 581 0.46
440 169 0.13
441 420 0.33
442 89 0.07
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (440 bp):
TAACTTTAATACCCTTTGACATTAAGACTTCAAACTTGGAACATAGGTAGATGGTATTAAGAAGG
AGTGCACGCAACCAAAAGTTTTGACCTTGACTATTTTGTTCTTCAAGGTCAAGCTCTTCATAAAA
AATATTGTCTGGACCATAACACAAGACTCCTTTAACATACAGACTTTTAACTTGTATAATGGATA
GATGGTATATAACCTAGTTGAACCTTACCAAAACTGTTGACCTTGACCTAGAATTTTTATTTCAA
GGTCATATTAGAAAAAACTTCATAGTTCAACTCCTGAATATACTTTGACAGAAGGACTTCAAACT
TTAAACAAAGAACAATAATAATACACTTAGGTGTACTATTGAATTATATTTGACCTTGACCTTGT
TTTACTCAAGGTCAAATTAAGAAAAAAATAATAAAATTTTGTCTGGGTCA
Found at i:67144 original size:2 final size:2
Alignment explanation
Indices: 67137--67286 Score: 255
Period size: 2 Copynumber: 75.0 Consensus size: 2
67127 TTGAACATTC
* * *
67137 CT CT CT CT CT CT CT CT CT CT CT TT AT CT CT TT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
67179 CT GT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
67221 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
67263 CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT
67287 GCATATTGCC
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 139 1.00
ACGTcount: A:0.01, C:0.47, G:0.01, T:0.51
Consensus pattern (2 bp):
CT
Found at i:83634 original size:33 final size:32
Alignment explanation
Indices: 83551--83639 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 32
83541 ATATCTTACC
*
83551 AGGTAAATCACCCTATAATTACATGGAATACGA
1 AGGTAAATCA-CCTATAATTACATGGAATAAGA
* *
83584 AGGTAAAGCACCATATAATTACATGTAATAAGA
1 AGGTAAATCACC-TATAATTACATGGAATAAGA
*
83617 AGGTAAATCTTCCTATAATTACA
1 AGGTAAATC-ACCTATAATTACA
83640 GGTACGAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.04
33 45 0.92
34 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (32 bp):
AGGTAAATCACCTATAATTACATGGAATAAGA
Found at i:88044 original size:12 final size:13
Alignment explanation
Indices: 88027--88057 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
88017 GTGAACAATA
88027 TTTTTTATTTT-T
1 TTTTTTATTTTAT
88039 TTTTTTATTTTAT
1 TTTTTTATTTTAT
88052 TTTTTT
1 TTTTTT
88058 TTTGAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTATTTTAT
Found at i:88067 original size:18 final size:17
Alignment explanation
Indices: 88029--88068 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
88019 GAACAATATT
*
88029 TTTTATTTTTTTTTTTA
1 TTTTATTTTTTTTTTGA
88046 TTTTATTTTTTTTTTGA
1 TTTTATTTTTTTTTTGA
88063 GTTTTA
1 -TTTTA
88069 AAATTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTTTTTTGA
Found at i:90140 original size:42 final size:42
Alignment explanation
Indices: 90092--90172 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
90082 AATTAATTTA
*
90092 TTTTGCGTTAAATCGCAATAGT-TATTGCGTTTTAATGCAATC
1 TTTTGCGTTAAATCGCAAT-GTATATTGCGTTTAAATGCAATC
* * *
90134 TTTTGCGTTTATTCGCAATGTATTTTGCGTTTAAATGCA
1 TTTTGCGTTAAATCGCAATGTATATTGCGTTTAAATGCA
90173 GAAGATTGCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.06
42 32 0.94
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTTGCGTTAAATCGCAATGTATATTGCGTTTAAATGCAATC
Found at i:90251 original size:21 final size:20
Alignment explanation
Indices: 90094--90346 Score: 143
Period size: 20 Copynumber: 11.8 Consensus size: 20
90084 TTAATTTATT
90094 TTGCG-TTAAATCGCAATAGTTA
1 TTGCGTTTAAA-CGCAA-AG-TA
* * ** *
90116 TTGCGTTTTAATGCAATCTT
1 TTGCGTTTAAACGCAAAGTA
** *
90136 TTGCGTTTATTCGCAATGTA
1 TTGCGTTTAAACGCAAAGTA
*
90156 TTTTGCGTTTAAATGCAGAAG-A
1 --TTGCGTTTAAACGCA-AAGTA
* *
90178 TTGCGATAAAACGCAAAAAGTGA
1 TTGCGTTTAAACGC--AAAGT-A
*
90201 -TGCGATTAAACGCAAAGTGGA
1 TTGCGTTTAAACGCAAAGT--A
* *
90222 TTGCGTTAAAACGCAAAGTT
1 TTGCGTTTAAACGCAAAGTA
*
90242 TTGCGTTTAAACGCAATGTA
1 TTGCGTTTAAACGCAAAGTA
* *
90262 TTGCGTTTAATCGCAAAATTA
1 TTGCGTTTAAACGC-AAAGTA
*
90283 TTGCGTTTAAACGCAAAACAAATA
1 TTGCGTTTAAACGC---A-AAGTA
90307 TTGCGTTTAAACGCAAAGCTATTA
1 TTGCGTTTAAACGCAAAG----TA
90331 TTGCGTTTAAACGCAA
1 TTGCGTTTAAACGCAA
90347 TTTATTTTGC
Statistics
Matches: 182, Mismatches: 31, Indels: 34
0.74 0.13 0.14
Matches are distributed among these distances:
20 63 0.35
21 23 0.13
22 51 0.28
23 9 0.05
24 36 0.20
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (20 bp):
TTGCGTTTAAACGCAAAGTA
Found at i:90313 original size:24 final size:24
Alignment explanation
Indices: 90255--90346 Score: 118
Period size: 24 Copynumber: 3.9 Consensus size: 24
90245 CGTTTAAACG
*
90255 CAATGTATTGCGTTTAATCGC--AA
1 CAAT-TATTGCGTTTAAACGCAAAA
90278 -AATTATTGCGTTTAAACGCAAAA
1 CAATTATTGCGTTTAAACGCAAAA
* *
90301 CAAATATTGCGTTTAAACGCAAAG
1 CAATTATTGCGTTTAAACGCAAAA
*
90325 CTATTATTGCGTTTAAACGCAA
1 CAATTATTGCGTTTAAACGCAA
90347 TTTATTTTGC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
21 15 0.25
22 3 0.05
23 2 0.03
24 41 0.67
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (24 bp):
CAATTATTGCGTTTAAACGCAAAA
Found at i:90419 original size:21 final size:21
Alignment explanation
Indices: 90091--90482 Score: 201
Period size: 22 Copynumber: 18.1 Consensus size: 21
90081 AAATTAATTT
90091 ATTTTGCG-TTAAATCGCAATA
1 ATTTTGCGTTTAAA-CGCAATA
* * *
90112 GTTATTGCGTTTTAATGCAAT-
1 ATT-TTGCGTTTAAACGCAATA
* ** *
90133 CTTTTGCGTTTATTCGCAATGT
1 ATTTTGCGTTTAAACGCAAT-A
* *
90155 ATTTTGCGTTTAAATGC-AGA
1 ATTTTGCGTTTAAACGCAATA
** * * *
90175 AGATTGCGATAAAACGCAAAA
1 ATTTTGCGTTTAAACGCAATA
** *
90196 AGTGATGCGATTAAACGCAA-A
1 A-TTTTGCGTTTAAACGCAATA
* * *
90217 GTGGATTGCGTTAAAACGCAA-A
1 AT--TTTGCGTTTAAACGCAATA
*
90239 GTTTTGCGTTTAAACGCAAT-
1 ATTTTGCGTTTAAACGCAATA
* * *
90259 GTATTGCGTTTAATCGCAA-A
1 ATTTTGCGTTTAAACGCAATA
*
90279 ATTATTGCGTTTAAACGCAAAACAA
1 ATT-TTGCGTTTAAACGC--AA-TA
*
90304 ATATTGCGTTTAAACGCAA-A
1 ATTTTGCGTTTAAACGCAATA
*
90324 GCTATTATTGCGTTTAAACGCAATTT
1 ---ATT-TTGCGTTTAAACGCAA-TA
**
90350 ATTTTGCGAATAAACGCAA-A
1 ATTTTGCGTTTAAACGCAATA
* *
90370 CGTTTTTGCGGTTAAACGCAATA
1 --ATTTTGCGTTTAAACGCAATA
*
90393 ATTTTTGCGATTAAACGCAATA
1 A-TTTTGCGTTTAAACGCAATA
* * *
90415 ATTTTGCGATTAAATGCAATG
1 ATTTTGCGTTTAAACGCAATA
*
90436 ATTTTGCGATTAAACGCAATA
1 ATTTTGCGTTTAAACGCAATA
90457 ATTTTTGCG-TTAAATCGCAATCA
1 A-TTTTGCGTTTAAA-CGCAAT-A
90480 ATT
1 ATT
90483 CATTTGCTTA
Statistics
Matches: 292, Mismatches: 51, Indels: 55
0.73 0.13 0.14
Matches are distributed among these distances:
20 60 0.21
21 65 0.22
22 120 0.41
23 14 0.05
24 30 0.10
25 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (21 bp):
ATTTTGCGTTTAAACGCAATA
Found at i:90453 original size:64 final size:64
Alignment explanation
Indices: 90230--90482 Score: 205
Period size: 64 Copynumber: 3.9 Consensus size: 64
90220 GATTGCGTTA
* * * * **
90230 AAACGCAAA-G-TTTTGCGTTTAAACGCAAT--GTATTGCGTTTAATCGCAA-AATTATTGCGTT
1 AAACGCAAACGATTTTGCGATTAAACGCAATAATTTTTGCG-TTAAACGCAATAATT-TTGCGAA
90290 T
64 T
* * * * *
90291 AAACGCAAAACAAATATTGCGTTTAAACGCAA-AGCTATTATTGCGTTTAAACGCAATTTATTTT
1 AAACGC-AAAC-GATTTTGCGATTAAACGCAATA---ATTTTTGCG-TTAAACGCAA-TAATTTT
90355 GCGAAT
59 GCGAAT
* * *
90361 AAACGCAAACGTTTTTGCGGTTAAACGCAATAATTTTTGCGATTAAACGCAATAATTTTGCGATT
1 AAACGCAAACGATTTTGCGATTAAACGCAATAATTTTTGCG-TTAAACGCAATAATTTTGCGAAT
* *
90426 AAATGC-AATGATTTTGCGATTAAACGCAATAATTTTTGCGTTAAATCGCAATCAATT
1 AAACGCAAACGATTTTGCGATTAAACGCAATAATTTTTGCGTTAAA-CGCAAT-AATT
90483 CATTTGCTTA
Statistics
Matches: 159, Mismatches: 19, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
61 6 0.04
62 3 0.02
63 5 0.03
64 37 0.23
65 37 0.23
66 18 0.11
68 16 0.10
69 22 0.14
70 12 0.08
71 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (64 bp):
AAACGCAAACGATTTTGCGATTAAACGCAATAATTTTTGCGTTAAACGCAATAATTTTGCGAAT
Found at i:90454 original size:42 final size:41
Alignment explanation
Indices: 90230--90477 Score: 203
Period size: 43 Copynumber: 5.7 Consensus size: 41
90220 GATTGCGTTA
* * *
90230 AAACGCAAAGTTTTGCGTTTAAACGCAATG-TATTGCGTTT
1 AAACGCAAAATTTTGCGTTTAAACGCAATGATTTTGCGATT
* ** * *
90270 AATCGCAAAATTATTGCGTTTAAACGCAAAACAAATATTGCGTTT
1 AAACGCAAAATT-TTGCGTTTAAACGC--AA-TGATTTTGCGATT
* *
90315 AAACGCAAAGCTATTATTGCGTTTAAACGCAATTTATTTTGCGAAT
1 AAACGCAAA---ATT-TTGCGTTTAAACGCAA-TGATTTTGCGATT
* * *
90361 AAACGCAAACGTTTTTGCGGTTAAACGCAATAATTTTTGCGATT
1 AAACGCAAA--ATTTTGCGTTTAAACGCAATGA-TTTTGCGATT
* *
90405 AAACGCAATAATTTTGCGATTAAATGCAATGATTTTGCGATT
1 AAACGCAA-AATTTTGCGTTTAAACGCAATGATTTTGCGATT
90447 AAACGCAATAATTTTTGCG-TTAAATCGCAAT
1 AAACGCAA-AA-TTTTGCGTTTAAA-CGCAAT
90478 CAATTCATTT
Statistics
Matches: 175, Mismatches: 21, Indels: 21
0.81 0.10 0.10
Matches are distributed among these distances:
40 10 0.06
41 14 0.08
42 26 0.15
43 34 0.19
44 32 0.18
45 22 0.13
46 19 0.11
48 18 0.10
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (41 bp):
AAACGCAAAATTTTGCGTTTAAACGCAATGATTTTGCGATT
Found at i:91172 original size:21 final size:22
Alignment explanation
Indices: 91134--91193 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
91124 AATAATACCA
* * *
91134 ATTCTAATAAATGCTATCACTT
1 ATTCAAATAAGTGATATCACTT
* *
91156 TTTC-AATAGGTGATATCACTT
1 ATTCAAATAAGTGATATCACTT
91177 ATTCAAATAAGTGATAT
1 ATTCAAATAAGTGATAT
91194 AACAATTACA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (22 bp):
ATTCAAATAAGTGATATCACTT
Found at i:91571 original size:22 final size:22
Alignment explanation
Indices: 91546--91879 Score: 237
Period size: 22 Copynumber: 15.4 Consensus size: 22
91536 TTTTGCAATA
91546 AAACGCAATAACTATTGCGTTT
1 AAACGCAATAACTATTGCGTTT
* * * *
91568 AAACCCAATACCTTTTGCGATT
1 AAACGCAATAACTATTGCGTTT
** *
91590 AAACGCAACGATTATTGCGTTT
1 AAACGCAATAACTATTGCGTTT
* * *
91612 AATCGCAAAAACGT-TTGTGTTT
1 AAACGCAATAAC-TATTGCGTTT
** *
91634 ATTCGCAA-AAGTTATTGCGTTT
1 AAACGCAATAA-CTATTGCGTTT
91656 AAACGCAATATTACCT-TTGCGTTT
1 AAACGCAATA--A-CTATTGCGTTT
* * *
91680 AAACGCAATAATTTTTTGCGATT
1 AAACGCAATAA-CTATTGCGTTT
*
91703 AAACGCAAT-ACTTTTGCGTTT
1 AAACGCAATAACTATTGCGTTT
* *
91724 AAACGCAA-ACCT-TTGCGTTA
1 AAACGCAATAACTATTGCGTTT
**
91744 AAACGCAATGTTCT-TTGCGTTT
1 AAACGCAAT-AACTATTGCGTTT
91766 AAACGCAATAGA-TATTGCGTTT
