Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1267
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1050379
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.28
Warning! 150710 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:598445 original size:30 final size:30
Alignment explanation
Indices: 598407--598527 Score: 206
Period size: 30 Copynumber: 4.0 Consensus size: 30
598397 CAAGGACACA
598407 CAGCCGGAGTTATCTCCCCCACAGGAGTCC
1 CAGCCGGAGTTATCTCCCCCACAGGAGTCC
*
598437 CGGCCGGAGTTATCTCCCCCACAGGAGTCC
1 CAGCCGGAGTTATCTCCCCCACAGGAGTCC
* *
598467 AAACCGGAGTTATCTCCCCCACAGGAGTCC
1 CAGCCGGAGTTATCTCCCCCACAGGAGTCC
*
598497 CAGCCGGAGTTATCTCCCCCACTGGAGTCC
1 CAGCCGGAGTTATCTCCCCCACAGGAGTCC
598527 C
1 C
598528 GGTTCAAGCT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 84 1.00
ACGTcount: A:0.20, C:0.40, G:0.23, T:0.17
Consensus pattern (30 bp):
CAGCCGGAGTTATCTCCCCCACAGGAGTCC
Found at i:599856 original size:2 final size:2
Alignment explanation
Indices: 599849--599921 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
599839 CTGAATTAGA
599849 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
599891 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
599922 ATGTATGAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:601100 original size:40 final size:40
Alignment explanation
Indices: 601056--601145 Score: 171
Period size: 40 Copynumber: 2.2 Consensus size: 40
601046 AAAGACGTTG
601056 TGGGTGTTTGGCGGTGTTTCATGTATATAGCGGGGGTGGT
1 TGGGTGTTTGGCGGTGTTTCATGTATATAGCGGGGGTGGT
601096 TGGGTGTTTGGCGGTGTTTCATGTATATAGCGGGGGTGGT
1 TGGGTGTTTGGCGGTGTTTCATGTATATAGCGGGGGTGGT
*
601136 TGGGGGTTTG
1 TGGGTGTTTG
601146 TGCATGGACT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.09, C:0.07, G:0.47, T:0.38
Consensus pattern (40 bp):
TGGGTGTTTGGCGGTGTTTCATGTATATAGCGGGGGTGGT
Found at i:601558 original size:27 final size:26
Alignment explanation
Indices: 601509--601565 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
601499 TTGACATAAC
*
601509 TTGACATAAATTAATATCCTATTTAT
1 TTGACATAAATTAATATCCTATTTAG
* *
601535 TTGACATAACTTTAGTATCCTATTTAG
1 TTGACATAA-ATTAATATCCTATTTAG
601562 TTGA
1 TTGA
601566 TATGACAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (26 bp):
TTGACATAAATTAATATCCTATTTAG
Found at i:605242 original size:19 final size:20
Alignment explanation
Indices: 605218--605276 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
605208 CTTCAACATT
* *
605218 AACTCTC-TGCGTCTGCAGA
1 AACTCTCGTACGTATGCAGA
605237 AACTCTCGTTACGTATGCAGA
1 AACTCTCG-TACGTATGCAGA
605258 AACTCTCGTAACGTATGCA
1 AACTCTCGT-ACGTATGCA
605277 TCCATTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.20
20 1 0.03
21 27 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (20 bp):
AACTCTCGTACGTATGCAGA
Found at i:605257 original size:21 final size:21
Alignment explanation
Indices: 605231--605276 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
605221 TCTCTGCGTC
*
605231 TGCAGAAACTCTCGTTACGTA
1 TGCAGAAACTCTCGTAACGTA
605252 TGCAGAAACTCTCGTAACGTA
1 TGCAGAAACTCTCGTAACGTA
605273 TGCA
1 TGCA
605277 TCCATTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (21 bp):
TGCAGAAACTCTCGTAACGTA
Found at i:606041 original size:2 final size:2
Alignment explanation
Indices: 606034--606076 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
606024 CGTAACACCC
606034 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
606076 C
1 C
606077 CAAAACACCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:629592 original size:16 final size:16
Alignment explanation
Indices: 629571--629621 Score: 102
Period size: 16 Copynumber: 3.2 Consensus size: 16
629561 GTGGTAGATA
629571 TCAGTTCACAGATATC
1 TCAGTTCACAGATATC
629587 TCAGTTCACAGATATC
1 TCAGTTCACAGATATC
629603 TCAGTTCACAGATATC
1 TCAGTTCACAGATATC
629619 TCA
1 TCA
629622 TGTCCACAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (16 bp):
TCAGTTCACAGATATC
Found at i:629713 original size:16 final size:16
Alignment explanation
Indices: 629672--629750 Score: 83
Period size: 16 Copynumber: 5.1 Consensus size: 16
629662 ATCTTGATTC
629672 ACTGGTATCTCAATTT
1 ACTGGTATCTCAATTT
**
629688 A-AAG-ATCTCAATTT
1 ACTGGTATCTCAATTT
629702 ACTGGTATCTCAATTT
1 ACTGGTATCTCAATTT
* ** *
629718 ACAGG-ATCTTGATTC
1 ACTGGTATCTCAATTT
629733 ACTGGTATCTCAATTT
1 ACTGGTATCTCAATTT
629749 AC
1 AC
629751 AGACATCACT
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 11 0.23
15 13 0.27
16 24 0.50
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (16 bp):
ACTGGTATCTCAATTT
Found at i:629737 original size:31 final size:31
Alignment explanation
Indices: 629655--629752 Score: 153
Period size: 31 Copynumber: 3.2 Consensus size: 31
629645 CACATGTATC
629655 TTACAGGATCTTGATTCACTGGTATCTCAAT
1 TTACAGGATCTTGATTCACTGGTATCTCAAT
* ** *
629686 TTA-AAGATCTCAATTTACTGGTATCTCAAT
1 TTACAGGATCTTGATTCACTGGTATCTCAAT
629716 TTACAGGATCTTGATTCACTGGTATCTCAAT
1 TTACAGGATCTTGATTCACTGGTATCTCAAT
629747 TTACAG
1 TTACAG
629753 ACATCACTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 26 0.45
31 32 0.55
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (31 bp):
TTACAGGATCTTGATTCACTGGTATCTCAAT
Found at i:630552 original size:8 final size:8
Alignment explanation
Indices: 630539--630618 Score: 114
Period size: 8 Copynumber: 10.5 Consensus size: 8
630529 TAACAGAGAG
630539 AGACAGAC
1 AGACAGAC
630547 AGACAGAC
1 AGACAGAC
630555 AGACAG--
1 AGACAGAC
630561 AGACAGAC
1 AGACAGAC
630569 AGACAGAC
1 AGACAGAC
630577 AGACAGAC
1 AGACAGAC
630585 AGACAG--
1 AGACAGAC
*
630591 AGAGAGAC
1 AGACAGAC
630599 AGACAGAC
1 AGACAGAC
*
630607 AGACAGAG
1 AGACAGAC
630615 AGAC
1 AGAC
630619 CGAGAGTCGC
Statistics
Matches: 65, Mismatches: 3, Indels: 8
0.86 0.04 0.11
Matches are distributed among these distances:
6 11 0.17
8 54 0.83
ACGTcount: A:0.50, C:0.21, G:0.29, T:0.00
Consensus pattern (8 bp):
AGACAGAC
Found at i:630562 original size:22 final size:21
Alignment explanation
Indices: 630538--630623 Score: 108
Period size: 22 Copynumber: 4.2 Consensus size: 21
630528 GTAACAGAGA
630538 GAGACAGACAGACAGACAGAC
1 GAGACAGACAGACAGACAGAC
630559 AGAGACAGACAGACAGACAGAC
1 -GAGACAGACAGACAGACAGAC
*
630581 -AGACAGACAG--AGAGAGAC
1 GAGACAGACAGACAGACAGAC
*
630599 -AGACAGACAGACAGAGAGACC
1 GAGACAGACAGACAGACAGA-C
630620 GAGA
1 GAGA
630624 GTCGCAGTCA
Statistics
Matches: 59, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
18 17 0.29
20 17 0.29
21 1 0.02
22 24 0.41
ACGTcount: A:0.49, C:0.21, G:0.30, T:0.00
Consensus pattern (21 bp):
GAGACAGACAGACAGACAGAC
Found at i:630568 original size:26 final size:26
Alignment explanation
Indices: 630531--630617 Score: 147
Period size: 26 Copynumber: 3.3 Consensus size: 26
630521 TAAATATGTA
630531 ACAGAGAGAGACAGACAGACAGACAG
1 ACAGAGAGAGACAGACAGACAGACAG
*
630557 ACAGAGACAGACAGACAGACAGACAG
1 ACAGAGAGAGACAGACAGACAGACAG
* *
630583 ACAGACAGAGAGAGACAGACAGACAG
1 ACAGAGAGAGACAGACAGACAGACAG
630609 ACAGAGAGA
1 ACAGAGAGA
630618 CCGAGAGTCG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.51, C:0.20, G:0.30, T:0.00
Consensus pattern (26 bp):
ACAGAGAGAGACAGACAGACAGACAG
Found at i:630623 original size:8 final size:8
Alignment explanation
Indices: 630535--630624 Score: 80
Period size: 8 Copynumber: 11.8 Consensus size: 8
630525 TATGTAACAG
630535 AGAGAGAC
1 AGAGAGAC
*
630543 AGACAGAC
1 AGAGAGAC
*
630551 AGACAGAC
1 AGAGAGAC
630559 --AGAGAC
1 AGAGAGAC
*
630565 AGACAGAC
1 AGAGAGAC
*
630573 AGACAGAC
1 AGAGAGAC
*
630581 AGACAGAC
1 AGAGAGAC
630589 AGAGAG--
1 AGAGAGAC
*
630595 AGACAGAC
1 AGAGAGAC
*
630603 AGACAGAC
1 AGAGAGAC
630611 AGAGAGAC
1 AGAGAGAC
*
630619 CGAGAG
1 AGAGAG
630625 TCGCAGTCAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
6 10 0.14
8 61 0.86
ACGTcount: A:0.49, C:0.20, G:0.31, T:0.00
Consensus pattern (8 bp):
AGAGAGAC
Found at i:630624 original size:30 final size:30
Alignment explanation
Indices: 630533--630624 Score: 148
Period size: 30 Copynumber: 3.1 Consensus size: 30
630523 AATATGTAAC
*
630533 AGAGAGAGACAGACAGACAGACAGACAGAG
1 AGAGACAGACAGACAGACAGACAGACAGAG
*
630563 ACAGACAGACAGACAGACAGACAGACAGAG
1 AGAGACAGACAGACAGACAGACAGACAGAG
* *
630593 AGAGACAGACAGACAGACAGAGAGACCGAG
1 AGAGACAGACAGACAGACAGACAGACAGAG
630623 AG
1 AG
630625 TCGCAGTCAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.49, C:0.20, G:0.32, T:0.00
Consensus pattern (30 bp):
AGAGACAGACAGACAGACAGACAGACAGAG
Found at i:632214 original size:28 final size:28
Alignment explanation
Indices: 632174--632775 Score: 723
Period size: 28 Copynumber: 21.2 Consensus size: 28
