Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold226
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1071921
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.31
Warning! 95108 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:417093 original size:7 final size:8
Alignment explanation
Indices: 417076--417102 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
417066 ACTGTGTTGA
417076 CCCCCTCC
1 CCCCCTCC
417084 CCCCCTCC
1 CCCCCTCC
417092 CCCCCTCC
1 CCCCCTCC
417100 CCC
1 CCC
417103 GGCCTCCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.89, G:0.00, T:0.11
Consensus pattern (8 bp):
CCCCCTCC
Found at i:425598 original size:6 final size:6
Alignment explanation
Indices: 425575--425625 Score: 61
Period size: 6 Copynumber: 8.7 Consensus size: 6
425565 TGATCACAAT
* *
425575 TTGTCCG TTGTC- -TGTCG TTGTCG TTGTCG TCGTCG TTGTCG TCGTCG
1 TTGT-CG TTGTCG TTGTCG TTGTCG TTGTCG TTGTCG TTGTCG TTGTCG
425622 TTGT
1 TTGT
425626 AAACTTTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
4 4 0.11
6 30 0.79
7 4 0.11
ACGTcount: A:0.00, C:0.22, G:0.31, T:0.47
Consensus pattern (6 bp):
TTGTCG
Found at i:425604 original size:12 final size:12
Alignment explanation
Indices: 425587--425625 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
425577 GTCCGTTGTC
*
425587 TGTCGTTGTCGT
1 TGTCGTCGTCGT
425599 TGTCGTCGTCGT
1 TGTCGTCGTCGT
425611 TGTCGTCGTCGT
1 TGTCGTCGTCGT
425623 TGT
1 TGT
425626 AAACTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.21, G:0.33, T:0.46
Consensus pattern (12 bp):
TGTCGTCGTCGT
Found at i:426144 original size:166 final size:166
Alignment explanation
Indices: 425797--426474 Score: 957
Period size: 166 Copynumber: 4.1 Consensus size: 166
425787 TATTTTTCAG
* * * **** *
425797 AAATCTTCTTCTCAAAAACTATTCGGCCTGAAAAGCTTCAACT-TGTGTGGAGGCATCCTCAGGT
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGC-TCAAATCAAAATGGAAGCATCCTCAGGT
* * **
425861 AGTGTAGATTCAAGTTTGTTCAAATCATGTTCCCCGGGGGTAGGG-AGGGCCACAAGAGGGGGAT
65 AGTGTAGATTCAAGTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGAT
*
425925 CATGTTTTACATAGGAATATATAGAGAAAATCTTTAA
130 CAAGTTTTACATAGGAATATATAGAGAAAATCTTTAA
* * *
425962 AAATCTTCTTCTCAAAAATTATTAGGCCAGAAAAGCTCAAATCAAAATGGGAGCATTCTCAGGTA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGGTA
*
426027 GTGTAGAATCAAGTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATC
*
426092 AAGTTTTAAATAGGAATATATAGAGAAAATCTTTAA
131 AAGTTTTACATAGGAATATATAGAGAAAATCTTTAA
*
426128 AAATCTTCTTCTCAAAAACTAAACTATTAGGCCAGAAAAGCTCAAATTAAAAATGGAAGCATCCT
1 AAATCTTCTTCTC---AA--AAACTATTAGGCCAGAAAAGCTCAAA-TCAAAATGGAAGCATCCT
**
426193 CAGGTAGTGTAGATTCGGGTTTGTTCAAATCAT-AGTCCCCGGGGGTAGGGTGGGGCCACAATTG
60 CAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGA-TCCCCGGGGGTAGGGTGGGGCCACAATTG
*
426257 GGGGATCAATTTTTACATAGGAATATATAGAGAAAATCTTTAA
124 GGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCTTTAA
* *** * *
426300 AAATCTTCTTCTCAGAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGGTA
* * * *
426365 CTGTAGATTCAAGTTTGTTCAAAACATGGTCCCCGGGGGTAGGGTGGGTCCACAATTGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATC
*
426430 AAGTTTTACATAGGAATATATAGAGAGAATCTTTAA
131 AAGTTTTACATAGGAATATATAGAGAAAATCTTTAA
*
426466 AAATATTCT
1 AAATCTTCT
426475 GGGAAAGTTT
Statistics
Matches: 461, Mismatches: 42, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
164 5 0.01
165 90 0.20
166 183 0.40
167 26 0.06
169 3 0.01
171 26 0.06
172 128 0.28
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (166 bp):
AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGGTA
GTGTAGATTCAAGTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATC
AAGTTTTACATAGGAATATATAGAGAAAATCTTTAA
Found at i:426464 original size:338 final size:337
Alignment explanation
Indices: 425844--426474 Score: 1014
Period size: 338 Copynumber: 1.9 Consensus size: 337
425834 TCAACTTGTG
*
425844 TGGAGGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGTTCCCCGGGGGTAGGGAGG
1 TGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGTTCCCCGGGGGTAGGGAGG
425909 GCCACAAGAGGGGGATCATGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCT
66 GCCACAAGAGGGGGATCATGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCT
* * * * *
425974 CAAAAATTATTAGGCCAGAAAAGCTCAAATCAAAATGGGAGCATTCTCAGGTAGTGTAGAATCAA
131 CAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGATACTGTAGAATCAA
*
426039 GTTTGTTCAAATCATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTAAATA
196 GTTTGTTCAAAACATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTAAATA
*
426104 GGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTAAACTATTAGGCCAGAAAAGC
261 GGAATATATAGAGAAAATCTTTAAAAATATTCTTCTCAAAAACTAAACTATTAGGCCAGAAAAGC
426169 TCAAATTAAAAA
326 TCAAATTAAAAA
** *
426181 TGGAAGCATCCTCAGGTAGTGTAGATTCGGGTTTGTTCAAATCATAG-TCCCCGGGGGTAGGGTG
1 TGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCAT-GTTCCCCGGGGGTAGGG-A
**
426245 GGGCCACAATTGGGGGATCAAT-TTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCT
64 GGGCCACAAGAGGGGGATC-ATGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCT
* *** * *
426309 TCTCAGAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGATACTGTAGATT
128 TCTCAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGATACTGTAGAAT
* * *
426374 CAAGTTTGTTCAAAACATGGTCCCCGGGGGTAGGGTGGGTCCACAATTGGGGGATCAAGTTTTAC
193 CAAGTTTGTTCAAAACATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTAA
*
426439 ATAGGAATATATAGAGAGAATCTTTAAAAATATTCT
258 ATAGGAATATATAGAGAAAATCTTTAAAAATATTCT
426475 GGGAAAGTTT
Statistics
Matches: 268, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
337 57 0.21
338 209 0.78
339 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (337 bp):
TGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGTTCCCCGGGGGTAGGGAGG
GCCACAAGAGGGGGATCATGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCT
CAAAAACTATTAGGCCAGAAAAGCTCAAATCAAAATGGAAGCATCCTCAGATACTGTAGAATCAA
GTTTGTTCAAAACATGATCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTAAATA
GGAATATATAGAGAAAATCTTTAAAAATATTCTTCTCAAAAACTAAACTATTAGGCCAGAAAAGC
TCAAATTAAAAA
Found at i:434193 original size:171 final size:170
Alignment explanation
Indices: 433929--434273 Score: 486
Period size: 171 Copynumber: 2.0 Consensus size: 170
433919 AACCATAAGA
* *
433929 CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCCATGTTGTGAAAATCG
1 CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCCAAGTTGTGAAAATCA
* * * * * *
433994 TTACCCCGGGCGGTAGGATGGGGCCACAATGGGGGGAGGGGTCGAAGTTTT-CCATAGG-A-ATA
66 TGACCCCAGGCGGTAGGATGAGGCCACAAT----GG-GGGGT-GAAATTTTAACAAAGGAATATA
434056 -TA-TAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
125 TTATTAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
*
434100 CCAGGAATGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCCAAGTTGTGAAAATCA
1 CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCCAAGTTGTGAAAATCA
* *
434165 TGATCCCCAGG-GGTAGGGTGAGGCCACAATGGGGGGTTAAATTTTAACAAAGGAATATATTATT
66 TGA-CCCCAGGCGGTAGGATGAGGCCACAATGGGGGGTGAAATTTTAACAAAGGAATATATTATT
434229 AGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
130 AGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
434270 CCAG
1 CCAG
434274 ATGATTCTTT
Statistics
Matches: 157, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
165 6 0.04
166 10 0.06
167 3 0.02
168 3 0.02
169 2 0.01
170 46 0.29
171 81 0.52
172 6 0.04
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (170 bp):
CCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCCAAGTTGTGAAAATCA
TGACCCCAGGCGGTAGGATGAGGCCACAATGGGGGGTGAAATTTTAACAAAGGAATATATTATTA
GAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
Found at i:437796 original size:37 final size:37
Alignment explanation
Indices: 437748--438666 Score: 1277
Period size: 37 Copynumber: 24.7 Consensus size: 37
437738 TAGCCCAGTG
* * * *
437748 AGTGTTAACCGATCGGGATCTTCCTTGCATATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
437785 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
437822 AGTGTTCACCGATCGGGATCTCCCTAGCCTAGTCAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* * * * *
437859 AATGTTTACAGATCGGGATCTTCCTTGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
437896 AGTGTTCACCGATCGGGATCTCCCTAGCCTAGTCAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* * * * * *
437933 AATGTTTACAGATCGGGATCTTCCTAGCCTAGTCAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
437970 AATGTTCACCGATCGGGATCTTCCTAGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
438007 AATGTTCACCGATCGGGATCTCCCTAGCCTATTAAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
*
438044 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTAAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
*
438081 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTAAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
*
438118 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTAAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
438155 AGTGTTCACCGATCGGGATCTCCCTTGCCTATTGAGA
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
** * *
438192 AGTGTT-ATCCGATCGGGATCTCCCTAGCCTGGTCAAT
1 AGTGTTCA-CCGATCGGGATCTCCCTAGCCTATTGAGT
* * *
438229 AATGTTTACCGATCGGGATCTTCCTAGCCTAGTT-AGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTA-TTGAGT
* * * *
438266 AATGTTTACCGATCGGGATCTTCCTTGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
438303 AGTTTTCACCGATCGGGATCTCCCTTGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
438340 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
**
438377 AGTGTTCACCGATCGGGATCTCCCTTCCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* *
438414 AGTGTTCACCGATCGGGATCTTCCTAGCCTATTAAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
438451 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGTACGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATT--G-A-GT
*
438492 AGTGTTCACCGATCGGGATCTCCCTAGTCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
*
438529 AGTGTTCACCGATCGGGATCTTCCTAGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
438566 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
* * * * *
438603 AGTGTTCGCCGATTGTGATCTTCCTAGCCT-TGTGAAT
1 AGTGTTCACCGATCGGGATCTCCCTAGCCTAT-TGAGT
*
438640 AGTGTTCATCGATCGGGATCTCCCTAG
1 AGTGTTCACCGATCGGGATCTCCCTAG
438667 TCTAATTAGA
Statistics
Matches: 799, Mismatches: 74, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
36 4 0.01
37 756 0.95
38 3 0.00
39 1 0.00
40 1 0.00
41 34 0.04
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (37 bp):
AGTGTTCACCGATCGGGATCTCCCTAGCCTATTGAGT
Found at i:443694 original size:320 final size:319
Alignment explanation
Indices: 443112--443750 Score: 1269
Period size: 320 Copynumber: 2.0 Consensus size: 319
443102 TTCTTTAGTT
443112 TCCACTTTGGTGGTCAGAAATTCGACAACAGAAGACTGTCCACATTCCGCTGCTACTAATAAAGG
1 TCCACTTTGGTGGTCAGAAATTCGACAACAGAAGACTGTCCACATTCCGCTGCTACTAATAAAGG
443177 TGTCATTCCATAATCATTTGGAATTTGCTTTCCGTAAAATCTGACTAAATCCTGAACTACTTCCA
66 TGTCATTCCATAATCATTTGGAATTTGCTTTCCGTAAAATCTGACTAAATCCTGAACTACTTCCA
443242 AATGTCCACACTCTGCAGCAAAATGCATTGCAGTGGCACCACAGTGCGCGGTTGAATCTGGGTTT
131 AATGTCCACACTCTGCAGCAAAATGCATTGCAGTGGCACCACAGTGCGCGGTTGAATCTGGGTTT
443307 GCTCCCTTTTCAAGTAAATAGCGCACAACTTCTGCATGTCCTTTGTAACTGGTTATCATTAAGCA
196 GCTCCCTTTTCAAGTAAATAGCGCACAACTTCTGCATGTCCTTTGTAACTGGTTATCATTAAGCA
443372 GGTGTTATTGTATTTGTTGGGGATAGAAATATCAGCACCATGTTCGACTAAGCACTGTA
261 GGTGTTATTGTATTTGTTGGGGATAGAAATATCAGCACCATGTTCGACTAAGCACTGTA
443431 NTCCACTTTGGTGGTCAGAAATTCGACAACAGAAGACTGTCCACATTCCGCTGCTACTAATAAAG
1 -TCCACTTTGGTGGTCAGAAATTCGACAACAGAAGACTGTCCACATTCCGCTGCTACTAATAAAG
443496 GTGTCATTCCATAATCATTTGGAATTTGCTTTCCGTAAAATCTGACTAAATCCTGAACTACTTCC
65 GTGTCATTCCATAATCATTTGGAATTTGCTTTCCGTAAAATCTGACTAAATCCTGAACTACTTCC