1 AAACGCAATA-ACTATTGCGTTT
* *
91788 AATCGCAAT--CTTTTGCGTTT
1 AAACGCAATAACTATTGCGTTT
91808 AAACGCAA-AACTTATTGCGATTT
1 AAACGCAATAAC-TATTGCG-TTT
* *
91831 -AACGCAA-AA-GATTGCGATT
1 AAACGCAATAACTATTGCGTTT
**
91850 AAACGCAATAGTTATTGCGTTT
1 AAACGCAATAACTATTGCGTTT
91872 AAACGCAA
1 AAACGCAA
91880 AAGAAATTAT
Statistics
Matches: 248, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
19 2 0.01
20 44 0.18
21 25 0.10
22 136 0.55
23 21 0.08
24 18 0.07
25 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (22 bp):
AAACGCAATAACTATTGCGTTT
Found at i:91594 original size:44 final size:43
Alignment explanation
Indices: 91546--91879 Score: 288
Period size: 44 Copynumber: 7.7 Consensus size: 43
91536 TTTTGCAATA
* * *
91546 AAACGCAATAACTATTGCGTTTAAACCCAATACCTTTTGCGATT
1 AAACGCAATAATTATTGCGTTTAAACGCAATA-CTTTTGCGTTT
** * * * *
91590 AAACGCAACGATTATTGCGTTTAATCGCAAAAACGTTTGTGTTT
1 AAACGCAATAATTATTGCGTTTAAACGC-AATACTTTTGCGTTT
** *
91634 ATTCGCAA-AAGTTATTGCGTTTAAACGCAATATTACCTTTGCGTTT
1 AAACGCAATAA-TTATTGCGTTTAAACGC-A-A-TACTTTTGCGTTT
* *
91680 AAACGCAATAATTTTTTGCGATTAAACGCAATACTTTTGCGTTT
1 AAACGCAATAA-TTATTGCGTTTAAACGCAATACTTTTGCGTTT
** * **
91724 AAACGCAA-ACCT-TTGCGTTAAAACGCAATGTTCTTTGCGTTT
1 AAACGCAATAATTATTGCGTTTAAACGCAATACT-TTTGCGTTT
*
91766 AAACGCAATAGA-TATTGCGTTTAATCGCAAT-CTTTTGCGTTT
1 AAACGCAATA-ATTATTGCGTTTAAACGCAATACTTTTGCGTTT
*** *
91808 AAACGCAA-AACTTATTGCGATTT-AACGCAA-AAGATTGCGATT
1 AAACGCAATAA-TTATTGCG-TTTAAACGCAATACTTTTGCGTTT
*
91850 AAACGCAATAGTTATTGCGTTTAAACGCAA
1 AAACGCAATAATTATTGCGTTTAAACGCAA
91880 AAGAAATTAT
Statistics
Matches: 237, Mismatches: 38, Indels: 32
0.77 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 20 0.08
42 78 0.33
43 9 0.04
44 90 0.38
45 5 0.02
46 17 0.07
47 17 0.07
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (43 bp):
AAACGCAATAATTATTGCGTTTAAACGCAATACTTTTGCGTTT
Found at i:91784 original size:64 final size:64
Alignment explanation
Indices: 91646--91879 Score: 233
Period size: 64 Copynumber: 3.6 Consensus size: 64
91636 TCGCAAAAGT
*
91646 TATTGCGTTTAAACGCAATATTACCTTTGCGTTTAAACGCAATAATTTTTTGCGATTAAACGCAA
1 TATTGCGTTTAAACGC-A-A--ACCTTTGCGTTTAAACGCAATAATTCTTTGCGATTAAACGCAA
*
91711 TAC
62 TAA
* * * *
91714 TTTTGCGTTTAAACGCAAACCTTTGCGTTAAAACGCAAT-GTTCTTTGCGTTTAAACGCAATAGA
1 TATTGCGTTTAAACGCAAACCTTTGCGTTTAAACGCAATAATTCTTTGCGATTAAACGCAATA-A
* * * * *
91778 TATTGCGTTTAATCGCAATCTTTTGCGTTTAAACGCAA-AACTT-ATTGCGATTTAACGCAA-AA
1 TATTGCGTTTAAACGCAAACCTTTGCGTTTAAACGCAATAA-TTCTTTGCGATTAAACGCAATAA
* * **
91840 GATTGCGATTAAACGCAATAGTTATTGCGTTTAAACGCAA
1 TATTGCGTTTAAACGCAA-ACCT-TTGCGTTTAAACGCAA
91880 AAGAAATTAT
Statistics
Matches: 141, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
62 16 0.11
63 23 0.16
64 83 0.59
65 2 0.01
66 1 0.01
67 1 0.01
68 15 0.11
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (64 bp):
TATTGCGTTTAAACGCAAACCTTTGCGTTTAAACGCAATAATTCTTTGCGATTAAACGCAATAA
Found at i:91880 original size:64 final size:64
Alignment explanation
Indices: 91582--91881 Score: 224
Period size: 64 Copynumber: 4.6 Consensus size: 64
91572 CCAATACCTT
* * * * * *
91582 TTGCGATTAAACGCAACGA-TTATTGCGTTTAATCGCAAAAAC-GTTTGTGTTTATTCGCAA-AA
1 TTGCGTTTAAACGCAA-TACTTATTGCGTTTAAACGC-AAAACTTTTTGCGTTTA-ACGCAATAA
91644 GTTA
63 G--A
* *
91648 TTGCGTTTAAACGCAATA-TTACCTTTGCGTTTAAACGCAATAATTTTTTGCGATTAAACGCAAT
1 TTGCGTTTAAACGCAATACTTA---TTGCGTTTAAACGCAA-AACTTTTTGCG-TTTAACGCAAT
***
91712 ACTT
61 AAGA
* * **
91716 TTGCGTTTAAACGCAA-ACCT-TTGCGTTAAAACGC-AATGTTCTTTGCGTTTAAACGCAATAGA
1 TTGCGTTTAAACGCAATACTTATTGCGTTTAAACGCAAAACTT-TTTGCGTTT-AACGCAATA-A
*
91778 TA
63 GA
* *
91780 TTGCGTTTAATCGCAAT-CTT-TTGCGTTTAAACGCAAAACTTATTGCGATTTAACGCAA-AAGA
1 TTGCGTTTAAACGCAATACTTATTGCGTTTAAACGCAAAACTTTTTGCG-TTTAACGCAATAAGA
* *
91842 TTGCGATTAAACGCAATAGTTATTGCGTTTAAACGCAAAA
1 TTGCGTTTAAACGCAATACTTATTGCGTTTAAACGCAAAA
91882 GAAATTATTG
Statistics
Matches: 190, Mismatches: 28, Indels: 34
0.75 0.11 0.13
Matches are distributed among these distances:
62 22 0.12
63 19 0.10
64 74 0.39
65 11 0.06
66 15 0.08
67 3 0.02
68 32 0.17
69 10 0.05
70 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (64 bp):
TTGCGTTTAAACGCAATACTTATTGCGTTTAAACGCAAAACTTTTTGCGTTTAACGCAATAAGA
Found at i:91883 original size:42 final size:42
Alignment explanation
Indices: 91546--91882 Score: 225
Period size: 42 Copynumber: 7.8 Consensus size: 42
91536 TTTTGCAATA
** * ** *
91546 AAACGCAATAACTATTGCGTTTAAACCCAATACCTTTTGCGATT
1 AAACGCAATAGTTATTGCGTTTAAACGCAA-A-AGTTTGCGTTT
* * *
91590 AAACGCAA-CGATTATTGCGTTTAATCGCAAAAACGTTTGTGTTT
1 AAACGCAATAG-TTATTGCGTTTAAACGC-AAAA-GTTTGCGTTT
** * *
91634 ATTCGCAAAAGTTATTGCGTTTAAACGCAATATTACCTTTGCGTTT
1 AAACGCAATAGTTATTGCGTTTAAACGCAA-A--A-GTTTGCGTTT
* * * **
91680 AAACGCAATAATTTTTTGCGATTAAACGCAATACTTTTGCGTTT
1 AAACGCAAT-AGTTATTGCGTTTAAACGCAA-AAGTTTGCGTTT
** * *
91724 AAACGCAA-ACCT-TTGCGTTAAAACGC-AATGTTCTTTGCGTTT
1 AAACGCAATAGTTATTGCGTTTAAACGCAAAAG---TTTGCGTTT
* * ***
91766 AAACGCAATAGATATTGCGTTTAATCGCAATCTTTTGCGTTT
1 AAACGCAATAGTTATTGCGTTTAAACGCAAAAGTTTGCGTTT
* * * *
91808 AAACGCAAAACTTATTGCGATTT-AACGCAAAAGATTGCGATT
1 AAACGCAATAGTTATTGCG-TTTAAACGCAAAAGTTTGCGTTT
91850 AAACGCAATAGTTATTGCGTTTAAACGCAAAAG
1 AAACGCAATAGTTATTGCGTTTAAACGCAAAAG
91883 AAATTATTGT
Statistics
Matches: 230, Mismatches: 47, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 15 0.07
42 84 0.37
43 7 0.03
44 82 0.36
45 4 0.02
46 16 0.07
47 20 0.09
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (42 bp):
AAACGCAATAGTTATTGCGTTTAAACGCAAAAGTTTGCGTTT
Found at i:92172 original size:58 final size:58
Alignment explanation
Indices: 92082--92197 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
92072 GAATGTTAAT
*
92082 CACGTGTTAGGAACGGTTTAAATTGTAAACTTGTTTTCTGGACAGAGTGAATAGCGGC
1 CACGTGATAGGAACGGTTTAAATTGTAAACTTGTTTTCTGGACAGAGTGAATAGCGGC
*
92140 CACGTGATAGGAACGGTTTATATTGTAAACTTGTTTTCTGGACAGAGTGAATAGCGGC
1 CACGTGATAGGAACGGTTTAAATTGTAAACTTGTTTTCTGGACAGAGTGAATAGCGGC
92198 GACCAATCGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (58 bp):
CACGTGATAGGAACGGTTTAAATTGTAAACTTGTTTTCTGGACAGAGTGAATAGCGGC
Found at i:96358 original size:136 final size:135
Alignment explanation
Indices: 96092--96345 Score: 325
Period size: 136 Copynumber: 1.9 Consensus size: 135
96082 TTTTTTAATT
96092 AAATCAAAGTAATTTGATTTTTTATATTTTTCCTTGCTCCAAAATTATGCTTGTAATAACATTTT
1 AAATCAAAGTAATTTGATTTTTTATATTTTTCCTTGCTCCAAAATTATGCTTGTAATAACATTTT
* ** *** ** * *
96157 TTAATCGTACAGAACGTTAGATTTTACATTTTTATTAAATGTGTTTTGTTTCGAACATTATTTTG
66 TGAATCGTACAGAACGTTAGATTTTACATTTTTATTAAATGACTAACGCATC-AACATAAATTTG
96222 GTAAAC
130 GTAAAC
*
96228 AAATCAAGAG-AATTTGATTTTTTATATTTTTTCTTG-TCCAAAAATTATGCTTGTAATAACATT
1 AAATCAA-AGTAATTTGATTTTTTATATTTTTCCTTGCTCC-AAAATTATGCTTGTAATAACATT
*
96291 TTGAATGAATCGTACAGAACGTTAGATTTTACATTTTTATTCAAT-ACTAACGCAT
64 TT---TGAATCGTACAGAACGTTAGATTTTACATTTTTATTAAATGACTAACGCAT
96346 AATAAACATT
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
135 3 0.03
136 57 0.55
137 2 0.02
138 3 0.03
139 38 0.37
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (135 bp):
AAATCAAAGTAATTTGATTTTTTATATTTTTCCTTGCTCCAAAATTATGCTTGTAATAACATTTT
TGAATCGTACAGAACGTTAGATTTTACATTTTTATTAAATGACTAACGCATCAACATAAATTTGG
TAAAC
Found at i:109727 original size:2 final size:2
Alignment explanation
Indices: 109720--109774 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
109710 TGAAAACAAA
*
109720 CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
109762 CT CT CT CT CT CT C
1 CT CT CT CT CT CT C
109775 CCCAGTTGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:111590 original size:200 final size:200
Alignment explanation
Indices: 111247--111648 Score: 804
Period size: 200 Copynumber: 2.0 Consensus size: 200
111237 AGGACCGAAG
111247 ATACCCCATAATAAGCATTCAATGCTTAAATCTATCTAATAATACAGCTTATATTATAACAGCTT
1 ATACCCCATAATAAGCATTCAATGCTTAAATCTATCTAATAATACAGCTTATATTATAACAGCTT
111312 GTAGAAAACGCATCTCTGCTTGGCGTATTTCATTTGTGTGGAACGCATGTCTAAGGTATGTCCAA
66 GTAGAAAACGCATCTCTGCTTGGCGTATTTCATTTGTGTGGAACGCATGTCTAAGGTATGTCCAA
111377 CTCCCGTATAACACATGAAATGTTTGTTACAAAAATGATAAATTTAAGTTGGATATGAAACGAAG
131 CTCCCGTATAACACATGAAATGTTTGTTACAAAAATGATAAATTTAAGTTGGATATGAAACGAAG
111442 ATCGT
196 ATCGT
111447 ATACCCCATAATAAGCATTCAATGCTTAAATCTATCTAATAATACAGCTTATATTATAACAGCTT
1 ATACCCCATAATAAGCATTCAATGCTTAAATCTATCTAATAATACAGCTTATATTATAACAGCTT
111512 GTAGAAAACGCATCTCTGCTTGGCGTATTTCATTTGTGTGGAACGCATGTCTAAGGTATGTCCAA
66 GTAGAAAACGCATCTCTGCTTGGCGTATTTCATTTGTGTGGAACGCATGTCTAAGGTATGTCCAA
111577 CTCCCGTATAACACATGAAATGTTTGTTACAAAAATGATAAATTTAAGTTGGATATGAAACGAAG
131 CTCCCGTATAACACATGAAATGTTTGTTACAAAAATGATAAATTTAAGTTGGATATGAAACGAAG
111642 ATCGT
196 ATCGT
111647 AT
1 AT
111649 GTTATAACGC
Statistics
Matches: 202, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 202 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (200 bp):
ATACCCCATAATAAGCATTCAATGCTTAAATCTATCTAATAATACAGCTTATATTATAACAGCTT
GTAGAAAACGCATCTCTGCTTGGCGTATTTCATTTGTGTGGAACGCATGTCTAAGGTATGTCCAA
CTCCCGTATAACACATGAAATGTTTGTTACAAAAATGATAAATTTAAGTTGGATATGAAACGAAG
ATCGT
Found at i:118821 original size:2 final size:2
Alignment explanation
Indices: 118814--118873 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
118804 TATTGATGTG
118814 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
118856 CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT
118874 GTTTTGGTGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:119604 original size:21 final size:21
Alignment explanation
Indices: 119560--119658 Score: 173
Period size: 21 Copynumber: 4.8 Consensus size: 21
119550 ATTCAAATAT
*
119560 TTGTACCTATCTTCAAAT-AA
1 TTGTACCTATCTTCAATTCAA
119580 TTGTACCTATCTTCAATTCAA
1 TTGTACCTATCTTCAATTCAA
119601 TTGTACCTATCTTCAATTCAA
1 TTGTACCTATCTTCAATTCAA
*
119622 TTGTACCTATCTTCAATTTAA
1 TTGTACCTATCTTCAATTCAA
119643 TTGTACCTATCTTCAA