632164 GGAGAACATC
* *
632174 ATAGACTGTCTACACTACAGGGTGAGTT
1 ATAGACTGTCTACACTACAGAGTGAGTA
**** * *
632202 ATAGACTGTCTACA-GGGTGAGTTAATA
1 ATAGACTGTCTACACTACAGAGTGAGTA
*
632229 TCATAGACTGCCTACACTACAGAGTGAGTA
1 --ATAGACTGTCTACACTACAGAGTGAGTA
* *
632259 ATAGAATGTCTACACTACATG-GCGAGTTCATA
1 ATAGACTGTCTACACTACA-GAGTGAG----TA
*
632291 TCATAGACTGTCTACACTATAGAGTGAGTA
1 --ATAGACTGTCTACACTACAGAGTGAGTA
* *
632321 ATAGACTGTCTACACTACA-AGGTTAGTT
1 ATAGACTGTCTACACTACAGA-GTGAGTA
*
632349 ATAGACTGTCTACACTACAGTGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
632377 ATAGACTGTCTACACTACA-AG-GCTAGTA
1 ATAGACTGTCTACACTACAGAGTG--AGTA
*
632405 ATAGACTGTCTACACTACA-AGGTTAGTA
1 ATAGACTGTCTACACTACAGA-GTGAGTA
*
632433 ATAGACTGTCTACACTACAGTGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
*
632461 ATAGACTGTCTACACTACA-AGGTGAATA
1 ATAGACTGTCTACACTACAGA-GTGAGTA
* *
632489 ATAGACTGTCTACACTACAGGGTGAGTT
1 ATAGACTGTCTACACTACAGAGTGAGTA
632517 ATAGACTGTCTACACTACAGAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
*
632545 ATAGACTGTCTACACTACAGAGTGAATA
1 ATAGACTGTCTACACTACAGAGTGAGTA
632573 ATAGACTGTCTACACTACAGAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* * *
632601 ATAGACTGTCTACATTACAGGGTTAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* *
632629 ATAGACTGTCTACACTATATAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* *
632657 ATAGACTGTCTACACTATATAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* *
632685 ATAGACTGTCTACACTATATAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* *
632713 ATAGACTGTCTACACTATATAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
* *
632741 ATAGACTGTCTACACTATATAGTGAGTA
1 ATAGACTGTCTACACTACAGAGTGAGTA
632769 ATAGACT
1 ATAGACT
632776 ATCCACATTA
Statistics
Matches: 506, Mismatches: 48, Indels: 40
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.00
27 7 0.01
28 450 0.89
29 15 0.03
30 9 0.02
32 2 0.00
33 1 0.00
34 21 0.04
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (28 bp):
ATAGACTGTCTACACTACAGAGTGAGTA
Found at i:635613 original size:2 final size:2
Alignment explanation
Indices: 635598--635629 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
635588 TGTACCAATT
635598 TA TA TA -A TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
635630 CTGGTATTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:636376 original size:31 final size:31
Alignment explanation
Indices: 636315--636974 Score: 947
Period size: 31 Copynumber: 21.4 Consensus size: 31
636305 CAGTAAGTGG
* *
636315 CAGAGAACCAGTCAATAG-A-ATGGGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* *
636344 CAGAGAACCAATCAATAGAACATGAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* * *
636375 CATAGAACCAGTCAACAGAACACTAGTATAAT
1 CAGAGAACCAGTCAATAGAACACGAGTAT-AT
* *
636407 CAGAGAACCAGTCAATAG-A-ATGGGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* * * *
636436 CAGAGAACCAGTCAATAGAATATGGGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* *
636467 CAGAGAACCAGTCAATAG-A-ATGGGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636496 CAGAGAACCAGTCAATAGAACATGAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* *
636527 CAGAGAAACAGTCAATAGAACACAAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636558 CAGAGAACCAGTCAATAGAACACGAGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636589 CAGAGAACCAGTCAATAGAACACGAGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636620 CAGAGAACCAGTCAATAGAACACAAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636651 CAGAGAACCAGTCAATAGAACACGAGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636682 CAGAGAACCAGTCAATAGAACACAAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636713 CAGAGAACCAGTCAATAGAACACGAGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
* *
636744 CAGAGAACCAGTCAAAAGAACACGAGTAGAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
636775 CAGAGAACCAGTCAATAGAACACGAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636806 CATAGAACCAGTCAATAGAACACGAGTATAAT
1 CAGAGAACCAGTCAATAGAACACGAGTAT-AT
* *
636838 CAGAGAACCAGTCAATAGAACACAAGTGTAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
636869 CAGAGAACCAGTCAATAGAACACGAGTATAAT
1 CAGAGAACCAGTCAATAGAACACGAGTAT-AT
* *
636901 CAGAGAACCAGTCAATAGAACACAAGTGTAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636932 CAGAGAACCAGTCAATAGAACATGAGTATAT
1 CAGAGAACCAGTCAATAGAACACGAGTATAT
*
636963 -TGAGAACCAGTC
1 CAGAGAACCAGTC
636975 TGTGGTACAT
Statistics
Matches: 578, Mismatches: 44, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
29 64 0.11
30 20 0.03
31 419 0.72
32 75 0.13
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (31 bp):
CAGAGAACCAGTCAATAGAACACGAGTATAT
Found at i:636812 original size:18 final size:18
Alignment explanation
Indices: 636789--636845 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 18
636779 GAACCAGTCA
636789 ATAGAACACGAGTATATC
1 ATAGAACACGAGTATATC
*
636807 ATAGAAC-C-AGT-CA--
1 ATAGAACACGAGTATATC
636820 ATAGAACACGAGTATAATC
1 ATAGAACACGAGTAT-ATC
*
636839 AGAGAAC
1 ATAGAAC
636846 CAGTCAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 4 0.13
16 3 0.10
17 2 0.07
18 7 0.23
19 6 0.20
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (18 bp):
ATAGAACACGAGTATATC
Found at i:638601 original size:20 final size:20
Alignment explanation
Indices: 638576--639002 Score: 597
Period size: 20 Copynumber: 21.4 Consensus size: 20
638566 NNNNNNNNNN
*
638576 TAAGTACTCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
* *
638596 TAAGTACTCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
638616 TAAGTACCCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
*
638636 TAAGTACCCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
* * *
638656 TAAGTTCTCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
* *
638676 TAAGTACTCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
638696 TTAA-TACCCAGTCACTGATG
1 -TAAGTACCCAGTCACTGATG
* *
638716 GAAGTACCCTGTCACTGATG
1 TAAGTACCCAGTCACTGATG
638736 TAAGTACCCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
638756 TAAGTACCCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
*
638776 TAAGTACTCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
* *
638796 TAAGTACCCAGTCCCTGGTG
1 TAAGTACCCAGTCACTGATG
638816 TTAA-TACCCAGTCACTGATG
1 -TAAGTACCCAGTCACTGATG
* *
638836 TAAGTACCCTGTCATTGATG
1 TAAGTACCCAGTCACTGATG
*
638856 TAAGTACCCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
*
638876 TAAGTACTCAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
*
638896 TAAGTACCCTGTCACTGATG
1 TAAGTACCCAGTCACTGATG
*
638916 TAAGTACCCAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
*
638936 TAAGTACCCTGTCACTGATG
1 TAAGTACCCAGTCACTGATG
** *
638956 TAAGTACTTAGTCACTGGTG
1 TAAGTACCCAGTCACTGATG
*
638976 TAAGTACCTAGTCACTGATG
1 TAAGTACCCAGTCACTGATG
638996 TAAGTAC
1 TAAGTAC
639003 ATAAGTACTT
Statistics
Matches: 365, Mismatches: 38, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
19 5 0.01
20 354 0.97
21 6 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (20 bp):
TAAGTACCCAGTCACTGATG
Found at i:641964 original size:54 final size:54
Alignment explanation
Indices: 641851--642029 Score: 279
Period size: 54 Copynumber: 3.3 Consensus size: 54
641841 TCAAGTCTCA
* *
641851 GGTGAGGGAAAGTGAAGCAAAGGCCTTTGTGAAAAAAAAGTGAATCAAAGGCCCT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTTTGTG-AAAGAAAGTGAATCAAAGGCCCT
* * *
641906 GGTGAGAGAAAGTGAAGCAAAGG-CTCTGGTGAGAGAAAGTGAAGCAAAGGCCCT
1 GGTGAGAGAAAGTGAAGCAAAGGCCT-TTGTGAAAGAAAGTGAATCAAAGGCCCT
*
641960 GGTGAGAGAAAGTGAAGCAAAGGCCTTTGTGAAAGAAAGTGAATCAAAGGCCTT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTTTGTGAAAGAAAGTGAATCAAAGGCCCT
642014 GGTGAGAGAAAGTGAA
1 GGTGAGAGAAAGTGAA
642030 TGGATCAATA
Statistics
Matches: 113, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
54 85 0.75
55 28 0.25
ACGTcount: A:0.39, C:0.11, G:0.34, T:0.16
Consensus pattern (54 bp):
GGTGAGAGAAAGTGAAGCAAAGGCCTTTGTGAAAGAAAGTGAATCAAAGGCCCT
Found at i:642030 original size:27 final size:27
Alignment explanation
Indices: 641851--642029 Score: 243
Period size: 27 Copynumber: 6.6 Consensus size: 27
641841 TCAAGTCTCA
*
641851 GGTGAGGGAAAGTGAAGCAAAGGCCTT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTT
* * * * *
641878 TGTGAAAAAAAAGTGAATCAAAGGCCCT
1 GGTG-AGAGAAAGTGAAGCAAAGGCCTT
641906 GGTGAGAGAAAGTGAAGCAAAGG-CTCT
1 GGTGAGAGAAAGTGAAGCAAAGGCCT-T
*
641933 GGTGAGAGAAAGTGAAGCAAAGGCCCT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTT
641960 GGTGAGAGAAAGTGAAGCAAAGGCCTT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTT
* * *
641987 TGTGAAAGAAAGTGAATCAAAGGCCTT
1 GGTGAGAGAAAGTGAAGCAAAGGCCTT
642014 GGTGAGAGAAAGTGAA
1 GGTGAGAGAAAGTGAA
642030 TGGATCAATA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 108 0.82
28 22 0.17
ACGTcount: A:0.39, C:0.11, G:0.34, T:0.16
Consensus pattern (27 bp):
GGTGAGAGAAAGTGAAGCAAAGGCCTT
Found at i:643743 original size:42 final size:42
Alignment explanation
Indices: 643667--643755 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
643657 TTATTGTGCC
* *
643667 CAAATGTCAAGAACTTTAGGTCAGCTATCAAGGAATAAAGGT
1 CAAATGTCAAGAACTTTAGGTAAGATATCAAGGAATAAAGGT
643709 CAAATGTCAAGAACTATT-GGTAAGATAT-ACAGGAATAAAGGT
1 CAAATGTCAAGAACT-TTAGGTAAGATATCA-AGGAATAAAGGT
643751 CAAAT
1 CAAAT
643756 ACCAAGTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 1 0.02
42 40 0.93
43 2 0.05
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (42 bp):
CAAATGTCAAGAACTTTAGGTAAGATATCAAGGAATAAAGGT
Found at i:645032 original size:10 final size:10
Alignment explanation
Indices: 645010--645064 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
645000 CTTCAGTATT
645010 CAGCATA-TA
1 CAGCATACTA
645019 CAGCATACTA
1 CAGCATACTA
645029 CAGCATAC-A
1 CAGCATACTA
* *
645038 -ACCATACTG
1 CAGCATACTA
*
645047 CAGCATACCA
1 CAGCATACTA
645057 CAGCATAC
1 CAGCATAC
645065 ACTGCTACTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
8 6 0.16
9 8 0.21
10 24 0.63
ACGTcount: A:0.40, C:0.33, G:0.11, T:0.16
Consensus pattern (10 bp):
CAGCATACTA
Found at i:645939 original size:21 final size:21
Alignment explanation
Indices: 645915--646192 Score: 259
Period size: 21 Copynumber: 13.6 Consensus size: 21
645905 ATCCTTGCCC
*
645915 AACAAGCAATATTCCTGCCAG
1 AACAAACAATATTCCTGCCAG
* * *
645936 AACATACATTA-TCTCTACCAG
1 AACAAACAATATTC-CTGCCAG
* * * *
645957 TACAAACAATATCCCAGTCAG
1 AACAAACAATATTCCTGCCAG
* *
645978 CACAAACAATATTCCTGCC-C
1 AACAAACAATATTCCTGCCAG
*
645998 AACAAACAATATTCCTGCC-C
1 AACAAACAATATTCCTGCCAG
*
646018 AACAAACAATATTCCTGCC-C
1 AACAAACAATATTCCTGCCAG
646038 AACAAACAATATTCCTGCCAG
1 AACAAACAATATTCCTGCCAG
* *
646059 AACATACAATATTCCTACCAG
1 AACAAACAATATTCCTGCCAG
* * *
646080 AACATACATTA-TCTCTACCAG
1 AACAAACAATATTC-CTGCCAG
* *
646101 TACAAACAATATCCCTGCCAG
1 AACAAACAATATTCCTGCCAG
* *
646122 TACAAAC--TATTCCTGCC-C
1 AACAAACAATATTCCTGCCAG
*
646140 AACAAACAATATTCCTGCC-C
1 AACAAACAATATTCCTGCCAG
*
646160 AACAAACAATATTCCTGCCAA
1 AACAAACAATATTCCTGCCAG
*
646181 AACATACAATAT
1 AACAAACAATAT
646193 CTTAGTCCTA
Statistics
Matches: 218, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
18 6 0.03
19 9 0.04
20 92 0.42
21 109 0.50
22 2 0.01
ACGTcount: A:0.40, C:0.31, G:0.06, T:0.22
Consensus pattern (21 bp):
AACAAACAATATTCCTGCCAG
Found at i:646004 original size:20 final size:20
Alignment explanation
Indices: 645979--646232 Score: 234
Period size: 20 Copynumber: 12.6 Consensus size: 20
645969 CCCAGTCAGC
645979 ACAAACAATATTCCTGCCCA
1 ACAAACAATATTCCTGCCCA
645999 ACAAACAATATTCCTGCCCA
1 ACAAACAATATTCCTGCCCA
646019 ACAAACAATATTCCTGCCCA
1 ACAAACAATATTCCTGCCCA
*
646039 ACAAACAATATTCCTGCCAGA
1 ACAAACAATATTCCTGCC-CA
* * *
646060 ACATACAATATTCCTACCAGA
1 ACAAACAATATTCCTGCC-CA
* * *
646081 ACATACATTA-TCTCT-ACCA
1 ACAAACAATATTC-CTGCCCA
*
646100 GTACAAACAATATCCCTG-CCA
1 --ACAAACAATATTCCTGCCCA
646121 GTACAAAC--TATTCCTGCCCA
1 --ACAAACAATATTCCTGCCCA
646141 ACAAACAATATTCCTGCCCA
1 ACAAACAATATTCCTGCCCA
*
646161 ACAAACAATATTCCTGCCAAA
1 ACAAACAATATTCCTGCC-CA
* * * *
646182 ACATACAATA-TCTTAGTCCT
1 ACAAACAATATTCCT-GCCCA
* *
646202 ACAAACAATA-TCCTAGTCCT
1 ACAAACAATATTCCT-GCCCA
646222 ACAAACAATAT
1 ACAAACAATAT
646233 CTTTGACATA
Statistics
Matches: 204, Mismatches: 18, Indels: 23
0.83 0.07 0.09
Matches are distributed among these distances:
18 6 0.03
19 8 0.04
20 125 0.61
21 64 0.31
22 1 0.00
ACGTcount: A:0.41, C:0.31, G:0.06, T:0.23
Consensus pattern (20 bp):
ACAAACAATATTCCTGCCCA
Found at i:646490 original size:20 final size:20
Alignment explanation
Indices: 646186--646509 Score: 212
Period size: 20 Copynumber: 16.4 Consensus size: 20
646176 GCCAAAACAT
* *
646186 ACAATATCTTAGTCCTACAA
1 ACAATATCTTTGCCCTACAA
* * *
646206 ACAATATCCTAGTCCTACAA
1 ACAATATCTTTGCCCTACAA
* *
646226 ACAATATCTTTGACATACAA
1 ACAATATCTTTGCCCTACAA
*** * * *
646246 ACCCCATCTTTGCCTTTCAG
1 ACAATATCTTTGCCCTACAA
*
646266 ACAATAT-TCCTGCCCTTA-AA
1 ACAATATCT-TTGCCC-TACAA
* * *
646286 GCAATA-CTCATG-TCTAACAA
1 ACAATATCT-TTGCCCT-ACAA
* *
646306 ACATTAGCTTTGCCCTACAA
1 ACAATATCTTTGCCCTACAA
* * *
646326 ACAATTTATTTGCCCAACAA
1 ACAATATCTTTGCCCTACAA
646346 AC-ATA--TTTGCCCTACAA
1 ACAATATCTTTGCCCTACAA
* *
646363 ACAATATATTTGCCATACAA
1 ACAATATCTTTGCCCTACAA
*
646383 ACCATATCTTTGCCCTACAA
1 ACAATATCTTTGCCCTACAA
*
646403 ACAATATATTTGCCCTACAA
1 ACAATATCTTTGCCCTACAA
* *
646423 ACCATATCTTTGCCTTACAA
1 ACAATATCTTTGCCCTACAA
* * * *
646443 ACAACATATTTGCTCTATAA
1 ACAATATCTTTGCCCTACAA
* * *
646463 ACATTATCTTTGCCTTACAG
1 ACAATATCTTTGCCCTACAA
** * *
646483 ACAATATCCCTGTCCTACAG
1 ACAATATCTTTGCCCTACAA
646503 ACAATAT
1 ACAATAT
646510 TCCTGTCCTA
Statistics
Matches: 234, Mismatches: 60, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
17 13 0.06
18 4 0.02
19 5 0.02
20 207 0.88
21 5 0.02
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.31
Consensus pattern (20 bp):
ACAATATCTTTGCCCTACAA
Found at i:646514 original size:20 final size:20
Alignment explanation
Indices: 646478--646521 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
646468 ATCTTTGCCT
646478 TACAGACAATATCCCTGTCC
1 TACAGACAATATCCCTGTCC
*
646498 TACAGACAATATTCCTGTCC
1 TACAGACAATATCCCTGTCC
646518 TACA
1 TACA
646522 AAGAATACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.27
Consensus pattern (20 bp):
TACAGACAATATCCCTGTCC
Found at i:646528 original size:20 final size:20
Alignment explanation
Indices: 646478--646528 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
646468 ATCTTTGCCT
*
646478 TACAGACAATATCCCTGTCC
1 TACAAACAATATCCCTGTCC
* *
646498 TACAGACAATATTCCTGTCC
1 TACAAACAATATCCCTGTCC
*
646518 TACAAAGAATA
1 TACAAACAATA
646529 CTCATGTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.25
Consensus pattern (20 bp):
TACAAACAATATCCCTGTCC
Found at i:646536 original size:20 final size:20
Alignment explanation
Indices: 646493--646545 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
646483 ACAATATCCC
* * *
646493 TGTCCTACAGACAATATTCC
1 TGTCCTACAAACAATACTCA
*
646513 TGTCCTACAAAGAATACTCA
1 TGTCCTACAAACAATACTCA
646533 TGT-CTAACAAACA
1 TGTCCT-ACAAACA
646546 TTTTGTTTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.26
Consensus pattern (20 bp):
TGTCCTACAAACAATACTCA
Found at i:650328 original size:35 final size:35
Alignment explanation
Indices: 650279--650505 Score: 409
Period size: 35 Copynumber: 6.5 Consensus size: 35
650269 TAATACCTTA
650279 AGGACTGTTTGATTTAAAATGACAATATGATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
* *
650314 AGAACTGTTTGATTTAAAACGACAATATGATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
650349 AGGACTGTTTGATTTAAAATGACAATATGATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
*
650384 AGGACTGTTTGATTTAAAATGACAATATAATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
*
650419 AGGACTGTTTGATTTAAAACGACAATATGATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
*
650454 AGGACTGTTTGATTTAAAATGACAATATAATACAG
1 AGGACTGTTTGATTTAAAATGACAATATGATACAG
650489 AGGACTGTTTGATTTAA
1 AGGACTGTTTGATTTAA
650506 CCTGACTTGA
Statistics
Matches: 183, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 183 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (35 bp):
AGGACTGTTTGATTTAAAATGACAATATGATACAG
Found at i:674306 original size:2 final size:2
Alignment explanation
Indices: 674299--674366 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
674289 TTAGAGTTCT
674299 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
674341 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
674367 NNNNNNNNNN
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:681208 original size:67 final size:66
Alignment explanation
Indices: 681116--681343 Score: 313
Period size: 67 Copynumber: 3.4 Consensus size: 66
681106 GCTTAGACAT
681116 ATATTACAGTAGTGATGGG-GACCATTGTTACCTATAGCTCAGACACAGATGCCCATATAGCTCA
1 ATATTACAGTAGTGATGGGTG-CCATTGTTACCTATAGCTCAGACACAGATGCCC-TATAGCTCA
681180 GAC
64 GAC
*
681183 ATATTACAGTAGTGATGGGTGCCATTGTTGCCTATAGCTCAGACACAGATGCCC-ATAGCTCAGA
1 ATATTACAGTAGTGATGGGTGCCATTGTTACCTATAGCTCAGACACAGATGCCCTATAGCTCAGA
681247 C
66 C
* * * *
681248 ATATTACAGTTGCGTTGGGCT-CCATTGTTTCCTATAGCTCAGACACAGATGCCCGT-T-GCTCA
