Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold82
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1057086
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.29
Warning! 131930 characters in sequence are not A, C, G, or T
File 4 of 3
Found at i:826571 original size:5 final size:5
Alignment explanation
Indices: 826563--826673 Score: 113
Period size: 5 Copynumber: 22.4 Consensus size: 5
826553 GTTTTAATTC
* *
826563 CGTTT CGTTT CGTTT CGATT --TTT GGTTT CGTTT CGTTT -GATTT CGTTT
1 CGTTT CGTTT CGTTT CGTTT CGTTT CGTTT CGTTT CGTTT CG-TTT CGTTT
* * * *
826611 CGTTT CGATT GGTTT CGTTT CGTTT CG-TT CGACTT CGTTT GGTTT CGTTT
1 CGTTT CGTTT CGTTT CGTTT CGTTT CGTTT CG-TTT CGTTT CGTTT CGTTT
826661 CGATTT CGTTT CG
1 CG-TTT CGTTT CG
826674 CACTTTACAT
Statistics
Matches: 89, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
3 2 0.02
4 5 0.06
5 72 0.81
6 10 0.11
ACGTcount: A:0.05, C:0.17, G:0.23, T:0.56
Consensus pattern (5 bp):
CGTTT
Found at i:826586 original size:33 final size:33
Alignment explanation
Indices: 826549--826612 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
826539 TTGATACTAG
*
826549 TTTTGTTTTAATTCCGTTTCG-TTTCGTTTCGAT
1 TTTTGGTTTAATTCCGTTT-GATTTCGTTTCGAT
** *
826582 TTTTGGTTTCGTTTCGTTTGATTTCGTTTCG
1 TTTTGGTTTAATTCCGTTTGATTTCGTTTCG
826613 TTTCGATTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 1 0.04
33 25 0.96
ACGTcount: A:0.06, C:0.14, G:0.19, T:0.61
Consensus pattern (33 bp):
TTTTGGTTTAATTCCGTTTGATTTCGTTTCGAT
Found at i:827191 original size:21 final size:21
Alignment explanation
Indices: 827167--827273 Score: 97
Period size: 21 Copynumber: 5.0 Consensus size: 21
827157 CCTTCTATTA
827167 TCACGAGATAATATCTCGTTT
1 TCACGAGATAATATCTCGTTT
* *
827188 TCACAAGATAATTTCTCGTTTT
1 TCACGAGATAATATCTCG-TTT
* **
827210 TCACGAGTTAATAAGTCGTTT
1 TCACGAGATAATATCTCGTTT
* * **
827231 GCATGCGAGACAATAAGTCGTTT
1 TCA--CGAGATAATATCTCGTTT
*
827254 TCACGAGATAATATATCGTT
1 TCACGAGATAATATCTCGTT
827274 ATAAATGGAC
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
21 35 0.51
22 16 0.23
23 18 0.26
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (21 bp):
TCACGAGATAATATCTCGTTT
Found at i:834997 original size:16 final size:16
Alignment explanation
Indices: 834976--835007 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
834966 TTGATGTGAT
834976 GTTTTGTTTGTAAACA
1 GTTTTGTTTGTAAACA
834992 GTTTTGTTTGTAAACA
1 GTTTTGTTTGTAAACA
835008 TTTAAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
GTTTTGTTTGTAAACA
Found at i:835994 original size:2 final size:2
Alignment explanation
Indices: 835981--836052 Score: 135
Period size: 2 Copynumber: 36.0 Consensus size: 2
835971 GTAGATGTAA
*
835981 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
836023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
836053 GTACTCAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:842274 original size:2 final size:2
Alignment explanation
Indices: 842267--842328 Score: 106
Period size: 2 Copynumber: 30.5 Consensus size: 2
842257 GAAAGAAGGT
*
842267 TC TC TC TC TC TC TC TC TC TC TC NTC TC TT TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC
842310 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
842329 AATGGTATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
2 55 0.96
3 2 0.04
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:844112 original size:15 final size:15
Alignment explanation
Indices: 844092--844121 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
844082 TAGGAAGCAT
844092 TTTTTCACTGCCTAA
1 TTTTTCACTGCCTAA
844107 TTTTTCACTGCCTAA
1 TTTTTCACTGCCTAA
844122 CCTTATGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.47
Consensus pattern (15 bp):
TTTTTCACTGCCTAA
Found at i:847938 original size:20 final size:20
Alignment explanation
Indices: 847880--847940 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
847870 GAGAAAATAA
**
847880 AGAATACAAATGAAAACCAT
1 AGAATACAAATGAAAATTAT
* *
847900 ACAATTCAAATGAAAAATTAT
1 AGAATACAAATG-AAAATTAT
*
847921 AGAATACCAATGAAAATTAT
1 AGAATACAAATGAAAATTAT
847941 GAAATACGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.57, C:0.11, G:0.08, T:0.23
Consensus pattern (20 bp):
AGAATACAAATGAAAATTAT
Found at i:853643 original size:20 final size:20
Alignment explanation
Indices: 853618--853669 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
853608 ACTTTATTTC
853618 CCAGTATTTCCCGGGAAATA
1 CCAGTATTTCCCGGGAAATA
* * *
853638 CCAGTAATTCCCGGGAATTC
1 CCAGTATTTCCCGGGAAATA
853658 CCAGTATTTCCC
1 CCAGTATTTCCC
853670 ACCGTCCTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (20 bp):
CCAGTATTTCCCGGGAAATA
Found at i:860321 original size:2 final size:2
Alignment explanation
Indices: 860314--860355 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
860304 TTTTCAAAAT
860314 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
860356 AGACAAAGCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:860489 original size:2 final size:2
Alignment explanation
Indices: 860482--860537 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
860472 TTTTATGTTA
860482 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
860524 CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT
860538 GGAGTACGTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:872980 original size:24 final size:24
Alignment explanation
Indices: 872953--873025 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 24
872943 TTACGCGTCA
872953 CGTAACTTACTGAACGGACATCAG
1 CGTAACTTACTGAACGGACATCAG
*
872977 CGTAACTT--T--AC-G-CGTCA-
1 CGTAACTTACTGAACGGACATCAG
*
872994 CGTAAATTACTGAACGGACATCAG
1 CGTAACTTACTGAACGGACATCAG
873018 CGTAACTT
1 CGTAACTT
873026 TACGCGTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
17 7 0.18
18 4 0.11
19 2 0.05
20 2 0.05
21 2 0.05
22 2 0.05
23 4 0.11
24 15 0.39
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
CGTAACTTACTGAACGGACATCAG
Found at i:873064 original size:41 final size:41
Alignment explanation
Indices: 872943--873049 Score: 205
Period size: 41 Copynumber: 2.6 Consensus size: 41
872933 TTTTACGCAA
*
872943 TTACGCGTCACGTAACTTACTGAACGGACATCAGCGTAACT
1 TTACGCGTCACGTAAATTACTGAACGGACATCAGCGTAACT
872984 TTACGCGTCACGTAAATTACTGAACGGACATCAGCGTAACT
1 TTACGCGTCACGTAAATTACTGAACGGACATCAGCGTAACT
873025 TTACGCGTCACGTAAATTACTGAAC
1 TTACGCGTCACGTAAATTACTGAAC
873050 TTTCCTCAAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
TTACGCGTCACGTAAATTACTGAACGGACATCAGCGTAACT
Found at i:883800 original size:14 final size:14
Alignment explanation
Indices: 883781--883808 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
883771 TGTGTCTAAT
883781 TAGGAATTCAATTA
1 TAGGAATTCAATTA
883795 TAGGAATTCAATTA
1 TAGGAATTCAATTA
883809 GTAAGTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
TAGGAATTCAATTA
Found at i:885123 original size:22 final size:22
Alignment explanation
Indices: 885098--885142 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
885088 CCGCTACAAA
885098 AGTGAGTGACCTTGTCAAATAT
1 AGTGAGTGACCTTGTCAAATAT
885120 AGTGAGTGACCTTGTCAAATAT
1 AGTGAGTGACCTTGTCAAATAT
885142 A
1 A
885143 CCAGTACTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (22 bp):
AGTGAGTGACCTTGTCAAATAT
Found at i:890204 original size:25 final size:23
Alignment explanation
Indices: 890164--890232 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
890154 CACCATACAT
*
890164 ATAATAAATGTGTTTTTTATTCC
1 ATAATATATGTGTTTTTTATTCC
*
890187 ATAATATATGTGATTTTTATTCC
1 ATAATATATGTGTTTTTTATTCC
* *
890210 ATAATGTATATGTTTTTTATTCC
1 ATAATATATGTGTTTTTTATTCC
890233 TCTGAAGCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (23 bp):
ATAATATATGTGTTTTTTATTCC
Found at i:894548 original size:15 final size:15
Alignment explanation
Indices: 894468--894647 Score: 62
Period size: 15 Copynumber: 11.2 Consensus size: 15
894458 GATAAAGTAA
*
894468 AATATTATAAAATAC
1 AATATTATATAATAC
* *
894483 ATTATTATATTATAC
1 AATATTATATAATAC
*
894498 -ATATTGTATCATATGAC
1 AATATTATAT-A-AT-AC
*
894515 ACA-ATAATATATATAAC
1 A-ATATTATATA-AT-AC
894532 AATATTATATAATAC
1 AATATTATATAATAC
*
894547 AATTTCATGTGATATGATA-
1 AA--T-AT-T-ATATAATAC
*
894566 ATATATCATATAA-ACC
1 A-ATATTATATAATA-C
* *
894582 AATATCATATCATAC
1 AATATTATATAATAC
** *
894597 AATATCGTATGATAC