1 TTGTACCTATCTTCAA
119659 ATTGAATTAG
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
20 17 0.22
21 59 0.78
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.43
Consensus pattern (21 bp):
TTGTACCTATCTTCAATTCAA
Found at i:119696 original size:43 final size:42
Alignment explanation
Indices: 119635--119724 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 42
119625 TACCTATCTT
* *
119635 CAATTTAATTGTACCTATCTTCAAATTGAATTAG-AGATAGGTA
1 CAATTCAATTATACCTATCTT-AAATT-AATTAGAAGATAGGTA
* * *
119678 CAATTCAATTATACCTATCTTTAATTCATTTGAAGATAGGTA
1 CAATTCAATTATACCTATCTTAAATTAATTAGAAGATAGGTA
119720 CAATT
1 CAATT
119725 GATTTGAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.10
42 18 0.44
43 19 0.46
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (42 bp):
CAATTCAATTATACCTATCTTAAATTAATTAGAAGATAGGTA
Found at i:119697 original size:64 final size:63
Alignment explanation
Indices: 119563--119703 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 63
119553 CAAATATTTG
* * * * *
119563 TACCTATCTTCAA-ATAATTGTACCTATCTTCAATTCAATTGTACCTATCTTCAATTCAATTG
1 TACCTATCTTCAATTTAATTGTACCTATCTTCAATTCAATTGTACATAGCTACAATTCAATTA
* * *
119625 TACCTATCTTCAATTTAATTGTACCTATCTTCAAATTGAATTAG-AGATAGGTACAATTCAATTA
1 TACCTATCTTCAATTTAATTGTACCTATCTTC-AATTCAATT-GTACATAGCTACAATTCAATTA
*
119689 TACCTATCTTTAATT
1 TACCTATCTTCAATT
119704 CATTTGAAGA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 13 0.19
63 17 0.25
64 36 0.54
65 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (63 bp):
TACCTATCTTCAATTTAATTGTACCTATCTTCAATTCAATTGTACATAGCTACAATTCAATTA
Found at i:119793 original size:21 final size:21
Alignment explanation
Indices: 119707--119800 Score: 125
Period size: 21 Copynumber: 4.2 Consensus size: 21
119697 TTTAATTCAT
*
119707 TTGAAGATAGGTACAATTGAT
1 TTGAAGATAGGTACAATTGAA
119728 TTGAAGATAGGTACAAATGCAATGAA
1 TTGAAGATAGGTAC-AAT----TGAA
119754 TTGAAGATAGGTACAATTGAA
1 TTGAAGATAGGTACAATTGAA
*
119775 TTAAAGATAGGTACAATTGAA
1 TTGAAGATAGGTACAATTGAA
119796 TTGAA
1 TTGAA
119801 CCTATCTTCA
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
21 42 0.65
22 3 0.05
25 3 0.05
26 17 0.26
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (21 bp):
TTGAAGATAGGTACAATTGAA
Found at i:120268 original size:17 final size:17
Alignment explanation
Indices: 120243--120276 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
120233 ATATATAGTG
*
120243 ACCCTAACTACGTCACT
1 ACCCAAACTACGTCACT
*
120260 ACCCAAACTCCGTCACT
1 ACCCAAACTACGTCACT
120277 TTTGGGGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.44, G:0.06, T:0.21
Consensus pattern (17 bp):
ACCCAAACTACGTCACT
Found at i:120531 original size:21 final size:21
Alignment explanation
Indices: 120499--120567 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
120489 TAGATATGTC
*
120499 TGAATTGAACCTATCTTCAAA
1 TGAATTGTACCTATCTTCAAA
* *
120520 TCAATTGTACCTATCTTTAAA
1 TGAATTGTACCTATCTTCAAA
*
120541 TGAATTTTACCTATCTTCAAA
1 TGAATTGTACCTATCTTCAAA
120562 TGAATT
1 TGAATT
120568 AGAGATAGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (21 bp):
TGAATTGTACCTATCTTCAAA
Found at i:120595 original size:42 final size:42
Alignment explanation
Indices: 120549--120637 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
120539 AATGAATTTT
120549 ACCTATCTTCAAATGAATT-AGAGATAGGTATAATTCAATTGA
1 ACCTATCTTCAAATGAATTGA-AGATAGGTATAATTCAATTGA
* * * *
120591 ACCTATCTTTAATTGAATTGAAGATAGGTATAATTCATTTGT
1 ACCTATCTTCAAATGAATTGAAGATAGGTATAATTCAATTGA
120633 ACCTA
1 ACCTA
120638 GGTATAATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (42 bp):
ACCTATCTTCAAATGAATTGAAGATAGGTATAATTCAATTGA
Found at i:120624 original size:21 final size:21
Alignment explanation
Indices: 120572--120687 Score: 83
Period size: 21 Copynumber: 5.6 Consensus size: 21
120562 TGAATTAGAG
120572 ATAGGTATAATTCAATTGAAC
1 ATAGGTATAATTCAATTGAAC
* ** * * *
120593 CTATCTTTAATTGAATTGAAG
1 ATAGGTATAATTCAATTGAAC
* *
120614 ATAGGTATAATTCATTTGTAC
1 ATAGGTATAATTCAATTGAAC
* * *
120635 CTAGGTATAATTCATTTGTAC
1 ATAGGTATAATTCAATTGAAC
* * *
120656 CTAGGTATAA-T-AATTTAGAG
1 ATAGGTATAATTCAATTGA-AC
120676 ATAGGTATAATT
1 ATAGGTATAATT
120688 ATTTACACCT
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
19 3 0.04
20 11 0.15
21 59 0.81
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (21 bp):
ATAGGTATAATTCAATTGAAC
Found at i:120718 original size:21 final size:21
Alignment explanation
Indices: 120694--120747 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
120684 AATTATTTAC
120694 ACCTATCTTCAATTCAATTGT
1 ACCTATCTTCAATTCAATTGT
*
120715 ACCTATCTTTAATTCAATTGT
1 ACCTATCTTCAATTCAATTGT
120736 ACCTATCTTCAA
1 ACCTATCTTCAA
120748 ATGATTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.43
Consensus pattern (21 bp):
ACCTATCTTCAATTCAATTGT
Found at i:120813 original size:20 final size:20
Alignment explanation
Indices: 120745--120817 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
120735 TACCTATCTT
120745 CAAATGATTTGAAGATAGGTA
1 CAAAT-ATTTGAAGATAGGTA
* *
120766 CAATTAATTGAAGATAGGTA
1 CAAATATTTGAAGATAGGTA
*
120786 CAATTATTTGAAGATAGGTA
1 CAAATATTTGAAGATAGGTA
120806 CAAATATTTGAA
1 CAAATATTTGAA
120818 TATTTGTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
20 44 0.92
21 4 0.08
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.32
Consensus pattern (20 bp):
CAAATATTTGAAGATAGGTA
Found at i:125158 original size:48 final size:48
Alignment explanation
Indices: 124770--125149 Score: 519
Period size: 48 Copynumber: 7.8 Consensus size: 48
124760 ATGTTGAATA
* *
124770 CTGTGGCCTTAGTTTACACTTACCTTACAACAGTATTTACATGGTTCC
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
* * *
124818 CTATGGCCTTAGTTTACACTTACCTTACAACAGTATTTACATGGTTCC
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
*
124866 CTGTGGCCTTAGTTTACACTTACCTTACAACAGTATTTATCGGTACATGGTT-T
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTA--T-T---TACATGGTTCT
* * * *
124919 CCTGTGGCCTTATTTTACACTCACCATACAGCAGTATTTACATGATTCT
1 -CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
*
124968 CTGTGGCCTTAGTTTACACTCACCTTACAGCAGTATTTACATGGTTCT
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
* * * *
125016 TTGTGGCATTAGTTTACACTCACCGTACAACAGTATTTACATGATTCT
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
* *
125064 CTGTGGCATTAGTTTACACTCACCTTACAGCAGTATTTACATGGTTCT
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
* *
125112 CTGTGGCATTAGTTTACACTCACCTTACAGCAGTATTT
1 CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTT
125150 CCTGGGTTCC
Statistics
Matches: 304, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
48 259 0.85
49 1 0.00
50 1 0.00
51 2 0.01
52 1 0.00
54 40 0.13
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (48 bp):
CTGTGGCCTTAGTTTACACTCACCTTACAACAGTATTTACATGGTTCT
Found at i:135121 original size:15 final size:15
Alignment explanation
Indices: 135082--135128 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 15
135072 GGATTTATTT
135082 CTATTTCAAAATAAG
1 CTATTTCAAAATAAG
*
135097 CGGAATTTCAAAATAAG
1 C--TATTTCAAAATAAG
*
135114 CTATTTCAATATAAG
1 CTATTTCAAAATAAG
135129 TGGAGTAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 13 0.48
17 14 0.52
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (15 bp):
CTATTTCAAAATAAG
Found at i:137252 original size:9 final size:9
Alignment explanation
Indices: 137238--137273 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
137228 TAAATATTTC
137238 TCTTTTTTT
1 TCTTTTTTT
137247 TCTTTTTTT
1 TCTTTTTTT
*
137256 T-TCTTTTT
1 TCTTTTTTT
137264 TCTTTTTTT
1 TCTTTTTTT
137273 T
1 T
137274 TTGGGGGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:137255 original size:10 final size:10
Alignment explanation
Indices: 137234--137275 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
137224 ATATTAAATA
137234 TTTCTCTTTTT
1 TTTCT-TTTTT
137245 TTTCTTTTTT
1 TTTCTTTTTT
137255 TTTCTTTTTT
1 TTTCTTTTTT
*
137265 CTT-TTTTTT
1 TTTCTTTTTT
137274 TT
1 TT
137276 GGGGGGGGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 7 0.24
10 17 0.59
11 5 0.17
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:137264 original size:17 final size:17
Alignment explanation
Indices: 137242--137274 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
137232 TATTTCTCTT
137242 TTTTTTCTTTTTTTTTC
1 TTTTTTCTTTTTTTTTC
137259 TTTTTTCTTTTTTTTT
1 TTTTTTCTTTTTTTTT
137275 TGGGGGGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (17 bp):
TTTTTTCTTTTTTTTTC
Found at i:137275 original size:19 final size:19
Alignment explanation
Indices: 137238--137274 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
137228 TAAATATTTC
137238 TCTTTTTTTTCTTTTTTTT
1 TCTTTTTTTTCTTTTTTTT
137257 TC--TTTTTTCTTTTTTTT
1 TCTTTTTTTTCTTTTTTTT
137274 T
1 T
137275 TGGGGGGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
19 2 0.11
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (19 bp):
TCTTTTTTTTCTTTTTTTT
Found at i:143174 original size:4 final size:4
Alignment explanation
Indices: 143165--143211 Score: 76
Period size: 4 Copynumber: 11.8 Consensus size: 4
143155 ATAATAAACG
* *
143165 CTTA CTTA CTTA CTAA CTTA ATTA CTTA CTTA CTTA CTTA CTTA CTT
1 CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTT
143212 GTATCTGGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (4 bp):
CTTA
Found at i:150853 original size:1 final size:1
Alignment explanation
Indices: 150847--150872 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
150837 ATACTTCATT
150847 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
150873 TTCAGCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:151463 original size:172 final size:172
Alignment explanation
Indices: 150950--151572 Score: 1133
Period size: 172 Copynumber: 3.6 Consensus size: 172
150940 GTATCAAGTC
* ** *
150950 TATCGACCAAGGCT-ATTTAGGAACTTGACCAAGGTATTAGTGATATAAACATTTGGTATAAATT
