Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold370 Parameters: 2 7 7 80 10 50 500 Length: 1088289

Tables:   1   2   3   

This is table  3  of  3  ( 316 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
911918--912142
122
1.8
122
83
0
297
36
13
24
25
1.92
912197--912436
75
3.1
75
76
14
229
39
12
22
26
1.89
912444--912573
44
3.2
44
61
24
113
32
11
24
31
1.91
912242--912576
76
4.3
78
80
9
301
35
12
23
28
1.91
933199--933240
2
21.0
2
90
0
66
50
0
45
4
1.23
936791--936831
11
3.9
11
81
12
50
41
9
21
26
1.84
939426--939642
40
5.4
40
71
15
133
32
12
25
28
1.93
939426--939501
39
1.9
40
89
2
118
34
11
25
28
1.91
939437--939520
39
2.2
39
78
4
89
35
11
25
27
1.91
940442--940468
10
2.7
10
100
0
54
62
11
7
18
1.50
943635--943942
165
1.9
165
98
0
598
25
26
16
30
1.97
945867--945927
2
30.5
2
100
0
122
0
50
0
49
1.00
949643--949673
2
15.5
2
100
0
62
0
48
0
51
1.00
952882--952915
2
17.0
2
100
0
68
50
0
50
0
1.00
963881--963956
2
38.0
2
100
0
152
50
0
50
0
1.00
964821--964866
16
2.9
16
81
12
67
26
28
17
28
1.98
967232--967580
180
1.9
179
100
0
689
34
20
15
30
1.93
968350--968377
5
5.6
5
100
0
56
39
17
0
42
1.50
978759--978789
15
2.1
15
93
0
53
12
6
16
64
1.47
982084--982235
50
3.0
50
98
1
288
15
17
15
50
1.78
982738--982778
11
3.7
11
83
0
55
9
17
34
39
1.82
982735--982778
22
2.0
22
95
0
79
9
15
31
43
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
982935--983004
33
2.1
33
81
5
79
10
27
21
41
1.85
982949--982991
11
3.9
11
75
0
50
11
16
25
46
1.80
982942--982984
22
2.0
22
100
0
86
11
23
23
41
1.87
985733--986194
168
2.8
159
78
13
454
40
13
16
29
1.87
985739--986149
168
2.5
170
82
8
474
40
13
16
29
1.86
987337--987406
10
6.8
10
90
6
113
41
38
17
2
1.64
987337--987406
21
3.4
20
92
4
113
41
38
17
2
1.64
987337--987406
31
2.3
31
94
0
122
41
38
17
2
1.64
987666--987700
11
3.3
11
88
8
54
37
37
14
11
1.82
989134--989225
10
8.8
10
94
5
148
1
17
39
42
1.56
989134--989225
21
4.4
21
93
6
152
1
17
39
42
1.56
990079--990134
20
2.8
20
83
0
67
37
16
3
42
1.65
990715--990762
5
9.4
5
82
13
62
6
18
18
56
1.62
991501--991556
11
5.3
11
82
8
71
10
21
30
37
1.87
991499--991556
21
2.8
21
97
0
107
10
20
31
37
1.86
991499--991552
10
5.2
10
82
8
63
9
20
33
37
1.84
993016--993077
21
2.8
22
78
4
63
33
16
12
37
1.87
993874--993944
33
2.2
33
94
0
124
35
9
11
43
1.74
994206--994247
2
20.5
2
95
4
75
0
50
0
47
1.01
1000169--1000214
2
23.0
2
100
0
92
0
50
0
50
1.00
1000260--1000298
2
19.5
2
100
0
78
0
51
0
48
1.00
1000585--1000645
2
30.5
2
100
0
122
50
0
49
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1004413--1004485
2
36.5
2
97
0
128
0
52
0
47
1.00
1004826--1004867
8
5.4
8
82
5
59
0
40
26
33
1.56
1005455--1005490
17
2.1
17
100
0
72
27
16
16
38
1.90
1009671--1009914
123
2.0
122
86
2
346
31
18
18
31
1.95
1017199--1017239
2
20.5
2
100
0
82
48
0
51
0
1.00
1026282--1026762
38
12.7
38
87
1
671
25
13
26
34
1.93
1027983--1028229
50
4.9
50
94
0
377
24
17
23
35
1.95
1028664--1028710
2
23.5
2
100
0
94
0
0
48
51
1.00
1028726--1028867
68
2.1
67
85
7
189
33
10
26
30
1.90
1028726--1028867
35
4.2
33
80
5
167
33
10
26
30
1.90
1028728--1028885
35
4.6
33
76
13
133
32
9
26
31
1.88
1028726--1028885
68
2.3
67
82
12
184
31
9
26
31
1.88
1028983--1029209
20
11.2
20
86
1
274
26
30
15
26
1.96
1028989--1029209
122
1.8
122
89
2
345
27
30
15
26
1.96
1030003--1030051
23
2.2
22
82
10
55
22
10
40
26
1.86
1030034--1030085
10
4.9
10
73
13
50
23
13
36
26
1.92
1030021--1030105
33
2.6
33
94
0
143
25
15
31
27
1.95
1040474--1040512
2
19.5
2
100
0
78
48
0
0
51
1.00
1039537--1040512
490
2.0
487
88
3
1437
40
13
10
34
1.80
1041607--1041669
2
31.5
2
96
0
117
49
1
0
49
1.10
1041731--1041778
2
24.0
2
95
0
87
52
0
47
0
1.00
1046758--1046801
22
2.0
22
86
8
63
47
9
2
40
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1050165--1050189
13
1.9
13
100
0
50
40
36
16
8
1.77
1055736--1055793
2
29.0
2
100
0
116
50
0
50
0
1.00
1059232--1059538
156
2.0
156
84
6
408
27
21
14
35
1.93
1063900--1063937
20
1.9
20
94
0
67
44
7
13
34
1.72
1068369--1068618
72
3.5
71
84
5
335
40
24
8
26
1.83
1068369--1068633
71
3.7
71
82
7
331
40
23
9
27
1.85
1072263--1072491
82
2.7
82
81
8
248
42
13
14
29
1.84
1084595--1084619
13
1.9
13
100
0
50
8
24
32
36
1.84
1084937--1084971
2
17.5
2
87
0
52
45
5
48
0
1.26
1086484--1086550
33
2.0
33
94
0
116
52
11
5
29
1.62

Tables:   1   2   3   

The End!