oyster.v9_M.fa.s46.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold121
Parameters: 2 7 7 80 10 50 500
Length:  1096690

Tables:   1   2   3   

This is table  3  of  3  ( 313 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810480--810576	40	2.5	39	75	11	101	32	13	16	37	1.88
815893--815932	8	4.8	8	82	11	53	50	15	35	0	1.44
825302--825380	24	3.3	24	92	3	124	12	46	10	30	1.75
826310--826559	101	2.5	101	87	0	383	32	18	12	35	1.89
833799--833845	4	11.8	4	88	6	69	0	2	21	76	0.89
833807--833836	15	2.0	15	100	0	60	0	0	20	80	0.72
833804--833843	19	2.1	19	100	0	80	0	0	20	80	0.72
847530--847571	23	1.9	21	85	9	57	47	7	7	38	1.58
852473--852534	31	2.0	31	93	0	106	27	3	29	40	1.72
855986--856031	15	2.9	16	80	9	58	47	6	8	36	1.60
873702--873737	15	2.4	15	95	0	63	8	52	11	27	1.65
880294--880347	13	3.9	13	76	11	54	18	3	35	42	1.68
886475--886506	16	2.0	16	93	0	55	28	21	18	31	1.97
886947--886990	24	1.9	23	90	9	72	38	11	9	40	1.73
886977--887089	15	7.5	15	67	18	65	42	12	6	38	1.68
887014--887094	35	2.3	35	81	8	101	41	13	4	39	1.66
887051--887309	15	17.3	15	65	19	80	45	11	3	39	1.58
887405--887453	20	2.5	20	82	0	53	44	12	8	34	1.71
887792--887828	19	1.9	19	88	0	56	37	29	5	27	1.79
888245--888281	19	1.9	19	88	0	56	37	29	5	27	1.79
888101--888854	177	4.3	177	87	2	1070	33	25	17	23	1.96
888598--888634	19	1.9	19	88	0	56	40	32	5	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888082--888854	353	2.2	354	91	2	1257	33	25	17	23	1.96
888779--888818	19	2.1	19	85	0	53	35	40	2	22	1.68
888966--888991	6	4.3	6	100	0	52	19	46	34	0	1.50
893831--893872	2	21.0	2	100	0	84	50	0	0	50	1.00
894430--894703	58	4.9	55	83	7	295	36	10	12	40	1.76
894450--894668	113	1.9	114	85	5	300	36	9	10	42	1.73
897136--897162	14	1.9	14	100	0	54	44	22	3	29	1.70
911974--912050	38	2.0	38	89	0	118	33	12	7	45	1.72
915095--915436	161	2.1	159	91	2	551	35	20	14	28	1.93
918322--918361	19	2.1	19	85	0	53	37	35	2	25	1.69
918303--918628	177	1.8	175	83	6	424	32	26	16	24	1.96
926026--926110	40	2.1	40	86	0	116	29	3	17	49	1.63
933615--933645	1	31.0	1	100	0	62	0	0	100	0	0.00
935276--935300	1	25.0	1	100	0	50	0	100	0	0	0.00
936785--937150	166	2.2	164	93	2	610	37	13	20	27	1.91
938130--938161	1	32.0	1	93	0	55	0	96	0	3	0.20
938437--938471	2	17.5	2	100	0	70	0	48	0	51	1.00
946003--946046	20	2.2	20	84	8	54	6	0	13	79	0.92
946011--946049	13	2.8	13	85	11	51	2	0	12	84	0.72
948175--948205	15	2.1	15	93	0	53	45	3	35	16	1.63
956679--956713	17	2.1	17	100	0	70	37	17	17	28	1.92
961609--962333	179	4.0	180	92	2	1233	36	17	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961609--962332	359	2.0	359	95	1	1301	36	17	15	30	1.91
965886--965938	2	26.5	2	100	0	106	0	49	0	50	1.00
965994--966033	2	20.0	2	100	0	80	0	50	0	50	1.00
974392--974447	2	28.0	2	100	0	112	0	50	0	50	1.00
976517--976547	1	31.0	1	100	0	62	0	100	0	0	0.00
982963--983011	2	24.5	2	95	0	89	2	48	0	48	1.12
985430--985490	2	30.5	2	96	0	113	50	0	49	0	1.00
990831--991014	15	12.3	15	89	2	262	14	7	40	38	1.73
990807--991014	45	4.6	44	87	2	254	12	8	40	37	1.74
995162--995203	20	2.1	20	100	0	84	23	26	30	19	1.98
1006088--1006162	37	1.9	39	87	12	111	50	6	8	34	1.58
1012451--1012731	141	2.0	141	100	0	562	33	21	16	28	1.95
1018331--1018692	180	2.0	180	88	3	541	29	14	18	38	1.90
1020972--1021021	11	4.5	11	76	13	50	86	0	4	10	0.71
1020976--1021021	17	2.7	16	90	10	65	84	0	4	10	0.75
1020972--1021021	23	2.2	23	89	3	75	86	0	4	10	0.71
1024673--1024702	1	30.0	1	93	0	51	3	96	0	0	0.21
1033909--1034241	169	2.0	169	96	0	612	36	11	15	36	1.82
1036435--1036476	14	3.0	14	100	0	84	21	7	14	57	1.61
1046852--1046885	2	17.5	2	93	6	61	0	50	0	50	1.00
1048554--1048594	21	2.0	21	95	0	73	46	26	7	19	1.76
1052213--1052252	2	20.0	2	100	0	80	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054972--1055676	164	4.3	162	81	8	728	29	22	14	33	1.93
1054974--1055676	330	2.1	329	81	6	809	29	22	14	33	1.93
1064824--1064871	2	24.0	2	100	0	96	50	0	50	0	1.00
1088497--1088620	61	2.0	61	96	0	230	38	11	10	39	1.76
1088809--1088837	1	29.0	1	100	0	58	0	0	0	100	0.00
1090024--1090091	2	34.0	2	100	0	136	0	50	0	50	1.00
1096535--1096594	24	2.5	24	97	0	111	38	16	15	30	1.89

Tables:   1   2   3

The End!