1 TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
*
151014 TTATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
66 TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
151079 GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
131 GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
151121 TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTT-GTATAAATT
1 TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
*
151185 TTATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
66 TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
151250 GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
131 GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
* *
151292 TATCGACCAAAGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGATATAAATT
1 TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
151357 TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
66 TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
*
151422 GAGTCATTATTGTGGTCAAAGTCCTATAACTCCAACAAAAAG
131 GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
*
151464 TATTGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
1 TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
*
151529 TAATGAAAATCCATCAAAATTTGTAGGCATGAGAGCGCTTACAA
66 TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAA
151573 AAAAGTGTGA
Statistics
Matches: 438, Mismatches: 12, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
171 183 0.42
172 255 0.58
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (172 bp):
TATCGACCAATGCTGATTTTCGAACTTGACCAAGGTATTAGTGGTATAAACATTTGGTATAAATT
TAATGAAAATCCGTCAAAATTTGTAGGCATGAGAGCGCTTACAAGGTCAATTTTTGGATAAAACG
GAGTCATTATTGTGGTCAAAGTCCCATAACTCCAACAAAAAG
Found at i:151590 original size:4 final size:4
Alignment explanation
Indices: 151581--151620 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
151571 AAAAAAGTGT
* *
151581 GACG GACG GACG CACG GACG CACG GACG GACG GACG GACG
1 GACG GACG GACG GACG GACG GACG GACG GACG GACG GACG
151621 CCCGGCATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.30, G:0.45, T:0.00
Consensus pattern (4 bp):
GACG
Found at i:157625 original size:17 final size:17
Alignment explanation
Indices: 157603--157635 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
157593 GTTTCCCGAA
157603 AGTGACGGAGTTAGGGT
1 AGTGACGGAGTTAGGGT
157620 AGTGACGGAGTTAGGG
1 AGTGACGGAGTTAGGG
157636 GGCTATGCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.48, T:0.21
Consensus pattern (17 bp):
AGTGACGGAGTTAGGGT
Found at i:157690 original size:10 final size:10
Alignment explanation
Indices: 157675--157714 Score: 71
Period size: 10 Copynumber: 4.0 Consensus size: 10
157665 ACTACTAAAC
157675 AGAGAACTCT
1 AGAGAACTCT
*
157685 AGAGAACTTT
1 AGAGAACTCT
157695 AGAGAACTCT
1 AGAGAACTCT
157705 AGAGAACTCT
1 AGAGAACTCT
157715 GGTGATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (10 bp):
AGAGAACTCT
Found at i:159256 original size:17 final size:17
Alignment explanation
Indices: 159234--159266 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
159224 GTTTCCCGAA
159234 AGTGACGGAGTTAGGGT
1 AGTGACGGAGTTAGGGT
159251 AGTGACGGAGTTAGGG
1 AGTGACGGAGTTAGGG
159267 GGCTATGCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.48, T:0.21
Consensus pattern (17 bp):
AGTGACGGAGTTAGGGT
Found at i:159321 original size:10 final size:10
Alignment explanation
Indices: 159306--159345 Score: 71
Period size: 10 Copynumber: 4.0 Consensus size: 10
159296 ACTACTAAAC
159306 AGAGAACTCT
1 AGAGAACTCT
*
159316 AGAGAACTTT
1 AGAGAACTCT
159326 AGAGAACTCT
1 AGAGAACTCT
159336 AGAGAACTCT
1 AGAGAACTCT
159346 GGTGATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (10 bp):
AGAGAACTCT
Found at i:160975 original size:10 final size:10
Alignment explanation
Indices: 160959--160996 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
160949 AAAATCCCAA
160959 AGTTCTCTAG
1 AGTTCTCTAG
*
160969 GGTTCTCTAG
1 AGTTCTCTAG
*
160979 AGTTCTTTAG
1 AGTTCTCTAG
160989 AGTTCTCT
1 AGTTCTCT
160997 GTTTAGTAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (10 bp):
AGTTCTCTAG
Found at i:161077 original size:6 final size:6
Alignment explanation
Indices: 161068--161103 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
161058 TGTATAAATG
161068 CATGCA CATGCA CATGCA CATGCA CATGCA CATGCA
1 CATGCA CATGCA CATGCA CATGCA CATGCA CATGCA
161104 ATATATTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (6 bp):
CATGCA
Found at i:165321 original size:19 final size:19
Alignment explanation
Indices: 165282--165322 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
165272 GTGGACGGAT
*
165282 TAAAGATCAAACTGCCGAG
1 TAAAGATCAAACTGCCAAG
* *
165301 TAAAGATCAAGCTGTCAAG
1 TAAAGATCAAACTGCCAAG
165320 TAA
1 TAA
165323 TGCTCGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.20
Consensus pattern (19 bp):
TAAAGATCAAACTGCCAAG
Found at i:167241 original size:30 final size:30
Alignment explanation
Indices: 167207--167267 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
167197 AATACGTTGC
*
167207 CGGTCCAATAGATCGCTGTCTATTGACCGG
1 CGGTCCAATAGATCGCAGTCTATTGACCGG
*
167237 CGGTCTAATAGATCGCAGTCTATTGACCGG
1 CGGTCCAATAGATCGCAGTCTATTGACCGG
167267 C
1 C
167268 AGTTCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (30 bp):
CGGTCCAATAGATCGCAGTCTATTGACCGG
Found at i:167269 original size:15 final size:15
Alignment explanation
Indices: 167224--167270 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
167214 ATAGATCGCT
*
167224 GTCTATTGACCGGCG
1 GTCTATTGACCGGCA
* *
167239 GTCTAATAGATC-GCA
1 GTCT-ATTGACCGGCA
167254 GTCTATTGACCGGCA
1 GTCTATTGACCGGCA
167269 GT
1 GT
167271 TCAAAATAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
14 5 0.20
15 15 0.60
16 5 0.20
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (15 bp):
GTCTATTGACCGGCA
Found at i:167623 original size:21 final size:21
Alignment explanation
Indices: 167597--167803 Score: 217
Period size: 21 Copynumber: 9.9 Consensus size: 21
167587 GTTAAATCAA
*
167597 TTCGCGAATAAACGTGAAAGT
1 TTCGCGAATAAACGCGAAAGT
* *
167618 TTCGCGAATAAACGCGTAACT
1 TTCGCGAATAAACGCGAAAGT
*
167639 ATCGCGAATAAACGCGAAAGT
1 TTCGCGAATAAACGCGAAAGT
167660 TTCGCG-ATATAACGCGAAAGT
1 TTCGCGAATA-AACGCGAAAGT
167681 TTCGCG-ATATAACGCGAAAGT
1 TTCGCGAATA-AACGCGAAAGT
**
167702 TTCGCG-ATATAACGCGTTA-T
1 TTCGCGAATA-AACGCGAAAGT
*
167722 TTCGCGAATAAACGCGAAATT
1 TTCGCGAATAAACGCGAAAGT
* * *
167743 TTTGCGAATAAACGCGTAACT
1 TTCGCGAATAAACGCGAAAGT
* ** *
167764 ATCGCG-ATATAACGCGTTACT
1 TTCGCGAATA-AACGCGAAAGT
167785 TTCGCGAATAAACGCGAAA
1 TTCGCGAATAAACGCGAAA
167804 CTTAAGTATA
Statistics
Matches: 161, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
20 20 0.12
21 138 0.86
22 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (21 bp):
TTCGCGAATAAACGCGAAAGT
Found at i:169082 original size:31 final size:30
Alignment explanation
Indices: 169042--169106 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
169032 AAAAGATGAA
* *
169042 AAAATCGAATTATTCCT-GGTACGACTTAAC
1 AAAATCGAATGATT-CTAAGTACGACTTAAC
*
169072 AAAATACGAATGATTTTAAGTACGACTTAAC
1 AAAAT-CGAATGATTCTAAGTACGACTTAAC
169103 AAAA
1 AAAA
169107 ACATTTCCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (30 bp):
AAAATCGAATGATTCTAAGTACGACTTAAC
Found at i:172104 original size:11 final size:11
Alignment explanation
Indices: 172088--172114 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
172078 TTATGAGCCA
172088 GTTGATGCATC
1 GTTGATGCATC
172099 GTTGATGCATC
1 GTTGATGCATC
172110 GTTGA
1 GTTGA
172115 CTTGTGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.15, G:0.30, T:0.37
Consensus pattern (11 bp):
GTTGATGCATC
Found at i:172187 original size:4 final size:4
Alignment explanation
Indices: 172178--172208 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
172168 TCTCATTGTG
*
172178 ATTT ATTT ATTC ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
172209 ATTACTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:176155 original size:16 final size:15
Alignment explanation
Indices: 176134--176163 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
176124 GACCATGTAT
176134 AAACCATGTCAACTAC
1 AAACCATGT-AACTAC
176150 AAACCATGTAACTA
1 AAACCATGTAACTA
176164 ATACACTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.27, G:0.07, T:0.20
Consensus pattern (15 bp):
AAACCATGTAACTAC
Found at i:178222 original size:17 final size:17
Alignment explanation
Indices: 178196--178231 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
178186 AAAATCTATT
*
178196 AATATGAAACAAAACAA
1 AATATAAAACAAAACAA
*
178213 AATATAAAACAAAGCAA
1 AATATAAAACAAAACAA
178230 AA
1 AA
178232 AATGTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.11, G:0.06, T:0.11
Consensus pattern (17 bp):
AATATAAAACAAAACAA
Found at i:187531 original size:11 final size:11
Alignment explanation
Indices: 187511--187539 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
187501 TGTTTGATGC
187511 TGTT-TTTGTT
1 TGTTGTTTGTT
187521 TGTTGTTTGTT
1 TGTTGTTTGTT
187532 TGTTGTTT
1 TGTTGTTT
187540 CCTCAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (11 bp):
TGTTGTTTGTT
Found at i:201011 original size:2 final size:2
Alignment explanation
Indices: 201004--201087 Score: 161
Period size: 2 Copynumber: 42.5 Consensus size: 2
200994 CATGCATAAA
201004 TC TC TC TC TC TC TC TC TC TC TC TC -C TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
201045 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
201087 T
1 T
201088 GTTTTCTGTC
Statistics
Matches: 81, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 80 0.99
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:206081 original size:2 final size:2
Alignment explanation
Indices: 206009--206066 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
205999 AAATTGGAAC
206009 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
206051 CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT
206067 GAGAGTCTCT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:224007 original size:50 final size:50
Alignment explanation
Indices: 223925--224057 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 50
223915 TGGTGTGTGG
* ** * *
223925 CAACGCACTTTGAAAAAAATTTTCAAACTGCGTTGAATTTTGGACAAAAT
1 CAACACACTTTGAAAATTATTTTCAAAGTGCGTTAAATTTTGGACAAAAT
* *
223975 CAACACACTTTGAAAATTATTTTCAAAGTGCGTTAAATTTTGGACCAAGT
1 CAACACACTTTGAAAATTATTTTCAAAGTGCGTTAAATTTTGGACAAAAT
* * * * *
224025 TAACCCACTTTGAAATTTTTTTTCAACGTGCGT
1 CAACACACTTTGAAAATTATTTTCAAAGTGCGT
224058 CATAAAAGTA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (50 bp):
CAACACACTTTGAAAATTATTTTCAAAGTGCGTTAAATTTTGGACAAAAT
Found at i:224238 original size:1 final size:1
Alignment explanation
Indices: 224232--224263 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
224222 TGGGAGTGGT
224232 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
224264 TAACAAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:226445 original size:2 final size:2
Alignment explanation
Indices: 226440--226491 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
226430 TATTTCCCCC
226440 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
226482 CT CT CT CT CT
1 CT CT CT CT CT
226492 TTACAAGGGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:227089 original size:2 final size:2
Alignment explanation
Indices: 227082--227109 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
227072 TAAGATTTCA
227082 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
227110 AGTACATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:227950 original size:24 final size:24
Alignment explanation
Indices: 227918--227981 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
227908 GAAGGCAAAA
227918 TGAAGTGATACTTATCGGGGAAGG
1 TGAAGTGATACTTATCGGGGAAGG
*
227942 TGAAGTGATACTTATCGGGGGAGG
1 TGAAGTGATACTTATCGGGGAAGG
227966 TGAAGTGATACTTATC
1 TGAAGTGATACTTATC
227982 AACCGGACAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.28
Consensus pattern (24 bp):
TGAAGTGATACTTATCGGGGAAGG
Found at i:230559 original size:14 final size:14
Alignment explanation
Indices: 230537--230571 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
230527 AATTTGTAAA
* *
230537 ATTTGTATTTGCTC
1 ATTTTTATTTGCAC
230551 ATTTTTATTTGCAC
1 ATTTTTATTTGCAC
230565 ATTTTTA
1 ATTTTTA
230572 ACACTCTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.60
Consensus pattern (14 bp):
ATTTTTATTTGCAC
Found at i:232240 original size:1 final size:1
Alignment explanation
Indices: 232234--232258 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
232224 AATTTTGTCT
232234 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
232259 CCCTGCCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:234036 original size:64 final size:64
Alignment explanation
Indices: 233935--234339 Score: 513
Period size: 64 Copynumber: 6.3 Consensus size: 64
233925 AGTAAATATT
* * ** * * **
233935 CTGAATTGTGATATTCTGTGTGAAGTCCCACATGCTTTTCCCATTAGTTTCCTACATGTTCATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* * *
233999 CTGAATTGTGATGTTCTGTGTTAAGTTTCACTTGCTTTTCCCATTAATTTCGTACGTGTAAATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* * * *
234063 CTAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCGCATTAGTTTCCTACATGTACATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* ** *
234127 CTGAATTGTGATGTGCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* ** *
234191 CTAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* * * ** * * *
234255 CTAAATTGTGATATTCTGTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATA
1 CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
* *
234319 CAGAATTGTGATATTCTGTGT
1 CTGAATTGTGATGTTCTGTGT
234340 GAATCTTACA
Statistics
Matches: 302, Mismatches: 39, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 302 1.00
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.43
Consensus pattern (64 bp):
CTGAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCCTACATGTAAATA
Found at i:234262 original size:192 final size:192
Alignment explanation
Indices: 233935--234339 Score: 594
Period size: 192 Copynumber: 2.1 Consensus size: 192
233925 AGTAAATATT
* * **
233935 CTGAATTGTGATATTCTGTGTGAAGTCCCACATGCTTTTCCCATTAGTTTCCTACATGTTCATAC
1 CTGAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTAAATAC
* *
234000 TGAATTGTGATGTTCTGTGTTAAGTTTCACTTGCTTTTCCCATTAATTTCGTACGTGTAAATACT
66 TAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCGTACGTGTAAATACT
* ** * * *
234065 AAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCGCATTAGTTTCCTACATGTACATA
131 AAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTACATA
* * ** * ** *
234127 CTGAATTGTGATGTGCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATAC
1 CTGAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTAAATAC
*
234192 TAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACT
66 TAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCGTACGTGTAAATACT
* *
234257 AAATTGTGATATTCTGTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATA
131 AAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTACATA
*
234319 CAGAATTGTGATATTCTGTGT
1 CTGAATTGTGATATTCTGTGT
234340 GAATCTTACA
Statistics
Matches: 187, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
192 187 1.00
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.43
Consensus pattern (192 bp):
CTGAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTAAATAC
TAAATTGTGATGTTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTCGTACGTGTAAATACT
AAATTGTGATATTCTGTGTAAAGTCCCACATGCTTTTCCCATTAATTTCCTACATGTACATA
Found at i:234627 original size:64 final size:64
Alignment explanation
Indices: 234425--234624 Score: 294
Period size: 64 Copynumber: 3.1 Consensus size: 64
234415 TATTTCCAAN
*
234425 TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATG
1 TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATA
234489 TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATA
1 TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATA
* ** * ** * * *
234553 TTCTGTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATAC-AGAATTGTGATA
1 TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTA-AATTGTGATA
234617 TTCTGTGT
1 TTCTGTGT
234625 GAATCTTACA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
63 1 0.01
64 124 0.99
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (64 bp):
TTCTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATA
Found at i:234652 original size:285 final size:284
Alignment explanation
Indices: 234142--234709 Score: 1127
Period size: 285 Copynumber: 2.0 Consensus size: 284
234132 TTGTGATGTG
234142 CTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATGTTC
1 CTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATGTTC
234207 TGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATATTCT
66 TGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATATTCT
234272 GTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATACAGAATTGTGATATTCTG
131 GTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATACAGAATTGTGATATTCTG
234337 TGTGAATCTTACATTCCTGTTCTAAACAAAATTTGTTCATTGAATAGCAATTGTTCTGCAATATG
196 TGTGAATCTTACATTCCTGTTCTAAACAAAATTTGTTCATTGAATAGCAATTGTTCTGCAATATG
234402 CATAATACTAAGTTATTTCCAANTT
261 CATAATACTAAGTTATTTCCAA-TT
234427 CTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATGTTC
1 CTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATGTTC
234492 TGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATATTCT
66 TGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATATTCT
234557 GTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATACAGAATTGTGATATTCTG
131 GTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATACAGAATTGTGATATTCTG
234622 TGTGAATCTTACATTCCTGTTCTAAACAAAATTTGTTCATTGAATAGCAATTGTTCTGCAATATG
196 TGTGAATCTTACATTCCTGTTCTAAACAAAATTTGTTCATTGAATAGCAATTGTTCTGCAATATG
234687 CATAATACTAAGTTATTTCCAAT
261 CATAATACTAAGTTATTTCCAAT
234710 CACTTTTATA
Statistics
Matches: 283, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
284 1 0.00
285 282 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (284 bp):
CTGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATGTTC
TGTGTAAAGTTTCACTTGCTTTTCCCATTAATTTTGTACGTGTAAATACTAAATTGTGATATTCT
GTGTGAAGTCCCACATGCTTTTCCCATTAATTTCCTTCATGTACATACAGAATTGTGATATTCTG
TGTGAATCTTACATTCCTGTTCTAAACAAAATTTGTTCATTGAATAGCAATTGTTCTGCAATATG
CATAATACTAAGTTATTTCCAATT
Found at i:236168 original size:14 final size:14
Alignment explanation
Indices: 236149--236175 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
236139 TTATATGCAT
236149 TTCTTTTTTTTTTC
1 TTCTTTTTTTTTTC
236163 TTCTTTTTTTTTT
1 TTCTTTTTTTTTT
236176 GGTAGGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTCTTTTTTTTTTC
Found at i:238731 original size:21 final size:21
Alignment explanation
Indices: 238716--238774 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
238706 GTTTCGTAAT
*
238716 AACCGTTTAGCGTTTCGTGTG
1 AACCGTTTAGCGTTTCGTGTA
* **
238737 AATCGTGAAGCGTTTCGTGTA
1 AACCGTTTAGCGTTTCGTGTA
238758 AACCGTTTAGCGTTTCG
1 AACCGTTTAGCGTTTCG
238775 GACAAAGCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.36
Consensus pattern (21 bp):
AACCGTTTAGCGTTTCGTGTA
Found at i:239883 original size:19 final size:19
Alignment explanation
Indices: 239861--239897 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
239851 AAGGGCGCTT
* *
239861 AATTCGATACTGGGAAACG
1 AATTCGAAACTAGGAAACG
239880 AATTCGAAACTAGGAAAC
1 AATTCGAAACTAGGAAAC
239898 TGGAGGGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (19 bp):
AATTCGAAACTAGGAAACG
Found at i:252651 original size:18 final size:19
Alignment explanation
Indices: 252628--252664 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
252618 CTAACTTATG
252628 AAAT-AAAATAGAAATAAA
1 AAATAAAAATAGAAATAAA