1 ATATTACAGTAGTGATGGG-TGCCATTGTTACCTATAGCTCAGACACAGATGCCC-TATAGCTCA
681310 GACAC
64 G--AC
*
681315 ACATTACAGTAGTGATGGGTGCCATTGTT
1 ATATTACAGTAGTGATGGGTGCCATTGTT
681344 GCCCCCAACT
Statistics
Matches: 145, Mismatches: 9, Indels: 14
0.86 0.05 0.08
Matches are distributed among these distances:
65 65 0.45
66 3 0.02
67 76 0.52
68 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (66 bp):
ATATTACAGTAGTGATGGGTGCCATTGTTACCTATAGCTCAGACACAGATGCCCTATAGCTCAGA
C
Found at i:683533 original size:19 final size:17
Alignment explanation
Indices: 683499--683532 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
683489 ACTTGGGTCT
683499 TAATCTCTATATACACA
1 TAATCTCTATATACACA
683516 TAATCTCTATATACACA
1 TAATCTCTATATACACA
683533 CGTCCCTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATCTCTATATACACA
Found at i:683728 original size:19 final size:19
Alignment explanation
Indices: 683704--683741 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
683694 AGCGACTGAT
683704 ACGGACTGTTAATTAATCA
1 ACGGACTGTTAATTAATCA
683723 ACGGACTGTTAATTAATCA
1 ACGGACTGTTAATTAATCA
683742 TTGCATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
ACGGACTGTTAATTAATCA
Found at i:684807 original size:33 final size:30
Alignment explanation
Indices: 684719--684812 Score: 152
Period size: 30 Copynumber: 3.0 Consensus size: 30
684709 GGCGATTGGA
684719 CATCAGCTGTTACATTATTACATCACTGGC
1 CATCAGCTGTTACATTATTACATCACTGGC
*
684749 CATCAGCTGTTACATTATTACATCACCGGC
1 CATCAGCTGTTACATTATTACATCACTGGC
684779 CATCAGCTGTTACATAATGATTACATCACTGGC
1 CATCAGCTGTTACAT--T-ATTACATCACTGGC
684812 C
1 C
684813 GTATGTCACA
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
30 44 0.75
32 1 0.02
33 14 0.24
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (30 bp):
CATCAGCTGTTACATTATTACATCACTGGC
Found at i:688935 original size:229 final size:229
Alignment explanation
Indices: 688461--689107 Score: 1023
Period size: 229 Copynumber: 2.8 Consensus size: 229
688451 TGTAAAATCA
* * * *
688461 CAAATGCTGAATTTGTATCATAGTGTCATATAGTTTATATCCGTCTAAAAAATAAAAGCAAGATT
1 CAAATGCCGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
* * * **
688526 TTAGAATCCATGAGATGTGCTACTCGG-GATTTTACGCAGATATTAATTCCTT-ATGTTAAGAAA
66 TTAGAATCCACGAGATGTGCTACT-GGCGATTTTACGCGGATACTAATTCCTTGAT-TTAA-TTA
688589 GGAATCTACAGTATAA-ATCTACCAAAAACACTGCAACCATTGAATTTTAAATTGTCTTTAGTTG
128 GGAATCTACAGTATAATATCTA-C-AAAACACTGCAACCATTGAATTTTAAATTGTCTTTAGTTG
688653 CAGCTTGATGAACAATTATTTTTCTGAGTTCTGTTATCG
191 CAGCTTGATGAACAATTATTTTTCTGAGTTCTGTTATCG
688692 CAAATGCCGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
1 CAAATGCCGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
* ** *
688757 TTAGAATCCACGAGATATATTACTGGCGATTTTACGCGGATACTAATTCCTTGATTGAATTAGGA
66 TTAGAATCCACGAGATGTGCTACTGGCGATTTTACGCGGATACTAATTCCTTGATTTAATTAGGA
* **
688822 ATCTACAGTATAATATCTACAAAACTCTGCGCCCATTGAATTTTAAATTGTCTTTAGTTGCAGCT
131 ATCTACAGTATAATATCTACAAAACACTGCAACCATTGAATTTTAAATTGTCTTTAGTTGCAGCT
688887 TGATGAACAATTATTTTTCTGAGTTCTGTTATCG
196 TGATGAACAATTATTTTTCTGAGTTCTGTTATCG
*
688921 CAAATGCGGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
1 CAAATGCCGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
* * *
688986 TTAGAATCCACGAGATGTGCTACTGGCGATTTTACACGGATACTCATTCCTTGCGTTTAATTAGG
66 TTAGAATCCACGAGATGTGCTACTGGCGATTTTACGCGGATACTAATTCCTTG-ATTTAATTAGG
*
689051 AATCTACAGTATAATATCTAC-AAACACTGCATCCATTGAATTTTAAATTGTCTTTAG
130 AATCTACAGTATAATATCTACAAAACACTGCAACCATTGAATTTTAAATTGTCTTTAG
689108 AGTTCTGTTA
Statistics
Matches: 385, Mismatches: 27, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
229 221 0.57
230 50 0.13
231 112 0.29
232 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (229 bp):
CAAATGCCGAATTTGTATCATAGTTTCATTTAGTTTATATCCGTCTGAAAAATAAAAGCAAGATT
TTAGAATCCACGAGATGTGCTACTGGCGATTTTACGCGGATACTAATTCCTTGATTTAATTAGGA
ATCTACAGTATAATATCTACAAAACACTGCAACCATTGAATTTTAAATTGTCTTTAGTTGCAGCT
TGATGAACAATTATTTTTCTGAGTTCTGTTATCG
Found at i:691383 original size:2 final size:2
Alignment explanation
Indices: 691378--691429 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
691368 TGTGTGTGTG
691378 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
691420 TC TC TC TC TC
1 TC TC TC TC TC
691430 AACATGATGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:692010 original size:14 final size:14
Alignment explanation
Indices: 691991--692020 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
691981 GTTAGAGAAA
691991 AACAACAAAACCAC
1 AACAACAAAACCAC
*
692005 AACAACAAAGCCAC
1 AACAACAAAACCAC
692019 AA
1 AA
692021 GGTGTGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.33, G:0.03, T:0.00
Consensus pattern (14 bp):
AACAACAAAACCAC
Found at i:692882 original size:77 final size:74
Alignment explanation
Indices: 692659--692890 Score: 410
Period size: 74 Copynumber: 3.1 Consensus size: 74
692649 TAATATGTGC
* *
692659 ATTTGTTCTTTACGTATTTATAGTTTATAGCTAAGTAAACCATATCTAAATGTTTAAGGAAGATT
1 ATTTGTTCTTTACTTATTTATAGTTTATAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAGATT
692724 TGATGGTTA
66 TGATGGTTA
*
692733 ATATGTTCTTTACTTATTTATAGTTTATAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAGATT
1 ATTTGTTCTTTACTTATTTATAGTTTATAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAGATT
692798 TGATGGTTA
66 TGATGGTTA
692807 ATTTGTTCTTTACTTATTTATAGTTTATACTAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAG
1 ATTTGTTCTTTACTTATTTATAG-TT-TA-TAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAG
692872 ATTTGATGGTTA
63 ATTTGATGGTTA
692884 ATTTGTT
1 ATTTGTT
692891 GACCACTGAG
Statistics
Matches: 151, Mismatches: 4, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
74 93 0.62
75 2 0.01
76 2 0.01
77 54 0.36
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (74 bp):
ATTTGTTCTTTACTTATTTATAGTTTATAGCTAAGTAAACCATATCTAAAGGTTTAAGGAAGATT
TGATGGTTA
Found at i:694817 original size:20 final size:20
Alignment explanation
Indices: 694792--694857 Score: 132
Period size: 20 Copynumber: 3.3 Consensus size: 20
694782 AAGGGATTGT
694792 TATGATGTTAGGATCAGTGC
1 TATGATGTTAGGATCAGTGC
694812 TATGATGTTAGGATCAGTGC
1 TATGATGTTAGGATCAGTGC
694832 TATGATGTTAGGATCAGTGC
1 TATGATGTTAGGATCAGTGC
694852 TATGAT
1 TATGAT
694858 AAGGGAATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.36
Consensus pattern (20 bp):
TATGATGTTAGGATCAGTGC
Found at i:698950 original size:50 final size:50
Alignment explanation
Indices: 698875--699318 Score: 715
Period size: 50 Copynumber: 9.0 Consensus size: 50
698865 ATAATATATG
* * *
698875 CTGCAGTTACTGTCATTAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
698925 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
698975 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
*
699025 CTGCAGTAACTGTAATAAAGAAGTGTCTCAGCTAGCACC----TGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
* *
699071 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCAGTTTTTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
*
699121 CTGCAGTAACTGTAATAAAGAAGTGTCTCAGCTAGCACC----TGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
* *
699167 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCAGTTTTTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
* * *
699217 CTGCAGTAACTGTCATTAAGAGGTGCCTCAGCTAGCACCTGTTTGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
*
699267 CTGCAGTAACTGTAATATAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
699317 CT
1 CT
699319 TTGGTCTACC
Statistics
Matches: 367, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
46 89 0.24
50 278 0.76
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
Found at i:699095 original size:96 final size:97
Alignment explanation
Indices: 698875--699318 Score: 703
Period size: 96 Copynumber: 4.5 Consensus size: 97
698865 ATAATATATG
* * *
698875 CTGCAGTTACTGTCATTAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
*
698940 TAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTAC
66 TAAAGAAGTGTCTCAGCTAGCACC---TTGTTTAC
698975 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
699040 TAAAGAAGTGTCTCAGCTAGCACC-TGTTTAC
66 TAAAGAAGTGTCTCAGCTAGCACCTTGTTTAC
* *
699071 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCAGTTTTTTTACCTGCAGTAACTGTAA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
699136 TAAAGAAGTGTCTCAGCTAGCACC-TGTTTAC
66 TAAAGAAGTGTCTCAGCTAGCACCTTGTTTAC
* * *
699167 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCAGTTTTTTTACCTGCAGTAACTGTCA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
* * *