1 AATATTATATAATAC
*
894612 AATATAATATAATATTAC
1 AATAT--TAT-ATAATAC
*
894630 AATATCATATAATAC
1 AATATTATATAATAC
894645 AAT
1 AAT
894648 TTCATGTGAT
Statistics
Matches: 125, Mismatches: 22, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
14 8 0.06
15 59 0.47
16 9 0.07
17 20 0.16
18 18 0.14
19 3 0.02
20 8 0.06
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (15 bp):
AATATTATATAATAC
Found at i:894632 original size:18 final size:18
Alignment explanation
Indices: 894609--894643 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
894599 TATCGTATGA
894609 TACAATATAATATAATAT
1 TACAATATAATATAATAT
*
894627 TACAATATCATATAATA
1 TACAATATAATATAATA
894644 CAATTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (18 bp):
TACAATATAATATAATAT
Found at i:894652 original size:15 final size:15
Alignment explanation
Indices: 894568--894652 Score: 82
Period size: 15 Copynumber: 5.5 Consensus size: 15
894558 ATATGATAAT
894568 ATATCATATAA-ACCA
1 ATATCATATAATA-CA
*
894583 ATATCATATCATACA
1 ATATCATATAATACA
* *
894598 ATATCGTATGATACA
1 ATATCATATAATACA
*
894613 ATATAATATAATATTACA
1 ATATCATAT-A-A-TACA
894631 ATATCATATAATACA
1 ATATCATATAATACA
*
894646 ATTTCAT
1 ATATCAT
894653 GTGATATAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
15 42 0.72
16 2 0.03
17 2 0.03
18 12 0.21
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.35
Consensus pattern (15 bp):
ATATCATATAATACA
Found at i:894710 original size:98 final size:96
Alignment explanation
Indices: 894518--894714 Score: 247
Period size: 98 Copynumber: 2.0 Consensus size: 96
894508 ATATGACACA
* *
894518 ATAATATATATAACAATATTATATAATACAATTTCATGTGATATGATAATATATCATATAAACCA
1 ATAATATATATAACAATATCATATAATACAATTTCATGTGATATAATAATATAT-ATATAAACCA
* *
894583 ATATCATATCATACAATATCGTATGATACAAT
65 ATATCATATCATACAATATAGAATGATACAAT
* **
894615 ATAATATAATATTACAATATCATATAATACAATTTCATGTGATATAATTCTATAT-TACTGAAAC
1 ATAATAT-ATATAACAATATCATATAATACAATTTCATGTGATATAATAATATATATA-T-AAAC
*
894679 CAATATCATATTATA-ATATTATAGAAT-ATACAAT
63 CAATATCATATCATACA-A-TATAGAATGATACAAT
894713 AT
1 AT
894715 TGTATCATAG
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
96 2 0.02
97 9 0.10
98 70 0.80
99 6 0.07
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.38
Consensus pattern (96 bp):
ATAATATATATAACAATATCATATAATACAATTTCATGTGATATAATAATATATATATAAACCAA
TATCATATCATACAATATAGAATGATACAAT
Found at i:894875 original size:28 final size:28
Alignment explanation
Indices: 894825--894878 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
894815 GTATCATAAT
894825 ATACAATACTATACATAACAATATCATG
1 ATACAATACTATACATAACAATATCATG
894853 ATACAATA-TCATATCATAA-AATATCA
1 ATACAATACT-ATA-CATAACAATATCA
894879 AAAAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.04
28 18 0.75
29 5 0.21
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.30
Consensus pattern (28 bp):
ATACAATACTATACATAACAATATCATG
Found at i:900140 original size:24 final size:25
Alignment explanation
Indices: 900106--900156 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
900096 CAATGAACAA
900106 ATGGACAGGAAAGATAGACAGAATG
1 ATGGACAGGAAAGATAGACAGAATG
* * *
900131 ATGGA-AGGAAATATGGACAGACTG
1 ATGGACAGGAAAGATAGACAGAATG
900155 AT
1 AT
900157 CACTTTAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.45, C:0.08, G:0.31, T:0.16
Consensus pattern (25 bp):
ATGGACAGGAAAGATAGACAGAATG
Found at i:901991 original size:169 final size:173
Alignment explanation
Indices: 901687--902005 Score: 497
Period size: 169 Copynumber: 1.9 Consensus size: 173
901677 ATTTTCTGAT
901687 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
1 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
* *
901752 AACCCTACTCCCGGGGGTGTCATTATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTTC
66 AACCCTACTCCCGGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTCC
*
901817 ACACAAGTTTCAGCTTTCCTGGCTGATTAGTTTCTGAGAAGGA
131 ACACAAGTTTCAGATTTCCTGGCTGATTAGTTTCTGAGAAGGA
*
901860 GATTTTTAAAGATTTACTCTATATATTCCTATG-AAAA-ATTTGACCCCCC-CCCCATTGTGGCC
1 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACA-TTGACCCCCCACCCCATTGTGGCC
* * * *
901922 CCATCCTAC-CCCTGGGGGT-T-ATGATTTTTACAATTTTGAATCTACACTACCTGAGGATGCTT
65 CAACCCTACTCCC-GGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTT
*
901984 CCACACAAGTTTCCGATTTCCT
129 CCACACAAGTTTCAGATTTCCT
902006 TGCTAAAGGG
Statistics
Matches: 135, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
169 58 0.43
170 4 0.03
171 27 0.20
172 14 0.10
173 32 0.24
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (173 bp):
GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
AACCCTACTCCCGGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTCC
ACACAAGTTTCAGATTTCCTGGCTGATTAGTTTCTGAGAAGGA
Found at i:902026 original size:169 final size:173
Alignment explanation
Indices: 901687--902043 Score: 489
Period size: 169 Copynumber: 2.1 Consensus size: 173
901677 ATTTTCTGAT
901687 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
1 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
* *
901752 AACCCTACTCCCGGGGGTGTCATTATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTTC
66 AACCCTACTCCCGGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTCC
* * * *
901817 ACACAAGTTTCAGCTTTCCTGGCTGATTAGTTTCTGAGAAGGA
131 ACACAAGTTTCAGATTTCCTGGCTGATAAGGTTCTGAGAAGAA
*
901860 GATTTTTAAAGATTTACTCTATATATTCCTATG-AAAA-ATTTGACCCCCC-CCCCATTGTGGCC
1 GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACA-TTGACCCCCCACCCCATTGTGGCC
* * * *
901922 CCATCCTAC-CCCTGGGGGT-T-ATGATTTTTACAATTTTGAATCTACACTACCTGAGGATGCTT
65 CAACCCTACTCCC-GGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTT
* *
901984 CCACACAAGTTTCCGATTTCCTTGCT-A-AAGGGTTCTTGAGAAGAA
129 CCACACAAGTTTCAGATTTCCTGGCTGATAA-GGTTC-TGAGAAGAA
902029 GATTTTTGAAA-ATTT
1 GATTTTT-AAAGATTT
902044 CTCGAAATTT
Statistics
Matches: 166, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
167 1 0.01
168 5 0.03
169 80 0.48
170 7 0.04
171 27 0.16
172 14 0.08
173 32 0.19
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (173 bp):
GATTTTTAAAGATTTACTCTACATATTCCTATGTAAAACATTGACCCCCCACCCCATTGTGGCCC
AACCCTACTCCCGGGGGTGTCATGATTTTCACAACTTTGAATCTACACTACCTGAGGATGCTTCC
ACACAAGTTTCAGATTTCCTGGCTGATAAGGTTCTGAGAAGAA
Found at i:905050 original size:145 final size:145
Alignment explanation
Indices: 904879--905171 Score: 532
Period size: 145 Copynumber: 2.0 Consensus size: 145
904869 CTCTAATTTG
904879 TACAAAATTTCATTTTCTATCATTTTTTTAAAAAATGTTTATTAATTAAATATATTTAATGCAGG
1 TACAAAATTTCATTTTCTATCATTTTTTTAAAAAATGTTTATTAATTAAATATATTTAATGCAGG
* *
904944 TTGAAACATATAACAAGGTTTAATCGAACACGTGGTTGTCTATTTATAGTTGTTTATTAAGGGTA
66 TTGAAACATATAACAAGGTTTAATCGAAAACGTGGTTGTCTATTTATAGTTGTTTATCAAGGGTA
905009 GTTTACGCGTAGTAA
131 GTTTACGCGTAGTAA
* * *
905024 TACAAAATTTCATTTTCTATCATTTTTTTTAAAATTGTTTATTTATTAAATATATTTAATGCAGG
1 TACAAAATTTCATTTTCTATCATTTTTTTAAAAAATGTTTATTAATTAAATATATTTAATGCAGG
*
905089 TTGAAATATATAACAAGGTTTAATCGAAAACGTGGTTGTCTATTTATAGTTGTTTATCAAGGGTA
66 TTGAAACATATAACAAGGTTTAATCGAAAACGTGGTTGTCTATTTATAGTTGTTTATCAAGGGTA
905154 GTTTACGCGTAGTAA
131 GTTTACGCGTAGTAA
905169 TAC
1 TAC
905172 TGGTTAGACC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 142 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (145 bp):
TACAAAATTTCATTTTCTATCATTTTTTTAAAAAATGTTTATTAATTAAATATATTTAATGCAGG
TTGAAACATATAACAAGGTTTAATCGAAAACGTGGTTGTCTATTTATAGTTGTTTATCAAGGGTA
GTTTACGCGTAGTAA
Found at i:909263 original size:24 final size:23
Alignment explanation
Indices: 909220--909286 Score: 107
Period size: 24 Copynumber: 2.9 Consensus size: 23
909210 GCCTCATTGA
**
909220 AATACCCCTACTGATAAAATTTT
1 AATACCCCTGTTGATAAAATTTT
909243 AATACCCCTTGTTGATAAAATTTT
1 AATACCCC-TGTTGATAAAATTTT
909267 AATACCCCTGTTGATAAAAT
1 AATACCCCTGTTGATAAAAT
909287 ATTGTTAGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.36
Consensus pattern (23 bp):
AATACCCCTGTTGATAAAATTTT
Found at i:910008 original size:11 final size:11
Alignment explanation
Indices: 909991--910024 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
909981 CTACTACACC
909991 ACACGCTCGCT
1 ACACGCTCGCT
*
910002 GCACGCTCGCT
1 ACACGCTCGCT
910013 ACACGCTCGCT
1 ACACGCTCGCT
910024 A
1 A
910025 AACGGTTCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.44, G:0.21, T:0.18
