Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold885
Parameters: 2 7 7 80 10 50 500
Length:  1053811

Tables:   1   2   3   

This is table  3  of  3  ( 264 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
968871--969296
106
4.0
106
98
0
816
34
11
19
34
1.87
976490--976646
38
4.1
38
100
0
314
35
20
15
29
1.93
977322--977657
63
5.4
62
80
4
347
40
14
19
25
1.89
977322--977661
186
1.8
188
81
6
422
40
14
19
25
1.89
980142--980200
4
14.8
4
100
0
118
23
25
0
50
1.49
982196--982252
17
3.4
17
92
0
96
35
19
10
35
1.86
990619--990679
22
2.8
22
78
9
70
18
24
14
42
1.88
991090--991120
2
15.5
2
100
0
62
0
51
0
48
1.00
991204--991510
167
1.8
167
83
2
411
29
18
20
30
1.97
1009826--1009864
20
1.9
20
100
0
78
15
30
33
20
1.94
1009825--1009870
20
2.3
20
88
0
74
21
26
30
21
1.99
1017140--1017181
12
3.6
12
87
3
59
42
21
30
4
1.73
1025348--1026058
170
4.2
169
89
5
1005
27
24
14
32
1.95
1025347--1026058
337
2.1
334
86
7
1008
27
24
14
32
1.95
1028614--1028934
170
1.9
170
98
0
624
36
11
14
37
1.82
1031522--1031556
17
2.1
17
94
0
61
40
17
25
17
1.90
1032182--1032267
42
2.0
44
90
4
140
37
24
22
16
1.93
1034440--1034481
2
21.0
2
100
0
84
0
50
0
50
1.00
1035638--1035694
25
2.3
25
81
0
78
43
12
14
29
1.81
1035655--1035693
20
1.9
20
94
0
69
46
12
10
30
1.75
1041650--1041685
11
3.3
11
84
0
54
33
2
11
52
1.51
1052651--1052676
2
13.0
2
100
0
52
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1053376--1053425
2
25.0
2
100
0
100
0
50
0
50
1.00
1053771--1053810
2
20.0
2
100
0
80
0
50
0
50
1.00

Tables:   1   2   3

The End!