699232 TTAAGAGGTGCCTCAGCTAGCACCTGTTTGTTTAC
66 TAAAGAAGTGTCTCAGCTAGCACC---TTGTTTAC
*
699267 CTGCAGTAACTGTAATATAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCT
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCT
699319 TTGGTCTACC
Statistics
Matches: 327, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
96 186 0.57
100 141 0.43
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (97 bp):
CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
TAAAGAAGTGTCTCAGCTAGCACCTTGTTTAC
Found at i:699147 original size:146 final size:147
Alignment explanation
Indices: 698875--699318 Score: 691
Period size: 146 Copynumber: 3.0 Consensus size: 147
698865 ATAATATATG
* * *
698875 CTGCAGTTACTGTCATTAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACC---TTGTTTACCTGCAGTAACTGTAA
698940 TAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATAAAGAGGTGTCTCA
63 TAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATAAAGAGGTGTCTCA
699005 GCTAGCACCTGTTTGTTTAC
128 GCTAGCACCTGTTTGTTTAC
*
699025 CTGCAGTAACTGTAATAAAGAAGTGTCTCAGCTAGCACC-TGTTTACCTGCAGTAACTGTAATAA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTTGTTTACCTGCAGTAACTGTAATAA
* * *
699089 AGAGGTGTCTCAGCTAGCACCAGTTTTTTTACCTGCAGTAACTGTAATAAAGAAGTGTCTCAGCT
66 AGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATAAAGAGGTGTCTCAGCT
699154 AGCACC----TGTTTAC
131 AGCACCTGTTTGTTTAC
* *
699167 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCAGTTTTTTTACCTGCAGTAACTGTCA
1 CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACC---TTGTTTACCTGCAGTAACTGTAA
* * *
699232 TTAAGAGGTGCCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATATAGAGGTGTCTCA
63 TAAAGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATAAAGAGGTGTCTCA
699297 GCTAGCACCTGTTTGTTTAC
128 GCTAGCACCTGTTTGTTTAC
699317 CT
1 CT
699319 TTGGTCTACC
Statistics
Matches: 270, Mismatches: 16, Indels: 16
0.89 0.05 0.05
Matches are distributed among these distances:
142 45 0.17
146 181 0.67
150 44 0.16
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (147 bp):
CTGCAGTAACTGTAATAAAGAGGTGTCTCAGCTAGCACCTTGTTTACCTGCAGTAACTGTAATAA
AGAGGTGTCTCAGCTAGCACCTGTTTGTTTACCTGCAGTAACTGTAATAAAGAGGTGTCTCAGCT
AGCACCTGTTTGTTTAC
Found at i:699885 original size:37 final size:37
Alignment explanation
Indices: 699730--699886 Score: 113
Period size: 37 Copynumber: 4.0 Consensus size: 37
699720 ACAGTGTGTC
*
699730 CTGTGCTGACACAATGTGCTATTTTACTAGGATTTGA
1 CTGTGCTGACACAATGTGCTATTTTACAAGGATTTGA
* * *
699767 CAATGTGCTGACAAAACATTTGTGCT-TTTATA-ATAAGCTTTGGTTA
1 C--TGTGCTGAC---ACA-ATGTGCTATTT-TACA-AGGATTT-G--A
* * * *
699813 -TGTCCTTACACAATGTGCTATTTTTCTAGGATTTGA
1 CTGTGCTGACACAATGTGCTATTTTACAAGGATTTGA
*
699849 CTGTGCTGACACAATGTGCTATTTTACAAGGTTTTGA
1 CTGTGCTGACACAATGTGCTATTTTACAAGGATTTGA
699886 C
1 C
699887 AATGTGCTCT
Statistics
Matches: 90, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
36 1 0.01
37 33 0.37
38 1 0.01
39 21 0.23
40 6 0.07
42 6 0.07
43 20 0.22
44 1 0.01
46 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (37 bp):
CTGTGCTGACACAATGTGCTATTTTACAAGGATTTGA
Found at i:699937 original size:45 final size:46
Alignment explanation
Indices: 699849--699939 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
699839 TAGGATTTGA
**
699849 CTGTGCTGACACAATGTGCTATTTTACAAGGTTTTGACAATGTGCT
1 CTGTGCTGACACAATGTAATATTTTACAAGGTTTTGACAATGTGCT
* *
699895 CTGTGCTGACACAAT-TAATATTTTACTAGGATTTT-ACCATGTGCT
1 CTGTGCTGACACAATGTAATATTTTACAAGG-TTTTGACAATGTGCT
699940 GACACAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (46 bp):
CTGTGCTGACACAATGTAATATTTTACAAGGTTTTGACAATGTGCT
Found at i:700663 original size:21 final size:20
Alignment explanation
Indices: 700637--700678 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
700627 GGGGATGGAT
700637 ATGAAGGTGTTTTGAAAATAA
1 ATGAA-GTGTTTTGAAAATAA
* *
700658 ATGAAGTTTTTTGGAAATAA
1 ATGAAGTGTTTTGAAAATAA
700678 A
1 A
700679 GTTACATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (20 bp):
ATGAAGTGTTTTGAAAATAA
Found at i:702542 original size:20 final size:20
Alignment explanation
Indices: 701980--702541 Score: 822
Period size: 20 Copynumber: 28.1 Consensus size: 20
701970 GTAACCATAT
701980 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702000 ACAAACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702020 ACGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702040 ACAGACAGAAGGTAAGAC-A
1 ACAGACAGAAGGTAAGACAA
702059 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702079 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702099 ACTGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702119 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702139 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702159 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702179 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702199 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702219 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702239 ACGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702259 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702279 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702299 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702319 ACAGACAGAAAGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702339 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
* * **** *
702359 AAATCACCTCTGGTAA-CCATA
1 ACA-GACAGAAGGTAAGACA-A
702380 TACAGACAGAAGGTAAGACAA
1 -ACAGACAGAAGGTAAGACAA
*
702401 ACGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
*
702421 ACAGACAGAAAGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702441 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702461 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
** *
702481 ATGGACAGAAGGTAGGACAA
1 ACAGACAGAAGGTAAGACAA
702501 ACAGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
**
702521 ATGGACAGAAGGTAAGACAA
1 ACAGACAGAAGGTAAGACAA
702541 A
1 A
702542 TCAAAGTACT
Statistics
Matches: 488, Mismatches: 49, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
19 19 0.04
20 449 0.92
21 16 0.03
22 4 0.01
ACGTcount: A:0.53, C:0.14, G:0.26, T:0.07
Consensus pattern (20 bp):
ACAGACAGAAGGTAAGACAA
Found at i:702858 original size:34 final size:34
Alignment explanation
Indices: 702712--703268 Score: 690
Period size: 34 Copynumber: 16.2 Consensus size: 34
702702 ATTCTGTTTT
*
702712 ACCTCATCTCAATCTCACTCAGGAACATTCTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACA--CTGTGTA
** * * *
702748 ATATCATCTCTATCTCACTCAAGAATATATTGTGTA
1 ACCTCATCTCAATCTCACTCAAG-A-ACACTGTGTA
***
702784 ATAACATCTCAATCTCACTCAAGAACACTCCGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACT--GTGTA
* *
702820 ACCTAATCTCAATCTCACTCAATAACACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* *
702854 ACCTAATCTCAATCTCACTCAATAACACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
702888 ACCTCATCTCAATCTCACTCAAGAACAC--TGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* * *
702920 ACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* *
702954 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* * *
702988 ACCTCATATCAATCTTACTCAAGAAAACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
*
703022 ACCTCATCTCAATCTCACTCAAGAAAACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
703056 ACCTCATCTCAATCTCACTCAAGAACACTCTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACA--CTGTGTA
* *
703092 ACCTAATCTCAATCTCACTCAATAACACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
*
703126 GCCTCATCTCAATCTCACTCAAGAACAC--TGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* * *
703158 ACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* *
703192 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTA
1 ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
* * * *
703226 ACATCATATCAATCTTACTCAAGAACATCCTGTGTT
1 ACCTCATCTCAATCTCACTCAAGAACA--CTGTGTA
703262 ACCTCAT
1 ACCTCAT
703269 TGCATTCTCA
Statistics
Matches: 457, Mismatches: 52, Indels: 24
0.86 0.10 0.05
Matches are distributed among these distances:
32 57 0.12
34 277 0.61
35 1 0.00
36 119 0.26
37 1 0.00
38 2 0.00
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.29
Consensus pattern (34 bp):
ACCTCATCTCAATCTCACTCAAGAACACTGTGTA
Found at i:703103 original size:238 final size:239
Alignment explanation
Indices: 702712--703268 Score: 877
Period size: 238 Copynumber: 2.3 Consensus size: 239
702702 ATTCTGTTTT
* * * * * * * *
702712 ACCTCATCTCAATCTCACTCAGGAACATTCTGTGTAATATCATCTCTATCTCACTCAAGAATATA