Consensus pattern (11 bp):
ACACGCTCGCT
Found at i:910049 original size:21 final size:21
Alignment explanation
Indices: 910020--910126 Score: 142
Period size: 21 Copynumber: 5.1 Consensus size: 21
910010 GCTACACGCT
* *
910020 CGCTAAACGGTTCACACGAAA
1 CGCTGAACGGTTTACACGAAA
910041 CGCTGAACGGTTTACACGAAA
1 CGCTGAACGGTTTACACGAAA
* * * *
910062 CGCTGCACGCTTTGCCCGAAA
1 CGCTGAACGGTTTACACGAAA
* *
910083 CGCTAAACGATTTACACGAAA
1 CGCTGAACGGTTTACACGAAA
910104 CGCTGAACGGTTTACACGAAA
1 CGCTGAACGGTTTACACGAAA
910125 CG
1 CG
910127 ATTCTCGCAC
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 73 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (21 bp):
CGCTGAACGGTTTACACGAAA
Found at i:911644 original size:23 final size:21
Alignment explanation
Indices: 911614--911759 Score: 112
Period size: 21 Copynumber: 6.9 Consensus size: 21
911604 ACGGTTCTCG
*
911614 CACGCTTTGCCCGAAACGATTTA
1 CACGCTTTGCCCGAAACG--CTA
911637 CACGCTTTGCCCGAAACGCTA
1 CACGCTTTGCCCGAAACGCTA
911658 CACGCTTTGCCCGAAACGCTA
1 CACGCTTTGCCCGAAACGCTA
* * * * *
911679 AACGGTTTACACGAAACGCTT
1 CACGCTTTGCCCGAAACGCTA
* ** *
911700 CACGATTCACACGAAACGCTA
1 CACGCTTTGCCCGAAACGCTA
* * * *
911721 AACGGTTTACACGAAACGCTA
1 CACGCTTTGCCCGAAACGCTA
* * * *
911742 AACGGTTTACACGAAACG
1 CACGCTTTGCCCGAAACG
911760 TTTCTCGCAC
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
21 92 0.84
23 18 0.16
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (21 bp):
CACGCTTTGCCCGAAACGCTA
Found at i:911661 original size:21 final size:21
Alignment explanation
Indices: 911635--911759 Score: 133
Period size: 21 Copynumber: 6.0 Consensus size: 21
911625 CGAAACGATT
* *
911635 TACACGCTTTGCCCGAAACGC
1 TACACGCTTTACACGAAACGC
* *
911656 TACACGCTTTGCCCGAAACGC
1 TACACGCTTTACACGAAACGC
* *
911677 TAAACGGTTTACACGAAACGC
1 TACACGCTTTACACGAAACGC
* * *
911698 TTCACGATTCACACGAAACGC
1 TACACGCTTTACACGAAACGC
* *
911719 TAAACGGTTTACACGAAACGC
1 TACACGCTTTACACGAAACGC
* *
911740 TAAACGGTTTACACGAAACG
1 TACACGCTTTACACGAAACG
911760 TTTCTCGCAC
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 92 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (21 bp):
TACACGCTTTACACGAAACGC
Found at i:912549 original size:40 final size:40
Alignment explanation
Indices: 912505--912616 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
912495 CTGGTGGTAG
912505 AAACAGATTGTCAAAGAGGTTGAAGTCTGAAACAGAATAA
1 AAACAGATTGTCAAAGAGGTTGAAGTCTGAAACAGAATAA
* *
912545 AAACATATTGTCAAAGAGGTTGAGGTCTGAAACAGAATAA
1 AAACAGATTGTCAAAGAGGTTGAAGTCTGAAACAGAATAA
* * *
912585 CAACAGATTGTCAAAAGATGTTGAAGACTGAA
1 AAACAGATTGTC-AAAGAGGTTGAAGTCTGAA
912617 CAACAACAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 48 0.75
41 16 0.25
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (40 bp):
AAACAGATTGTCAAAGAGGTTGAAGTCTGAAACAGAATAA
Found at i:913915 original size:24 final size:24
Alignment explanation
Indices: 913883--913974 Score: 166
Period size: 24 Copynumber: 3.8 Consensus size: 24
913873 CTTCCATGAA
913883 TGATACTGAGTGTGGTACAAGTAC
1 TGATACTGAGTGTGGTACAAGTAC
913907 TGATACTGAGTGTGGTACAAGTAC
1 TGATACTGAGTGTGGTACAAGTAC
* *
913931 TGATACGGGGTGTGGTACAAGTAC
1 TGATACTGAGTGTGGTACAAGTAC
913955 TGATACTGAGTGTGGTACAA
1 TGATACTGAGTGTGGTACAA
913975 TTACATTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (24 bp):
TGATACTGAGTGTGGTACAAGTAC
Found at i:914943 original size:20 final size:20
Alignment explanation
Indices: 914920--914957 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
914910 TTTTTTAATG
*
914920 AAAAATAATTTTTGAAAATA
1 AAAAACAATTTTTGAAAATA
*
914940 AAAAACAATTTTTTAAAA
1 AAAAACAATTTTTGAAAA
914958 ATTTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAAACAATTTTTGAAAATA
Found at i:914976 original size:23 final size:23
Alignment explanation
Indices: 914949--914993 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
914939 AAAAAACAAT
*
914949 TTTTTAAAAATTTTTTTTTAAAC
1 TTTTTAAAAATTTTATTTTAAAC
* *
914972 TTTTTGATAATTTTATTTTAAA
1 TTTTTAAAAATTTTATTTTAAA
914994 GAGATGTGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
TTTTTAAAAATTTTATTTTAAAC
Found at i:923148 original size:200 final size:199
Alignment explanation
Indices: 922805--923204 Score: 791
Period size: 200 Copynumber: 2.0 Consensus size: 199
922795 TCTCTTAAAT
922805 TGTCAAACCACAGAATGAACGTTAACCTCTATTTATGTATTCTTATTATCTGTCAGATTGATGTT
1 TGTCAAACCACAGAATGAACGTTAACCTCTATTTATGTATTCTTATTATCTGTCAGATTGATGTT
922870 GTATCACTATGATCAGTCATATACAATGCGTTATAACTACAAACCGCTGATATAAAACTAATTTT
66 GTATCACTATGATCAGTCATATACAATGCGTTATAACTACAAACCGCTGATATAAAACTAATTTT
922935 TTATCTGTATCTTCAGGTCTTTTTATTTGTAAACTTTTATATACTTGTGTGTGTATATATATATA
131 TTATCTGTATCTTCAGGTCTTTTTATTTGTAAACTTTTATATACTTGTGTGTGTATATATATATA
923000 TATA
196 TATA
923004 NTGTCAAACCACAGAATGAACGTTAACCTCTATTTATGTATTCTTATTATCTGTCAGATTGATGT
1 -TGTCAAACCACAGAATGAACGTTAACCTCTATTTATGTATTCTTATTATCTGTCAGATTGATGT
923069 TGTATCACTATGATCAGTCATATACAATGCGTTATAACTACAAACCGCTGATATAAAACTAATTT
65 TGTATCACTATGATCAGTCATATACAATGCGTTATAACTACAAACCGCTGATATAAAACTAATTT
923134 TTTATCTGTATCTTCAGGTCTTTTTATTTGTAAACTTTTATATACTTGTGTGTGTATATATATAT
130 TTTATCTGTATCTTCAGGTCTTTTTATTTGTAAACTTTTATATACTTGTGTGTGTATATATATAT
923199 ATATA
195 ATATA
923204 T
1 T
923205 ATATATNNNN
Statistics
Matches: 200, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
199 1 0.00
200 199 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (199 bp):
TGTCAAACCACAGAATGAACGTTAACCTCTATTTATGTATTCTTATTATCTGTCAGATTGATGTT
GTATCACTATGATCAGTCATATACAATGCGTTATAACTACAAACCGCTGATATAAAACTAATTTT
TTATCTGTATCTTCAGGTCTTTTTATTTGTAAACTTTTATATACTTGTGTGTGTATATATATATA
TATA
Found at i:924810 original size:46 final size:46
Alignment explanation
Indices: 924757--925009 Score: 188
Period size: 46 Copynumber: 5.2 Consensus size: 46
924747 ATTGACCCTC
*
924757 GTAGTTAAACAACTTATACATGTTTGTATTAGAATTACAATGTTAT
1 GTAGTTAAACAACTTATACATGTTTGTATTAAAATTACAATGTTAT
*** *
924803 GTAGTTAAACAACTTTTATTTGTTTGTTCATGTATTAGACAACTTATACATG-TAT
1 GTAGTTAAACAAC--TTA--TACATGTT--TGTATTA-A-AA-TTACA-ATGTTAT
* * *
924858 GTA-TTAAAATTACATTCAACTTGTACATGTATGAATTAAAATTACAATGTTAT
1 GTAGTT---A--A-A--CAACTTATACATGTTTGTATTAAAATTACAATGTTAT
* * * *
924911 GTAGTGAAACAGC-TCTACATGTATGTATTAAAATTACAATGTTAT
1 GTAGTTAAACAACTTATACATGTTTGTATTAAAATTACAATGTTAT
* * *
924956 GTAGCTAAACAACTTGTACATGTTTGTATTAAAATTACAACGTTAT
1 GTAGTTAAACAACTTATACATGTTTGTATTAAAATTACAATGTTAT
925002 GTAGTTAA
1 GTAGTTAA
925010 CATGTTTGTG
Statistics
Matches: 163, Mismatches: 23, Indels: 42
0.71 0.10 0.18
Matches are distributed among these distances:
45 40 0.25
46 52 0.32
48 4 0.02
49 1 0.01
50 5 0.03
51 1 0.01
52 10 0.06
53 10 0.06
54 7 0.04
55 11 0.07
56 9 0.06
57 1 0.01
58 4 0.02
59 1 0.01
60 3 0.02
62 4 0.02
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (46 bp):
GTAGTTAAACAACTTATACATGTTTGTATTAAAATTACAATGTTAT
Found at i:924885 original size:32 final size:32
Alignment explanation
Indices: 924842--924903 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
924832 ATGTATTAGA
*
924842 CAACTTATACATGTATGTATTAAAATTACATT
1 CAACTTATACATGTATGAATTAAAATTACATT
*
924874 CAACTTGTACATGTATGAATTAAAATTACA
1 CAACTTATACATGTATGAATTAAAATTACA
924904 ATGTTATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (32 bp):
CAACTTATACATGTATGAATTAAAATTACATT
Found at i:924945 original size:45 final size:45
Alignment explanation
Indices: 924874--925011 Score: 188
Period size: 45 Copynumber: 3.0 Consensus size: 45
924864 AAATTACATT
* *
924874 CAACTTGTACATGTATGAATTAAAATTACAATGTTATGTAGTGAAA
1 CAACTTCTACATGTATGTATTAAAATTACAATGTTATGTAGT-AAA
*
924920 CAGC-TCTACATGTATGTATTAAAATTACAATGTTATGTAGCTAAA
1 CAACTTCTACATGTATGTATTAAAATTACAATGTTATGTAG-TAAA
* * * *
924965 CAACTTGTACATGTTTGTATTAAAATTACAACGTTATGTAGTTAA
1 CAACTTCTACATGTATGTATTAAAATTACAATGTTATGTAGTAAA
925010 CA
1 CA
925012 TGTTTGTGTT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
45 45 0.55
46 37 0.45
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (45 bp):
CAACTTCTACATGTATGTATTAAAATTACAATGTTATGTAGTAAA
Found at i:925069 original size:32 final size:32
Alignment explanation
Indices: 925033--925096 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
925023 TGTAGTTAAA
* *
925033 CAACTTATACATGTATGTATTAAAACTATAAT
1 CAACTTATACACGTATGAATTAAAACTATAAT