443561 AAATGTCCACACTCTGCAGCAAAATGCATTGCAGTGGCACCACAGTGCGCGGTTGAATCTGGGTT
130 AAATGTCCACACTCTGCAGCAAAATGCATTGCAGTGGCACCACAGTGCGCGGTTGAATCTGGGTT
443626 TGCTCCCTTTTCAAGTAAATAGCGCACAACTTCTGCATGTCCTTTGTAACTGGTTATCATTAAGC
195 TGCTCCCTTTTCAAGTAAATAGCGCACAACTTCTGCATGTCCTTTGTAACTGGTTATCATTAAGC
443691 AGGTGTTATTGTATTTGTTGGGGATAGAAATATCAGCACCATGTTCGACTAAGCACTGTA
260 AGGTGTTATTGTATTTGTTGGGGATAGAAATATCAGCACCATGTTCGACTAAGCACTGTA
443751 CAACGTCCAG
Statistics
Matches: 319, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
320 319 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (319 bp):
TCCACTTTGGTGGTCAGAAATTCGACAACAGAAGACTGTCCACATTCCGCTGCTACTAATAAAGG
TGTCATTCCATAATCATTTGGAATTTGCTTTCCGTAAAATCTGACTAAATCCTGAACTACTTCCA
AATGTCCACACTCTGCAGCAAAATGCATTGCAGTGGCACCACAGTGCGCGGTTGAATCTGGGTTT
GCTCCCTTTTCAAGTAAATAGCGCACAACTTCTGCATGTCCTTTGTAACTGGTTATCATTAAGCA
GGTGTTATTGTATTTGTTGGGGATAGAAATATCAGCACCATGTTCGACTAAGCACTGTA
Found at i:444640 original size:14 final size:16
Alignment explanation
Indices: 444623--444654 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
444613 AATTTTCGTG
444623 TTATTT-TTCTGC-TT
1 TTATTTGTTCTGCATT
444637 TTATTTGTTCTGCATT
1 TTATTTGTTCTGCATT
444653 TT
1 TT
444655 TATTGTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 6 0.38
16 4 0.25
ACGTcount: A:0.09, C:0.12, G:0.09, T:0.69
Consensus pattern (16 bp):
TTATTTGTTCTGCATT
Found at i:451361 original size:2 final size:2
Alignment explanation
Indices: 451354--451412 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
451344 GACACCCCAG
451354 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
451396 CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT C
451413 GTTTGGTTTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:454245 original size:17 final size:17
Alignment explanation
Indices: 454223--454255 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
454213 TGCCATCTGC
454223 TAATGAGACCAGCTATT
1 TAATGAGACCAGCTATT
*
454240 TAATGAGACTAGCTAT
1 TAATGAGACCAGCTAT
454256 CCTCAACTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (17 bp):
TAATGAGACCAGCTATT
Found at i:457160 original size:22 final size:21
Alignment explanation
Indices: 457135--457203 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
457125 ACATGTAACA
457135 AAAAAAAAATACATAAATAAAT
1 AAAAAAAAATA-ATAAATAAAT
* * * *
457157 AAAAAAAAAAAAACAAAGCAAAA
1 -AAAAAAAAATAATAAA-TAAAT
457180 AAAAAAAAATAAT-AAT-AAT
1 AAAAAAAAATAATAAATAAAT
457199 AAAAA
1 AAAAA
457204 CACCACACAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
19 7 0.19
21 2 0.05
22 15 0.41
23 13 0.35
ACGTcount: A:0.83, C:0.04, G:0.01, T:0.12
Consensus pattern (21 bp):
AAAAAAAAATAATAAATAAAT
Found at i:458097 original size:17 final size:16
Alignment explanation
Indices: 458075--458111 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
458065 AAAAATACAC
*
458075 ACAAAAAACGGCAAAAA
1 ACAAAAAAC-CCAAAAA
458092 ACAAAAAACCCAAAAA
1 ACAAAAAACCCAAAAA
458108 ACAA
1 ACAA
458112 TAAGCATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.73, C:0.22, G:0.05, T:0.00
Consensus pattern (16 bp):
ACAAAAAACCCAAAAA
Found at i:462270 original size:2 final size:2
Alignment explanation
Indices: 462263--462325 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
462253 CAGTTTTGCT
462263 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
462305 AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG A
462326 AGTCGGCGAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:465318 original size:15 final size:14
Alignment explanation
Indices: 465292--465326 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
465282 AAATAACATG
465292 AATGTTATTTGTTA
1 AATGTTATTTGTTA
*
465306 ATTGTTAATTTGTTA
1 AATGTT-ATTTGTTA
465321 AATGTT
1 AATGTT
465327 CATTGTTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (14 bp):
AATGTTATTTGTTA
Found at i:474040 original size:2 final size:2
Alignment explanation
Indices: 474033--474070 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
474023 GGCATTTATG
*
474033 GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
474071 ATCGTACCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:482969 original size:88 final size:88
Alignment explanation
Indices: 482868--483043 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
482858 ATGCTTAGTA
*
482868 TATGTATAATAATAGATATTGCAGTAGTTTTACTTGTCAATTATGCCAAATTTCAATGAAGAAAA
1 TATGTATAATAATAGATATTGCAGTAGTTTTACTCGTCAATTATGCCAAATTTCAATGAAGAAAA
482933 ATACGTACAAAATTTGCTAACAC
66 ATACGTACAAAATTTGCTAACAC
482956 TATGTATAATAATAGATATTGCAGTAGTTTTACTCGTCAATTATGCCAAATTTCAATGAAGAAAA
1 TATGTATAATAATAGATATTGCAGTAGTTTTACTCGTCAATTATGCCAAATTTCAATGAAGAAAA
483021 ATACGTACAAAATTTGCTAACAC
66 ATACGTACAAAATTTGCTAACAC
483044 AACAAACGTC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (88 bp):
TATGTATAATAATAGATATTGCAGTAGTTTTACTCGTCAATTATGCCAAATTTCAATGAAGAAAA
ATACGTACAAAATTTGCTAACAC
Found at i:490894 original size:5 final size:5
Alignment explanation
Indices: 490854--490891 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
490844 AGGTATCTGA
*
490854 GTTTC GTTTT GTTTT GTTTT GTTTT G-TTT GTTTT -TTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT
490892 TTTAGGGGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.00, C:0.03, G:0.18, T:0.79
Consensus pattern (5 bp):
GTTTT
Found at i:491339 original size:2 final size:2
Alignment explanation
Indices: 491332--491357 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
491322 TTTGGTTGCG
491332 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
491358 TAACGAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:492802 original size:2 final size:2
Alignment explanation
Indices: 492797--492847 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
492787 TAAAAAAGAA
492797 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
492839 TC TC TC TC T
1 TC TC TC TC T
492848 GTACTAACTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:495190 original size:27 final size:27
Alignment explanation
Indices: 495160--495212 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
495150 GTTGTGTCAC
*
495160 AATGACTTTCAGTGTGTT-ACAGTAACT
1 AATGACATTCAGTGT-TTAACAGTAACT
495187 AATGACATTCAGTGTTTAACAGTAAC
1 AATGACATTCAGTGTTTAACAGTAAC
495213 ATCATAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (27 bp):
AATGACATTCAGTGTTTAACAGTAACT
Found at i:495542 original size:40 final size:39
Alignment explanation
Indices: 495498--495579 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 39
495488 TGATGTCCAC
495498 TGTGTAAAAT-TTAACTTCCGTTTATCACTATGACATTCAG
1 TGTGT-AAATGTT-ACTTCCGTTTATCACTATGACATTCAG
* ** **
495538 TGTGTAAGTGTTACTTTGGTTTATCACTATGGGATTCAG
1 TGTGTAAATGTTACTTCCGTTTATCACTATGACATTCAG
495577 TGT
1 TGT
495580 ATACTTGTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 29 0.81
40 7 0.19
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (39 bp):
TGTGTAAATGTTACTTCCGTTTATCACTATGACATTCAG
Found at i:496728 original size:49 final size:49
Alignment explanation
Indices: 496658--496807 Score: 176
Period size: 49 Copynumber: 3.1 Consensus size: 49
496648 TCTTCACGTG
* * * *
496658 ACAAACATAACTGTTCTTTTATCTGGAGGATGTCTATTTCACATATCTA
1 ACAAACATAGCCGTTCCTTTATCTGGAGGATGTCTATTTCACATATGTA
* * *
496707 ACAAATATAGCCGTTCCTTTATCTGAAGGATGTCTTTTTCACATATGTA
1 ACAAACATAGCCGTTCCTTTATCTGGAGGATGTCTATTTCACATATGTA
** * **
496756 ACAGGCATATCC-TTTGTCTTATCTGGAGGATGTCTATTTCACATATGTA
1 ACAAACATAGCCGTTCCT-TTATCTGGAGGATGTCTATTTCACATATGTA
496805 ACA
1 ACA
496808 GGCATATCCT
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 3 0.04
49 82 0.96
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (49 bp):
ACAAACATAGCCGTTCCTTTATCTGGAGGATGTCTATTTCACATATGTA
Found at i:496808 original size:49 final size:48
Alignment explanation
Indices: 496676--496856 Score: 200
Period size: 49 Copynumber: 3.6 Consensus size: 48
496666 AACTGTTCTT
* *** * * *
496676 TTATCTGGAGGATGTCTATTTCACATATCTAACAAATATAGCCGTTCC
1 TTATCTGGAGGATGTCTATTTCACATATGTAACAGGCATATCCTTTTC
* *
496724 TTTATCTGAAGGATGTCTTTTTCACATATGTAACAGGCATATCCTTTGTC
1 -TTATCTGGAGGATGTCTATTTCACATATGTAACAGGCATATCCTTT-TC
496774 TTATCTGGAGGATGTCTATTTCACATATGTAACAGGCATATCCTTTAATTCTC
1 TTATCTGGAGGATGTCTATTTCACATATGTAACAGGCATATCC--T--TT-TC
* *
496827 TTATCTGGAGGATGTCTTTTTCACAGATGT
1 TTATCTGGAGGATGTCTATTTCACATATGT
496857 GACATTGCAG
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
49 79 0.70
50 1 0.01
51 1 0.01
53 32 0.28
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (48 bp):
TTATCTGGAGGATGTCTATTTCACATATGTAACAGGCATATCCTTTTC
Found at i:497589 original size:2 final size:2
Alignment explanation
Indices: 497582--497633 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
497572 AATTATTAAA
* *
497582 TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC GC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
497624 TC TC TC TC TC
1 TC TC TC TC TC
497634 CAAACTCTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50
Consensus pattern (2 bp):
TC
Found at i:506676 original size:1 final size:1
Alignment explanation
Indices: 506670--506697 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
506660 NNNNNNNNNN
506670 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
506698 GGGGGGGGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:509081 original size:12 final size:12
Alignment explanation
Indices: 509064--509088 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
509054 AATTTCAGGG
509064 TTTTTTGTTTGT
1 TTTTTTGTTTGT
509076 TTTTTTGTTTGT
1 TTTTTTGTTTGT
509088 T
1 T
509089 GTTGACTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTTTGTTTGT
Found at i:517740 original size:38 final size:38
Alignment explanation
Indices: 517673--517748 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
517663 TATTAATCTT
* *
517673 CATGAAAATTATAACGTTCAGTCTTAAGACCAATTGCC
1 CATGAAAATTATAACGTTAAGTCTGAAGACCAATTGCC
* * *
517711 CATGAAAATTATGATGTTAAGTGTGAAGACCAATTGCC
1 CATGAAAATTATAACGTTAAGTCTGAAGACCAATTGCC
517749 TGATATTGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (38 bp):
CATGAAAATTATAACGTTAAGTCTGAAGACCAATTGCC
Found at i:519249 original size:2 final size:2
Alignment explanation
Indices: 519244--519291 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
519234 AAGCCCCCCT
519244 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
519286 TC TC TC
1 TC TC TC
519292 GTTTCCTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:520361 original size:2 final size:2
Alignment explanation
Indices: 520354--520396 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
520344 CAGCAAACAG
520354 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
520396 T
1 T
520397 GCGCATGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:535910 original size:2 final size:2
Alignment explanation
Indices: 535905--535932 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
535895 TTTTTTTTTT
535905 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
535933 TACCCAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:556008 original size:131 final size:130
Alignment explanation
Indices: 555774--556034 Score: 513
Period size: 131 Copynumber: 2.0 Consensus size: 130
555764 GGGGGGGGGG
555774 GGGGGGAGCTTGCGACCCTTCGCGCATGGTATAAATGATCTTATGACCAAGGCCGCGTCCAGGAT
1 GGGGGGAGCTTGCGACCCTTCGCGCATGGTATAAATGATCTTATGACCAAGGCCGCGTCCAGGAT
555839 TTTTTATCTTAGGATATGGCTTTCATCTCCATTTATATCTTACATGTAATCATCTCCGTTTGCCA
66 TTTTTATCTTAGGATATGGCTTTCATCTCCATTTATATCTTACATGTAATCATCTCCGTTTGCCA
555904 NGGGGGGAGCTTGCGACCCTTCGCGCATGGTATAAATGATCTTATGACCAAGGCCGCGTCCAGGA
1 -GGGGGGAGCTTGCGACCCTTCGCGCATGGTATAAATGATCTTATGACCAAGGCCGCGTCCAGGA
555969 TTTTTTATCTTAGGATATGGCTTTCATCTCCATTTATATCTTACATGTAATCATCTCCGTTTGCC
65 TTTTTTATCTTAGGATATGGCTTTCATCTCCATTTATATCTTACATGTAATCATCTCCGTTTGCC
556034 A
130 A