*
252646 AAATAAAAATAGAAGTAAA
1 AAATAAAAATAGAAATAAA
252665 GGCTTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (19 bp):
AAATAAAAATAGAAATAAA
Found at i:256599 original size:197 final size:196
Alignment explanation
Indices: 256264--256656 Score: 777
Period size: 197 Copynumber: 2.0 Consensus size: 196
256254 AGAATTTTGA
256264 ATGAGCACTCCCCCCTCCACACACACTTTCAAATAACTATACTACAATGACTGCAAAAAAAACCT
1 ATGAGCACTCCCCCCTCCACACACACTTTCAAATAACTATACTACAATGACTGCAAAAAAAACCT
256329 TAAAACAGGGGCGTCTGGACTATTTAAAATATAACCCGTTATATAGCGGGTTATGTATTTTTTTC
66 TAAAACAGGGGCGTCTGGACTATTTAAAATATAACCCGTTATATAGCGGGTTATGTATTTTTTTC
256394 ATGAAATGATCTCTACCTTCATAACCCGCATGAATCAGGCAGGCACGTAGCATCGGGGTGGGGGG
131 ATGAAATGATCTCTACCTTCATAACCCGCATGAATCAGGCAGGCACGTAGCATCGGGGTGGGGGG
256459 G
196 G
256460 NATGAGCACTCCCCCCTCCACACACACTTTCAAATAACTATACTACAATGACTGCAAAAAAAACC
1 -ATGAGCACTCCCCCCTCCACACACACTTTCAAATAACTATACTACAATGACTGCAAAAAAAACC
256525 TTAAAACAGGGGCGTCTGGACTATTTAAAATATAACCCGTTATATAGCGGGTTATGTATTTTTTT
65 TTAAAACAGGGGCGTCTGGACTATTTAAAATATAACCCGTTATATAGCGGGTTATGTATTTTTTT
256590 CATGAAATGATCTCTACCTTCATAACCCGCATGAATCAGGCAGGCACGTAGCATCGGGGTGGGGG
130 CATGAAATGATCTCTACCTTCATAACCCGCATGAATCAGGCAGGCACGTAGCATCGGGGTGGGGG
256655 GG
195 GG
256657 GGGGGGGCGA
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
197 196 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (196 bp):
ATGAGCACTCCCCCCTCCACACACACTTTCAAATAACTATACTACAATGACTGCAAAAAAAACCT
TAAAACAGGGGCGTCTGGACTATTTAAAATATAACCCGTTATATAGCGGGTTATGTATTTTTTTC
ATGAAATGATCTCTACCTTCATAACCCGCATGAATCAGGCAGGCACGTAGCATCGGGGTGGGGGG
G
Found at i:267563 original size:18 final size:18
Alignment explanation
Indices: 267540--267576 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
267530 ACATGAAGAC
*
267540 TGTACATACAACATCCAA
1 TGTACATAAAACATCCAA
*
267558 TGTACATAAAACATTCAA
1 TGTACATAAAACATCCAA
267576 T
1 T
267577 AAACATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (18 bp):
TGTACATAAAACATCCAA
Found at i:275716 original size:15 final size:15
Alignment explanation
Indices: 275698--275730 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
275688 AGTCTTCCAG
275698 TGTGTAGCAGACTAC
1 TGTGTAGCAGACTAC
*
275713 TGTGTAGCAGACTCC
1 TGTGTAGCAGACTAC
275728 TGT
1 TGT
275731 TTAAGATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (15 bp):
TGTGTAGCAGACTAC
Found at i:275804 original size:57 final size:58
Alignment explanation
Indices: 275713--275843 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 58
275703 AGCAGACTAC
* * * *
275713 TGTGTAGCAGACTCCTGTTTAAGATGAACCCTTTCATTTGCACTGTGAAGACTTGCAG
1 TGTGTAGCAGACTCCTATTTAAGATGAACCCTTTCATTTGCACTATGAACACTTCCAG
* * *
275771 TGTGTAGCAGACTTC-ATTTAAGATG-GCCTCTTTCATTTGCACTATGAACTCTTCCAG
1 TGTGTAGCAGACTCCTATTTAAGATGAACC-CTTTCATTTGCACTATGAACACTTCCAG
*
275828 TGTGTAACAGACTCCT
1 TGTGTAGCAGACTCCT
275844 GCATCAGTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
56 2 0.03
57 46 0.74
58 14 0.23
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (58 bp):
TGTGTAGCAGACTCCTATTTAAGATGAACCCTTTCATTTGCACTATGAACACTTCCAG
Found at i:276957 original size:4 final size:4
Alignment explanation
Indices: 276943--277008 Score: 89
Period size: 4 Copynumber: 16.8 Consensus size: 4
276933 GATCACATTT
* *
276943 TGTC TGTC -GTC CGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC CGTC
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC
* *
276990 CGTC TGTC CGTC TGTC TGT
1 TGTC TGTC TGTC TGTC TGT
277009 AAACTTTTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
3 3 0.05
4 53 0.95
ACGTcount: A:0.00, C:0.30, G:0.26, T:0.44
Consensus pattern (4 bp):
TGTC
Found at i:277453 original size:166 final size:166
Alignment explanation
Indices: 277178--278694 Score: 2153
Period size: 166 Copynumber: 9.1 Consensus size: 166
277168 AGAAATTTTC
* * *
277178 AAAAATCTTCTTCTCATGAACCATACGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCATCTGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* *
277243 TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
66 TAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
*
277308 CGAAGTTTTACATAGGAATATACAGAGTAAATCTTT
131 CGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
* *
277344 GAAAATCTTCTTCACATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * * *
277409 TAGTGTAAATTCTAATTTGTGAAAATCATGTCCCCCGAGGGTAGGGTGGGGCCACAATTGGGGGT
66 TAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
* * *
277474 CGAAATTTAACATAGGAATATATAGGGTAAATCTTT
131 CGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
277510 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * *
277575 TAGTGTAAATTCTAATTTGTGAAAATCATGACCCTCGAGGGTAGGGTGGGGCCACAATGGGGGGG
66 TAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAAT-GGGGGG
*
277640 TCAAAGTTTTACATAGGAATATATAGAGTAAATCTTT
130 TCGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
*
277677 AAAAATCTTCTTCTCATGAACCATAAGACTAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * * *
277742 TAGTGTAAATTCTAATTTGTGAAAATCATGACCCACAGGGGTAGGGTGGGGCCACAATTGGGGGT
66 TAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
* *
277807 CGAAATTTAACATAGGAATATATAGAGTAAATCTTT
131 CGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
277843 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* *
277908 TAGTGTAAATTC-ACAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTTGGGCCACAATGGGGTG
66 TAGTGTAAATTCTA-AGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGG
* *
277972 TCGAAGTTTAACATAGGAATATATAAAGTAAATCTTT
130 TCGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
* *
278009 AAAAATCTTCCTT-TCA-GAAAC-TAATCAGCCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTC
1 AAAAATCTT-CTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTC
* * * *
278071 AGGTAGTGTAAATTC-ATAGTTGTGAAATTCATGATCCCCAGGGGTAGGGTGGGGCCACAATGAG
63 AGGTAGTGTAAATTCTA-AGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGG
*
278135 GTGTCGAAGTTTTATTACATAGGAATATATAGAGTAAATCTTT
127 GGGTCGAAG--TT-TTACATAGGAATATATAGAGTAAATCTTT
* * * *
278178 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCCTCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* * * *
278241 GGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGAGGT
64 GGTAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGG
278306 GTCGAAGTTTTATTACATAGGAATATATAGAGTAAATCTTT
129 GTCGAAG--TT-TTACATAGGAATATATAGAGTAAATCTTT
* * * * *
278347 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCATCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* **
278410 GGTAGTGTAGATTC-ATAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGAA
64 GGTAGTGTAAATTCTA-AGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGG
*
278474 GGTCAAAGTTTTACATAGGAATATATATG-GTAAATCTTT
128 GGTCGAAGTTTTACATAGGAATATATA-GAGTAAATCTTT
* * * * *
278513 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCTAGGAAAGCTTAAACTTGTGTGGAAGCGTCCTCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* * *
278576 GGTAGTGTAAATTCAAAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGGGCCACAATGGGGG
64 GGTAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGG
* * * *
278641 TTCAAAGTTTAACAAAGGAATATATATG-GTAAATCTTT
129 GTCGAAGTTTTACATAGGAATATATA-GAGTAAATCTTT
278679 AAAAATCTTCTTCTCA
1 AAAAATCTTCTTCTCA
278695 GAAACTAATC
Statistics
Matches: 1263, Mismatches: 75, Indels: 26
0.93 0.05 0.02
Matches are distributed among these distances:
164 3 0.00
165 6 0.00
166 772 0.61
167 164 0.13
168 6 0.00
169 311 0.25
170 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (166 bp):
AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
TAGTGTAAATTCTAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
CGAAGTTTTACATAGGAATATATAGAGTAAATCTTT
Found at i:277786 original size:333 final size:330
Alignment explanation
Indices: 277178--278710 Score: 2194
Period size: 333 Copynumber: 4.6 Consensus size: 330
277168 AGAAATTTTC
* * *
277178 AAAAATCTTCTTCTCATGAACCATACGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCATCTGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * *
277243 TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
66 TAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
* * * * *
277308 CGAAGTTTTACATAGGAATATACAGAGTAAATCTTTGAAAATCTTCTTCACATG-AAC-CATAAG
131 CGAAGTTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCA-GAAACTAATCAG
*
277371 ACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTC-TAATTTGTGAAAAT
195 -CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCAT-AGTTGTGAAAAT
* * *
277435 CATGTCCCCCGAGGGTAGGGTGGGGCCACAATTGGGGGTCGAAATTTAACATAGGAATATATAGG
258 CATGACCCCAG-GGGTAGGGTGGGGCCACAA-TGGGGGTCGAAATTTAACATAGGAATATATAGA
277500 GTAAATCTTT
321 GTAAATCTTT
277510 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * * *
277575 TAGTGTAAATTCTAATTTGTGAAAATCATGACCCTCGAGGGTAGGGTGGGGCCACAATGGGGGGG
66 TAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAAT-GGGGGG
* * *
277640 TCAAAGTTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATG-AAC-CATAA
130 TCGAAGTTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCA-GAAACTAATCA
* *
277703 GACTAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTC-TAATTTGTGAAAA
194 G-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCAT-AGTTGTGAAAA
277767 TCATGACCCACAGGGGTAGGGTGGGGCCACAATTGGGGGTCGAAATTTAACATAGGAATATATAG
257 TCATGACCC-CAGGGGTAGGGTGGGGCCACAA-TGGGGGTCGAAATTTAACATAGGAATATATAG
277832 AGTAAATCTTT
320 AGTAAATCTTT
277843 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * *
277908 TAGTGTAAATTCACAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTTGGGCCACAATGGGGTGT
66 TAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
* *
277973 CGAAGTTTAACATAGGAATATATAAAGTAAATCTTTAAAAATCTTCCTT-TCAGAAACTAATCAG
131 CGAAGTTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTT-CTTCTCAGAAACTAATCAG
*
278037 CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCATAGTTGTGAAATTCA
195 CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCATAGTTGTGAAAATCA
* *
278102 TGATCCCCAGGGGTAGGGTGGGGCCACAATGAGGTGTCGAAGTTTTATTACATAGGAATATATAG
260 TGA-CCCCAGGGGTAGGGTGGGGCCACAATG-GGGGTCGAA-ATTTA--ACATAGGAATATATAG
278167 AGTAAATCTTT
320 AGTAAATCTTT
* * * *
278178 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCCTCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* * *
278241 GGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGAGGT
64 GGTAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGG
278306 GTCGAAGTTTTATTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAA
129 GTCGAAG--TT-TTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAA
* * * *
278371 TCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCATCAGGTAGTGTAGATTCATAGTTGTGAAA
191 TCAGCCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCATAGTTGTGAAA
* * *
278436 ATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGAAGGTC-AAAGTTTTACATAGGAATATAT
256 ATCATGA-CCCCAGGGGTAGGGTGGGGCCACAATGG-GGGTCGAAA-TTTAACATAGGAATATAT
278500 ATG-GTAAATCTTT
318 A-GAGTAAATCTTT
* * * * *
278513 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCTAGGAAAGCTTAAACTTGTGTGGAAGCGTCCTCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* *
278576 GGTAGTGTAAATTCAAAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGGGCCACAATGGGGG
64 GGTAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGG
* * * *
278641 TTCAAAGTTTAACAAAGGAATATATATG-GTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
129 GTCGAAGTTTTACATAGGAATATATA-GAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
278705 AGCCAG
193 AGCCAG
278711 ATGATTCTTT
Statistics
Matches: 1114, Mismatches: 66, Indels: 42
0.91 0.05 0.03
Matches are distributed among these distances:
331 3 0.00
332 321 0.29
333 336 0.30
334 7 0.01
335 292 0.26
336 1 0.00
337 11 0.01
338 143 0.13
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (330 bp):
AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
TAGTGTAAATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
CGAAGTTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGC
CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCATAGTTGTGAAAATCAT
GACCCCAGGGGTAGGGTGGGGCCACAATGGGGGTCGAAATTTAACATAGGAATATATAGAGTAAA
TCTTT
Found at i:278118 original size:499 final size:496
Alignment explanation
Indices: 277178--278694 Score: 2257
Period size: 499 Copynumber: 3.0 Consensus size: 496
277168 AGAAATTTTC
* * *
277178 AAAAATCTTCTTCTCATGAACCATACGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCATCTGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
*
277243 TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGT
66 TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGT
* * * * *
277308 CGAAGTTTTACATAGGAATATACAGAGTAAATCTTTGAAAATCTTCTTCACATGAACCATAAGAC
131 CGAAATTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATGAACCATAAGAC
*
277373 CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCTAATTTGTGAAAATCAT
196 CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTC-AAGTTGTGAAAATCAT
* * * *
277438 GTCCCCCGAGGGTAGGGTGGGGCCACAATTGGGGGTCGAAATTTAACATAGGAATATATAGGGTA
260 GACCCCCGGGGGTAGGGTGGGGCCACAA-TGGGGGTCGAAGTTTAACATAGGAATATATAAGGTA
* *
277503 AATCTTTAAAAATCTTCTTCTCATG-AAC-CATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGC
324 AATCTTTAAAAATCTTCTTCTCA-GAAACTAATCAG-CCAGGAAAGCTGAAACTTGTGTGGAAGC
*
277566 ATCCTCAGGTAGTGTAAATTC-TAATTTGTGAAAATCATGA-CCCTC-GAGGGTAGGGTGGGGCC
387 ATCCTCAGGTAGTGTAAATTCAT-AGTTGTGAAAATCATGATCCC-CAG-GGGTAGGGTGGGGCC
277628 ACAATGGGGGGGTCAAAGTTTTACATAGGAATATATAGAGTAAATCTTT
449 ACAAT-GGGGGGTCAAAGTTTTACATAGGAATATATAGAGTAAATCTTT
*
277677 AAAAATCTTCTTCTCATGAACCATAAGACTAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
* * *
277742 TAGTGTAAATTCTAATTTGTGAAAATCATGACCCACAGGGGTAGGGTGGGGCCACAATTGGGGGT
66 TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGT
277807 CGAAATTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATGAACCATAAGAC
131 CGAAATTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATGAACCATAAGAC
277872 CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCACAGTTGTGAAAATCAT
196 CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCA-AGTTGTGAAAATCAT
* *
277937 GACCCCCGGGGGTAGGGTTGGGCCACAATGGGGTGTCGAAGTTTAACATAGGAATATATAAAGTA
260 GACCCCCGGGGGTAGGGTGGGGCCACAATGGGG-GTCGAAGTTTAACATAGGAATATATAAGGTA
278002 AATCTTTAAAAATCTTCCTT-TCAGAAACTAATCAGCCAGGAAAGCTGAAACTTGTGTGGAAGCA
324 AATCTTTAAAAATCTT-CTTCTCAGAAACTAATCAGCCAGGAAAGCTGAAACTTGTGTGGAAGCA
*
278066 TCCTCAGGTAGTGTAAATTCATAGTTGTGAAATTCATGATCCCCAGGGGTAGGGTGGGGCCACAA
388 TCCTCAGGTAGTGTAAATTCATAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGGGCCACAA
* * *
278131 TGAGGTGTCGAAGTTTTATTACATAGGAATATATAGAGTAAATCTTT
453 TGGGGGGTCAAAG--TT-TTACATAGGAATATATAGAGTAAATCTTT
* * * *
278178 AAAAATCTTCTTCTCA-GAAAC-TAATCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCCTCA
1 AAAAATCTTCTTCTCATGAACCATAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCA
* *
278241 GGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAA-TGAGG
64 GGTAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATTG-GG
* * *
278305 TGTCGAAGTTTTATTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCA-GAAAC-
128 GGTCGAA-ATTTA--ACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATGAACCA
* * * * *
278368 TAATCAGCCAGTAAAGCTGACACTTGTGTGGAAGCATCATCAGGTAGTGTAGATTCATAGTTGTG
190 TAA-GA-CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCA-AGTTGTG
* * *
278433 AAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGAAGGTCAAAGTTTTACATAGGAATAT
252 AAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGG-GGGTCGAAGTTTAACATAGGAATAT
* * *
278498 ATATGGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCTAGGAAAGCTTAAACTTGTGT
316 ATAAGGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAAGCTGAAACTTGTGT
* *
278563 GGAAGCGTCCTCAGGTAGTGTAAATTCAAAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGG
381 GGAAGCATCCTCAGGTAGTGTAAATTCATAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGG
* * *
278628 GCCACAATGGGGGTTCAAAGTTTAACAAAGGAATATATATG-GTAAATCTTT
446 GCCACAATGGGGGGTCAAAGTTTTACATAGGAATATATA-GAGTAAATCTTT
278679 AAAAATCTTCTTCTCA
1 AAAAATCTTCTTCTCA
278695 GAAACTAATC
Statistics
Matches: 933, Mismatches: 63, Indels: 42
0.90 0.06 0.04
Matches are distributed among these distances:
498 16 0.02
499 407 0.44
500 21 0.02
501 180 0.19
502 10 0.01
503 8 0.01
504 290 0.31
505 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (496 bp):
AAAAATCTTCTTCTCATGAACCATAAGACCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGG
TAGTGTAGATTCTAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGT
CGAAATTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCATGAACCATAAGAC
CAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTCAAGTTGTGAAAATCATG
ACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGTCGAAGTTTAACATAGGAATATATAAGGTAAA
TCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAAGCTGAAACTTGTGTGGAAGCATCC
TCAGGTAGTGTAAATTCATAGTTGTGAAAATCATGATCCCCAGGGGTAGGGTGGGGCCACAATGG
GGGGTCAAAGTTTTACATAGGAATATATAGAGTAAATCTTT
Found at i:280825 original size:2 final size:2
Alignment explanation
Indices: 280818--280871 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
280808 ATAATGTGTA
280818 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
280860 CT CT CT CT CT CT
1 CT CT CT CT CT CT
280872 TACCTGTACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:290616 original size:166 final size:165
Alignment explanation
Indices: 290281--290899 Score: 559
Period size: 166 Copynumber: 3.8 Consensus size: 165
290271 TGTTACTTGT
* * * ** * *
290281 GTGGAGGCATCCTCAGGTAGGGTAGATTCAAGTTTGTTCAAATCATGATCCCGGAGGGTT-GGAT
1 GTGGAAGCATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATCATGGCCCCTGAGGGTTAGGAC
** * * *
290345 GGGGCCACAATGGGGGGATCAGGTTTTACATACTAGGCATTTATAGAGAAAATCTTTAAAAAATC
66 GGGGCCACAAT-GGGGGATCAATTTTTAC--A-TAGGAATATATAGAGCAAATCTTT-AAAAATC
**
290410 TTCTTCTCAAAAACTAATAGGCCAGGAAAGCTCAAATTTGA
126 -TCTTCTCAAAAACTTTTAGGCCAGGAAAGCTCAAATTTGA
** * *
290451 ACGGAAGCATTCTCAGATAGTGTAGATTCAAGTTTGTTCAAGA-CATGGCCCCTG-GGGTTAGGG
1 GTGGAAGCATCCTCAGATAGTGTAGATTCAAGTTTGTTCAA-ATCATGGCCCCTGAGGGTTAGGA
*
290514 CGGGGCCACAATGGGGGAACATATTTTTACATAGGAATATATAGAGCAAATCTTTAAAAATCTCC
65 CGGGGCCACAATGGGGGATCA-ATTTTTACATAGGAATATATAGAGCAAATCTTTAAAAATCT-C
290579 TTCTCAAAAACTTTTAGGCCAGGAAAGCTCAAATTTGA
128 TTCTCAAAAACTTTTAGGCCAGGAAAGCTCAAATTTGA
* * *
290617 GTGGAAGCATCCTCAGATAATATAGATAT-AAGTTTGTTTAAATCATGGTCCCC-GAGGG-TAGG
1 GTGGAAGCATCCTCAGATAGTGTAGAT-TCAAGTTTGTTCAAATCATGG-CCCCTGAGGGTTAGG
** * * * * * *
290679 GTGAGGCTACAGTGGGGG-TGAGTTATTACATAGGAATATATAGAGCAAAAT-TTTAAAAATCAT
64 ACGGGGCCACAATGGGGGATCAATTTTTACATAGGAATATATAGAGC-AAATCTTTAAAAATC-T
* * * * *
290742 -TT-T-TAAAACTATTT-GGCCA-GAAAACTTAAACTTGT
127 CTTCTCAAAAACT-TTTAGGCCAGGAAAGCTCAAATTTGA
* * * * * * *
290777 GTGGAGGCATCCTCAGGTAGTGTAAATTCAAGTTTGCT-AAATCATAGTCCCTG-GGGGTAGGAC
1 GTGGAAGCATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATCATGGCCCCTGAGGGTTAGGAC
** * * *
290840 GGGGCTGCAATGGCGGGATGAATTTTTACGTAGGAATATATAGAG-AATATCTTAAAAAAT
66 GGGGCCACAATGG-GGGATCAATTTTTACATAGGAATATATAGAGCAA-ATCTTTAAAAAT
290900 ATTCTGGGAA
Statistics
Matches: 376, Mismatches: 55, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
158 6 0.02
159 26 0.07
160 47 0.12
161 43 0.11
162 4 0.01
163 2 0.01
164 33 0.09
165 8 0.02
166 101 0.27
167 29 0.08
168 1 0.00
169 13 0.03
170 62 0.16
171 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (165 bp):
GTGGAAGCATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATCATGGCCCCTGAGGGTTAGGAC
GGGGCCACAATGGGGGATCAATTTTTACATAGGAATATATAGAGCAAATCTTTAAAAATCTCTTC
TCAAAAACTTTTAGGCCAGGAAAGCTCAAATTTGA
Found at i:292454 original size:15 final size:16
Alignment explanation