* * *
925065 CAACTTGTACACGTATGAATTAATATTATAAT
1 CAACTTATACACGTATGAATTAAAACTATAAT
925097 GTAACGAAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (32 bp):
CAACTTATACACGTATGAATTAAAACTATAAT
Found at i:925227 original size:21 final size:21
Alignment explanation
Indices: 925203--925274 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 21
925193 CTTTCACATG
925203 TATGTATTAAAATTACAATGT
1 TATGTATTAAAATTACAATGT
*
925224 TATGTAGTTAAACAACTTGA-ACACGT
1 TATGTA-TT-AA-AA-TT-ACA-ATGT
925250 GTATGTATTAAAATTACAATGT
1 -TATGTATTAAAATTACAATGT
925272 TAT
1 TAT
925275 ATAGCTAAGC
Statistics
Matches: 41, Mismatches: 2, Indels: 16
0.69 0.03 0.27
Matches are distributed among these distances:
21 9 0.22
22 6 0.15
23 5 0.12
24 4 0.10
25 5 0.12
26 6 0.15
27 6 0.15
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (21 bp):
TATGTATTAAAATTACAATGT
Found at i:925319 original size:46 final size:46
Alignment explanation
Indices: 925198--925342 Score: 209
Period size: 46 Copynumber: 3.1 Consensus size: 46
925188 ATCAACTTTC
* * *
925198 ACATGTATGTATTAAAATTACAATGTTATGTAGTTAAACAACTTGA
1 ACATGTATGTATTAAAATTACAATGTTATATAGCTAAACAACTTGT
* * *
925244 ACACGTGTATGTATTAAAATTACAATGTTATATAGCTAAGCAATTTTT
1 ACA--TGTATGTATTAAAATTACAATGTTATATAGCTAAACAACTTGT
*
925292 ACATGTATGTATTAAAATTACAGTGTTATATAGCTAAACAACTTGT
1 ACATGTATGTATTAAAATTACAATGTTATATAGCTAAACAACTTGT
925338 ACATG
1 ACATG
925343 ACATGTATGA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 47 0.54
48 40 0.46
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (46 bp):
ACATGTATGTATTAAAATTACAATGTTATATAGCTAAACAACTTGT
Found at i:926217 original size:33 final size:31
Alignment explanation
Indices: 926139--926205 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
926129 ACAATGGTAA
926139 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
1 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
926170 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
1 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
926201 C-TTCT
1 CATTCT
926206 TATGCATAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.15, C:0.33, G:0.09, T:0.43
Consensus pattern (31 bp):
CATTCTCAGCAGTTATCTCTCTTTGCCCATT
Found at i:926406 original size:16 final size:16
Alignment explanation
Indices: 926385--926422 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
926375 ACGGAAGAGT
*
926385 GACAGACGGACGGACG
1 GACAGAAGGACGGACG
926401 GACAGAAGGACGGACG
1 GACAGAAGGACGGACG
926417 GACAGA
1 GACAGA
926423 GTGATTACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.21, G:0.42, T:0.00
Consensus pattern (16 bp):
GACAGAAGGACGGACG
Found at i:927625 original size:36 final size:36
Alignment explanation
Indices: 927541--927635 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 36
927531 AAATCCAATG
* * *
927541 GGGTCATTCTGTATTTATCAAGGTCTATATTTACTGG
1 GGGTCATTCTGCATTTATCAAGGCCTATATTTA-TGA
* *
927578 GGGTCTTTCTGCATTTATCAAGGCCTATATTCT-TTA
1 GGGTCATTCTGCATTTATCAAGGCCTATATT-TATGA
*
927614 GGGTCATTCTGCATATATCAAG
1 GGGTCATTCTGCATTTATCAAG
927636 ATGATAGTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 21 0.42
37 28 0.56
38 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (36 bp):
GGGTCATTCTGCATTTATCAAGGCCTATATTTATGA
Found at i:929029 original size:2 final size:2
Alignment explanation
Indices: 929022--929046 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
929012 TAAGTTGAAT
929022 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
929047 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:930176 original size:159 final size:158
Alignment explanation
Indices: 929894--930217 Score: 630
Period size: 159 Copynumber: 2.0 Consensus size: 158
929884 ATTAATATCG
*
929894 TATACATCATTATAGCTTGGGTGGGTATACATTCTATAGGTTATTCGTGATAGAAATAACCAGAT
1 TATATATCATTATAGCTTGGGTGGGTATACATTCTATAGGTTATTCGTGATAGAAATAACCAGAT
929959 CGTCTTCCCAACCTCGAGAAAAAAACCTGGGTGAAACATGTACAAAGTATTTATCACAGCAATAC
66 CGTCTTCCCAACCTCGAGAAAAAAACCTGGGTGAAACATGTACAAAGTATTTATCACAGCAATAC
930024 ACCTGTGGTTACACAGCGGTAAAATATA
131 ACCTGTGGTTACACAGCGGTAAAATATA
930052 TATATATNCATTATAGCTTGGGTGGGTATACATTCTATAGGTTATTCGTGATAGAAATAACCAGA
1 TATATAT-CATTATAGCTTGGGTGGGTATACATTCTATAGGTTATTCGTGATAGAAATAACCAGA
930117 TCGTCTTCCCAACCTCGAGAAAAAAACCTGGGTGAAACATGTACAAAGTATTTATCACAGCAATA
65 TCGTCTTCCCAACCTCGAGAAAAAAACCTGGGTGAAACATGTACAAAGTATTTATCACAGCAATA
930182 CACCTGTGGTTACACAGCGGTAAAATATA
130 CACCTGTGGTTACACAGCGGTAAAATATA
930211 TATATAT
1 TATATAT
930218 ANTAGTGATA
Statistics
Matches: 164, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
158 6 0.04
159 158 0.96
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (158 bp):
TATATATCATTATAGCTTGGGTGGGTATACATTCTATAGGTTATTCGTGATAGAAATAACCAGAT
CGTCTTCCCAACCTCGAGAAAAAAACCTGGGTGAAACATGTACAAAGTATTTATCACAGCAATAC
ACCTGTGGTTACACAGCGGTAAAATATA
Found at i:934643 original size:39 final size:39
Alignment explanation
Indices: 934600--934679 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
934590 ATTAAAGAAA
934600 TTAACACAATAATGGAAAGTTCAAATTATATTCCTTAAG
1 TTAACACAATAATGGAAAGTTCAAATTATATTCCTTAAG
*
934639 TTAACACAATAATGGAAAGTTCAGATTATATTCCTTAAG
1 TTAACACAATAATGGAAAGTTCAAATTATATTCCTTAAG
934678 TT
1 TT
934680 TCTAAACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (39 bp):
TTAACACAATAATGGAAAGTTCAAATTATATTCCTTAAG
Found at i:939728 original size:2 final size:2
Alignment explanation
Indices: 939721--939784 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
939711 NNGCGGTGTT
939721 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
939763 TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC
939785 CATGTACAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:941386 original size:1 final size:1
Alignment explanation
Indices: 941376--941423 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
941366 TTAACAACTG
* * * *
941376 TTTTTATTTTTATTTTTTATTCTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
941424 NNNNNNNNNN
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.06, C:0.02, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:942881 original size:2 final size:2
Alignment explanation
Indices: 942874--942928 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
942864 ATAATGAAAA
942874 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
942916 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
942929 GAACACATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:947004 original size:39 final size:39
Alignment explanation
Indices: 946943--947067 Score: 142
Period size: 39 Copynumber: 3.2 Consensus size: 39
946933 TTGTTTCCGT
* * * *
946943 AGTAGATGGTGACCCAGATTCTGTTGACATTTCTGTGGT
1 AGTAGATGGTAACCTAGTTTCTGTTGACATTTCTGTGGC
* ** *
946982 AGTAGATGGTAACCTAGTTTCTGTTAAGGTTTCTGTAGC
1 AGTAGATGGTAACCTAGTTTCTGTTGACATTTCTGTGGC
* ** *
947021 AGTATATGGTAATGTAGTTTCTGTTGACATTTCTCTGGC
1 AGTAGATGGTAACCTAGTTTCTGTTGACATTTCTGTGGC
947060 AGTAGATG
1 AGTAGATG
947068 AAAATATGGT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.38
Consensus pattern (39 bp):
AGTAGATGGTAACCTAGTTTCTGTTGACATTTCTGTGGC
Found at i:950593 original size:48 final size:48
Alignment explanation
Indices: 950522--951847 Score: 1740
Period size: 48 Copynumber: 27.2 Consensus size: 48
950512 CCCCACCAGT
**
950522 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** *
950570 TGTTGCTTGTGTGAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
*
950618 TGTTGTTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* *
950666 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* *
950714 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** * **
950762 TGTTGCTTGTGTGAGTAAAGTAAGTGTTGCTAGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* *
950810 TGTTGCTTGTGCCAGTAAATTAAGTGTTGCTTGTGCCAGTAAAGTTAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** *
950858 TGTTGCTTGTGTGAGTAAAGTAAGTAG-TGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGT-GTTGCTTGTGCCAGTAAAGTAAG
* * *
950906 TGTTGTTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** *
950954 TGTTGCTTGTGTGAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
*
951002 TGTTGTTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
*
951050 TGTTGTTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