556035 AGTGTTCCTA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (130 bp):
GGGGGGAGCTTGCGACCCTTCGCGCATGGTATAAATGATCTTATGACCAAGGCCGCGTCCAGGAT
TTTTTATCTTAGGATATGGCTTTCATCTCCATTTATATCTTACATGTAATCATCTCCGTTTGCCA
Found at i:563611 original size:16 final size:16
Alignment explanation
Indices: 563590--563632 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
563580 AAACAGAAAC
563590 TAGGGCGAACGCATTT
1 TAGGGCGAACGCATTT
563606 TAGGGCGAACGCATTT
1 TAGGGCGAACGCATTT
* *
563622 CAGGGCCAACG
1 TAGGGCGAACG
563633 AACATACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.19
Consensus pattern (16 bp):
TAGGGCGAACGCATTT
Found at i:589520 original size:199 final size:196
Alignment explanation
Indices: 589140--589523 Score: 687
Period size: 199 Copynumber: 1.9 Consensus size: 196
589130 AATTACTAGC
*
589140 AATCAAATCAATTGCATAGGAGAGGCACAGATAACAGAACAAACTTGCTATCCTACCAGACGAAA
1 AATCAAATCAATTGCATAGGAGAGGCACAGATAACAGAACAAACTTCCTATCCTACCAGACGAAA
*
589205 AAGTTTTTAAAATTATTTTTAAAAAAAATCATGATTAGGATAATGAAAATGAATATTCAATTCAC
66 AAGTTTTTAAAATTATTTTTAAAAAAAATCATGATTAGGATAATGAAAATAAATATTCAATTCAC
589270 ACCCAACTTTATAAAAAATTTTGATTCAGTGCCAAAGTGCGAGTATTCAAATCGAATTGCTTTAC
131 ACCCAACTTTATAAAAAATTTTGATTCAGTGCCAAAGTGCGAGTATTCAAATCGAATTGCTTTAC
589335 T
196 T
**
589336 NAATCAAATCAATTGCATAGGAGAGGCACAGATAACAGAACAAACTTCCTATCCTACCAGGTGAA
1 -AATCAAATCAATTGCATAGGAGAGGCACAGATAACAGAACAAACTTCCTATCCTACCAGACGAA
*
589401 AAAGTTTTTAAAATTATTTTTAAAAAAAAAATCATGATTAGGATAATGCAAATAAATATTCAATT
65 AAAGTTTTTAAAATTATTTTT--AAAAAAAATCATGATTAGGATAATGAAAATAAATATTCAATT
*
589466 CACACCCAACTTTATAACAAATTTTGATTCAGTGCCAAAGTGCGAGTATTCAAATCGA
128 CACACCCAACTTTATAAAAAATTTTGATTCAGTGCCAAAGTGCGAGTATTCAAATCGA
589524 TTAAAATCCT
Statistics
Matches: 179, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
197 82 0.46
199 97 0.54
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (196 bp):
AATCAAATCAATTGCATAGGAGAGGCACAGATAACAGAACAAACTTCCTATCCTACCAGACGAAA
AAGTTTTTAAAATTATTTTTAAAAAAAATCATGATTAGGATAATGAAAATAAATATTCAATTCAC
ACCCAACTTTATAAAAAATTTTGATTCAGTGCCAAAGTGCGAGTATTCAAATCGAATTGCTTTAC
T
Found at i:602247 original size:166 final size:166
Alignment explanation
Indices: 602045--602757 Score: 1250
Period size: 166 Copynumber: 4.3 Consensus size: 166
602035 GGTATTTTTC
** * * *** *
602045 AAAAATCTTCTTCTCAAAAACTAT-TTGCCAAGAAAAGCTTACACTT-GTGTGGAGGCATCCTCA
1 AAAAATCTTCTTCTCAAAAACTATCAGGCC-AGAAAAGCTCA-AATTAAAATGGAAGCATCCTCA
* * * * * *
602108 GGTAGTGTATATTCAAGTTTGTTCAAATCGTGGTCCCCGGGGGTAGGGTGGGGCCACAATAGGGG
64 AGTAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGG
* *
602173 GATGAAGTTTTACATAGGAATTTATAGAGAAAATCTTT
129 GATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
602211 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
1 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
602276 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
602341 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
602377 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
1 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
602442 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
602507 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
602543 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
1 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
602608 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
602673 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
602709 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAA
1 AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAA
602758 NNNNNNNNNN
Statistics
Matches: 529, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
165 3 0.01
166 523 0.99
167 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (166 bp):
AAAAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGAAGCATCCTCAAG
TAGTGTAGATTCAAGTTTGTTCCAATCATGGTCCCCGGGGGTAGAGTGGGGCCACAATTGGGGGA
TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
Found at i:609962 original size:19 final size:19
Alignment explanation
Indices: 609938--610001 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
609928 TTTCATTACG
609938 TATTTATATTTAAATATTA
1 TATTTATATTTAAATATTA
*
609957 TATTTATATTTAAA-AATA
1 TATTTATATTTAAATATTA
*
609975 TAATATAATATTT-AATATTTA
1 T-AT-TTATATTTAAATA-TTA
609996 TATTTA
1 TATTTA
610002 AACCCATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 4 0.11
19 20 0.54
20 10 0.27
21 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTATATTTAAATATTA
Found at i:611842 original size:16 final size:16
Alignment explanation
Indices: 611821--611860 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
611811 TTGATAAGAC
611821 GCTTAGGCCCCAACAT
1 GCTTAGGCCCCAACAT
*
611837 GCTTAGGCCCCAAGAT
1 GCTTAGGCCCCAACAT
*
611853 GTTTAGGC
1 GCTTAGGC
611861 ACCAGCCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (16 bp):
GCTTAGGCCCCAACAT
Found at i:615214 original size:12 final size:12
Alignment explanation
Indices: 615197--615231 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
615187 GAATCACCAT
615197 GTCCGTCTGTCC
1 GTCCGTCTGTCC
615209 GTCCGTCTGTCC
1 GTCCGTCTGTCC
*
615221 GTCCCTCTGTC
1 GTCCGTCTGTC
615232 TGTGCAATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.43, G:0.23, T:0.34
Consensus pattern (12 bp):
GTCCGTCTGTCC
Found at i:615506 original size:147 final size:146
Alignment explanation
Indices: 615239--615804 Score: 843
Period size: 147 Copynumber: 3.9 Consensus size: 146
615229 GTCTGTGCAA
*
615239 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACCTCACACAAAGATTGC
1 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
*
615304 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTCGGGAAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGAAAGGTCAAGGTCACTGGC
615369 AGAAAAAAATGCAAAAT
131 AG-AAAAAATGCAAAAT
* * * * *
615386 TCGTGTCCGGTCCATATCTTTCTTTTGGGGAAACATTGGAAGTTTTTAATTCACACAATGATTGC
1 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
*
615451 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGTAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGAAAGGTCAAGGTCACTGGC
*
615516 AGAAAAAGTGCAAAAT
131 AGAAAAAATGCAAAAT
* * * **
615532 TTGTGTCTGGTCCATATC-TTCATTATGGAGAAGCATTATATATGTTCTTACTTCACACAAAGAT
1 TCGTGTCCGGTCCATATCTTTC-TTATGGAGAAACATTGGA-A-GTTCTTACTTCACACAAAGAT
* *
615596 TGCTTATAACCTAAGGATGTGTCATGACCTTGACCCAAGGTCATTTGGGAAAGGTCAAGGTCACT
63 TGCTTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGAAAGGTCAAGGTCACT
615661 GGCAG-AAAAATGCAAAAT
128 GGCAGAAAAAATGCAAAAT
* * *
615679 CCGTGTCCGGTCCATATCTTTCTTATTGGGGAAACATTGGAAGTTTTTACTTCACA-AAAGGATT
1 TCGTGTCCGGTCCATATCTTTCTTA-TGGAGAAACATTGGAAGTTCTTACTTCACACAAA-GATT
* * *
615743 GCTTATGACCTACGGGTGTGTCATGACCTTGACCCAAGGTCAATTGAGG-AAGTTCAAGGTCA
64 GCTTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTG-GGAAAGGTCAAGGTCA
615805 TTGTTTCAAA
Statistics
Matches: 376, Mismatches: 36, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
145 6 0.02
146 113 0.30
147 158 0.42
148 99 0.26
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (146 bp):
TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGAAAGGTCAAGGTCACTGGC
AGAAAAAATGCAAAAT
Found at i:620094 original size:95 final size:95
Alignment explanation
Indices: 619931--620104 Score: 312
Period size: 95 Copynumber: 1.8 Consensus size: 95
619921 CATTTTTATT
* *
619931 TAGTTGATTCTGTCACAAATTCTCATTTTCACCATACCTTTACTAGTGCATGTGTTTAAACATGT
1 TAGTTGATCCTGTCACAAATTCTCATTTTCACCATACCTTTACTAGTGCATGTGTATAAACATGT
619996 AGATTTTAATTTTTTTTTTAAAGTTACCAG
66 AGATTTTAATTTTTTTTTTAAAGTTACCAG
* *
620026 TAGTTGATCCTGTCACAAATTCTCATTTTCACCATACCTTTACTAGTGCATGTGTATAAGCATTT
1 TAGTTGATCCTGTCACAAATTCTCATTTTCACCATACCTTTACTAGTGCATGTGTATAAACATGT
620091 AGATTTTAATTTTT
66 AGATTTTAATTTTT
620105 ATAAAAAAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 75 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.45
Consensus pattern (95 bp):
TAGTTGATCCTGTCACAAATTCTCATTTTCACCATACCTTTACTAGTGCATGTGTATAAACATGT
AGATTTTAATTTTTTTTTTAAAGTTACCAG
Found at i:629178 original size:108 final size:107
Alignment explanation
Indices: 628989--629197 Score: 409
Period size: 108 Copynumber: 1.9 Consensus size: 107
628979 AATCGCTTTA
628989 GTACAATGATCTATATGCAATATCTCTTATATAAAAATTCTGATCTCTTTACACGGGCTTCCATT
1 GTACAATGATCTATATGCAATATCTCTTATATAAAAATTCTGATCTCTTTACACGGGCTTCCATT
629054 AAGAAGTGTTTGACATAAAATGAAAAATTATACAATNGCTTAG
66 AAGAAGTGTTTGACATAAAATGAAAAATTATACAAT-GCTTAG
629097 GTACAATGATCTATATGCAATATCTCTTATATAAAAATTCTGATCTCTTTACACGGGCTTCCATT
1 GTACAATGATCTATATGCAATATCTCTTATATAAAAATTCTGATCTCTTTACACGGGCTTCCATT
629162 AAGAAGTGTTTGACATAAAATGAAAAATTATACAAT
66 AAGAAGTGTTTGACATAAAATGAAAAATTATACAAT
629198 ACAAATTGAG
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (107 bp):
GTACAATGATCTATATGCAATATCTCTTATATAAAAATTCTGATCTCTTTACACGGGCTTCCATT
AAGAAGTGTTTGACATAAAATGAAAAATTATACAATGCTTAG
Found at i:631581 original size:2 final size:2
Alignment explanation
Indices: 631574--631618 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
631564 ATGACAAACC
631574 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
631616 AG A
1 AG A
631619 AAGATTCCTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:638764 original size:20 final size:20
Alignment explanation
Indices: 638727--638764 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
638717 CATTAAAAAA
*
638727 ATAAAAATAATATCATGATT
1 ATAAAAATAATATAATGATT
638747 ATAACAAATAATA-AATGA
1 ATAA-AAATAATATAATGA
638765 AATAACAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (20 bp):
ATAAAAATAATATAATGATT
Found at i:644468 original size:17 final size:17
Alignment explanation
Indices: 644442--644481 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
644432 ACCTTTTAAC
*
644442 ATAT-TTACACTATTAT
1 ATATATTACACTAATAT
644458 ATATATTACACTAATAT
1 ATATATTACACTAATAT
644475 AT-TATTA
1 ATATATTA
644482 GCAATGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTACACTAATAT
Found at i:644569 original size:13 final size:13
Alignment explanation
Indices: 644551--644575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
644541 TTACAAATAT
644551 TAAAATGCTAAAA
1 TAAAATGCTAAAA
644564 TAAAATGCTAAA
1 TAAAATGCTAAA
644576 GTTGTCCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (13 bp):
TAAAATGCTAAAA
Found at i:654104 original size:62 final size:62
Alignment explanation
Indices: 654007--654316 Score: 521
Period size: 62 Copynumber: 5.0 Consensus size: 62
653997 ACTTTTTTTG
* * *
654007 GAATATTCAGTAATGATTTAATTATCTTGTTTGTAGGACACATATCCTAGCATCATTCCATT
1 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
* * *
654069 GAATATTCAGTAATGAGTTAAATATTTTGTTTGTAGAACACATATTTTAGCATCATTCCATT
1 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
654131 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
1 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
* * *
654193 AAATATTCAGAAATGAGTTAATTATCTTGTTTGTAGAACACATATCCTAGCATCATTCCATT
1 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
* *
654255 GAATATTCAGTAATGATTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCCTTCCATT
1 GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
654317 ACTGGACCTA
Statistics
Matches: 231, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 231 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (62 bp):
GAATATTCAGTAATGAGTTAATTATCTTGTTTGTAGAACACATATTCTAGCATCATTCCATT
Found at i:656035 original size:4 final size:4
Alignment explanation
Indices: 656026--656081 Score: 67
Period size: 4 Copynumber: 14.0 Consensus size: 4
656016 TACCCTTGTG
* * * * *
656026 TGTC TGTC TGTC TGTC CGTC CGTA TGTC TGTC TGTC CGTC CGTC TGTC
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC
656074 TGTC TGTC
1 TGTC TGTC
656082 CGTAACAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.02, C:0.30, G:0.25, T:0.43
Consensus pattern (4 bp):