1 ACCTCATCTCAATCTCGCTCAAGAA-A-ACTGTGTAACATCATATCAATCTTACTCAAGAACATA
* *** *
702777 TTGTGTAATAACATCTCAATCTCACTCAAGAACACTCCGTGTAACCTAATCTCAATCTCACTCAA
64 CTGTGTAACCTCATCTCAATCTCACTCAAGAAAACT-CGTGTAACCTAATCTCAATCTCACTCAA
*
702842 TAACACTGTGTAACCTAATCTCAATCTCACTCAATAACACTGTGTAACCTCATCTCAATCTCACT
128 GAACACTGTGTAACCTAATCTCAATCTCACTCAATAACACTGTGTAACCTCATCTCAATCTCACT
702907 CAAGAACACTGTAACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
193 CAAGAACACTGTAACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
*
702954 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTAACCTCATATCAATCTTACTCAAGAA-A-ACT
1 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTAACATCATATCAATCTTACTCAAGAACATACT
*
703017 GTGTAACCTCATCTCAATCTCACTCAAGAAAACT-GTGTAACCTCATCTCAATCTCACTCAAGAA
66 GTGTAACCTCATCTCAATCTCACTCAAGAAAACTCGTGTAACCTAATCTCAATCTCACTCAAGAA
*
703081 CACTCTGTGTAACCTAATCTCAATCTCACTCAATAACACTGTGTAGCCTCATCTCAATCTCACTC
131 CA--CTGTGTAACCTAATCTCAATCTCACTCAATAACACTGTGTAACCTCATCTCAATCTCACTC
703146 AAGAACACTGTAACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
194 AAGAACACTGTAACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
*
703192 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTAACATCATATCAATCTTACTCAAGAACATCCT
1 ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTAACATCATATCAATCTTACTCAAGAACATACT
*
703257 GTGTTACCTCAT
66 GTGTAACCTCAT
703269 TGCATTCTCA
Statistics
Matches: 292, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
236 30 0.10
238 196 0.67
239 2 0.01
240 40 0.14
241 1 0.00
242 23 0.08
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.29
Consensus pattern (239 bp):
ACCTCATCTCAATCTCGCTCAAGAAAACTGTGTAACATCATATCAATCTTACTCAAGAACATACT
GTGTAACCTCATCTCAATCTCACTCAAGAAAACTCGTGTAACCTAATCTCAATCTCACTCAAGAA
CACTGTGTAACCTAATCTCAATCTCACTCAATAACACTGTGTAACCTCATCTCAATCTCACTCAA
GAACACTGTAACCTAATCTCAATCTCACTCAAAAACCCTGTGTA
Found at i:703853 original size:26 final size:27
Alignment explanation
Indices: 703824--703881 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
703814 TGTCTCTGGG
* *
703824 TTTGTTGCA-TTTAATGTG-TTGCAGGT
1 TTTGTTGAAGTTTAATATGATTG-AGGT
703850 TTTG-TGAAGTTTAATATGATTGAGGT
1 TTTGTTGAAGTTTAATATGATTGAGGT
703876 TTTGTT
1 TTTGTT
703882 ATATTAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.11
26 20 0.74
27 4 0.15
ACGTcount: A:0.19, C:0.03, G:0.26, T:0.52
Consensus pattern (27 bp):
TTTGTTGAAGTTTAATATGATTGAGGT
Found at i:703935 original size:26 final size:26
Alignment explanation
Indices: 703840--703929 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 26
703830 GCATTTAATG
* * *
703840 TGTTGCAGGTTTTGTGA-AGTTTAATA
1 TGTTTCAGGTTTTGTTATA-TTAAATA
* * *
703866 TGATTGAGGTTTTGTTATATTAAACA
1 TGTTTCAGGTTTTGTTATATTAAATA
*
703892 TGTTTCAGTTTTTGTTATATTAAATA
1 TGTTTCAGGTTTTGTTATATTAAATA
703918 TGTTTCAGGTTT
1 TGTTTCAGGTTT
703930 ATTTATGTTT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.24, C:0.04, G:0.20, T:0.51
Consensus pattern (26 bp):
TGTTTCAGGTTTTGTTATATTAAATA
Found at i:712960 original size:22 final size:22
Alignment explanation
Indices: 712860--713414 Score: 433
Period size: 22 Copynumber: 26.1 Consensus size: 22
712850 TTCTCCTCCC
*
712860 GGATATCTAGACAGACAGACTA
1 GGATATCTAGACAGACAGACAA
*
712882 GGTTATAC-AGACAGACAGACAA
1 GGATAT-CTAGACAGACAGACAA
* * *
712904 GGATCTCTATAC--ACAGACAG
1 GGATATCTAGACAGACAGACAA
712924 GGATATCT----AGACAGACAA
1 GGATATCTAGACAGACAGACAA
*
712942 TGATATCTAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
* * *
712964 TGATATCTAGACAGGCAGACAT
1 GGATATCTAGACAGACAGACAA
* * *
712986 GGAAATCTAGACAGGCAGACAT
1 GGATATCTAGACAGACAGACAA
713008 GGATATCTAGACAGAC--A-AA
1 GGATATCTAGACAGACAGACAA
* *
713027 -GATATCTAGACAGACAAACAT
1 GGATATCTAGACAGACAGACAA
* * *
713048 TGATATCTAGACAGAGAGACTA
1 GGATATCTAGACAGACAGACAA
*
713070 GGATATAC-AGACAGACA-AAAA
1 GGATAT-CTAGACAGACAGACAA
* * *
713091 TGGATAGCTAGACAGATAGAAAA
1 -GGATATCTAGACAGACAGACAA
*
713114 GGATATCTAGACAGACGGACAA
1 GGATATCTAGACAGACAGACAA
713136 GGATATCTAGACAGACA-AGCAA
1 GGATATCTAGACAGACAGA-CAA
*
713158 GGATATCTATACAGACAGA-AA
1 GGATATCTAGACAGACAGACAA
713179 TGGATATCTAGACAGACAGACAA
1 -GGATATCTAGACAGACAGACAA
713202 GGATATCT----AGACAGACAA
1 GGATATCTAGACAGACAGACAA
* * *
713220 GGATATATATACAGACAGACAG
1 GGATATCTAGACAGACAGACAA
* *
713242 GGATATCTACATATATACAGACAGACAT
1 GGATA--T-C---TAGACAGACAGACAA
713270 GGATATCTAGAC--A-A-ACAA
1 GGATATCTAGACAGACAGACAA
713288 GGATATCT----AGACAGACAA
1 GGATATCTAGACAGACAGACAA
713306 GGATATCTAGACAGACAGACTGAAAA
1 GGATATCTAGACAGACAGAC----AA
* *
713332 GGATATATAGACAGACGGACAA
1 GGATATCTAGACAGACAGACAA
713354 GGATATCT----AGACAGACAA
1 GGATATCTAGACAGACAGACAA
** *
713372 TTACATCTAGACAG--A--CAA
1 GGATATCTAGACAGACAGACAA
713390 GGATATCTAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
713412 GGA
1 GGA
713415 AATCATTTCG
Statistics
Matches: 433, Mismatches: 50, Indels: 100
0.74 0.09 0.17
Matches are distributed among these distances:
16 1 0.00
17 1 0.00
18 97 0.22
19 2 0.00
20 19 0.04
21 8 0.02
22 254 0.59
23 9 0.02
24 1 0.00
25 1 0.00
26 21 0.05
28 19 0.04
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (22 bp):
GGATATCTAGACAGACAGACAA
Found at i:713262 original size:28 final size:28
Alignment explanation
Indices: 713224--713278 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
713214 AGACAAGGAT
713224 ATATATACAGACAGACAGGGATATCTAC
1 ATATATACAGACAGACAGGGATATCTAC
*
713252 ATATATACAGACAGACATGGATATCTA
1 ATATATACAGACAGACAGGGATATCTA
713279 GACAAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (28 bp):
ATATATACAGACAGACAGGGATATCTAC
Found at i:713370 original size:18 final size:18
Alignment explanation
Indices: 713344--713406 Score: 90
Period size: 18 Copynumber: 3.5 Consensus size: 18
713334 ATATATAGAC
*
713344 AGACGGACAAGGATATCT
1 AGACAGACAAGGATATCT
** *
713362 AGACAGACAATTACATCT
1 AGACAGACAAGGATATCT
713380 AGACAGACAAGGATATCT
1 AGACAGACAAGGATATCT
713398 AGACAGACA
1 AGACAGACA
713407 GACAAGGAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (18 bp):
AGACAGACAAGGATATCT
Found at i:728405 original size:22 final size:22
Alignment explanation
Indices: 728372--728756 Score: 367
Period size: 22 Copynumber: 17.1 Consensus size: 22
728362 TTCTCCTCCC
*
728372 GGATATCTAGACAGACAGACTA
1 GGATATCTAGACAGACAGACAA
*
728394 GGATA--T--ACAGACACACAA
1 GGATATCTAGACAGACAGACAA
* * *
728412 CGATATCTATAC--ACAGACAG
1 GGATATCTAGACAGACAGACAA
728432 GGATATCT----AGACAGACAA
1 GGATATCTAGACAGACAGACAA
*
728450 GGATATCTAGACAGACAGACAT
1 GGATATCTAGACAGACAGACAA
728472 GGATATCTAGACAGACAGACAGACAA
1 GGATATCT----AGACAGACAGACAA
728498 GGATATCTAGACAGACAGACAGACAA
1 GGATATCT----AGACAGACAGACAA
*
728524 GGATATCTAGACAGACACACAA
1 GGATATCTAGACAGACAGACAA
*
728546 GGATATCTAGACCGACAGACAA
1 GGATATCTAGACAGACAGACAA
728568 GGATATCTAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
* *
728590 GGATATCTAGACAGAGAGACAT
1 GGATATCTAGACAGACAGACAA
* * *
728612 GGATATCTACATATATACAGACAAACAT
1 GGATA--T-C---TAGACAGACAGACAA
**
728640 TAATATCTAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
*
728662 GGATATATAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
728684 GGATATCTAGACAGACAGACTGAAAA
1 GGATATCTAGACAGACAGAC----AA
* *
728710 GGATATATAGACAGACGGACAA
1 GGATATCTAGACAGACAGACAA
*
728732 GGATATATAGACAGACAGACAA
1 GGATATCTAGACAGACAGACAA
728754 GGA
1 GGA
728757 AATCATTTCG
Statistics
Matches: 309, Mismatches: 30, Indels: 48
0.80 0.08 0.12
Matches are distributed among these distances:
18 29 0.09
20 15 0.05
22 179 0.58
24 1 0.00
25 2 0.01
26 68 0.22
28 15 0.05
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (22 bp):
GGATATCTAGACAGACAGACAA
Found at i:728463 original size:18 final size:18
Alignment explanation
Indices: 728384--728488 Score: 95
Period size: 18 Copynumber: 5.5 Consensus size: 18
728374 ATATCTAGAC
*
728384 AGACAGACTAGGATATAC-
1 AGACAGACAAGGATAT-CT
* *
728402 AGACACACAACGATATCTAT
1 AGACAGACAAGGATATC--T
* *
728422 ACACAGACAGGGATATCT
1 AGACAGACAAGGATATCT
728440 AGACAGACAAGGATATCT
1 AGACAGACAAGGATATCT
728458 AGACAGACAGACATGGATATCT
1 AGACAGAC--A-A-GGATATCT
728480 AGACAGACA
1 AGACAGACA
728489 GACAGACAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.01
18 38 0.54
20 15 0.21
21 1 0.01
22 16 0.23
ACGTcount: A:0.44, C:0.20, G:0.20, T:0.16
Consensus pattern (18 bp):
AGACAGACAAGGATATCT
Found at i:741661 original size:50 final size:49
Alignment explanation
Indices: 741571--741717 Score: 213
Period size: 50 Copynumber: 2.9 Consensus size: 49
741561 CAACAACTGG
* *
741571 TATATCATGCACCACATTGCTAAGCTTATGGCACAATATGCATGTCACAT