951098 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* *
951146 TGTTGTTTGTGCCAATAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* *
951194 TGTTGTTTGTGCCAATAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
951242 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
*
951290 TGTTGCTTGTGCCAATAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
951338 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
951386 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
*
951434 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAATTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
* ** * *
951482 TGTTGCTTGTGCCAGTAAAGTTAGTGTTGCTTGTGTGAGTAATGTAAAAAA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGT---AAG
* * * * *
951533 TGGCTGTGCTAGTAAACTTGATTAAAGTAAGTGTTGCTTGTGCCAGTTAAGTAAG
1 T-G-T-TGCTTGT--GC--CAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** * * ** *
951588 TGTTGCTCATGCCAGTAAAGTAATTGTTGCTTGCGTGAGTAAAGTAAT
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
** * * *
951636 TGTTGCTTGTGTGAGTAAAGTAAGTGATGGTTGTGCAAGTAAACTTGGGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGC-------C---AGTAAAGTAAG
* **
951694 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCTAGTAAA-TCTGG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGT-AAG
* * ** ** * * *
951742 TGTTGCTTTTTCTTGTCGAGTAAGTGTTGCTTGTTCTAGTAAA-TCTAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGT-AAG
* **** ** *
951790 TGTTGCTTTTTTTTGTCGAGTAAGTGTTGCTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
951838 TGTTGCTTGT
1 TGTTGCTTGT
951848 TCTTGTAAGT
Statistics
Matches: 1142, Mismatches: 112, Indels: 48
0.88 0.09 0.04
Matches are distributed among these distances:
47 2 0.00
48 1048 0.92
49 2 0.00
50 1 0.00
51 3 0.00
52 6 0.01
53 2 0.00
54 7 0.01
55 3 0.00
56 1 0.00
58 67 0.06
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36
Consensus pattern (48 bp):
TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAG
Found at i:950639 original size:72 final size:72
Alignment explanation
Indices: 950522--951847 Score: 1740
Period size: 72 Copynumber: 18.1 Consensus size: 72
950512 CCCCACCAGT
** **
950522 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAGTGTTGCTTGTGTGAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
950587 AAGTAAG
66 AAGTAAG
* *
950594 TGTTGTTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
950659 AAGTAAG
66 AAGTAAG
* *
950666 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
950731 AAGTAAG
66 AAGTAAG
* * ** * **
950738 TGTTGTTTGTGCCAATAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAGTGTTGCTAGTGTGAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
950803 AAGTAAG
66 AAGTAAG
* * **
950810 TGTTGCTTGTGCCAGTAAATTAAGTGTTGCTTGTGCCAGTAAAGTTAGTGTTGCTTGTGTGAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
950875 AAGTAAG
66 AAGTAAG
* * * *
950882 TAG-TGTTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAAT
1 T-GTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGT
950946 AAAGTAAG
65 AAAGTAAG
** * *
950954 TGTTGCTTGTGTGAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951019 AAGTAAG
66 AAGTAAG
*
951026 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951091 AAGTAAG
66 AAGTAAG
* *
951098 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951163 AAGTAAG
66 AAGTAAG
* *
951170 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGTTTGTGCCAATAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951235 AAGTAAG
66 AAGTAAG
*
951242 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAATA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951307 AAGTAAG
66 AAGTAAG
951314 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951379 AAGTAAG
66 AAGTAAG
951386 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
951451 AAGTAAG
66 AAGTAAG
* * **
951458 TGTTGCTTGTGCCAGTAAATTAAGTGTTGCTTGTGCCAGTAAAGTTAGTGTTGCTTGTGTGAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
* *
951523 ATGTAAAAAA
66 AAGT---AAG
* * * * * **
951533 TGGCTGTGCTAGTAAACTTGATTAAAGTAAGTGTTGCTTGTGCCAGTTAAGTAAGTGTTGCTCAT
1 T-G-T-TGCTTGT--GC--CAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGT
*
951598 GCCAGTAAAGTAAT
59 GCCAGTAAAGTAAG
* ** * ** * *
951612 TGTTGCTTGCGTGAGTAAAGTAATTGTTGCTTGTGTGAGTAAAGTAAGTGATGGTTGTGCAAGTA
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGC-----
*
951677 AACTTGGGTAAAGTAAG
61 --C---AGTAAAGTAAG
* ** * * **
951694 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCTAGTAAA-TCTGGTGTTGCTTTTTCTTGT
1 TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGT-AAGTGTTGCTTGTGCCAGT
**
951758 CGAGTAAG
65 AAAGTAAG
* * * * **** ** *
951766 TGTTGCTTGTTCTAGTAAA-TCTAGTGTTGCTTTTTTTTGTCGAGTAAGTGTTGCTTGTGCCAAT
1 TGTTGCTTGTGCCAGTAAAGT-AAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGT
951830 AAAGTAAG
65 AAAGTAAG
951838 TGTTGCTTGT
1 TGTTGCTTGT
951848 TCTTGTAAGT
Statistics
Matches: 1111, Mismatches: 118, Indels: 50
0.87 0.09 0.04
Matches are distributed among these distances:
71 2 0.00
72 981 0.88
73 2 0.00
75 3 0.00
76 6 0.01
77 2 0.00
78 7 0.01
79 4 0.00
80 1 0.00
81 1 0.00
82 102 0.09
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36
Consensus pattern (72 bp):
TGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTA
AAGTAAG
Found at i:951523 original size:24 final size:24
Alignment explanation
Indices: 950522--951516 Score: 1659
Period size: 24 Copynumber: 41.5 Consensus size: 24
950512 CCCCACCAGT
950522 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
**
950546 TGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
**
950570 TGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950594 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950618 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
950642 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
950666 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* *
950690 TGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
950714 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* *
950738 TGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
**
950762 TGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* **
950786 TGTTGCTAGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950810 TGTTGCTTGTGCCAGTAAATTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950834 TGTTGCTTGTGCCAGTAAAGTTAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
**
950858 TGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950882 TAG-TGTTTGTGCCAGTAAAGTAAG
1 T-GTTGCTTGTGCCAGTAAAGTAAG
*
950906 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* *
950930 TGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
**
950954 TGTTGCTTGTGTGAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
950978 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
951002 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951026 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
951050 TGTTGTTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951074 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951098 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951122 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* *
951146 TGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951170 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
* *
951194 TGTTGTTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951218 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951242 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951266 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
951290 TGTTGCTTGTGCCAATAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951314 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951338 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951362 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951386 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951410 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951434 TGTTGCTTGTGCCAGTAAAGTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
951458 TGTTGCTTGTGCCAGTAAATTAAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
*
951482 TGTTGCTTGTGCCAGTAAAGTTAG
1 TGTTGCTTGTGCCAGTAAAGTAAG
951506 TGTTGCTTGTG