TGTC
Found at i:656055 original size:20 final size:20
Alignment explanation
Indices: 656030--656084 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
656020 CTTGTGTGTC
656030 TGTCTGTCTGTCCGTCCGTA
1 TGTCTGTCTGTCCGTCCGTA
*
656050 TGTCTGTCTGTCCGTCCGTC
1 TGTCTGTCTGTCCGTCCGTA
656070 TGTCTGTCTGTCCGT
1 TGTCTGTCTGTCCGT
656085 AACAAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.02, C:0.31, G:0.25, T:0.42
Consensus pattern (20 bp):
TGTCTGTCTGTCCGTCCGTA
Found at i:656490 original size:167 final size:165
Alignment explanation
Indices: 656108--656726 Score: 947
Period size: 167 Copynumber: 3.8 Consensus size: 165
656098 GTCGCATTTA
*
656108 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTG-TATAGGCATGCTATA
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTA-AGGCATGCCATA
* * *
656172 TCGTGGGATATATTTTTGTACCAATCAAACGTCAACTTCCTGTTAAATGACGACTTCGTTTATTT
65 TCGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTT
* *
656237 TTTGCCAAAATTTTCAAACAAATTTCCGTCAAAGAAT
130 TTT-CCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* * *
656274 TCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTTAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTAAGGCATGCCATAT
* * *
656339 TGTGGGATATATTTTTGTATCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
656404 TTAACCAAAATTTTCAAACAAATTTTCGTCAAAGATT
131 TT--CCAAAATTTTCAAACAAATTTTCGTCAAAGATT
*
656441 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTTACACAGTATTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTAAGGCATGCCATAT
* * * *
656506 CGTGGGATATATTTTTGTATCAATCGGACGTCATCTTCCTGTTAAATGACAACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
656571 TT----AA----C---CAAATTTTCGTCAAAGATT
131 TTCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* *
656595 TCTAAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTAAGGCATGCCATAT
656660 CGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
656725 TT
131 TT
656727 NNNNNNNNNN
Statistics
Matches: 424, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
154 144 0.34
157 1 0.00
161 2 0.00
166 120 0.28
167 157 0.37
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (165 bp):
TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTAAGGCATGCCATAT
CGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATGACGACTTTGCTTATTTT
TTCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
Found at i:656702 original size:154 final size:154
Alignment explanation
Indices: 656422--656726 Score: 547
Period size: 154 Copynumber: 2.0 Consensus size: 154
656412 AATTTTCAAA
* *
656422 CAAATTTTCGTCAAAGATTTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTTACACAGTAT
1 CAAATTTTCGTCAAAGATTTCTAAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTAT
* * *
656487 TTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTATCAATCGGACGTCATCTTCCTGTTAAA
66 TTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAA
656552 TGACAACTTTGCTTATTTTTTAAC
131 TGACAACTTTGCTTATTTTTTAAC
*
656576 CAAATTTTCGTCAAAGATTTCTAAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGT
1 CAAATTTTCGTCAAAGATTTCTAAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTAT
656641 TTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAA
66 TTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAA
*
656706 TGACGACTTTGCTTATTTTTT
131 TGACAACTTTGCTTATTTTTT
656727 NNNNNNNNNN
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
154 144 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (154 bp):
CAAATTTTCGTCAAAGATTTCTAAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTAT
TTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAA
TGACAACTTTGCTTATTTTTTAAC
Found at i:657098 original size:164 final size:165
Alignment explanation
Indices: 656757--657100 Score: 525
Period size: 163 Copynumber: 2.1 Consensus size: 165
656747 NNNNNNNNNN
*
656757 TGCCATATTGTGGGATATATTTTTGTATCAATCAGACGTCAACTTCCTGTTAAATAATGACTTTG
1 TGCCATATTGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATAATGACTTTG
* * *
656822 TTTATTTTTTGCCAAAATTTTAAAACAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGGA
66 TTTATTTTTAGCCAAAATTTTAAAACAAATTTTCCTCAAAGATTTCTCAGCAGCTATTTATCGCA
* *
656887 GATGCTTTAAATTTTAACACAGTATTTTTAAGGCA
131 GATGCTTGAAATTTTAACACACTATTTTTAAGGCA
* * *
656922 TGCCAT-TTGTGGGATATATTTTTGTACCAATCGGACGTCATCTTCCTGTTAAATGA-GTACTTT
1 TGCCATATTGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATAATG-ACTTT
* * *
656985 GTTTA-TTTTAGGCAAAATTTTCAAAGAAATTTTCCTCAAAGATTTCTCAGCAGCTATTTATC-C
65 GTTTATTTTTAGCCAAAATTTTAAAACAAATTTTCCTCAAAGATTTCTCAGCAGCTATTTATCGC
*
657048 AGATGCTTGAAATTTTAACACACTATTTGTTTAGGCA
130 AGATGCTTGAAATTTTAACACACTATTT-TTAAGGCA
657085 TGCCATATTGTGGGAT
1 TGCCATATTGTGGGAT
657101 NNNNNNNNNN
Statistics
Matches: 163, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
162 26 0.16
163 66 0.40
164 65 0.40
165 6 0.04
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (165 bp):
TGCCATATTGTGGGATATATTTTTGTACCAATCAGACGTCAACTTCCTGTTAAATAATGACTTTG
TTTATTTTTAGCCAAAATTTTAAAACAAATTTTCCTCAAAGATTTCTCAGCAGCTATTTATCGCA
GATGCTTGAAATTTTAACACACTATTTTTAAGGCA
Found at i:670126 original size:16 final size:16
Alignment explanation
Indices: 670105--670141 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
670095 TAATGTAGTT
*
670105 GTTACTGGTTACAGTG
1 GTTACTGGTAACAGTG
*
670121 GTTACTGGTAACATTG
1 GTTACTGGTAACAGTG
670137 GTTAC
1 GTTAC
670142 AAAAAGGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.38
Consensus pattern (16 bp):
GTTACTGGTAACAGTG
Found at i:676016 original size:8 final size:8
Alignment explanation
Indices: 676002--676062 Score: 68
Period size: 8 Copynumber: 7.6 Consensus size: 8
675992 GAAATGCCGG
676002 GCGTCCGT
1 GCGTCCGT
*
676010 CCGTCCGT
1 GCGTCCGT
*
676018 GTGTCCGT
1 GCGTCCGT
* *
676026 GGGTCTGT
1 GCGTCCGT
676034 GCGTCCGT
1 GCGTCCGT
*
676042 GTGTCCGT
1 GCGTCCGT
676050 GCGTCCGT
1 GCGTCCGT
*
676058 CCGTC
1 GCGTC
676063 ACACTTTTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.00, C:0.34, G:0.36, T:0.30
Consensus pattern (8 bp):
GCGTCCGT
Found at i:676370 original size:172 final size:172
Alignment explanation
Indices: 676074--676695 Score: 1028
Period size: 172 Copynumber: 3.6 Consensus size: 172
676064 CACTTTTTTC
*
676074 TAAGCGTTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
1 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
* *
676139 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTATGGGACTT
66 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATACTTTTTGTTGGCGTTATGGGACTT
*
676204 TGACCGCAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
131 TGACCACAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
*
676246 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATATCA
1 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
676311 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATACTTTTTGTTGGCGTTATGGGACTT
66 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATACTTTTTGTTGGCGTTATGGGACTT
* *
676376 TGACCACAATCATGACTCCGTTTTATTCAAAAATTGACCTTG
131 TGACCACAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
* *
676418 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATCTATACCAAATATTTATACCA
1 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
* ** * * *
676483 CTATTACCTTGGTCAAGTTTGAAAATCAGCGGTAGTCGATATTTTTTATTGGCGTTATTGGACTT
66 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATACTTTTTGTTGGCGTTATGGGACTT
676548 TGACCACAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
131 TGACCACAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
* * *
676590 TAAGCGCTCTCATGCCTACAAATTTAGACAGATTTTCATTAAATTTATACCAAATGTTTACACCA
1 TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
* * ** * *
676655 CTAATAACTTGGTCAAGTTCCTAAATCAGCCTTGGTCGATA
66 CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATA
676696 GACTCGATAC
Statistics
Matches: 419, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
172 419 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (172 bp):
TAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATACCA
CTATTACCTTGGTCAAGTTCGAAAATCAGCATTAGTCGATACTTTTTGTTGGCGTTATGGGACTT
TGACCACAATAATGACTCCGTTTTATCCAAAAATTGACCTTG
Found at i:677055 original size:4 final size:4
Alignment explanation
Indices: 677040--677089 Score: 75
Period size: 4 Copynumber: 12.8 Consensus size: 4
677030 ATCACCCGTT
* *
677040 GTCC GT-C GTCC GTCC GTCC GTCC GTCC GTCC GTCT GTCT GTCC GTCC
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC
677087 GTC
1 GTC
677090 TGTAAACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 3 0.07
4 40 0.93
ACGTcount: A:0.00, C:0.44, G:0.26, T:0.30
Consensus pattern (4 bp):
GTCC
Found at i:677288 original size:11 final size:11
Alignment explanation
Indices: 677272--677296 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
677262 CAAGAACCAC
677272 TGCACCAGAAA
1 TGCACCAGAAA
677283 TGCACCAGAAA
1 TGCACCAGAAA
677294 TGC
1 TGC
677297 CAATATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.28, G:0.20, T:0.12
Consensus pattern (11 bp):
TGCACCAGAAA
Found at i:677522 original size:166 final size:166
Alignment explanation
Indices: 677316--677807 Score: 930
Period size: 166 Copynumber: 3.0 Consensus size: 166
677306 CACAAAAGCT
677316 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
1 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
* *
677381 AGTTTAACATAGAACTACATATGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
66 AGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
*
677446 AAATGCCAATATTTGCACAAAAGCTTGTATATATAG
131 AAATGCCAATATTTACACAAAAGCTTGTATATATAG
*
677482 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAAGCGGGGTTCAA
1 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
*
677547 AGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTTTCAAGAACCACTGCACCAG
66 AGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
677612 AAATGCCAATATTTACACAAAAGCTTGTATATATAG
131 AAATGCCAATATTTACACAAAAGCTTGTATATATAG
677648 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
1 TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
*
677713 ATTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
66 AGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
677778 AAATGCCAATATTTACACAAAAGCTTGTAT
131 AAATGCCAATATTTACACAAAAGCTTGTAT
677808 GTNNNNNNNN
Statistics
Matches: 318, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 318 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (166 bp):
TGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAA
AGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAG
AAATGCCAATATTTACACAAAAGCTTGTATATATAG
Found at i:681065 original size:30 final size:30
Alignment explanation
Indices: 681030--681088 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
681020 CCCTCCCCCA
681030 CCCCGCCATAGTGCCGACTATCACCCGGGC
1 CCCCGCCATAGTGCCGACTATCACCCGGGC
681060 CCCCGCCATAGTGCCGACTATCACCCGGG
1 CCCCGCCATAGTGCCGACTATCACCCGGG
681089 TGATACTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.17, C:0.46, G:0.24, T:0.14
Consensus pattern (30 bp):
CCCCGCCATAGTGCCGACTATCACCCGGGC
Found at i:700607 original size:3 final size:3
Alignment explanation
Indices: 700589--700635 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
700579 CCCCACCACC
* *
700589 ACA ACC ACA ACTA ACA ACA ACA ACA ACA A-A AGCA ACA ACA GCA ACA
1 ACA ACA ACA AC-A ACA ACA ACA ACA ACA ACA A-CA ACA ACA ACA ACA
700635 A
1 A
700636 TTCCTGAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.62, C:0.32, G:0.04, T:0.02
Consensus pattern (3 bp):
ACA
Found at i:703575 original size:34 final size:33
Alignment explanation
Indices: 703526--703663 Score: 118
Period size: 34 Copynumber: 4.1 Consensus size: 33
703516 TATAGTTTAT
*
703526 ACACAACTTATGATATCTAGCGTAATGTCTTGTG
1 ACAC-ACTTATGATATCTAGCATAATGTCTTGTG
* * *
