oyster.v9_M.fa.s53.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold82
Parameters: 2 7 7 80 10 50 500
Length:  1057086

Tables:   1   2   3   

This is table  3  of  3  ( 323 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826563--826673	5	22.4	5	78	12	113	4	17	22	55	1.59
826549--826612	33	1.9	33	81	6	76	6	14	18	60	1.54
827167--827273	21	5.0	21	77	6	97	29	16	16	36	1.92
834976--835007	16	2.0	16	100	0	64	25	6	18	50	1.70
835981--836052	2	36.0	2	97	0	135	50	1	0	48	1.09
842267--842328	2	30.5	2	93	3	106	0	46	0	51	1.01
844092--844121	15	2.0	15	100	0	60	20	26	6	46	1.75
847880--847940	20	3.0	20	78	4	68	57	11	8	22	1.60
853618--853669	20	2.6	20	87	0	77	25	30	17	26	1.97
860314--860355	2	21.0	2	100	0	84	0	50	0	50	1.00
860482--860537	2	28.0	2	100	0	112	0	50	0	50	1.00
872953--873025	24	3.3	24	67	25	79	31	24	19	24	1.98
872943--873049	41	2.6	41	98	0	205	30	25	18	25	1.98
883781--883808	14	2.0	14	100	0	56	42	7	14	35	1.73
885098--885142	22	2.0	22	100	0	90	33	13	22	31	1.92
890164--890232	23	3.0	23	89	0	102	28	8	8	53	1.61
894468--894647	15	11.2	15	68	19	62	48	10	3	37	1.56
894609--894643	18	1.9	18	94	0	61	54	8	0	37	1.31
894568--894652	15	5.5	15	78	10	82	48	14	2	35	1.56
894518--894714	98	2.0	96	83	8	247	47	10	4	37	1.59
894825--894878	28	1.9	28	85	14	76	51	16	1	29	1.55
900106--900156	24	2.1	25	85	3	68	45	7	31	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901687--902005	169	1.9	173	88	5	497	25	26	15	33	1.95
901687--902043	169	2.1	173	86	7	489	26	24	15	33	1.95
904879--905171	145	2.0	145	95	0	532	33	8	14	43	1.76
909220--909286	24	2.9	23	91	4	107	37	19	7	35	1.80
909991--910024	11	3.1	11	91	0	59	17	44	20	17	1.87
910020--910126	21	5.1	21	84	0	142	32	28	21	17	1.96
911614--911759	21	6.9	21	88	1	112	31	30	18	19	1.96
911635--911759	21	6.0	21	88	0	133	32	29	18	19	1.95
912505--912616	40	2.8	40	88	1	170	45	10	22	21	1.82
913883--913974	24	3.8	24	94	0	166	28	11	31	28	1.92
914920--914957	20	1.9	20	88	0	58	60	2	2	34	1.24
914949--914993	23	2.0	23	86	0	63	33	2	2	62	1.20
922805--923204	200	2.0	199	99	0	791	31	14	12	42	1.82
924757--925009	46	5.2	46	71	18	188	36	10	13	39	1.78
924842--924903	32	1.9	32	93	0	106	41	12	8	37	1.73
924874--925011	45	3.0	45	86	5	188	38	11	13	36	1.82
925033--925096	32	2.0	32	84	0	83	42	12	7	37	1.72
925203--925274	21	3.1	21	69	27	65	40	8	12	38	1.73
925198--925342	46	3.1	46	86	3	209	39	10	13	37	1.78
926139--926205	31	2.2	31	97	2	127	14	32	8	43	1.77
926385--926422	16	2.4	16	95	0	67	36	21	42	0	1.53
927541--927635	37	2.6	36	83	5	111	22	16	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929022--929046	2	12.5	2	100	0	50	48	0	0	52	1.00
929894--930217	159	2.0	158	98	0	630	35	17	17	28	1.93
934600--934679	39	2.1	39	97	0	151	41	12	11	35	1.79
939721--939784	2	32.0	2	100	0	128	0	50	0	50	1.00
941376--941423	1	48.0	1	82	0	60	6	2	0	91	0.48
942874--942928	2	27.5	2	100	0	110	0	49	0	50	1.00
946943--947067	39	3.2	39	80	0	142	22	12	26	38	1.90
950522--951847	48	27.2	48	87	3	1740	25	10	28	36	1.88
950522--951847	72	18.1	72	86	3	1740	25	10	28	36	1.88
950522--951516	24	41.5	24	94	0	1659	25	10	29	35	1.88
951555--951678	24	5.2	24	84	0	131	28	8	28	34	1.87
951626--951736	58	1.9	58	88	0	168	28	7	29	34	1.84
951684--951861	24	7.5	24	73	5	137	20	10	25	42	1.84
951423--951736	130	2.4	130	87	0	457	27	9	28	34	1.88
951423--951775	130	2.7	128	81	7	424	25	9	28	36	1.88
960574--960606	13	2.5	13	100	0	66	63	18	6	12	1.48
967902--967939	15	2.4	16	91	4	60	26	0	42	31	1.56
968917--968956	2	20.0	2	89	0	62	47	2	47	2	1.29
973602--973670	34	2.0	34	97	0	129	31	15	18	33	1.93
974715--975526	406	2.0	405	99	0	1615	40	16	12	30	1.86
975971--976198	24	9.7	24	87	3	320	32	12	12	42	1.80
978536--978585	4	12.8	4	91	4	75	30	26	44	0	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980353--980629	25	11.1	25	94	0	491	20	15	23	41	1.90
983297--983762	161	2.9	161	89	1	700	35	20	13	30	1.91
988055--988589	20	26.5	20	80	7	528	36	16	12	34	1.87
990940--991632	58	12.0	58	94	1	1223	25	27	19	28	1.98
1000093--1000141	23	2.2	22	88	3	71	34	12	20	32	1.90
1003374--1003437	4	15.8	4	80	9	76	0	0	20	79	0.73
1003382--1003448	33	2.0	33	83	11	84	1	1	20	76	0.95
1009745--1009840	47	2.0	47	100	0	192	25	25	18	31	1.98
1011052--1011121	34	2.1	34	91	0	113	37	10	7	45	1.65
1015242--1015268	13	2.1	13	100	0	54	37	22	7	33	1.82
1017496--1017586	15	5.9	15	70	27	59	48	9	3	38	1.53
1017521--1017558	20	1.9	20	84	10	51	47	7	7	36	1.62
1017805--1017858	20	2.7	20	85	0	63	44	12	5	37	1.66
1033254--1033288	2	18.0	2	94	5	63	48	0	0	51	1.00
1033819--1033905	43	2.0	43	100	0	174	51	11	16	20	1.75
1052036--1052464	44	9.8	44	92	2	691	20	20	18	39	1.92
1054419--1054488	2	35.0	2	100	0	140	0	50	0	50	1.00

Tables:   1   2   3

The End!