1 TGTTGCTTGTG
951517 TGAGTAATGT
Statistics
Matches: 916, Mismatches: 53, Indels: 4
0.94 0.05 0.00
Matches are distributed among these distances:
23 1 0.00
24 914 1.00
25 1 0.00
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36
Consensus pattern (24 bp):
TGTTGCTTGTGCCAGTAAAGTAAG
Found at i:951587 original size:24 final size:24
Alignment explanation
Indices: 951555--951678 Score: 131
Period size: 24 Copynumber: 5.2 Consensus size: 24
951545 TAAACTTGAT
951555 TAAAGTAAGTGTTGCTTGTGCCAG
1 TAAAGTAAGTGTTGCTTGTGCCAG
* **
951579 TTAAGTAAGTGTTGCTCATGCCAG
1 TAAAGTAAGTGTTGCTTGTGCCAG
* * **
951603 TAAAGTAATTGTTGCTTGCGTGAG
1 TAAAGTAAGTGTTGCTTGTGCCAG
* **
951627 TAAAGTAATTGTTGCTTGTGTGAG
1 TAAAGTAAGTGTTGCTTGTGCCAG
* * *
951651 TAAAGTAAGTGATGGTTGTGCAAG
1 TAAAGTAAGTGTTGCTTGTGCCAG
951675 TAAA
1 TAAA
951679 CTTGGGTAAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 84 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.35
Consensus pattern (24 bp):
TAAAGTAAGTGTTGCTTGTGCCAG
Found at i:951698 original size:58 final size:58
Alignment explanation
Indices: 951626--951736 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
951616 GCTTGCGTGA
* ** *
951626 GTAAAGTAATTGTTGCTTGTGTGAGTAAAGTAAGTGATGGTTGTGCAAGTAAACTTGG
1 GTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGATGCTTGTGCAAGTAAACTTGG
* *
951684 GTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCTAGTAAA
1 GTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGATGCTTGTGCAAGTAAA
951737 TCTGGTGTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.34
Consensus pattern (58 bp):
GTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGATGCTTGTGCAAGTAAACTTGG
Found at i:951716 original size:24 final size:24
Alignment explanation
Indices: 951684--951861 Score: 137
Period size: 24 Copynumber: 7.5 Consensus size: 24
951674 GTAAACTTGG
*
951684 GTAAAGTAAGTGTTGCTTGTGCCA
1 GTAAAGTAAGTGTTGCTTGTGCTA
951708 GTAAAGTAAGTGTTGCTTGTGCTA
1 GTAAAGTAAGTGTTGCTTGTGCTA
** * * *
951732 GTAAA-TCTGGTGTTGCTTTTTCTT
1 GTAAAGT-AAGTGTTGCTTGTGCTA
** *
951756 GTCGAGTAAGTGTTGCTTGTTCTA
1 GTAAAGTAAGTGTTGCTTGTGCTA
* * ** *
951780 GTAAA-TCTAGTGTTGCTTTTTTTT
1 GTAAAGT-AAGTGTTGCTTGTGCTA
** *
951804 GTCGAGTAAGTGTTGCTTGTGCCA
1 GTAAAGTAAGTGTTGCTTGTGCTA
* * *
951828 ATAAAGTAAGTGTTGCTTGTTCTT
1 GTAAAGTAAGTGTTGCTTGTGCTA
951852 GT-AAGTAAGT
1 GTAAAGTAAGT
951862 AGTGTTTTCC
Statistics
Matches: 117, Mismatches: 33, Indels: 9
0.74 0.21 0.06
Matches are distributed among these distances:
23 10 0.09
24 105 0.90
25 2 0.02
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.43
Consensus pattern (24 bp):
GTAAAGTAAGTGTTGCTTGTGCTA
Found at i:951735 original size:130 final size:130
Alignment explanation
Indices: 951423--951736 Score: 457
Period size: 130 Copynumber: 2.4 Consensus size: 130
951413 TGCTTGTGCC
*
951423 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAATTAAGTGTTGC
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGC
* * * *
951488 TTGTGCCAGTAAAGTTAGTGTTGCTTGTGTGAGTAATGTAAAAAATGGCTGTGCTAGTAAACTTG
66 TTGCGCCAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAACTTG
* * ** *
951553 ATTAAAGTAAGTGTTGCTTGTGCCAGTTAAGTAAGTGTTGCTCATGCCAGTAAAGTAATTGTTGC
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGC
** * *** *
951618 TTGCGTGAGTAAAGTAATTGTTGCTTGTGTGAGTAAAGTAAGTGATGGTTGTGCAAGTAAACTTG
66 TTGCGCCAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAACTTG
* *
951683 GGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCTAGTAAA
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAA
951737 TCTGGTGTTG
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
130 161 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (130 bp):
AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGC
TTGCGCCAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAACTTG
Found at i:951784 original size:130 final size:128
Alignment explanation
Indices: 951423--951775 Score: 424
Period size: 130 Copynumber: 2.7 Consensus size: 128
951413 TGCTTGTGCC
951423 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAATTAAGTGTTGC
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAATT--GTGTTGC
* * * * *
951488 TTGTGCCAGTAAAGTTAGTGTTGCTTGTGTGAGTAATGTAAAAAATGGCTGTGCTAGTAAACTTG
64 TTTTGCTAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAACTTG
* * **
951553 ATTAAAGTAAGTGTTGCTTGTGCCAGTTAAGTAAGTGTTGCTCATGCCAGTAAAGTAAT-TGTTG
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAA-T--TGTGTTG
* *** *
951617 C--TTGCGTGAGTAAAGTAATTGTTGCTTGTGTGAGTAAAGTAAGTGATGGTTGTGCAAGTAAAC
63 CTTTTGC-T-AGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAAC
951680 TTG
126 TTG
* *
951683 GGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCTAGTAAATCTGGTGTTGC
1 AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAAT-T-GTGTTGC
* * **
951748 TTTTTCTTGTCGAGTAAGTGTTGCTTGT
64 TTTTGCTAGTAAAGTAAGTGTTGCTTGT
951776 TCTAGTAAAT
Statistics
Matches: 188, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
128 4 0.02
129 1 0.01
130 177 0.94
131 2 0.01
132 3 0.02
133 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.37
Consensus pattern (128 bp):
AGTAAAGTAAGTGTTGCTTGTGCCAGTAAAGTAAGTGTTGCTTGTGCCAGTAAATTGTGTTGCTT
TTGCTAGTAAAGTAAGTGTTGCTTGTGTGAGTAAAGTAAAAAATGGCTGTGCAAGTAAACTTG
Found at i:960592 original size:13 final size:13
Alignment explanation
Indices: 960574--960606 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
960564 AAACAAACAA
960574 ACAAACAATTAAG
1 ACAAACAATTAAG
960587 ACAAACAATTAAG
1 ACAAACAATTAAG
960600 ACAAACA
1 ACAAACA
960607 CACGGCAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.64, C:0.18, G:0.06, T:0.12
Consensus pattern (13 bp):
ACAAACAATTAAG
Found at i:967922 original size:15 final size:16
Alignment explanation
Indices: 967902--967939 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
967892 CAAGGAAAAT
967902 TTGAGATTGGGGAA-G
1 TTGAGATTGGGGAAGG
*
967917 TTGAGATTGGGTAAGG
1 TTGAGATTGGGGAAGG
967933 TTGAGAT
1 TTGAGAT
967940 AAGCAAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.26, C:0.00, G:0.42, T:0.32
Consensus pattern (16 bp):
TTGAGATTGGGGAAGG
Found at i:968924 original size:2 final size:2
Alignment explanation
Indices: 968917--968956 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
968907 TGAATAATTC
**
968917 AG AG AG AG AG AG AG AG AG AG AG AG AG CT AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
968957 TTGTTGAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.47, T:0.03
Consensus pattern (2 bp):
AG
Found at i:973645 original size:34 final size:34
Alignment explanation
Indices: 973602--973670 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
973592 GAACTTAATG
973602 GTAAAAGACCTGTGTGACTGTCTCATCATAAATT
1 GTAAAAGACCTGTGTGACTGTCTCATCATAAATT
*
973636 GTAAAAGACCTGTGTGACTGTCTTATCATAAATT
1 GTAAAAGACCTGTGTGACTGTCTCATCATAAATT
973670 G
1 G
973671 AACTGTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (34 bp):
GTAAAAGACCTGTGTGACTGTCTCATCATAAATT
Found at i:975468 original size:406 final size:405
Alignment explanation
Indices: 974715--975526 Score: 1615
Period size: 406 Copynumber: 2.0 Consensus size: 405
974705 AATTGAATGT
974715 AAATTTACAAAAAATGCAGACTAAACCTGTATTTGGTTGACAAAAATTAATTTAATATTAATTTC
1 AAATTTACAAAAAATGCAGACTAAACCTGTATTTGGTTGACAAAAATTAATTTAATATTAATTTC
974780 ATTCAAATCACAAACATCTGTAATTGATGATTTTTGAAAACAAAACACTTACCGGTAATTTTTTG
66 ATTCAAATCACAAACATCTGTAATTGATGATTTTTGAAAACAAAACACTTACCGGTAATTTTTTG
974845 ATCAGCAGAACCATTTCAACTCGATCTTCTCCACAAGAGCAAAACGTTGATGATTAAGGTACCAG
131 ATCAGCAGAACCATTTCAACTCGATCTTCTCCACAAGAGCAAAACGTTGATGATTAAGGTACCAG
974910 TATACAGAATACATTAGGCAGATGAGTAGTAGAATTGTACACATTAATGTAACTTGATCCTATAT
196 TATACAGAATACATTAGGCAGATGAGTAGTAGAATTGTACACATTAATGTAACTTGATCCTATAT
974975 TAGATAATATTTCATGTTAAATACAGACACTGGTAATACTTCTTAGAACCCTATAGATAAATAGA
261 TAGATAATATTTCATGTTAAATACAGACACTGGTAATACTTCTTAGAACCCTATAGATAAATAGA
975040 TAAACATCCTTAACATTTGCAAACATCAAAGCTTCCAACTTCCAACGAATAGAAAAAACTGGTAG
326 TAAACATCCTTAACATTTGCAAACATCAAAGCTTCCAACTTCCAACGAATAGAAAAAACTGGTAG
975105 GCATTATTAATCATA
391 GCATTATTAATCATA
975120 ANAATTTACAAAAAATGCAGACTAAACCTGTATTTGGTTGACAAAAATTAATTTAATATTAATTT
1 A-AATTTACAAAAAATGCAGACTAAACCTGTATTTGGTTGACAAAAATTAATTTAATATTAATTT
975185 CATTCAAATCACAAACATCTGTAATTGATGATTTTTGAAAACAAAACACTTACCGGTAATTTTTT