703560 ACGCATCTTATGATATCT-GCCATAATGTCATGTT
1 ACACA-CTTATGATATCTAG-CATAATGTCTTGTG
* *
703594 ACACACTTTATGATATCTTA-CATGATGTCTTGTT
1 ACACAC-TTATGATATC-TAGCATAATGTCTTGTG
* * * *
703628 TCACAACCTATAATATCTAGTATAATGTCTTGTG
1 ACAC-ACTTATGATATCTAGCATAATGTCTTGTG
703662 AC
1 AC
703664 GCACCTTTTA
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
33 5 0.06
34 75 0.90
35 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (33 bp):
ACACACTTATGATATCTAGCATAATGTCTTGTG
Found at i:705018 original size:34 final size:34
Alignment explanation
Indices: 704975--705496 Score: 371
Period size: 34 Copynumber: 15.4 Consensus size: 34
704965 CGAGTAAACG
* *
704975 TTGTTACACACCTTATAATATCTAGTATGATGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * * **
705009 TTGTTACACACCTTGTGATACCTGGCATGGTGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * * *
705043 TTTTTACACAACTTATGATATCTGGTATAATGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * **
705077 TTGTGA-AGCACCTAATAAAATCTAATATAATGTC
1 TTGTTACA-CACCTTATAATATCTAGCATAATGTC
* * * *
705111 TTGTTACACACCTTGTAATATATCTGGTATGATGTC
1 TTGTTACACACCTTAT-A-ATATCTAGCATAATGTC
* * * *
705147 TTGTGACACACTTTATAATATCTAGTATAATGTA
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * *
705181 TTGTAACACACCTTATGATATCTAACATAGTGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* *
705215 TTGTTACACACCTTATAATATCTAACATAATATC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * * *
705249 CTGTAACGCACCTTATGATATCTAACATAATGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * * *
705283 TTGTAATACACCTCA-AGATATCTGGCATTATGTC
1 TTGTTACACACCTTATA-ATATCTAGCATAATGTC
* *
705317 TTGTTACGCACCTTA-AGATATCTGGCATTTAA--TC
1 TTGTTACACACCTTATA-ATATCTAGCA--TAATGTC
* * *
705351 TTGTTACACATCTTATAATATCTAACAAAATGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
*
705385 TTGTTACACACCTTATAATATCTAACAT-A--TC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* ** * **
705416 TTGCT--ACACCTTACGATATCTAACATAATACC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
* * * * * *
705448 CTGTAACGCACTTTATGATATCTAACATAATGTC
1 TTGTTACACACCTTATAATATCTAGCATAATGTC
705482 TTGTTACACACCTTA
1 TTGTTACACACCTTA
705497 CGTTATGTGG
Statistics
Matches: 387, Mismatches: 86, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
29 19 0.05
30 1 0.00
31 6 0.02
32 5 0.01
33 2 0.01
34 322 0.83
35 4 0.01
36 28 0.07
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (34 bp):
TTGTTACACACCTTATAATATCTAGCATAATGTC
Found at i:705148 original size:70 final size:70
Alignment explanation
Indices: 705060--705245 Score: 191
Period size: 70 Copynumber: 2.7 Consensus size: 70
705050 ACAACTTATG
* *
705060 ATATCTGGTATAATGTCTTGTGA-AGCACCTAATAAAATCTAATATAATGTCTTGTTACACACCT
1 ATATCTGGTATAATGTCTTGTGACA-CACCTAATAAAATCTAATATAATGTATTGTAACACACCT
705124 TGTAAT
65 TGTAAT
* * * * *
705130 ATATCTGGTATGATGTCTTGTGACACACTTTATAATATCTAGTATAATGTATTGTAACACACC-T
1 ATATCTGGTATAATGTCTTGTGACACACCTAATAAAATCTAATATAATGTATTGTAACACACCTT
705194 -T-AT
66 GTAAT
*** * * * * *
705197 GATATCTAACATAGTGTCTTGTTACACACCTTATAATATCTAACATAAT
1 -ATATCTGGTATAATGTCTTGTGACACACCTAATAAAATCTAATATAAT
705246 ATCCTGTAAC
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
67 2 0.02
68 40 0.41
69 1 0.01
70 54 0.55
71 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (70 bp):
ATATCTGGTATAATGTCTTGTGACACACCTAATAAAATCTAATATAATGTATTGTAACACACCTT
GTAAT
Found at i:709203 original size:2 final size:2
Alignment explanation
Indices: 709196--709253 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
709186 NNNNNNNNNN
709196 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
709238 TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC
709254 ATTGTAAAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:729311 original size:2 final size:2
Alignment explanation
Indices: 729304--729346 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
729294 TCTGTGCTAA
729304 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
729346 T
1 T
729347 GTGTTAACGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:742615 original size:110 final size:110
Alignment explanation
Indices: 742422--742754 Score: 630
Period size: 110 Copynumber: 3.0 Consensus size: 110
742412 ATAAATAGTG
** *
742422 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCGACGCGAAGC
1 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACAATTGTCAACCGACGCGAAGC
742487 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
66 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
*
742532 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACTATTGTCAACCGACGCGAAGC
1 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACAATTGTCAACCGACGCGAAGC
742597 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
66 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
742642 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACAATTGTCAACCGACGCGAAGC
1 CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACAATTGTCAACCGACGCGAAGC
742707 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
66 GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
742752 CCT
1 CCT
742755 CCCAAACAGG
Statistics
Matches: 219, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 219 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (110 bp):
CCTGTTTGGGAGGGTAACAGTTGAAATTGACACCCCGAGAAAACAATTGTCAACCGACGCGAAGC
GGAGGTTGACAATGGTTTTCGAGGGGTGTCGATTTCAACTGTTAT
Found at i:745000 original size:27 final size:27
Alignment explanation
Indices: 744962--745015 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
744952 TGTCTTGTTT
744962 ATCAAATCTATTCTTAACCTATAAAAG
1 ATCAAATCTATTCTTAACCTATAAAAG
744989 ATCAAATCTATTCTTAACCTATAAAAG
1 ATCAAATCTATTCTTAACCTATAAAAG
745016 TAAGGAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (27 bp):
ATCAAATCTATTCTTAACCTATAAAAG
Found at i:752894 original size:13 final size:14
Alignment explanation
Indices: 752869--752897 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
752859 CTTGGCCTCC
752869 TCTTTAGAATGATG
1 TCTTTAGAATGATG
752883 TCTTTA-AATGATG
1 TCTTTAGAATGATG
752896 TC
1 TC
752898 AGTCTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (14 bp):
TCTTTAGAATGATG
Found at i:756073 original size:379 final size:378
Alignment explanation
Indices: 755374--756131 Score: 1507
Period size: 379 Copynumber: 2.0 Consensus size: 378
755364 ACATTTGCAG
755374 AAAGACGAGTCTTCAGAGAGTCCGGGGAAACTAAAACCAAAACCCAAATTACGACAAAATGGTAG
1 AAAGACGAGTCTTCAGAGAGTCCGGGGAAACTAAAACCAAAACCCAAATTACGACAAAATGGTAG
755439 GTGAAAATAGAAAGTTAAGCATAACCTTAAAAAAATCTTGATACACGTTGAGTTATTTGTCATTC
66 GTGAAAATAGAAAGTTAAGCATAACCTTAAAAAAATCTTGATACACGTTGAGTTATTTGTCATTC
755504 ATGTTAGAAATGGTTTATTTTTAAAATTGCATTTTGTCATAAATCATAAAATTGTTACTATGAAT
131 ATGTTAGAAATGGTTTATTTTTAAAATTGCATTTTGTCATAAATCATAAAATTGTTACTATGAAT
755569 ACTATTTTAAGCATGGTCAAAACCAATATAATCATGTATCTCATGGTATTATTTTGTTTTACTTA
196 ACTATTTTAAGCATGGTCAAAACCAATATAATCATGTATCTCATGGTATTATTTTGTTTTACTTA
755634 AGGAGGATGTGCGGCCACCTTGTACATTTGAGGATAAGAATGTAAACATTTCTTGAACTGGATTG
261 AGGAGGATGTGCGGCCACCTTGTACATTTGAGGATAAGAATGTAAACATTTCTTGAACTGGATTG
755699 TTTCTGCCGGAAACTGTCCAAAAATATTGCCATCATATATAAAAGCAATAAAT
326 TTTCTGCCGGAAACTGTCCAAAAATATTGCCATCATATATAAAAGCAATAAAT
755752 NAAAGACGAGTCTTCAGAGAGTCCGGGGAAACTAAAACCAAAACCCAAATTACGACAAAATGGTA
1 -AAAGACGAGTCTTCAGAGAGTCCGGGGAAACTAAAACCAAAACCCAAATTACGACAAAATGGTA
755817 GGTGAAAATAGAAAGTTAAGCATAACCTTAAAAAAATCTTGATACACGTTGAGTTATTTGTCATT
65 GGTGAAAATAGAAAGTTAAGCATAACCTTAAAAAAATCTTGATACACGTTGAGTTATTTGTCATT
755882 CATGTTAGAAATGGTTTATTTTTAAAATTGCATTTTGTCATAAATCATAAAATTGTTACTATGAA
130 CATGTTAGAAATGGTTTATTTTTAAAATTGCATTTTGTCATAAATCATAAAATTGTTACTATGAA
755947 TACTATTTTAAGCATGGTCAAAACCAATATAATCATGTATCTCATGGTATTATTTTGTTTTACTT
195 TACTATTTTAAGCATGGTCAAAACCAATATAATCATGTATCTCATGGTATTATTTTGTTTTACTT
756012 AAGGAGGATGTGCGGCCACCTTGTACATTTGAGGATAAGAATGTAAACATTTCTTGAACTGGATT
260 AAGGAGGATGTGCGGCCACCTTGTACATTTGAGGATAAGAATGTAAACATTTCTTGAACTGGATT
756077 GTTTCTGCCGGAAACTGTCCAAAAATATTGCCATCATATATAAAAGCAATAAAT
325 GTTTCTGCCGGAAACTGTCCAAAAATATTGCCATCATATATAAAAGCAATAAAT
756131 A
1 A
756132 CGAAGTCCTA
Statistics
Matches: 379, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
378 1 0.00
379 378 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (378 bp):
AAAGACGAGTCTTCAGAGAGTCCGGGGAAACTAAAACCAAAACCCAAATTACGACAAAATGGTAG
GTGAAAATAGAAAGTTAAGCATAACCTTAAAAAAATCTTGATACACGTTGAGTTATTTGTCATTC
ATGTTAGAAATGGTTTATTTTTAAAATTGCATTTTGTCATAAATCATAAAATTGTTACTATGAAT
ACTATTTTAAGCATGGTCAAAACCAATATAATCATGTATCTCATGGTATTATTTTGTTTTACTTA
AGGAGGATGTGCGGCCACCTTGTACATTTGAGGATAAGAATGTAAACATTTCTTGAACTGGATTG
TTTCTGCCGGAAACTGTCCAAAAATATTGCCATCATATATAAAAGCAATAAAT
Found at i:757830 original size:390 final size:389
Alignment explanation
Indices: 757111--757889 Score: 1540
Period size: 390 Copynumber: 2.0 Consensus size: 389
757101 TTATATTGTA
757111 GATTACAATCCATTGATGGGTGGAGGAGGGCCGGGATACAGGCCGGCCAGGCGAACGGGAGGAGG
1 GATTACAATCCATTGATGGGTGGAGGAGGGCCGGGATACAGGCCGGCCAGGCGAACGGGAGGAGG
757176 ATGAGGTTAACTTGTGTATCCGTGGAAAAACCACGTGACAAACAGAGGTCACGTGGTGAGGTACC
66 ATGAGGTTAACTTGTGTATCCGTGGAAAAACCACGTGACAAACAGAGGTCACGTGGTGAGGTACC
757241 CGGATACAATTAGCTTGACATGTTGTCCCTTGATTTACTTCCCTTTTCTCTGAAGAATTTACTAC
131 CGGATACAATTAGCTTGACATGTTGTCCCTTGATTTACTTCCCTTTTCTCTGAAGAATTTACTAC
757306 TTTTGAATGCGGAATAGGATAGCGAAATTGCTACAATTATGCAAATACGGCTCAAGAGTTAGAAA
196 TTTTGAATGCGGAATAGGATAGCGAAATTGCTACAATTATGCAAATACGGCTCAAGAGTTAGAAA
757371 TATTTGTGTGATAAGGGATTGTTGGAACATTCGAACGTAAGAGATTATCGGTTGCTTTCGAGACT
261 TATTTGTGTGATAAGGGATTGTTGGAACATTCGAACGTAAGAGATTATCGGTTGCTTTCGAGACT
757436 TCTCAGTGAGGTGTAAATTAGCTACAGGATAACTGTGGATTTTTACGGTGTTAAAAGAGCACGG
326 TCTCAGTGAGGTGTAAATTAGCTACAGGATAACTGTGGATTTTTACGGTGTTAAAAGAGCACGG
757500 NGATTACAATCCATTGATGGGTGGAGGAGGGCCGGGATACAGGCCGGCCAGGCGAACGGGAGGAG
1 -GATTACAATCCATTGATGGGTGGAGGAGGGCCGGGATACAGGCCGGCCAGGCGAACGGGAGGAG
757565 GATGAGGTTAACTTGTGTATCCGTGGAAAAACCACGTGACAAACAGAGGTCACGTGGTGAGGTAC
65 GATGAGGTTAACTTGTGTATCCGTGGAAAAACCACGTGACAAACAGAGGTCACGTGGTGAGGTAC
757630 CCGGATACAATTAGCTTGACATGTTGTCCCTTGATTTACTTCCCTTTTCTCTGAAGAATTTACTA
130 CCGGATACAATTAGCTTGACATGTTGTCCCTTGATTTACTTCCCTTTTCTCTGAAGAATTTACTA
*
757695 CTTTTGAATGCGGAATAGGATAGCGAAATTGCTACAATTATGCAAATGCGGCTCAAGAGTTAGAA
195 CTTTTGAATGCGGAATAGGATAGCGAAATTGCTACAATTATGCAAATACGGCTCAAGAGTTAGAA
757760 ATATTTGTGTGATAAGGGATTGTTGGAACATTCGAACGTAAGAGATTATCGGTTGCTTTCGAGAC
260 ATATTTGTGTGATAAGGGATTGTTGGAACATTCGAACGTAAGAGATTATCGGTTGCTTTCGAGAC
757825 TTCTCAGTGAGGTGTAAATTAGCTACAGGATAACTGTGGATTTTTACGGTGTTAAAAGAGCACGG
325 TTCTCAGTGAGGTGTAAATTAGCTACAGGATAACTGTGGATTTTTACGGTGTTAAAAGAGCACGG
757890 ATACATTAAA
Statistics
Matches: 388, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
390 388 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (389 bp):
GATTACAATCCATTGATGGGTGGAGGAGGGCCGGGATACAGGCCGGCCAGGCGAACGGGAGGAGG
ATGAGGTTAACTTGTGTATCCGTGGAAAAACCACGTGACAAACAGAGGTCACGTGGTGAGGTACC
CGGATACAATTAGCTTGACATGTTGTCCCTTGATTTACTTCCCTTTTCTCTGAAGAATTTACTAC
TTTTGAATGCGGAATAGGATAGCGAAATTGCTACAATTATGCAAATACGGCTCAAGAGTTAGAAA
TATTTGTGTGATAAGGGATTGTTGGAACATTCGAACGTAAGAGATTATCGGTTGCTTTCGAGACT
TCTCAGTGAGGTGTAAATTAGCTACAGGATAACTGTGGATTTTTACGGTGTTAAAAGAGCACGG
Found at i:763434 original size:12 final size:12
Alignment explanation
Indices: 763417--763441 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
763407 AACCAAGTTC
763417 ACATCCCGGTAA
1 ACATCCCGGTAA
763429 ACATCCCGGTAA
1 ACATCCCGGTAA
763441 A
1 A
763442 AAAGTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16
Consensus pattern (12 bp):
ACATCCCGGTAA
Found at i:778570 original size:2 final size:2
Alignment explanation
Indices: 778495--778559 Score: 96
Period size: 2 Copynumber: 33.0 Consensus size: 2
778485 AATAACTTAT
* * *
778495 TC TC TC TT TC TC TC TC TC TC -C CC CC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
