oyster.v9_M.fa.s45.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold354
Parameters: 2 7 7 80 10 50 500
Length:  1097647

Tables:   1   2   3   

This is table  3  of  3  ( 311 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
842001--842134	42	3.2	41	82	4	144	37	23	12	26	1.91
842101--842134	10	3.4	10	91	0	50	41	26	8	23	1.83
842101--842135	15	2.3	15	90	0	52	40	28	8	22	1.84
842282--842311	10	3.0	10	90	0	51	40	26	13	20	1.89
842339--842418	21	3.8	21	88	4	117	41	23	8	26	1.83
845689--845819	4	32.8	4	98	0	226	50	0	27	22	1.49
846963--846997	4	8.8	4	87	0	52	22	2	2	71	1.13
847050--847079	2	15.0	2	100	0	60	50	0	50	0	1.00
847230--847270	11	3.5	11	90	6	55	9	12	29	48	1.72
851678--851725	2	24.0	2	91	0	78	0	54	0	45	0.99
851768--851807	20	2.0	20	90	0	62	35	12	0	52	1.39
851771--851805	8	4.4	8	88	0	52	34	11	0	54	1.37
854331--854639	65	4.8	65	82	4	318	36	10	18	34	1.85
854314--854639	130	2.5	130	82	5	360	36	9	19	34	1.84
856742--856777	15	2.4	15	90	0	54	69	2	13	13	1.30
873193--873257	11	5.9	11	83	0	76	29	30	9	30	1.88
874266--874488	112	2.0	112	96	0	410	29	18	19	32	1.95
874694--874764	2	36.0	2	88	2	99	54	0	43	1	1.08
875141--875182	11	3.8	11	81	6	50	33	9	26	30	1.88
875132--875183	22	2.4	22	87	12	81	38	9	23	28	1.86
875402--875452	11	4.6	11	82	7	68	39	7	25	27	1.83
902292--902370	18	4.7	18	70	17	55	56	21	5	16	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902329--902368	14	2.7	15	84	7	55	70	15	0	15	1.18
902416--902557	42	3.4	42	77	1	142	41	20	4	33	1.74
902361--902563	21	9.8	21	71	5	108	44	20	5	29	1.74
909234--909295	21	3.0	21	79	13	74	32	8	17	41	1.79
909494--909530	10	3.7	10	88	0	56	21	8	27	43	1.80
910272--910298	14	1.9	14	100	0	54	48	14	14	22	1.81
919142--919231	45	2.0	45	93	4	155	22	16	11	50	1.77
922080--922171	21	4.4	21	92	0	157	22	8	19	48	1.76
932950--933115	21	7.8	21	73	7	138	43	23	7	25	1.79
936300--936330	11	2.8	11	90	0	53	45	29	16	9	1.79
936500--936601	11	9.5	11	74	4	73	45	27	12	14	1.82
936500--936551	21	2.4	22	90	3	79	46	30	15	7	1.74
947964--948117	49	3.0	52	83	7	215	20	20	16	42	1.89
949692--949733	14	3.0	14	100	0	84	21	7	14	57	1.61
955124--955633	165	3.1	165	84	4	623	31	14	23	30	1.94
956466--956498	17	1.9	17	100	0	66	63	12	6	18	1.48
959107--959216	36	3.1	36	97	0	211	29	16	16	38	1.90
961467--961510	18	2.4	18	92	0	70	20	6	22	50	1.72
963461--963535	2	37.5	2	97	0	141	49	0	50	0	1.00
966500--967836	134	10.0	134	82	4	1489	38	13	13	33	1.84
966498--967836	269	5.0	266	81	4	1523	38	13	13	33	1.84
969498--969902	212	1.9	218	90	4	651	40	15	17	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973972--974024	27	1.9	28	92	3	90	45	22	32	0	1.53
974408--974456	24	2.1	23	85	11	64	83	10	6	0	0.80
974403--974451	16	3.0	16	79	11	55	81	14	4	0	0.83
978385--978414	4	7.8	4	92	7	53	0	46	26	26	1.53
978679--978716	19	2.0	19	100	0	76	42	10	15	31	1.81
988459--988536	38	2.0	39	90	2	122	33	7	15	43	1.75
988698--988747	21	2.4	21	93	0	82	22	34	14	30	1.93
988691--988744	28	1.9	28	88	0	81	20	33	14	31	1.93
990959--991018	2	30.0	2	100	0	120	50	0	50	0	1.00
1007779--1007803	13	1.9	13	100	0	50	72	0	4	24	1.02
1016459--1016800	172	2.0	172	100	0	684	31	14	13	40	1.85
1020132--1020156	10	2.5	10	100	0	50	32	0	8	60	1.26
1021456--1021545	18	5.5	15	79	12	72	5	0	14	80	0.89
1021458--1021545	13	6.8	12	71	19	54	5	0	13	80	0.88
1021517--1021556	18	2.3	17	87	8	62	2	0	17	80	0.83
1021458--1021538	34	2.4	35	80	15	91	6	0	13	80	0.89
1029670--1029735	2	33.0	2	100	0	132	50	0	50	0	1.00
1037510--1037542	12	2.8	12	90	4	50	36	9	0	54	1.32
1038951--1039013	32	2.0	32	100	0	126	28	25	14	31	1.95
1055400--1055540	69	2.0	69	100	0	282	31	21	17	30	1.96
1056760--1056791	2	16.0	2	100	0	64	0	50	0	50	1.00
1062055--1062941	443	2.0	441	96	1	1643	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065966--1066002	16	2.4	16	86	8	51	51	2	16	29	1.58
1076053--1076104	2	26.0	2	100	0	104	0	50	0	50	1.00
1083920--1083979	31	1.9	31	96	0	111	21	13	21	43	1.87
1086051--1086080	15	2.0	15	100	0	60	33	33	13	20	1.91
1096095--1096541	167	2.7	165	76	7	465	31	19	20	28	1.97

Tables:   1   2   3

The End!