65 CATTCAAATCACAAACATCTGTAATTGATGATTTTTGAAAACAAAACACTTACCGGTAATTTTTT
975250 GATCAGCAGAACCATTTCAACTCGATCTTCTCCACAAGAGCAAAACGTTGATGATTAAGGTACCA
130 GATCAGCAGAACCATTTCAACTCGATCTTCTCCACAAGAGCAAAACGTTGATGATTAAGGTACCA
975315 GTATACAGAATACATTAGGCAGATGAGTAGTAGAATTGTACACATTAATGTAACTTGATCCTATA
195 GTATACAGAATACATTAGGCAGATGAGTAGTAGAATTGTACACATTAATGTAACTTGATCCTATA
975380 TTAGATAATATTTCATGTTAAATACAGACACTGGTAATACTTCTTAGAACCCTATAGATAAATAG
260 TTAGATAATATTTCATGTTAAATACAGACACTGGTAATACTTCTTAGAACCCTATAGATAAATAG
975445 ATAAACATCCTTAACATTTGCAAACATCAAAGCTTCCAACTTCCAACGAATAGAAAAAACTGGTA
325 ATAAACATCCTTAACATTTGCAAACATCAAAGCTTCCAACTTCCAACGAATAGAAAAAACTGGTA
975510 GGCATTATTAATCATA
390 GGCATTATTAATCATA
975526 A
1 A
975527 GGTCAAACAA
Statistics
Matches: 406, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
405 1 0.00
406 405 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (405 bp):
AAATTTACAAAAAATGCAGACTAAACCTGTATTTGGTTGACAAAAATTAATTTAATATTAATTTC
ATTCAAATCACAAACATCTGTAATTGATGATTTTTGAAAACAAAACACTTACCGGTAATTTTTTG
ATCAGCAGAACCATTTCAACTCGATCTTCTCCACAAGAGCAAAACGTTGATGATTAAGGTACCAG
TATACAGAATACATTAGGCAGATGAGTAGTAGAATTGTACACATTAATGTAACTTGATCCTATAT
TAGATAATATTTCATGTTAAATACAGACACTGGTAATACTTCTTAGAACCCTATAGATAAATAGA
TAAACATCCTTAACATTTGCAAACATCAAAGCTTCCAACTTCCAACGAATAGAAAAAACTGGTAG
GCATTATTAATCATA
Found at i:976203 original size:24 final size:24
Alignment explanation
Indices: 975971--976198 Score: 320
Period size: 24 Copynumber: 9.7 Consensus size: 24
975961 ATCTATGATC
975971 GATATCTATTGTTATACAGCAATT
1 GATATCTATTGTTATACAGCAATT
*
975995 GATATCTATTGTTATACAGCAATC
1 GATATCTATTGTTATACAGCAATT
976019 GATATCTATTGTTATACAGCAATT
1 GATATCTATTGTTATACAGCAATT
*
976043 GATATCTATTGTTATACAGCAACT
1 GATATCTATTGTTATACAGCAATT
976067 GATATCTATTGTTATACAGCAATT
1 GATATCTATTGTTATACAGCAATT
976091 GATATCTATTGTTATACAGCAATT
1 GATATCTATTGTTATACAGCAATT
**
976115 GATATCTATT-TT-T--AGGGATT
1 GATATCTATTGTTATACAGCAATT
* * * *
976135 GATATCTATTGTTATATATCTATC
1 GATATCTATTGTTATACAGCAATT
* * * *
976159 AATATCTACTGTTATATAGCGATT
1 GATATCTATTGTTATACAGCAATT
976183 GATATCTATTGTTATA
1 GATATCTATTGTTATA
976199 TAGCGCCTCA
Statistics
Matches: 183, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.08
21 2 0.01
22 2 0.01
23 2 0.01
24 162 0.89
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (24 bp):
GATATCTATTGTTATACAGCAATT
Found at i:978545 original size:4 final size:4
Alignment explanation
Indices: 978536--978585 Score: 75
Period size: 4 Copynumber: 12.8 Consensus size: 4
978526 AAGGTTTACA
* *
978536 GACG GACG GACA GACA GACG GACG GACG GACG GACG GACG GAC- GACG
1 GACG GACG GACG GACG GACG GACG GACG GACG GACG GACG GACG GACG
978583 GAC
1 GAC
978586 AACGGGTGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 3 0.07
4 40 0.93
ACGTcount: A:0.30, C:0.26, G:0.44, T:0.00
Consensus pattern (4 bp):
GACG
Found at i:980393 original size:25 final size:25
Alignment explanation
Indices: 980353--980629 Score: 491
Period size: 25 Copynumber: 11.1 Consensus size: 25
980343 AAAACAGACA
980353 CATGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
* *
980378 CTTGATGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
980403 CATGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
*
980428 CATGACGTCTTGTATGTGTAAATGC
1 CATGACGTCTTGTATGTGTTAATGC
*
980453 CTTGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
980478 CATGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
980503 CATGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
*
980528 CATGATGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
*
980553 CATGACGTCTTGTATGTGTTAATAC
1 CATGACGTCTTGTATGTGTTAATGC
980578 CATGACGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
*
980603 CATGATGTCTTGTATGTGTTAATGC
1 CATGACGTCTTGTATGTGTTAATGC
980628 CA
1 CA
980630 GCATCCTACC
Statistics
Matches: 239, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 239 1.00
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.41
Consensus pattern (25 bp):
CATGACGTCTTGTATGTGTTAATGC
Found at i:983496 original size:161 final size:161
Alignment explanation
Indices: 983297--983762 Score: 700
Period size: 161 Copynumber: 2.9 Consensus size: 161
983287 AAATGAATGT
* ** * * *
983297 AAACTGTAAATATTTGGAATTTTTCTAAGTCAAAGGGCCATAATTCTGTCAAAAATGGCTCAATC
1 AAACTGCAAATAACTGGAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATGGCTCAATC
* *
983362 GTACCCAAAATCGAACTTGACCTAGATATTATCCTGATAAACATGTATACCAAATTTCATTTCAA
66 GTACCCAAAATCGAACTTGACCTAGATATTATCATGATAAACCTGTATACCAAATTTCATTTCAA
*
983427 TATGTTCATCCTCTGCGAAGAAAAAGAGCGG
131 TATGTTCATCCTCTGCAAAGAAAAAGAGCGG
* *
983458 AAACTGCAAATAACTGGAATTTTTCTAAGTCCAAGGGCCATAACTCTGACGAACATGGCTCAATC
1 AAACTGCAAATAACTGGAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATGGCTCAATC
* *
983523 GTA-CCAAATATCAAACTTGACCTAAATATTATCATGATAAACCTGTATACCAAATTTCATTTCA
66 GTACCCAAA-ATCGAACTTGACCTAGATATTATCATGATAAACCTGTATACCAAATTTCATTTCA
* *
983587 ATATGTTTATCCTCTGCAAAGAAAATGAGCGG
130 ATATGTTCATCCTCTGCAAAGAAAAAGAGCGG
* * *
983619 AAACTGCAAATAACTGGAATTTTTCTACGTCCAAGGGCCATAACTCTGTTGAAAATGGCTCGATC
1 AAACTGCAAATAACTGGAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATGGCTCAATC
* * * * *
983684 ATACCCAATATGGAACTTGACCTAGTTATTATCATGATAAACCTGTATACCAAATTTCATTTTAA
66 GTACCCAAAATCGAACTTGACCTAGATATTATCATGATAAACCTGTATACCAAATTTCATTTCAA
*
983749 TACGTTCATCCTCT
131 TATGTTCATCCTCT
983763 ATGAAAAAAA
Statistics
Matches: 274, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
160 5 0.02
161 265 0.97
162 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (161 bp):
AAACTGCAAATAACTGGAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATGGCTCAATC
GTACCCAAAATCGAACTTGACCTAGATATTATCATGATAAACCTGTATACCAAATTTCATTTCAA
TATGTTCATCCTCTGCAAAGAAAAAGAGCGG
Found at i:988083 original size:20 final size:20
Alignment explanation
Indices: 988055--988589 Score: 528
Period size: 20 Copynumber: 26.5 Consensus size: 20
988045 CTAGAGCACA
988055 TGCTGTAATAATCTACTAAG
1 TGCTGTAATAATCTACTAAG
* *
988075 TGCTATAATAATCTAC-AACA
1 TGCTGTAATAATCTACTAA-G
* *
988095 TACTGTAATAATCTACTACG
1 TGCTGTAATAATCTACTAAG
**
988115 TGCTGTAATAATCTACTACC
1 TGCTGTAATAATCTACTAAG
*
988135 TGCTGTAATAATCTACTAAA
1 TGCTGTAATAATCTACTAAG
988155 TGCTGTAATAATCTACTACA-
1 TGCTGTAATAATCTACTA-AG
*
988175 TGCTGTAATAATCTA-TCAAA
1 TGCTGTAATAATCTACT-AAG
*
988195 TGCTGTAATAATCTACCACA-
1 TGCTGTAATAATCTACTA-AG
** * *
988215 TTATGTAATAATTTATTAAG
1 TGCTGTAATAATCTACTAAG
*
988235 TGCTGTAATAATCTACCACA-
1 TGCTGTAATAATCTACTA-AG
*
988255 TGCTGTAATAATCTATTAAG
1 TGCTGTAATAATCTACTAAG
* * *
988275 CGGTGTAATACTCTACTAAG
1 TGCTGTAATAATCTACTAAG
* *
988295 TGGTGTAATAATCTACTAAT
1 TGCTGTAATAATCTACTAAG
* *
988315 TGCTGTGATAATCTACCAAG
1 TGCTGTAATAATCTACTAAG
**
988335 TGCTGTAATAATCTACTTTG
1 TGCTGTAATAATCTACTAAG
*
988355 TGCTGTAATAATCTACTACG
1 TGCTGTAATAATCTACTAAG
*
988375 TGCTGTAATAATCTAACTCA-
1 TGCTGTAATAATCT-ACTAAG
** *
988395 TTATGTAATAATCTATTAAG
1 TGCTGTAATAATCTACTAAG
*
988415 TGCTGTAATAATCTACCACA-
1 TGCTGTAATAATCTACTA-AG
988435 TGCTGTAATAATC-ACTAAG
1 TGCTGTAATAATCTACTAAG
* *
988454 TGGTGTAATAAACTACTAAG
1 TGCTGTAATAATCTACTAAG
* *
988474 TGCTGTAATAATTTCCTACAAAA
1 TGCTGTAATAA--T-CTACTAAG
* *
988497 TGCTGTAATAATCTACAAAA
1 TGCTGTAATAATCTACTAAG
* *
988517 TGCTGTAATAATCTACAAAA
1 TGCTGTAATAATCTACTAAG
* *
988537 TGCTGTAATAATCTCCTACAAAA
1 TGCTGTAATAA--T-CTACTAAG
*
988560 TGCTGTAATAATCTACTACG
1 TGCTGTAATAATCTACTAAG
988580 TGCTGTAATA
1 TGCTGTAATA
988590 TTCTCCTACA
Statistics
Matches: 434, Mismatches: 60, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
18 1 0.00
19 23 0.05
20 363 0.84
21 10 0.02
22 1 0.00
23 36 0.08
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (20 bp):
TGCTGTAATAATCTACTAAG
Found at i:991633 original size:58 final size:58
Alignment explanation
Indices: 990940--991632 Score: 1223
Period size: 58 Copynumber: 12.0 Consensus size: 58
990930 TCCACTGATT
*
990940 TCCTTATCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
* * *
990998 TTCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACTCAGGCCTAGGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
* *
991056 TCCTTACCCTCTCAGAATTAGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
*