Indices: 292436--292474 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
292426 TCCACTTAAA
292436 TTGAAAT-CGCTTATT
1 TTGAAATCCGCTTATT
292451 TTGAAATTCCGCTTATT
1 TTGAAA-TCCGCTTATT
292468 TTGAAAT
1 TTGAAAT
292475 GAAATAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.27
16 2 0.09
17 14 0.64
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (16 bp):
TTGAAATCCGCTTATT
Found at i:298721 original size:48 final size:48
Alignment explanation
Indices: 298651--298790 Score: 255
Period size: 48 Copynumber: 2.9 Consensus size: 48
298641 TTAGCATATT
298651 TTAAGAAT-TTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTAAAA
1 TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTAAAA
**
298698 TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTAATT
1 TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTAAAA
298746 TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTA
1 TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTA
298791 CGATTATGGT
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 8 0.09
48 82 0.91
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.53
Consensus pattern (48 bp):
TTAAGAATGTTTTTTACTTTCAGTTTGTGTTCATTGTTGGAGTTAAAA
Found at i:303359 original size:18 final size:18
Alignment explanation
Indices: 303336--303394 Score: 118
Period size: 18 Copynumber: 3.3 Consensus size: 18
303326 GCAACAACAG
303336 CAACAAGGAGTGAATCAA
1 CAACAAGGAGTGAATCAA
303354 CAACAAGGAGTGAATCAA
1 CAACAAGGAGTGAATCAA
303372 CAACAAGGAGTGAATCAA
1 CAACAAGGAGTGAATCAA
303390 CAACA
1 CAACA
303395 GTTTCAGCAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.51, C:0.19, G:0.20, T:0.10
Consensus pattern (18 bp):
CAACAAGGAGTGAATCAA
Found at i:307427 original size:1 final size:1
Alignment explanation
Indices: 307421--307445 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
307411 ACGTGCCCCT
307421 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
307446 TCTAACCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:310903 original size:43 final size:43
Alignment explanation
Indices: 310714--310903 Score: 186
Period size: 42 Copynumber: 4.5 Consensus size: 43
310704 AATATATCTT
* * *
310714 ATCTCGTAATTACGAGAAATGATCTCGTTATAACAAGTTTATT
1 ATCTCGTAATTACGAGAAAAGATCTCGTTATAACGAGTTTATA
* * * * * * *
310757 ATCTGGTTATTGCGAG-AAAGATCTCATTATTACGAGTTAATT
1 ATCTCGTAATTACGAGAAAAGATCTCGTTATAACGAGTTTATA
* * * ***
310799 TTCTCGTAATTACGAGTAAAGATCTCGTTATTACGAGAACA-A
1 ATCTCGTAATTACGAGAAAAGATCTCGTTATAACGAGTTTATA
* * * *
310841 ATCACGTAATTCCGAGAAAAGATCTCGCTACAACGAGTTTATA
1 ATCTCGTAATTACGAGAAAAGATCTCGTTATAACGAGTTTATA
310884 ATCTCGTAATTACGAGAAAA
1 ATCTCGTAATTACGAGAAAA
310904 AACTAATTAA
Statistics
Matches: 116, Mismatches: 29, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 64 0.55
43 52 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (43 bp):
ATCTCGTAATTACGAGAAAAGATCTCGTTATAACGAGTTTATA
Found at i:311052 original size:43 final size:43
Alignment explanation
Indices: 310949--311086 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 43
310939 TAATTACATG
* * *
310949 TACGAGATAATCAACTCGTAAG-AACGAGATATTTTCTCGTAAT
1 TACGAGATAAACAACTCGT-TGTAACGAGATCTTTTCTCGTAAT
* ** * *
310992 TACGATA-AAATTTACTCGTTGTTACGTGATCTTTTCTCGTAAT
1 TACGAGATAAA-CAACTCGTTGTAACGAGATCTTTTCTCGTAAT
* * * *
311035 TACGAGATAAACAACTCGTTATAACGAAATCTTATCTCGTTAT
1 TACGAGATAAACAACTCGTTGTAACGAGATCTTTTCTCGTAAT
311078 TACGAGATA
1 TACGAGATA
311087 TTTTCTTTTA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 3 0.04
43 69 0.92
44 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (43 bp):
TACGAGATAAACAACTCGTTGTAACGAGATCTTTTCTCGTAAT
Found at i:311117 original size:86 final size:87
Alignment explanation
Indices: 311027--311207 Score: 195
Period size: 86 Copynumber: 2.1 Consensus size: 87
311017 GTGATCTTTT
* ** *
311027 CTCGTAATTACGAGATAAACAACTCGTTATAACGA-AATCTTATCTCGTTATTACGAGATATT-T
1 CTCGTAATTACGAGATAAACAACTCCTTATAACGAGAA-AATATCTCGTTACTACGAGATATTGT
* * *
311090 TCTTTTAATAACGAGATATTTAG
65 TCTTGTAATAACGAGATAATTAA
* * **** * *
311113 CTCGTTATTTCGAGATCTTTAACTCCTTATAACGAGAAAATATTTCGTTACTACGAGATTTTGTT
1 CTCGTAATTACGAGATAAACAACTCCTTATAACGAGAAAATATCTCGTTACTACGAGATATTGTT
*
311178 CTTGTAATCACGAGATAATTAA
66 CTTGTAATAACGAGATAATTAA
311200 CTCGTAAT
1 CTCGTAAT
311208 AATGAGATCT
Statistics
Matches: 76, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
86 47 0.62
87 29 0.38
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (87 bp):
CTCGTAATTACGAGATAAACAACTCCTTATAACGAGAAAATATCTCGTTACTACGAGATATTGTT
CTTGTAATAACGAGATAATTAA
Found at i:311148 original size:22 final size:22
Alignment explanation
Indices: 311097--311149 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
311087 TTTTCTTTTA
* *
311097 ATAACGAGATATTTAGCTCGTT
1 ATAACGAGATATTTAACTCCTT
** *
311119 ATTTCGAGATCTTTAACTCCTT
1 ATAACGAGATATTTAACTCCTT
311141 ATAACGAGA
1 ATAACGAGA
311150 AAATATTTCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (22 bp):
ATAACGAGATATTTAACTCCTT
Found at i:311206 original size:22 final size:21
Alignment explanation
Indices: 311181--311237 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
311171 TTTTGTTCTT
*
311181 GTAATCACGAGATAATTAACTC
1 GTAATAACGAGATAATTAA-TC
* * *
311203 GTAATAATGAGAT-CTTTATC
1 GTAATAACGAGATAATTAATC
*
311223 GTAATTACGAGATAA
1 GTAATAACGAGATAA
311238 AAATATTTAC
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 13 0.48
21 3 0.11
22 11 0.41
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (21 bp):
GTAATAACGAGATAATTAATC
Found at i:322598 original size:17 final size:19
Alignment explanation
Indices: 322564--322599 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
322554 TCAGTGTATT
322564 CCAAAAATAAATCCCCCAA
1 CCAAAAATAAATCCCCCAA
322583 CCAAAAA-AAA-CCCCCAA
1 CCAAAAATAAATCCCCCAA
322600 AGTAAGACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.56, C:0.39, G:0.00, T:0.06
Consensus pattern (19 bp):
CCAAAAATAAATCCCCCAA
Found at i:324173 original size:16 final size:16
Alignment explanation
Indices: 324148--324186 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
324138 CAGGGGAGGT
*
324148 CATA-CCTGGAGAACC
1 CATACCCTGGAAAACC
*
324163 CATACCCTGGAAAACT
1 CATACCCTGGAAAACC
324179 CATACCCT
1 CATACCCT
324187 AATGATATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.33, C:0.36, G:0.13, T:0.18
Consensus pattern (16 bp):
CATACCCTGGAAAACC
Found at i:334541 original size:13 final size:13
Alignment explanation
Indices: 334523--334552 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
334513 ATTAAGCACT
334523 TAATAATTTTATA
1 TAATAATTTTATA
334536 TAATAATTTTATA
1 TAATAATTTTATA
334549 TAAT
1 TAAT
334553 GTTGCTGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TAATAATTTTATA
Found at i:338560 original size:2 final size:2
Alignment explanation
Indices: 338555--338593 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
338545 CACACACACA
338555 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
338594 AAATTTTACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:342276 original size:2 final size:2
Alignment explanation
Indices: 342269--342299 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
342259 AAAGTTGATA
342269 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
342300 GTAATGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:346982 original size:17 final size:16
Alignment explanation
Indices: 346940--346984 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
346930 AAGCAATTTT
*
346940 ACTCTTGATCCCTCGA
1 ACTCTTGATCTCTCGA
346956 ACTC-TGATCTCTCGA
1 ACTCTTGATCTCTCGA
*
346971 AGTTCTTGATCTCT
1 A-CTCTTGATCTCT
346985 TGAGGTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 11 0.44
16 6 0.24
17 8 0.32
ACGTcount: A:0.18, C:0.31, G:0.13, T:0.38
Consensus pattern (16 bp):
ACTCTTGATCTCTCGA
Found at i:347711 original size:16 final size:16
Alignment explanation
Indices: 347687--347717 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
347677 CATTTTTTTA
*
347687 AACTTTTGATCTCTCG
1 AACTCTTGATCTCTCG
347703 AACTCTTGATCTCTC
1 AACTCTTGATCTCTC
347718 AAAGTTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (16 bp):
AACTCTTGATCTCTCG
Found at i:350345 original size:2 final size:2
Alignment explanation
Indices: 350338--350440 Score: 188
Period size: 2 Copynumber: 51.5 Consensus size: 2
350328 AGAAAATGAG
* *
350338 CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT GT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
350380 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
350422 CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT C
350441 AAGTATGTGA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 97 1.00
ACGTcount: A:0.00, C:0.49, G:0.02, T:0.50
Consensus pattern (2 bp):
CT
Found at i:366027 original size:15 final size:15
Alignment explanation
Indices: 366007--366044 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
365997 TGCATAATTG
366007 AAAGAAATGGAACTC
1 AAAGAAATGGAACTC
366022 AAAGAAATGGAACTC
1 AAAGAAATGGAACTC
*
366037 AAATAAAT
1 AAAGAAAT
366045 ACGTCAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.58, C:0.11, G:0.16, T:0.16
Consensus pattern (15 bp):
AAAGAAATGGAACTC
Found at i:369578 original size:2 final size:2
Alignment explanation
Indices: 369571--369619 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
369561 GGTTATGCAC
369571 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
369613 AG AG AG A
1 AG AG AG A
369620 TTGTTTAAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:377401 original size:2 final size:2
Alignment explanation
Indices: 377394--377452 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
377384 AAAGACGGAT
377394 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
377436 GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA G
377453 CATACGCACA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Done.