778536 TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC
778560 CAGCCCTCTC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:782903 original size:380 final size:379
Alignment explanation
Indices: 782202--782963 Score: 1506
Period size: 380 Copynumber: 2.0 Consensus size: 379
782192 AGTGGAGGTT
782202 TGGCTACAGACCGGAACACAATGGATACCGTCAGCATACCGGATGTGGATATTTACGATGCTAAG
1 TGGCTACAGACCGGAACACAATGGATACCGTCAGCATACCGGATGTGGATATTTACGATGCTAAG
782267 AATGACCGATGGAAGCTGAGTAACTACATGCCTCGGGATGTTACATATCACAGCACAGCATCGTT
66 AATGACCGATGGAAGCTGAGTAACTACATGCCTCGGGATGTTACATATCACAGCACAGCATCGTT
782332 TGCCTCAGGTTGGTAACCCTGATACCCTCCAATGGGCTTTAATTAATCAATTAATTCTTGAAGAA
131 TGCCTCAGGTTGGTAACCCTGATACCCTCCAATGGGCTTTAATTAATCAATTAATTCTTGAAGAA
782397 AAAAATACCGGTACATTTAGTTCATAGGCTTATGTTTACACAAAACGATGTAAAACAATTTTGCA
196 AAAAATACCGGTACATTTAGTTCATAGGCTTATGTTTACACAAAACGATGTAAAACAATTTTGCA
782462 TTGACCTTCTTTTATATACATATGTATATACATGTAGATAGCAGTGAACGGTTGATGTAATTTCC
261 TTGACCTTCTTTTATATACATATGTATATACATGTAGATAGCAGTGAACGGTTGATGTAATTTCC
782527 ATGTTTCTCTTTGAAAGGTTCGATGCTGTATTTGATTGGTGGATCACCTGACAG
326 ATGTTTCTCTTTGAAAGGTTCGATGCTGTATTTGATTGGTGGATCACCTGACAG
782581 NTGGCTACAGACCGGAACACAATGGATACCGTCAGCATACCGGATGTGGATATTTACGATGCTAA
1 -TGGCTACAGACCGGAACACAATGGATACCGTCAGCATACCGGATGTGGATATTTACGATGCTAA
*
782646 GAATGACCGATGGAGGCTGAGTAACTACATGCCTCGGGATGTTACATATCACAGCACAGCATCGT
65 GAATGACCGATGGAAGCTGAGTAACTACATGCCTCGGGATGTTACATATCACAGCACAGCATCGT
782711 TTGCCTCAGGTTGGTAACCCTGATACCCTCCAATGGGCTTTAATTAATCAATTAATTCTTGAAGA
130 TTGCCTCAGGTTGGTAACCCTGATACCCTCCAATGGGCTTTAATTAATCAATTAATTCTTGAAGA
782776 AAAAAATACCGGTACATTTAGTTCATAGGCTTATGTTTACACAAAACGATGTAAAACAATTTTGC
195 AAAAAATACCGGTACATTTAGTTCATAGGCTTATGTTTACACAAAACGATGTAAAACAATTTTGC
782841 ATTGACCTTCTTTTATATACATATGTATATACATGTAGATAGCAGTGAACGGTTGATGTAATTTC
260 ATTGACCTTCTTTTATATACATATGTATATACATGTAGATAGCAGTGAACGGTTGATGTAATTTC
782906 CATGTTTCTCTTTGAAAGGTTCGATGCTGTATTTGATTGGTGGATCACCTGACAG
325 CATGTTTCTCTTTGAAAGGTTCGATGCTGTATTTGATTGGTGGATCACCTGACAG
782961 TGG
1 TGG
782964 TCAATCAGTA
Statistics
Matches: 381, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
379 3 0.01
380 378 0.99
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (379 bp):
TGGCTACAGACCGGAACACAATGGATACCGTCAGCATACCGGATGTGGATATTTACGATGCTAAG
AATGACCGATGGAAGCTGAGTAACTACATGCCTCGGGATGTTACATATCACAGCACAGCATCGTT
TGCCTCAGGTTGGTAACCCTGATACCCTCCAATGGGCTTTAATTAATCAATTAATTCTTGAAGAA
AAAAATACCGGTACATTTAGTTCATAGGCTTATGTTTACACAAAACGATGTAAAACAATTTTGCA
TTGACCTTCTTTTATATACATATGTATATACATGTAGATAGCAGTGAACGGTTGATGTAATTTCC
ATGTTTCTCTTTGAAAGGTTCGATGCTGTATTTGATTGGTGGATCACCTGACAG
Found at i:786669 original size:37 final size:37
Alignment explanation
Indices: 786620--786691 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
786610 AATAAAATAT
786620 ACTACTAGTCATGTTGTATATTTTATTTGATAAAAAG
1 ACTACTAGTCATGTTGTATATTTTATTTGATAAAAAG
786657 ACTACTAGTCATGTTGTATATTTTATTTGATAAAA
1 ACTACTAGTCATGTTGTATATTTTATTTGATAAAA
786692 TGAAATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.44
Consensus pattern (37 bp):
ACTACTAGTCATGTTGTATATTTTATTTGATAAAAAG
Found at i:787386 original size:4 final size:4
Alignment explanation
Indices: 787377--787403 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
787367 AATAAATCAT
787377 TTAC TTAC TTAC TTAC TTAC TTAC TTA
1 TTAC TTAC TTAC TTAC TTAC TTAC TTA
787404 GTATTTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAC
Found at i:792615 original size:14 final size:14
Alignment explanation
Indices: 792596--792622 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
792586 TATCCTTTTA
792596 TAACATTGAGATGG
1 TAACATTGAGATGG
792610 TAACATTGAGATG
1 TAACATTGAGATG
792623 ACGTTGTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (14 bp):
TAACATTGAGATGG
Found at i:815288 original size:18 final size:18
Alignment explanation
Indices: 815261--815296 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
815251 GACACACATG
815261 CCTGTAATAGTGTAAAAA
1 CCTGTAATAGTGTAAAAA
*
815279 CCTGTTATAGTGTAAAAA
1 CCTGTAATAGTGTAAAAA
815297 GCTATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.31
Consensus pattern (18 bp):
CCTGTAATAGTGTAAAAA
Found at i:824317 original size:14 final size:14
Alignment explanation
Indices: 824298--824325 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
824288 TCTTTACATC
824298 TTAACGTTTTATTT
1 TTAACGTTTTATTT
824312 TTAACGTTTTATTT
1 TTAACGTTTTATTT
824326 ATCTTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
TTAACGTTTTATTT
Found at i:824807 original size:268 final size:267
Alignment explanation
Indices: 824330--824866 Score: 1011
Period size: 268 Copynumber: 2.0 Consensus size: 267
824320 TTATTTATCT
824330 TCATTTATACTCTTACATGTAAGTTCTGGTTATATAACTTGTATACACTTGTCATGGCTGCGGAG
1 TCATTTATACTCTTACATGTAAGTTCTGGTTATATAACTTGTATACACTTGTCATGGCTGCGGAG
**
824395 GAAGTCCAGCTGATGTATCCTATCTCGTGTTTATATCTTAGATAAAGAATCAAGGGATTAGATGG
66 GAAGTCCAGCTGATGTATCCTATCTCGTGGATATATCTTAGATAAAGAATCAAGGGATTAGATGG
824460 TTCATTAAAACTGTCTACTATTGTATTTAAGAATTCGAACTCGTAAAAAACTCCTGCATATTGCA
131 TTCATTAAAACTGTCTACTATTGTATTTAAGAATTCGAACTCGTAAAAAACTCCTGCATATTGCA
*
824525 CTTCTGCTATGGAATTCTTTACCTATGGTGTTCCGATGGGGCCACTTCGACCTTCGCACTTTCGC
196 CTTCTGCAATGGAATTCTTTACCTATGGTGTTCCGATGGGGCCACTTCGACCTTCGCACTTTCGC
824590 CTTTAGG
261 CTTTAGG
824597 NTCATTTATACTCTTACATGTAAGTTCTGGTTATATAACTTGTATACACTTGTCATGGCTGCGGA
1 -TCATTTATACTCTTACATGTAAGTTCTGGTTATATAACTTGTATACACTTGTCATGGCTGCGGA
*
824662 TGAAGTCCAGCTGATGTATCCTATCTCGTGGATATATCTTAGATAAAGAATCAAGGGATTAGATG
65 GGAAGTCCAGCTGATGTATCCTATCTCGTGGATATATCTTAGATAAAGAATCAAGGGATTAGATG
* *
824727 GTTCATTAAAACTGTCTTCTATTTTATTTAAGAATTCGAACTCGTAAAAAACTCCTGCATATTGC
130 GTTCATTAAAACTGTCTACTATTGTATTTAAGAATTCGAACTCGTAAAAAACTCCTGCATATTGC
824792 ACTTCTGCAATGGAATTCTTTACCTATGGTGTTCCGATGGGGCCACTTCGACCTTCGCACTTTCG
195 ACTTCTGCAATGGAATTCTTTACCTATGGTGTTCCGATGGGGCCACTTCGACCTTCGCACTTTCG
824857 CCTTTAGG
260 CCTTTAGG
824865 TC
1 TC
824867 GAAGATGCGA
Statistics
Matches: 263, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
267 2 0.01
268 261 0.99
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (267 bp):
TCATTTATACTCTTACATGTAAGTTCTGGTTATATAACTTGTATACACTTGTCATGGCTGCGGAG
GAAGTCCAGCTGATGTATCCTATCTCGTGGATATATCTTAGATAAAGAATCAAGGGATTAGATGG
TTCATTAAAACTGTCTACTATTGTATTTAAGAATTCGAACTCGTAAAAAACTCCTGCATATTGCA
CTTCTGCAATGGAATTCTTTACCTATGGTGTTCCGATGGGGCCACTTCGACCTTCGCACTTTCGC
CTTTAGG
Found at i:824891 original size:8 final size:7
Alignment explanation
Indices: 824866--824965 Score: 73
Period size: 8 Copynumber: 13.7 Consensus size: 7
824856 GCCTTTAGGT
824866 CGAAGATG
1 CGAAG-TG
824874 CGAGAGTG
1 CGA-AGTG
824882 CGAAGTTG
1 CGAAG-TG
824890 CGAAG-G
1 CGAAGTG
824896 CGAAAGTG
1 CG-AAGTG
824904 CGAAGATG
1 CGAAG-TG
*
824912 CGACG-G
1 CGAAGTG
*
824918 CGAAGCG
1 CGAAGTG
824925 CGAAGATG
1 CGAAG-TG
*
824933 CGATG-G
1 CGAAGTG
824939 CGAAAGTG
1 CG-AAGTG
824947 CGAAGGTG
1 CGAA-GTG
824955 CGAAG-G
1 CGAAGTG
824961 CGAAG
1 CGAAG
824966 GAGCGATACT
Statistics
Matches: 77, Mismatches: 5, Indels: 22
0.74 0.05 0.21
Matches are distributed among these distances:
6 17 0.22
7 19 0.25
8 39 0.51
9 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.43, T:0.10
Consensus pattern (7 bp):
CGAAGTG
Found at i:824905 original size:14 final size:13
Alignment explanation
Indices: 824866--824966 Score: 62
Period size: 14 Copynumber: 7.0 Consensus size: 13
824856 GCCTTTAGGT
824866 CGAAGATGCGAGAGTG
1 CGAAG-TGCGA-AG-G
824882 CGAAGTTGCGAAGG
1 CGAAG-TGCGAAGG
824896 CGAAAGTGCGAAGATG
1 CG-AAGTGCGAAG--G
*
824912 CGACG-GCGAAGCG
1 CGAAGTGCGAAG-G
*
824925 CGAAGATGCGATGG
1 CGAAG-TGCGAAGG
824939 CGAAAGTGCGAAGGTG
1 CG-AAGTGCGAA-G-G
824955 CGAAG-GCGAAGG
1 CGAAGTGCGAAGG
824967 AGCGATACTA
Statistics
Matches: 71, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
12 1 0.01
13 6 0.08
14 29 0.41
15 19 0.27
16 16 0.23
ACGTcount: A:0.31, C:0.16, G:0.44, T:0.10
Consensus pattern (13 bp):
CGAAGTGCGAAGG
Found at i:824942 original size:43 final size:43
Alignment explanation
Indices: 824881--824965 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
824871 ATGCGAGAGT
* *
824881 GCGAAGTTGCGAAGGCGAAAGTGCGAAGATGCGACGGCGAAGC
1 GCGAAGATGCGAAGGCGAAAGTGCGAAGATGCGAAGGCGAAGC
* *
824924 GCGAAGATGCGATGGCGAAAGTGCGAAGGTGCGAAGGCGAAG
1 GCGAAGATGCGAAGGCGAAAGTGCGAAGATGCGAAGGCGAAG
824966 GAGCGATACT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.31, C:0.16, G:0.44, T:0.09
Consensus pattern (43 bp):
GCGAAGATGCGAAGGCGAAAGTGCGAAGATGCGAAGGCGAAGC
Found at i:824971 original size:22 final size:22
Alignment explanation
Indices: 824873--824964 Score: 123
Period size: 22 Copynumber: 4.2 Consensus size: 22
824863 GGTCGAAGAT
* *
824873 GCGAGAGTGCGAAGTTGCGAAG
1 GCGAAAGTGCGAAGATGCGAAG
*
824895 GCGAAAGTGCGAAGATGCGACG
1 GCGAAAGTGCGAAGATGCGAAG
* *
824917 GCG-AAGCGCGAAGATGCGATG
1 GCGAAAGTGCGAAGATGCGAAG
*
824938 GCGAAAGTGCGAAGGTGCGAAG
1 GCGAAAGTGCGAAGATGCGAAG
824960 GCGAA
1 GCGAA
824965 GGAGCGATAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
21 19 0.31
22 42 0.69
ACGTcount: A:0.30, C:0.16, G:0.43, T:0.10
Consensus pattern (22 bp):
GCGAAAGTGCGAAGATGCGAAG
Found at i:825728 original size:22 final size:22
Alignment explanation
Indices: 825703--825764 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
825693 TTATAAAAAG
*
825703 GCGAAGGCGAAATTGCGAAGAT
1 GCGAAGGCGAAAGTGCGAAGAT
* *
825725 GCGAAGGCGAGAGTGCGAAGTT
1 GCGAAGGCGAAAGTGCGAAGAT
* *
825747 GCGATGGCGAAGGTGCGA
1 GCGAAGGCGAAAGTGCGA
825765 TAGTAGTATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.44, T:0.13
Consensus pattern (22 bp):
GCGAAGGCGAAAGTGCGAAGAT
Found at i:825790 original size:6 final size:7
Alignment explanation
Indices: 825779--825881 Score: 52
Period size: 8 Copynumber: 14.1 Consensus size: 7
825769 AGTATCGCTT
825779 CTTCGC-
1 CTTCGCA
825785 CTTCGCA
1 CTTCGCA
*
825792 TCTTCGCG
1 -CTTCGCA
825800 CTTCGC-
1 CTTCGCA
*
825806 CGTCGCA
1 CTTCGCA
*
825813 TCTTCGAA
1 -CTTCGCA
*
825821 CTTTCGCTC
1 C-TTCGC-A
825830 CTTCGC-
1 CTTCGCA
*
825836 CGTCGCA
1 CTTCGCA
825843 CCTTCGCA
1 -CTTCGCA
825851 CTTTCGC-
1 C-TTCGCA
*
825858 CTTTGCAA
1 CTTCGC-A
825866 CTTCGCA
1 CTTCGCA
825873 CTCTCGCA
1 CT-TCGCA
825881 C
1 C
825882 CTCGACCTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
6 20 0.27
7 12 0.16
8 42 0.56
9 1 0.01
ACGTcount: A:0.10, C:0.43, G:0.17, T:0.31
Consensus pattern (7 bp):
CTTCGCA
Found at i:825795 original size:14 final size:15
Alignment explanation
Indices: 825773--825805 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
825763 GATAGTAGTA
*
825773 TCGCTTCTTCGC-CT
1 TCGCATCTTCGCGCT
825787 TCGCATCTTCGCGCT
1 TCGCATCTTCGCGCT
825802 TCGC
1 TCGC
825806 CGTCGCATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.03, C:0.42, G:0.18, T:0.36
Consensus pattern (15 bp):
TCGCATCTTCGCGCT
Found at i:825805 original size:21 final size:21
Alignment explanation
Indices: 825779--825818 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
825769 AGTATCGCTT
*
825779 CTTCGCCTTCGCATCTTCGCG
1 CTTCGCCGTCGCATCTTCGCG
825800 CTTCGCCGTCGCATCTTCG
1 CTTCGCCGTCGCATCTTCG
825819 AACTTTCGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.42, G:0.20, T:0.33
Consensus pattern (21 bp):
CTTCGCCGTCGCATCTTCGCG
Found at i:825836 original size:30 final size:30
Alignment explanation
Indices: 825800--825857 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
825790 CATCTTCGCG
*
825800 CTTCGCCGTCGCATCTTCGAACTTTCGCTC
1 CTTCGCCGTCGCACCTTCGAACTTTCGCTC
*
825830 CTTCGCCGTCGCACCTTCGCACTTTCGC
1 CTTCGCCGTCGCACCTTCGAACTTTCGC
825858 CTTTGCAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.09, C:0.43, G:0.17, T:0.31
Consensus pattern (30 bp):
CTTCGCCGTCGCACCTTCGAACTTTCGCTC
Found at i:826930 original size:2 final size:2
Alignment explanation