991114 TCCTTACCCTCTCAGCATTGGGAGAT---AATGTCTCTATACACAAGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
991169 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
* * *
991227 TTCTTACCCTCTAAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAGGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
991285 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
*
991343 TTCC-TACCCTCTCAGCATTGGGATATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 -TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
991401 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
*
991459 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTGTACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
991517 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
* *
991575 CCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTGTACACAGGCCTAAGCTCTG
1 TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
991633 CTGGAAGTCC
Statistics
Matches: 605, Mismatches: 25, Indels: 10
0.95 0.04 0.02
Matches are distributed among these distances:
55 54 0.09
57 3 0.00
58 545 0.90
59 3 0.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (58 bp):
TCCTTACCCTCTCAGCATTGGGAGATAAGAATGTCTCTATACACAGGCCTAAGCTCTG
Found at i:1000126 original size:23 final size:22
Alignment explanation
Indices: 1000093--1000141 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
1000083 CAAGGGTAAT
* *
1000093 AATGTGATGTCATAATGCATTC
1 AATGTGATGTCACAATGCATTA
1000115 AATGTGGATGTCACAATGCATTA
1 AATGT-GATGTCACAATGCATTA
1000138 AATG
1 AATG
1000142 CATAAATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (22 bp):
AATGTGATGTCACAATGCATTA
Found at i:1003391 original size:4 final size:4
Alignment explanation
Indices: 1003374--1003437 Score: 76
Period size: 4 Copynumber: 15.8 Consensus size: 4
1003364 TGAAATTACA
* *
1003374 TTTG TTTT TTTG TTTG TTT- TTGG TTTTG TTTG TTTG TTTTG TTTG TTTG
1 TTTG TTTG TTTG TTTG TTTG TTTG -TTTG TTTG TTTG -TTTG TTTG TTTG
*
1003423 TTTG TTTT TTTG TTT
1 TTTG TTTG TTTG TTT
1003438 TTTAGCTTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
3 2 0.04
4 42 0.82
5 7 0.14
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (4 bp):
TTTG
Found at i:1003448 original size:33 final size:33
Alignment explanation
Indices: 1003382--1003448 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
1003372 CATTTGTTTT
*
1003382 TTTGTTTGTTTTTGGTTTTGTTTGTTTGTTTTG
1 TTTGTTTGTTTTTGGTTTTGTTTGTTTGCTTTG
*
1003415 TTTGTTTGTTTGTT-TTTTTGTTT-TTTAGCTTTG
1 TTTGTTTGTTT-TTGGTTTTGTTTGTTT-GCTTTG
1003448 T
1 T
1003449 CACTGGATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 3 0.10
33 25 0.83
34 2 0.07
ACGTcount: A:0.01, C:0.01, G:0.21, T:0.76
Consensus pattern (33 bp):
TTTGTTTGTTTTTGGTTTTGTTTGTTTGCTTTG
Found at i:1009797 original size:47 final size:47
Alignment explanation
Indices: 1009745--1009840 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
1009735 GGGAATATCT
1009745 TTCAAAGGGCTGGCTAACACCCTGTATCCCATATTTGGGCCTTAATA
1 TTCAAAGGGCTGGCTAACACCCTGTATCCCATATTTGGGCCTTAATA
1009792 TTCAAAGGGCTGGCTAACACCCTGTATCCCATATTTGGGCCTTAATA
1 TTCAAAGGGCTGGCTAACACCCTGTATCCCATATTTGGGCCTTAATA
1009839 TT
1 TT
1009841 TGGGATTTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (47 bp):
TTCAAAGGGCTGGCTAACACCCTGTATCCCATATTTGGGCCTTAATA
Found at i:1011095 original size:34 final size:34
Alignment explanation
Indices: 1011052--1011121 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
1011042 TTTGAACAAT
* * *
1011052 AAACGATATAAATTATTTTTTGTTCTCTTTCTAA
1 AAACGATATAAATTATTATTTGTTATCTTTCGAA
1011086 AAACGATATAAATTATTATTTGTTATCTTTCGAA
1 AAACGATATAAATTATTATTTGTTATCTTTCGAA
1011120 AA
1 AA
1011122 TTGATTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (34 bp):
AAACGATATAAATTATTATTTGTTATCTTTCGAA
Found at i:1015258 original size:13 final size:13
Alignment explanation
Indices: 1015242--1015268 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1015232 TCCTTAGTAA
1015242 TATTCCAAGACAT
1 TATTCCAAGACAT
1015255 TATTCCAAGACAT
1 TATTCCAAGACAT
1015268 T
1 T
1015269 TAAAACGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TATTCCAAGACAT
Found at i:1017514 original size:15 final size:15
Alignment explanation
Indices: 1017496--1017586 Score: 59
Period size: 15 Copynumber: 5.9 Consensus size: 15
1017486 ATACAAAATT
1017496 ATATATTACAATATC
1 ATATATTACAATATC
*
1017511 ATATAATACAATATC
1 ATATATTACAATATC
1017526 ATGTGATATAATA-ATATATC
1 A--T-ATAT--TACA-ATATC
1017546 ATAGTA-TACAATAT-
1 ATA-TATTACAATATC
1017560 AT-TA-TACAATATC
1 ATATATTACAATATC
1017573 ATAT-TATACAATAT
1 ATATAT-TACAATAT
1017587 TGTTTGTACG
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
12 10 0.16
13 2 0.03
14 3 0.05
15 29 0.47
16 1 0.02
17 2 0.03
18 6 0.10
19 1 0.02
20 8 0.13
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.38
Consensus pattern (15 bp):
ATATATTACAATATC
Found at i:1017558 original size:20 final size:20
Alignment explanation
Indices: 1017521--1017558 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1017511 ATATAATACA
*
1017521 ATATCATGTGATATAATAAT
1 ATATCATGTGATACAATAAT
1017541 ATATCATAGT-ATACAATA
1 ATATCAT-GTGATACAATA
1017559 TATTATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (20 bp):
ATATCATGTGATACAATAAT
Found at i:1017833 original size:20 final size:20
Alignment explanation
Indices: 1017805--1017858 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
1017795 CTTTTGATAT
* *
1017805 AATATTGTATCATATTAAAC
1 AATACTGTATCATATCAAAC
* *
1017825 AATAGTGTATCATATCATAC
1 AATACTGTATCATATCAAAC
*
1017845 AATACTATATCATA
1 AATACTGTATCATA
1017859 GGAATCATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (20 bp):
AATACTGTATCATATCAAAC
Found at i:1033261 original size:2 final size:2
Alignment explanation
Indices: 1033254--1033288 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1033244 ACATACATAC
1033254 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1033289 CATAAGACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1033880 original size:43 final size:43
Alignment explanation
Indices: 1033819--1033905 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
1033809 CTTGATGCAT
1033819 ATAATGATTAACATTGCCGATAGAAAAAAAGACATAGAACTGA
1 ATAATGATTAACATTGCCGATAGAAAAAAAGACATAGAACTGA
1033862 ATAATGATTAACATTGCCGATAGAAAAAAAGACATAGAACTGA
1 ATAATGATTAACATTGCCGATAGAAAAAAAGACATAGAACTGA
1033905 A
1 A
1033906 ATAACATGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.21
Consensus pattern (43 bp):
ATAATGATTAACATTGCCGATAGAAAAAAAGACATAGAACTGA
Found at i:1052103 original size:44 final size:44
Alignment explanation
Indices: 1052036--1052464 Score: 691
Period size: 44 Copynumber: 9.8 Consensus size: 44
1052026 NNNNNNNNNN
*
1052036 CGTTACGGCCTTTGATATTAACTGCTGACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
*
1052080 CGTGACGGCCCTTGATATTAACTG-TGAACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTG-ACTGATTTGTTATCATC
*
1052124 CGTTACAGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
* *
1052168 CGTTACGGCCCTTGATATTAATTGCTGACTGATTTGTTATTATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
1052212 CGTTACGGCCCTTGATATTAACTG-TGAACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTG-ACTGATTTGTTATCATC
*
1052256 CGTTACAGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
1052300 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
* *
1052344 CGTTACGGCCCTTGATATTAATTGCTGACTGATTTGTTATTATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
* *
1052388 CGTTACGGCCCTTGATATTTACTGCTGACTGATTTGTTATTATC
1 CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
* * * * *
1052432 TGTTACGGCCCGTGATATCAACTGTTGGCTGAT
1 CGTTACGGCCCTTGATATTAACTGCTGACTGAT
1052465 CCCTACTTTG
Statistics
Matches: 360, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
43 4 0.01
44 352 0.98
45 4 0.01
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (44 bp):
CGTTACGGCCCTTGATATTAACTGCTGACTGATTTGTTATCATC
Found at i:1054426 original size:2 final size:2
Alignment explanation
Indices: 1054419--1054488 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
1054409 AGACTGAAAA
1054419 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1054461 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1054489 ATATGCTTTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Done.