1 TATATCATGCACCACATTGCT-AGCTGATTGCACAATATGCATGTCACAT
* **
741621 TATATCATGCTCCACATTGCTAGGCTGATTGCACTTTATGCATGTCACAT
1 TATATCATGCACCACATTGCTA-GCTGATTGCACAATATGCATGTCACAT
*
741671 TATATCATGCACCACATTGCTCAGCTGATTGCACAGTATGCATGTCA
1 TATATCATGCACCACATTGCT-AGCTGATTGCACAATATGCATGTCA
741718 TTATGAAGTA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
49 1 0.01
50 85 0.98
51 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (49 bp):
TATATCATGCACCACATTGCTAGCTGATTGCACAATATGCATGTCACAT
Found at i:741772 original size:27 final size:27
Alignment explanation
Indices: 741734--743792 Score: 2114
Period size: 27 Copynumber: 75.0 Consensus size: 27
741724 AGTAAATCGC
*
741734 GACAGTATATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
741761 GACAGTAAATGGCAGTGAAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
741788 GACAGTAAATGGCAGTGTACTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * *
741815 GACAGTAAACGACAGTATAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * * *
741842 GACAGTAAATGGCAATATAGTCTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
741871 GACAGTGAATGGCAATGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
741898 GACAGTGAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
741925 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
741952 GTCAGTAAATGGCACTGTAGTGTCA-T
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
741978 AGACAGTAAATGGCACTGTAGTGTCACT
1 -GACAGTAAATGGCAGTGTAGTGTCACT
*
742006 GACAGTAAATGGCACTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742033 GACAGTCAATGGCACTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742060 GACAGTAAATGGCCGTGTAGTG-CTACT
1 GACAGTAAATGGCAGTGTAGTGTC-ACT
*
742087 GACAGTTAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * * * * *
742114 AATAGGAAATGACAGTGCAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* * *
742143 GACAGTAAATGTCGGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
742172 GACAGTGAATGGCAGTGAAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
742199 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
742226 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742253 GTCAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742280 GTCAGTAAATGGCACTGTAGTGTCA-T
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742306 AGACAGTAAATGGCACTGTAGTGTCACT
1 -GACAGTAAATGGCAGTGTAGTGTCACT
*
742334 GACAGTAAATGGCACTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742361 GACAGTAAATGGCCGTGTAGTGTTACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742388 GACAGTTAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * * * *
742415 AATAGTAAATGACAGTGCAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
742444 GACAGTAAATGTCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
*
742473 GACAGTGAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742500 GACAGTGAATGGCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
742529 GACAGTGAATGGCAGTATAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742556 GACAGTAAATGGTAGTGTATTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
742583 GACAGTAAATGGCCGTGAAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742610 GACAGTAAATGTCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742637 GACAGTAAATGGCAGTATAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* **
742664 GACAGTAAATGGCAGTATAGTGTCTTT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
742691 GACAGTAAATGGCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
*
742720 GACAGTGAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * ** *
742747 TAC-TTTCAT--CAGTGGT-GATGTCTTTCT
1 GACAGTAAATGGCAGT-GTAG-TGTC--ACT
* ** ** * * *
742774 -CCAGCTTCAGTTTTC-CTCT-G-GCCACCCT
1 GACAG--T-AAATGGCAGTGTAGTGTCA--CT
*** * * * *
742802 GAGCA-TGCCT-TC-TTCTACTGTGTC-TT
1 GA-CAGTAAATGGCAGTGTA--GTGTCACT
* * * * * *** *
742828 TACTGATAAGACGAACCACTG-ACACCTCCCT
1 GACAG-TAA-ATG--GCAGTGTA-GTGTCACT
* ** * * *
742859 GTAACA-CAACAGTATC-GTAATAATGACATCT
1 G--ACAGTAA-A-TGGCAGT-GTAGTGTCA-CT
** *** * *
742890 CCCAGTAATACAACAGTATCATANGTGTCACA
1 GACAGTAA-ATGGCAG--T-GTA-GTGTCACT
742922 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
742949 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * *
742976 GACAGTTAATGGTAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
743005 GACGGTAAATGGCAGTGCAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743032 GACAGTAAATGGCTGTGTAGTGACA-T
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743058 AGACAGTAAATGGCAGTGTAGTGTCATTGT
1 -GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
743088 GACGGTAAATGGCTGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743115 GACAGTAAATGGCCGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
743144 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743171 GACAGTAAATGGAAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
743198 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743225 GACAGTAAATGGC-----AGTGTCACG
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743247 GACAGGAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743274 GACAGTAAAAGGCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
743303 GACGGTAAATGGCTGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743330 GACAGTAAATGGCATTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743357 GACAGTAAATGGCTGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743384 GACATTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743411 GACAGTAAATGGCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
*
743440 GACAGTGAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743467 GACAGTAAATGGCAGTATAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743494 GACAGTAAATGGCAGTGTAATGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* * *
743521 GATAGTAAATGGAAGTGTAGTGTCCCT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743548 GACAGTAAATAGCAGTGTAGTGTCACG
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743575 GACAGTTAATGGCAGTGTAGTGTCATTGT
1 GACAGTAAATGGCAGTGTAGTGTCA--CT
* *
743604 GACGGTAAATGGCCGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743631 GACAGTAAATGGTAATGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743658 GACAGTAAATGGAAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
* *
743685 GACAGTAAATAGCAGTGTAGTGTCACG
1 GACAGTAAATGGCAGTGTAGTGTCACT
743712 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
*
743739 GACAGTAAATGGCAGTGTAGTGTCATT
1 GACAGTAAATGGCAGTGTAGTGTCACT
743766 GACAGTAAATGGCAGTGTAGTGTCACT
1 GACAGTAAATGGCAGTGTAGTGTCACT
743793 TACTTTCATC
Statistics
Matches: 1723, Mismatches: 237, Indels: 144
0.82 0.11 0.07
Matches are distributed among these distances:
22 20 0.01
24 5 0.00
25 12 0.01
26 11 0.01
27 1301 0.76
28 10 0.01
29 316 0.18
30 15 0.01
31 14 0.01
32 13 0.01
33 6 0.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
GACAGTAAATGGCAGTGTAGTGTCACT
Found at i:744046 original size:50 final size:50
Alignment explanation
Indices: 743987--744155 Score: 239
Period size: 50 Copynumber: 3.4 Consensus size: 50
743977 AACAAAATGG
*
743987 TATCAAATTAATGACAACTCCCCGAAACACAACTAAACCTTTCAATGATC
1 TATCAAATTAATGACAACTCCCTGAAACACAACTAAACCTTTCAATGATC
* * * *
744037 TATCAAATTAATGACACCTCCCTGAAACACAACCAAACCTTTTATTGATC
1 TATCAAATTAATGACAACTCCCTGAAACACAACTAAACCTTTCAATGATC
* * * * * *
744087 TATCAAATTAATGACACCTCCCTGTAACCCAATTAAACCTTTCACTGAAC
1 TATCAAATTAATGACAACTCCCTGAAACACAACTAAACCTTTCAATGATC
744137 TATCAAATTAATGACAACT
1 TATCAAATTAATGACAACT
744156 ACCTATAGCC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 106 1.00
ACGTcount: A:0.40, C:0.27, G:0.06, T:0.27
Consensus pattern (50 bp):
TATCAAATTAATGACAACTCCCTGAAACACAACTAAACCTTTCAATGATC
Found at i:744198 original size:49 final size:50
Alignment explanation
Indices: 743987--744201 Score: 188
Period size: 50 Copynumber: 4.3 Consensus size: 50
743977 AACAAAATGG
* * * * *
743987 TATCAAATTAATGACAACTCCCCGA-AACACAA-CTAAACCTTTCAATGATC
1 TATCAAATTAATGACAACT-ACCTATAACCCAATC-AAACCTTTTACTGATC
* * * * *
744037 TATCAAATTAATGACACCTCCCTGA-AACACAACCAAACCTTTTATTGATC
1 TATCAAATTAATGACAACTACCT-ATAACCCAATCAAACCTTTTACTGATC
* * * * * *
744087 TATCAAATTAATGACACCTCCCTGTAACCCAATTAAACCTTTCACTGAAC
1 TATCAAATTAATGACAACTACCTATAACCCAATCAAACCTTTTACTGATC
* *
744137 TATCAAATTAATGACAACTACCTAT-AGCC-ATCAATATCTTTTACTGATC
1 TATCAAATTAATGACAACTACCTATAACCCAATCAA-ACCTTTTACTGATC
*
744186 TATCAAACTAATGACA
1 TATCAAATTAATGACA
744202 TCTCCCTGTT
Statistics
Matches: 141, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.03
49 32 0.23