Indices: 826923--826965 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
826913 TAAGTAACAA
*
826923 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
826965 T
1 T
826966 GTATCAACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:834651 original size:53 final size:52
Alignment explanation
Indices: 834583--834763 Score: 308
Period size: 53 Copynumber: 3.4 Consensus size: 52
834573 ACAATCATTA
*
834583 AATAAATAACCAAAACTGTTGATAAACAATTGAATAGCATAATGCATTCTTT
1 AATAAATAAACAAAACTGTTGATAAACAATTGAATAGCATAATGCATTCTTT
*
834635 AGATAAATAAACAAAACTGTTGATAATCAATTGAATAGCATAATGCATTCTTT
1 A-ATAAATAAACAAAACTGTTGATAAACAATTGAATAGCATAATGCATTCTTT
*
834688 AAATAAATAAACAAAGCTGTTGATAAACAATTGAATAGCATAATGCATTCTTTT
1 -AATAAATAAACAAAACTGTTGATAAACAATTGAATAGCATAATGCATTC-TTT
834742 AATAAATAAACAAAACTGTTGA
1 AATAAATAAACAAAACTGTTGA
834764 AAAAACCACG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
52 1 0.01
53 116 0.96
54 4 0.03
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (52 bp):
AATAAATAAACAAAACTGTTGATAAACAATTGAATAGCATAATGCATTCTTT
Found at i:837532 original size:18 final size:17
Alignment explanation
Indices: 837501--837534 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
837491 GTTCGAGTCT
*
837501 CTTTTAAAACAAATTTC
1 CTTTTAAAAAAAATTTC
837518 CTTTCTAAAAAAAATTT
1 CTTT-TAAAAAAAATTT
837535 TAAACGCGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (17 bp):
CTTTTAAAAAAAATTTC
Found at i:838402 original size:97 final size:97
Alignment explanation
Indices: 838288--838475 Score: 322
Period size: 97 Copynumber: 1.9 Consensus size: 97
838278 GAGGGTTTCT
* *
838288 CTCATTTTTCTTTAATTTAAGTGATAAAGAATAATTTTGTATTTGTTGAATATATTTATTTGTAG
1 CTCATTTTTCTTCAATTTAAGTGATAAAGAATAATTTTGTATTTATTGAATATATTTATTTGTAG
* *
838353 ATTTATTTATAGATTAGTTTATTTATGATAAA
66 ATTTATTCATACATTAGTTTATTTATGATAAA
* *
838385 CTCATTTTTCTTCAATTTAAGTGATAAAGAATAATTTTTTATTTATTGAATCTATTTATTTGTAG
1 CTCATTTTTCTTCAATTTAAGTGATAAAGAATAATTTTGTATTTATTGAATATATTTATTTGTAG
838450 ATTTATTCATACATTAGTTTATTTAT
66 ATTTATTCATACATTAGTTTATTTAT
838476 TCCTTTGTAT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 85 1.00
ACGTcount: A:0.32, C:0.05, G:0.10, T:0.53
Consensus pattern (97 bp):
CTCATTTTTCTTCAATTTAAGTGATAAAGAATAATTTTGTATTTATTGAATATATTTATTTGTAG
ATTTATTCATACATTAGTTTATTTATGATAAA
Found at i:839629 original size:45 final size:45
Alignment explanation
Indices: 839563--839785 Score: 401
Period size: 45 Copynumber: 5.0 Consensus size: 45
839553 CATCAAAAAT
*
839563 ATACCCAAAATGCCAACCAAATGTAAGCTCATTTTTCTATTGGTA
1 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
*
839608 ATACCCAAAATGCCAATCAAATGTAAGCTAATTTTTCTATTGGTA
1 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
839653 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
1 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
* *
839698 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTGTTTGTA
1 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
*
839743 ATACCCAAAATGCCAACCAAATGTAAGCTTATTTTTCTATTGG
1 ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGG
839786 CAATGTTTTT
Statistics
Matches: 170, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 170 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (45 bp):
ATACCCAAAATGCCAACCAAATGTAAGCTAATTTTTCTATTGGTA
Found at i:840276 original size:110 final size:111
Alignment explanation
Indices: 840136--840568 Score: 535
Period size: 107 Copynumber: 4.0 Consensus size: 111
840126 TTTATCACAC
* * * * *
840136 ATGCTATCATTGTTCCTTAAATATTAACTTACTTTTAAG-AAAAAATGGTTGTTTTTGAAATTCT
1 ATGCTATCATTGTTACTTAAATATGAACTTACTTTTAAGAAAAAAATGATTGTTTTTAAAATTCA
* * * * *
840200 ATCAAGTTCAGAAGACGTTAAGATTATATTTATGGAATACTCAAAT
66 ATCAAATTCAGAGGACGTTAAGTTTATGTTTAGGGAATACTCAAAT
* * ** * * *
840246 ATGCTATTATTGTTCCTTAAATATGAACTTACTTCGAAGAAAAAAAAGATTGTCTATAAAATTCA
1 ATGCTATCATTGTTACTTAAATATGAACTTACTTTTAAGAAAAAAATGATTGTTTTTAAAATTCA
* * *
840311 ATCAAATTCAGAGGGA-TTTAAGTTTAGGTTTAGGAAATACTCAAAT
66 ATCAAATTCAGA-GGACGTTAAGTTTATGTTTAGGGAATACTCAAAT
* *
840357 ATGCTAT-ATTGTTACTT-AATATGAACTTACTTTTAAG--AAAAATTATTGTTTTTAAAATTTA
1 ATGCTATCATTGTTACTTAAATATGAACTTACTTTTAAGAAAAAAATGATTGTTTTTAAAATTCA
* *
840418 ATAAAATTCAGAGGGCGTTAAGTTTATGTTTAGGGAATACTCAAAT
66 ATCAAATTCAGAGGACGTTAAGTTTATGTTTAGGGAATACTCAAAT
* *
840464 ATGCTATCATTGTTACTTAAATATAAACTTACTTTTAAGAAAAAAATG--T-TTTTT-AATTTCA
1 ATGCTATCATTGTTACTTAAATATGAACTTACTTTTAAGAAAAAAATGATTGTTTTTAAAATTCA
* *
840525 ATCAAATTCAGAGGGCGTTAAGTTTATGTTTAGGGAATATTCAA
66 ATCAAATTCAGAGGACGTTAAGTTTATGTTTAGGGAATACTCAA
840569 GTCTGAGAGC
Statistics
Matches: 279, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
106 2 0.01
107 111 0.40
108 15 0.05
109 38 0.14
110 44 0.16
111 67 0.24
112 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (111 bp):
ATGCTATCATTGTTACTTAAATATGAACTTACTTTTAAGAAAAAAATGATTGTTTTTAAAATTCA
ATCAAATTCAGAGGACGTTAAGTTTATGTTTAGGGAATACTCAAAT
Found at i:841280 original size:36 final size:37
Alignment explanation
Indices: 841212--841285 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 37
841202 GTCCATGTAA
841212 ATTACATGTATTTAGAAAAAAACCTGCCTATTGGAAG
1 ATTACATGTATTTAGAAAAAAACCTGCCTATTGGAAG
** *
841249 ATTACATGTATTTAG-AAAAAGGCTGCTTATTGGAAG
1 ATTACATGTATTTAGAAAAAAACCTGCCTATTGGAAG
841285 A
1 A
841286 CAACAGTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 19 0.56
37 15 0.44
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (37 bp):
ATTACATGTATTTAGAAAAAAACCTGCCTATTGGAAG
Found at i:842732 original size:2 final size:2
Alignment explanation
Indices: 842725--842770 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
842715 AACACTTTAG
842725 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
842767 TC TC
1 TC TC
842771 AAAACACAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:843913 original size:4 final size:4
Alignment explanation
Indices: 843904--843930 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
843894 GCCAAATTAC
843904 TTTG TTTG TTTG TTTG TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTT
843931 ATAGATGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (4 bp):
TTTG
Found at i:845263 original size:18 final size:19
Alignment explanation
Indices: 845217--845268 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
845207 GTCTGAATCA
*
845217 AATTCCTAAAGGAAATACC
1 AATTCCTATAGGAAATACC
* *
845236 ATTCTCCTATAGGAAATA-T
1 AAT-TCCTATAGGAAATACC
845255 AATTCCTATAGGAA
1 AATTCCTATAGGAA
845269 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 11 0.39
19 4 0.14
20 13 0.46
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (19 bp):
AATTCCTATAGGAAATACC
Found at i:859821 original size:2 final size:2
Alignment explanation
Indices: 859814--859859 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
859804 AGAGGACTCC
859814 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
859856 CT CT
1 CT CT
859860 GTGAGGGAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:864094 original size:19 final size:20
Alignment explanation
Indices: 864048--864096 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
864038 AAAGCTTCCA
* * *
864048 TTGTTTGTTTCTTTTTTGGCT
1 TTGTTT-TTGCTTTTTGGGAT
864069 TTGTTTTTGCTTTTTGGGAT
1 TTGTTTTTGCTTTTTGGGAT
864089 TT-TTTTTG
1 TTGTTTTTG
864097 TAGGGGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 6 0.24
20 13 0.52
21 6 0.24
ACGTcount: A:0.02, C:0.06, G:0.20, T:0.71
Consensus pattern (20 bp):
TTGTTTTTGCTTTTTGGGAT
Found at i:867860 original size:26 final size:25
Alignment explanation
Indices: 867820--867870 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
867810 TTATTTTTTA
*
867820 CAATCCTATCCTATCGTATCGTGTAT
1 CAATCCTATCCTATCGT-GCGTGTAT
*
867846 CAATCCTATCGTATCGTGCGTGTAT
1 CAATCCTATCCTATCGTGCGTGTAT
867871 ACTGTTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (25 bp):
CAATCCTATCCTATCGTGCGTGTAT
Found at i:867881 original size:21 final size:21
Alignment explanation
Indices: 867857--867917 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
867847 AATCCTATCG
*
867857 TATCGTGCGTGT-ATACTGTTC
1 TATCGTGCGT-TAATACTATTC
** *
867878 TATCAAGCGTTAATCCTATTC
1 TATCGTGCGTTAATACTATTC
*
867899 TATCGTGCGTTAATCCTAT
1 TATCGTGCGTTAATACTAT
867918 CAGGTTTATC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (21 bp):
TATCGTGCGTTAATACTATTC
Found at i:869028 original size:42 final size:42
Alignment explanation
Indices: 868914--869030 Score: 180
Period size: 42 Copynumber: 2.8 Consensus size: 42
868904 TTATCCTTTC
* *
868914 CTATCGTGTATCAATCCTATCCTTTCGTGCATGTATACTGTT
1 CTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTGTT
*
868956 CTATCGTGCGTCAATCCTATCCTTTCGTGCGTGTATACTGTT
1 CTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTGTT
* * *
868998 CTATCGTGTGTGAATTCTATCCTATCGTGCGTG
1 CTATCGTGTGTCAATCCTATCCTTTCGTGCGTG
869031 AATCCTATCC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (42 bp):
CTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTGTT
Found at i:869031 original size:21 final size:21
Alignment explanation
Indices: 868906--869046 Score: 120
Period size: 21 Copynumber: 6.7 Consensus size: 21
868896 AACATCGTTT
* ** *
868906 ATCCTTTCCTATCGTGTATCA
1 ATCCTATCCTATCGTGCGTGA
* * *
868927 ATCCTATCCTTTCGTGCATGT
1 ATCCTATCCTATCGTGCGTGA
* * * *
868948 ATACTGTTCTATCGTGCGTCA
1 ATCCTATCCTATCGTGCGTGA
* *
868969 ATCCTATCCTTTCGTGCGTGT
1 ATCCTATCCTATCGTGCGTGA
* * * *
868990 ATACTGTTCTATCGTGTGTGA
1 ATCCTATCCTATCGTGCGTGA
*
869011 ATTCTATCCTATCGTGCGTGA
1 ATCCTATCCTATCGTGCGTGA
869032 ATCCTATCCTATCGT
1 ATCCTATCCTATCGT
869047 TTATCTTGTA
Statistics
Matches: 91, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 91 1.00
ACGTcount: A:0.17, C:0.26, G:0.16, T:0.41
Consensus pattern (21 bp):
ATCCTATCCTATCGTGCGTGA
Found at i:869044 original size:42 final size:42
Alignment explanation
Indices: 868912--869046 Score: 171
Period size: 42 Copynumber: 3.2 Consensus size: 42
868902 GTTTATCCTT
* *
868912 TCCTATCGTGTATCAATCCTATCCTTTCGTGCATGTATACTG
1 TCCTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTG
* *
868954 TTCTATCGTGCGTCAATCCTATCCTTTCGTGCGTGTATACTG
1 TCCTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTG
* * * * * * *
868996 TTCTATCGTGTGTGAATTCTATCCTATCGTGCGTGAATCCTA
1 TCCTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTG
869038 TCCTATCGT
1 TCCTATCGT
869047 TTATCTTGTA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 81 1.00
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (42 bp):
TCCTATCGTGTGTCAATCCTATCCTTTCGTGCGTGTATACTG
Found at i:888872 original size:43 final size:42
Alignment explanation
Indices: 888822--889252 Score: 547
Period size: 43 Copynumber: 10.0 Consensus size: 42
888812 CTCAAGAAAT
* *
888822 TGTGTTGCTCAAGGATACAATGACCAGTAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGA-ACAACGACCAATAGGGTCGGCTCTTCC
**
888865 TGTGTTGCTCAAGGAATGGACGACCAATAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGAA-CAACGACCAATAGGGTCGGCTCTTCC
* *
888908 TGTGTTGCTCAAAGAACAGACAACCAATAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGAACA-ACGACCAATAGGGTCGGCTCTTCC
** * * *
888951 TGTGTTGCTCAAGGAACAGGTGACCAGTAGGGTCAGCTCTTTC
1 TGTGTTGCTCAAGGAACA-ACGACCAATAGGGTCGGCTCTTCC
** * *
888994 TGTGTTGCTCAAGGAACGGTCGACAAATAGGGTTGGCTCTTCC
1 TGTGTTGCTCAAGGAAC-AACGACCAATAGGGTCGGCTCTTCC
* *
889037 TGTGTTGCTCAAGGAACGGATGACCAATAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGAAC-AACGACCAATAGGGTCGGCTCTTCC
* *
889080 TGTGTTGCTCAAGGAACGGACGACCAATAGGGTTGGCTCTTCC
1 TGTGTTGCTCAAGGAAC-AACGACCAATAGGGTCGGCTCTTCC
* * *
889123 TGTGTTGCTCAAGGAACGGATGACCAATAGGGTCGTCTCTTCC
1 TGTGTTGCTCAAGGAAC-AACGACCAATAGGGTCGGCTCTTCC
*
889166 TGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGAACA-ACGACCAATAGGGTCGGCTCTTCC
* *
889209 TGTGTTGCTCAAGGAACAGACAACTAATAGGGTCGGCTCTTCC
1 TGTGTTGCTCAAGGAACA-ACGACCAATAGGGTCGGCTCTTCC
