oyster.v9_M.fa.s44.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold619
Parameters: 2 7 7 80 10 50 500
Length:  1099986

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872640--872677	15	2.4	16	91	4	60	13	13	2	71	1.26
875283--875325	20	2.1	20	100	0	86	13	27	13	44	1.83
876091--876391	21	14.4	21	89	5	409	21	9	21	46	1.81
876901--877496	21	28.5	21	87	6	704	47	21	9	21	1.78
878102--878164	33	1.9	33	93	0	108	30	20	9	39	1.84
887870--887913	2	22.0	2	100	0	88	50	0	50	0	1.00
887873--887936	14	4.6	14	88	3	67	46	7	45	0	1.32
892686--892732	2	23.5	2	100	0	94	0	48	0	51	1.00
895553--895595	2	21.5	2	100	0	86	48	0	51	0	1.00
902366--902398	3	11.3	3	87	6	50	0	30	0	69	0.88
906321--906483	3	54.3	3	90	2	193	33	4	34	28	1.77
906869--906949	3	27.0	3	74	9	67	35	27	2	34	1.70
906865--906902	18	2.1	18	95	0	67	39	23	0	36	1.55
906869--906949	21	3.7	21	80	9	90	35	27	2	34	1.70
911613--911642	15	2.0	15	100	0	60	33	26	20	20	1.97
912638--912748	19	5.8	19	90	0	168	32	7	10	49	1.65
913240--913269	15	1.9	16	93	6	53	40	6	6	46	1.56
917086--917132	11	4.1	11	78	15	51	8	8	27	55	1.59
925547--926418	329	2.6	328	85	5	1198	33	15	25	25	1.95
925547--926418	166	5.3	166	87	4	1197	33	15	25	25	1.95
927056--927093	1	38.0	1	100	0	76	0	0	0	100	0.00
928632--928660	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930566--930715	75	2.0	74	97	1	282	29	24	23	22	1.99
931101--931143	16	2.7	16	81	0	50	32	44	9	13	1.76
931209--931243	15	2.3	15	90	0	52	8	25	37	28	1.85
941818--941865	16	3.0	16	100	0	96	43	25	25	6	1.77
942648--942695	16	3.0	16	81	0	60	20	18	27	33	1.96
945317--945395	32	2.4	32	93	2	140	27	29	17	25	1.98
946538--946571	16	2.2	15	89	5	50	82	17	0	0	0.67
946931--946969	20	1.9	20	89	0	60	7	7	23	61	1.49
949686--949716	10	3.1	10	90	0	53	16	38	45	0	1.47
951340--951389	21	2.4	21	93	6	84	80	8	4	8	1.03
953803--953992	95	2.0	94	97	1	362	38	15	11	34	1.83
956974--957101	41	3.1	40	78	6	132	43	12	4	39	1.63
956980--957120	19	6.8	21	70	16	89	44	13	4	37	1.63
957902--957946	1	45.0	1	81	0	54	0	0	8	91	0.43
957899--957944	22	2.1	22	95	0	83	0	0	10	89	0.50
960581--960872	161	1.9	152	88	7	437	36	28	13	20	1.91
963924--963968	2	22.5	2	100	0	90	0	51	0	48	1.00
964739--964795	2	28.5	2	100	0	114	0	50	0	49	1.00
965014--965052	2	19.5	2	100	0	78	0	51	0	48	1.00
965102--965134	2	16.5	2	100	0	66	0	51	0	48	1.00
971743--971769	2	13.5	2	100	0	54	48	0	51	0	1.00
975264--975344	35	2.3	35	82	4	101	32	16	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988506--988535	10	3.0	10	100	0	60	40	20	10	30	1.85
992404--992431	2	14.0	2	100	0	56	50	0	50	0	1.00
1001354--1001534	34	5.3	34	86	1	202	32	12	19	35	1.89
1001354--1001534	68	2.7	68	84	1	229	32	12	19	35	1.89
1004790--1004821	16	2.0	16	100	0	64	37	12	12	37	1.81
1039729--1039791	3	20.7	3	74	9	56	63	1	3	31	1.19
1039749--1039801	27	2.0	27	85	7	72	58	0	9	32	1.30
1044284--1044325	2	21.0	2	100	0	84	50	0	50	0	1.00
1049130--1049154	12	2.1	12	100	0	50	68	8	0	24	1.16
1057066--1057101	2	18.0	2	100	0	72	0	50	0	50	1.00
1080380--1080744	180	2.0	179	90	1	570	37	18	13	30	1.89
1083784--1083814	2	15.5	2	100	0	62	0	51	0	48	1.00
1084484--1084511	12	2.3	12	100	0	56	67	7	0	25	1.15
1094826--1094881	27	2.1	27	86	0	76	39	3	12	44	1.60
1097357--1097385	15	1.9	15	100	0	58	31	6	6	55	1.53
1099656--1099680	12	2.1	12	100	0	50	32	0	40	28	1.57

Tables:   1   2   3

The End!