889252 T
1 T
889253 CTGTACATAC
Statistics
Matches: 347, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
42 1 0.00
43 346 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (42 bp):
TGTGTTGCTCAAGGAACAACGACCAATAGGGTCGGCTCTTCC
Found at i:888941 original size:86 final size:86
Alignment explanation
Indices: 888822--889252 Score: 641
Period size: 86 Copynumber: 5.0 Consensus size: 86
888812 CTCAAGAAAT
* * * *
888822 TGTGTTGCTCAAGGATACA-ATGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAATGGAC
1 TGTGTTGCTCAAGGA-ACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGAT
888886 GACCAATAGGGTCGGCTCTTCC
65 GACCAATAGGGTCGGCTCTTCC
* *
888908 TGTGTTGCTCAAAGAACAGACAACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGG-T
1 TGTGTTGCTCAAGGAACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAAC-GGAT
* * *
888972 GACCAGTAGGGTCAGCTCTTTC
65 GACCAATAGGGTCGGCTCTTCC
* * * *
888994 TGTGTTGCTCAAGGAACGGTCGACAAATAGGGTTGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
1 TGTGTTGCTCAAGGAACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
889059 ACCAATAGGGTCGGCTCTTCC
66 ACCAATAGGGTCGGCTCTTCC
* *
889080 TGTGTTGCTCAAGGAACGGACGACCAATAGGGTTGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
1 TGTGTTGCTCAAGGAACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
*
889145 ACCAATAGGGTCGTCTCTTCC
66 ACCAATAGGGTCGGCTCTTCC
* * **
889166 TGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGACA
1 TGTGTTGCTCAAGGAACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
*
889231 ACTAATAGGGTCGGCTCTTCC
66 ACCAATAGGGTCGGCTCTTCC
889252 T
1 T
889253 CTGTACATAC
Statistics
Matches: 313, Mismatches: 29, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
85 5 0.02
86 306 0.98
87 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (86 bp):
TGTGTTGCTCAAGGAACAGACGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGATG
ACCAATAGGGTCGGCTCTTCC
Found at i:889063 original size:129 final size:129
Alignment explanation
Indices: 888822--889252 Score: 634
Period size: 129 Copynumber: 3.3 Consensus size: 129
888812 CTCAAGAAAT
* * *
888822 TGTGTTGCTCAAGGATACA-ATGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAATGGAC
1 TGTGTTGCTCAAGGA-ACAGGTGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGTC
*
888886 GACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAAGAACAGACAACCAATAGGGTCGGCTCTTCC
65 GACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTCC
* *
888951 TGTGTTGCTCAAGGAACAGGTGACCAGTAGGGTCAGCTCTTTCTGTGTTGCTCAAGGAACGGTCG
1 TGTGTTGCTCAAGGAACAGGTGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGTCG
* * * **
889016 ACAAATAGGGTTGGCTCTTCCTGTGTTGCTCAAGGAACGGATGACCAATAGGGTCGGCTCTTCC
66 ACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTCC
* * *
889080 TGTGTTGCTCAAGGAAC-GGACGACCAATAGGGTTGGCTCTTCCTGTGTTGCTCAAGGAACGGAT
1 TGTGTTGCTCAAGGAACAGG-TGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGG-T
*
889144 -GACCAATAGGGTCGTCTCTTCCTGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTC
64 CGACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTC
889208 C
129 C
*** * *
889209 TGTGTTGCTCAAGGAACAGACAACTAATAGGGTCGGCTCTTCCT
1 TGTGTTGCTCAAGGAACAGGTGACCAGTAGGGTCGGCTCTTCCT
889253 CTGTACATAC
Statistics
Matches: 272, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
128 5 0.02
129 265 0.97
130 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (129 bp):
TGTGTTGCTCAAGGAACAGGTGACCAGTAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACGGTCG
ACCAATAGGGTCGGCTCTTCCTGTGTTGCTCAAGGAACAGACAACCAATAGGGTCGGCTCTTCC
Found at i:892387 original size:161 final size:160
Alignment explanation
Indices: 892125--892639 Score: 780
Period size: 161 Copynumber: 3.2 Consensus size: 160
892115 GTTTCTGTTC
** * * * *
892125 ATTTTCTTTGCAGAGGATGAACATATTGAAATGAAATTTGGTTTACAGTTTTATCTAAATAATAT
1 ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
* * **
892190 CTAGGTCAAGTTTGATATTGGGTACGATCAAGCAATTTTCGACAGAGCTATGCCCCTTGGACATA
66 CTAGGTCAAGTTTGAT-TTGGGTATGGTTGAGCAATTTTCGACAGAGCTATGCCCCTTGGACATA
* *
892255 GAAAATTTTTAGTTATTTGCAGTTTCCACTT
130 GAAAAATTTCAGTTATTTGCAGTTTCCACTT
892286 ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
1 ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
* *
892351 CTAGGTCAAATTTGATTTGGGGTATGGTTGAGCAATTTTCGACAGAGCTTTGCCCCTTGGACATA
66 CTAGGTCAAGTTTGATTT-GGGTATGGTTGAGCAATTTTCGACAGAGCTATGCCCCTTGGACATA
* *
892416 GAAAAAATTCAGTTATTTGCAGTTTCCGCTT
130 GAAAAATTTCAGTTATTTGCAGTTTCCACTT
892447 ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
1 ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
* * *
892512 CTAGGTCAAGTTTGATTTTGGGTATGGTTGAGCAATTTTTGACAGAGTTATGCCCCTTCGACATA
66 CTAGGTCAAGTTTGA-TTTGGGTATGGTTGAGCAATTTTCGACAGAGCTATGCCCCTTGGACATA
* * *
892577 GAAAAATTTCAGTTAATTGCAGTTTCCCCTA
130 GAAAAATTTCAGTTATTTGCAGTTTCCACTT
*
892608 ATTTTCTT-AGCAGAGGGTGCACATAATGATAT
1 ATTTTCTTCA-CAGAGGGTGCACATATTGATAT
892640 GAAAGAACAA
Statistics
Matches: 325, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
160 3 0.01
161 319 0.98
162 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (160 bp):
ATTTTCTTCACAGAGGGTGCACATATTGATATTAAATTTGGTTTACAGTTTTATCTAAATAATAT
CTAGGTCAAGTTTGATTTGGGTATGGTTGAGCAATTTTCGACAGAGCTATGCCCCTTGGACATAG
AAAAATTTCAGTTATTTGCAGTTTCCACTT
Found at i:893200 original size:16 final size:15
Alignment explanation
Indices: 893178--893215 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
893168 TTGCAACCGA
*
893178 AAAATAAATAAATTG
1 AAAATAAATAAATAG
893193 ATAAATAAATAAATAG
1 A-AAATAAATAAATAG
893209 AAAATAA
1 AAAATAA
893216 CAACACACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (15 bp):
AAAATAAATAAATAG
Found at i:894287 original size:2 final size:2
Alignment explanation
Indices: 894275--894314 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
894265 TCCAAGAAAC
* *
894275 GA GA AA GA GA GA GA GA GA GA GA GA GA GG GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
894315 ATGTGTGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:894709 original size:2 final size:2
Alignment explanation
Indices: 894702--894733 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
894692 TAAACTTAAA
894702 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
894734 GAATATATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:918958 original size:6 final size:6
Alignment explanation
Indices: 918937--919041 Score: 74
Period size: 6 Copynumber: 18.0 Consensus size: 6
918927 ACAAAACAGA
* * *
918937 GTTA-G GTTTGG GTTAGG ATTAGG GTTA-G TTTAGG GTTAGGG GTTAGG
1 GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTA-GG GTTAGG
* * * * * * *
918984 ATTAGG GTTA-G TTTAGG GTTCGA ATTAGG G-TAAG TTTAGG GTTAGG
1 GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG
*
919030 ATTAGG GTTAGG
1 GTTAGG GTTAGG
919042 TAACCATTGT
Statistics
Matches: 73, Mismatches: 22, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
5 14 0.19
6 53 0.73
7 6 0.08
ACGTcount: A:0.21, C:0.01, G:0.41, T:0.37
Consensus pattern (6 bp):
GTTAGG
Found at i:918963 original size:23 final size:24
Alignment explanation
Indices: 918937--919042 Score: 101
Period size: 23 Copynumber: 4.3 Consensus size: 24
918927 ACAAAACAGA
918937 GTTAGGTTT-GGGTTAGGATTAGGG
1 GTTAGGTTTAGGGTTAGGATTA-GG
*
918961 TTAGTTTAGGGTTAGGGGTTAGGATTAGG
1 ---G-TTAGGTTTA-GGGTTAGGATTAGG
* *
918990 GTTA-GTTTAGGGTTCGAATTAGG
1 GTTAGGTTTAGGGTTAGGATTAGG
*
919013 G-TAAGTTTAGGGTTAGGATTAGG
1 GTTAGGTTTAGGGTTAGGATTAGG
919036 GTTAGGT
1 GTTAGGT
919043 AACCATTGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
22 2 0.03
23 31 0.46
24 8 0.12
25 3 0.04
26 1 0.01
27 1 0.01
28 7 0.10
29 2 0.03
30 12 0.18
ACGTcount: A:0.21, C:0.01, G:0.41, T:0.38
Consensus pattern (24 bp):
GTTAGGTTTAGGGTTAGGATTAGG
Found at i:918980 original size:30 final size:30
Alignment explanation
Indices: 918946--919003 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
918936 AGTTAGGTTT
918946 GGGTTAGGATTAGGGTTAGTTTAGGGTTAG
1 GGGTTAGGATTAGGGTTAGTTTAGGGTTAG
918976 GGGTTAGGATTAGGGTTAGTTTAGGGTT
1 GGGTTAGGATTAGGGTTAGTTTAGGGTT
919004 CGAATTAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (30 bp):
GGGTTAGGATTAGGGTTAGTTTAGGGTTAG
Found at i:919055 original size:9 final size:9
Alignment explanation
Indices: 919041--919076 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
919031 TTAGGGTTAG
*
919041 GTAACCATT
1 GTAACCAAT
919050 GTAACCAAT
1 GTAACCAAT
*
919059 GTTACCAAT
1 GTAACCAAT
919068 GTAACCAAT
1 GTAACCAAT
919077 TTAAAAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (9 bp):
GTAACCAAT
Found at i:919231 original size:101 final size:100
Alignment explanation
Indices: 919116--919329 Score: 327
Period size: 92 Copynumber: 2.2 Consensus size: 100
919106 CCCCATGGAT
919116 TATAGCTGTTACCATTGTTACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAG
1 TATAGCTG-TACCATTGTTACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAG
*
919181 GCTCGTCACCTCTGTTACCTTTTGTCATCAATAGAA
65 GCTCGTCACCTCTGTTACCTTTTGTCACCAATAGAA
* *
919217 TATAGCTGT---A-----ACCATTGTAACCACATAAAATAAGACCCCCTGCTAAACTGAAAAAGG
1 TATAGCTGTACCATTGTTACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGG
919274 CTCGTCACCTCTGTTACCTTTTGTCACCAATAGAA
66 CTCGTCACCTCTGTTACCTTTTGTCACCAATAGAA
919309 TATAGCTGTAACCATTGTTAC
1 TATAGCTGT-ACCATTGTTAC
919330 TGGATGAAAT
Statistics
Matches: 101, Mismatches: 3, Indels: 18
0.83 0.02 0.15
Matches are distributed among these distances:
92 88 0.87
96 1 0.01
97 1 0.01
100 1 0.01
101 10 0.10
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (100 bp):
TATAGCTGTACCATTGTTACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGG
CTCGTCACCTCTGTTACCTTTTGTCACCAATAGAA
Found at i:919292 original size:92 final size:92
Alignment explanation
Indices: 919135--919326 Score: 357
Period size: 92 Copynumber: 2.1 Consensus size: 92
919125 TACCATTGTT
919135 ACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGGCTCGTCACCTCTGTTACC
1 ACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGGCTCGTCACCTCTGTTACC
*
919200 TTTTGTCATCAATAGAATATAGCTGTA
66 TTTTGTCACCAATAGAATATAGCTGTA
* *
919227 ACCATTGTAACCACATAAAATAAGACCCCCTGCTAAACTGAAAAAGGCTCGTCACCTCTGTTACC
1 ACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGGCTCGTCACCTCTGTTACC
919292 TTTTGTCACCAATAGAATATAGCTGTA
66 TTTTGTCACCAATAGAATATAGCTGTA
919319 ACCATTGT
1 ACCATTGT
919327 TACTGGATGA
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 97 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (92 bp):
ACCATTGTAACCACATAAAATAAGACCCCCTGCAAAACAGAAAAAGGCTCGTCACCTCTGTTACC
TTTTGTCACCAATAGAATATAGCTGTA
Found at i:939126 original size:11 final size:11
Alignment explanation
Indices: 939106--939153 Score: 78
Period size: 11 Copynumber: 4.4 Consensus size: 11
939096 TGGACATGGT
939106 TAGTTATTCTA
1 TAGTTATTCTA
*
939117 TAGCTATTCTA
1 TAGTTATTCTA
939128 TAGTTATTCTA
1 TAGTTATTCTA
*
939139 TAGTTATTCTG
1 TAGTTATTCTA
939150 TAGT
1 TAGT
939154 GGAAGACAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.52
Consensus pattern (11 bp):
TAGTTATTCTA
Found at i:942158 original size:33 final size:33
Alignment explanation
Indices: 942116--942183 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
942106 TGAAGAAGAT
942116 ATCCTTATTGATAACAAGGTCAAAGGTCAGAGA
1 ATCCTTATTGATAACAAGGTCAAAGGTCAGAGA
942149 ATCCTTATTGATAACAAGGTCAAAGGTCAGAGA
1 ATCCTTATTGATAACAAGGTCAAAGGTCAGAGA
942182 AT
1 AT
942184 AAACTAAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (33 bp):
ATCCTTATTGATAACAAGGTCAAAGGTCAGAGA
Found at i:948756 original size:2 final size:2
Alignment explanation
Indices: 948749--948799 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
948739 ATGTAGGTAT
948749 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
948791 GA GA GA GA G
1 GA GA GA GA G
948800 TGCTACGCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Done.