50 104 0.74
51 1 0.01
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.28
Consensus pattern (50 bp):
TATCAAATTAATGACAACTACCTATAACCCAATCAAACCTTTTACTGATC
Found at i:744208 original size:99 final size:100
Alignment explanation
Indices: 743987--744210 Score: 274
Period size: 100 Copynumber: 2.2 Consensus size: 100
743977 AACAAAATGG
* * *
743987 TATCAAATTAATGACAACTCCCCGAAACACAACTAAACCTTTCAATGATCTATCAAATTAATGAC
1 TATCAAATTAATGACAACTCCCTGTAACACAACTAAACCTTTCAATGAACTATCAAATTAATGAC
* * *
744052 ACCTCCCTGAAACACAACCAAACCTTTTATTGATC
66 AACTACCTGAAACACAACCAAACCTTTTACTGATC
* * * *
744087 TATCAAATTAATGACACCTCCCTGTAACCCAATTAAACCTTTCACTGAACTATCAAATTAATGAC
1 TATCAAATTAATGACAACTCCCTGTAACACAACTAAACCTTTCAATGAACTATCAAATTAATGAC
* * *
744152 AACTACCT-ATAGC-C-ATCAATATCTTTTACTGATC
66 AACTACCTGA-AACACAACCAA-ACCTTTTACTGATC
* *
744186 TATCAAACTAATGACATCTCCCTGT
1 TATCAAATTAATGACAACTCCCTGT
744211 TATGCACAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 4 0.04
99 37 0.35
100 66 0.62
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (100 bp):
TATCAAATTAATGACAACTCCCTGTAACACAACTAAACCTTTCAATGAACTATCAAATTAATGAC
AACTACCTGAAACACAACCAAACCTTTTACTGATC
Found at i:744545 original size:49 final size:49
Alignment explanation
Indices: 744487--744683 Score: 331
Period size: 49 Copynumber: 4.0 Consensus size: 49
744477 ACTGACCTAG
* *
744487 TTAACTTACCTGGTCTGTCCGACGCGGTGTCACCTGTCCTCCACCTGTT
1 TTAACTTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
* *
744536 TTAACTTACCTGGTCTGTCCGACGCGGTGTCACCTGTCCTCCGCCCGTT
1 TTAACTTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
* *
744585 TTAAATTACCTGGTCTGTCCGACGCAGTGACACCTGTCCTCCGCCTGTT
1 TTAACTTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
*
744634 TTAACCTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
1 TTAACTTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
744683 T
1 T
744684 GTCATTGTAC
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 139 1.00
ACGTcount: A:0.13, C:0.35, G:0.21, T:0.31
Consensus pattern (49 bp):
TTAACTTACCTGGTCTGTCCGACGCGGTGACACCTGTCCTCCGCCTGTT
Found at i:745821 original size:43 final size:43
Alignment explanation
Indices: 745630--745831 Score: 167
Period size: 43 Copynumber: 4.6 Consensus size: 43
745620 ACATAACAAC
* * *
745630 TACACAGCCTTCACACATGTGCTACACATGCACATACAACACAGG
1 TACACAGCCTT-A-ACACGTGCTACACATGCACACAAAACACAGG
* * * *
745675 TACACAGCCTTCACAGGTAAC-ACACATGTACACAAAACACAGG
1 TACACAGCCTTAACACGT-GCTACACATGCACACAAAACACAGG
** * * * * ** *
745718 TACACA-CCTTCTAACATATGCTTCACATACATACACATTACTGG
1 TACACAGCC-T-TAACACGTGCTACACATGCACACAAAACACAGG
* *
745762 TACACAGCCTTCACACGTGAC-ACAAATGCACACAAAACACAGG
1 TACACAGCCTTAACACGTG-CTACACATGCACACAAAACACAGG
745805 TACACAGCCTTAACACGTGCTACACAT
1 TACACAGCCTTAACACGTGCTACACAT
745832 ACCTATCTGG
Statistics
Matches: 119, Mismatches: 31, Indels: 16
0.72 0.19 0.10
Matches are distributed among these distances:
42 3 0.03
43 75 0.63
44 28 0.24
45 13 0.11
ACGTcount: A:0.38, C:0.32, G:0.12, T:0.19
Consensus pattern (43 bp):
TACACAGCCTTAACACGTGCTACACATGCACACAAAACACAGG
Found at i:745830 original size:132 final size:131
Alignment explanation
Indices: 745580--745819 Score: 367
Period size: 132 Copynumber: 1.8 Consensus size: 131
745570 ACATACACAT
745580 CACAGGTACACACCTTCTAACATATGCTTCACATACACACACATAACAACTACACAGCCTTCACA
1 CACAGGTACACACCTTCTAACATATGCTTCACATACACACACATAACAACTACACAGCCTTCACA
* * * *
745645 CATGTGCTACACATGCACATACAACACAGGTACACAGCCTTCACAGGTAACACACATGTACACAA
66 CA-GTGCTACAAATGCACACAAAACACAGGTACACAGCCTTAACAGGTAACACACATGTACACAA
745710 AA
130 AA
* * ***
745712 CACAGGTACACACCTTCTAACATATGCTTCACATACATACACATTACTGGTACACAGCCTTCACA
1 CACAGGTACACACCTTCTAACATATGCTTCACATACACACACATAACAACTACACAGCCTTCACA
745777 C-GTGAC-ACAAATGCACACAAAACACAGGTACACAGCCTTAACA
66 CAGTG-CTACAAATGCACACAAAACACAGGTACACAGCCTTAACA
745820 CGTGCTACAC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
130 36 0.37
131 1 0.01
132 61 0.62
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.19
Consensus pattern (131 bp):
CACAGGTACACACCTTCTAACATATGCTTCACATACACACACATAACAACTACACAGCCTTCACA
CAGTGCTACAAATGCACACAAAACACAGGTACACAGCCTTAACAGGTAACACACATGTACACAAA
A
Found at i:745988 original size:43 final size:43
Alignment explanation
Indices: 745925--746913 Score: 1591
Period size: 43 Copynumber: 23.0 Consensus size: 43
745915 ATCATAGTGA
* *
745925 ACTGACTGAATAACAGCACTCTGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
745968 ACTGACTAAATAACAACACTCAGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
746011 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746054 ACTGACTGAATAACAGCACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
746097 ACTGACTAAATAACAGCACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * *
746140 TCTGACTGAATAACAACACTCGGCCCCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
746183 ACTGACTGAATAACAGCACTCGGTCTCTCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
746226 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * *
746269 ACTGACTAAATAACAGCACTCGGTCTCCGTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746312 ACTGACTGAATAACAACACTCGGTCTCCCTATAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746355 ACTGACTGAATAACAACACTCAGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * *
746398 ACTGACTGAATAACAGCACTCAGTCCCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746441 ACTGACTGAATAACAGCACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746484 ACTGACTGAATAACAACACTCAGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * * *
746527 ACTAATTGAATAACAACACTTGGTCCCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
746570 ACTGACTGAATAACAACACTTGGTCTTCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
746613 ACTGACTAAATAACAACACTCAGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746656 ACTGACTGAATAACAACACTCAGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * * *
746699 ACTAATTGAATAACAACACTTGGTCCCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* *
746742 ACTGACTGAATAACAACACTTGGTCTTCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
746785 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
* * * * *
746828 ACTAATTGAATAACAACACTTGGTCCCCCTTCAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
*
746871 ACTGACTAAATAACAACACTCGGTCTCCCTACAGATAAACATG
1 ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
746914 CCACATAAGA
Statistics
Matches: 876, Mismatches: 70, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 876 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (43 bp):
ACTGACTGAATAACAACACTCGGTCTCCCTACAGATAAACATG
Found at i:746091 original size:25 final size:25
Alignment explanation
Indices: 746063--746134 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 25
746053 GACTGACTGA
746063 ATAACAGCACTCGGTCTCCCTACAG
1 ATAACAGCACTCGGTCTCCCTACAG
* **
746088 ATAA-A-CA-T--GACTGACTA-A-
1 ATAACAGCACTCGGTCTCCCTACAG
746106 ATAACAGCACTCGGTCTCCCTACAG
1 ATAACAGCACTCGGTCTCCCTACAG
746131 ATAA
1 ATAA
746135 ACATGTCTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
18 4 0.12
19 2 0.06
20 8 0.24
21 1 0.03
22 1 0.03
23 8 0.24
24 2 0.06
25 8 0.24
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (25 bp):
ATAACAGCACTCGGTCTCCCTACAG
Found at i:747232 original size:26 final size:26
Alignment explanation
Indices: 747202--747292 Score: 123
Period size: 26 Copynumber: 3.5 Consensus size: 26
747192 CCCATGAGAA
*
747202 ATTTGCTTGTTTACACATTACCTGAG
1 ATTTGTTTGTTTACACATTACCTGAG
747228 ATTTGTTTGTTTACA-AGTTACCTGAG
1 ATTTGTTTGTTTACACA-TTACCTGAG
*
747254 CTTTTGTTT-TTTCACACATTACCTGAG
1 -ATTTGTTTGTTT-ACACATTACCTGAG
747281 ATTTGTTTGTTT
1 ATTTGTTTGTTT
747293 CCAACAGTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
25 1 0.02
26 33 0.58
27 22 0.39
28 1 0.02
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (26 bp):
ATTTGTTTGTTTACACATTACCTGAG
Found at i:747775 original size:16 final size:16
Alignment explanation
Indices: 747763--750470 Score: 3324
Period size: 16 Copynumber: 169.2 Consensus size: 16
747753 AAGGATAGGA
* *
747763 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
747779 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
747795 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
747811 AGGACTACAGACAGCG
1 AGGACTACAGACAGGG
* *
747827 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
747843 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
747859 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
747875 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
747891 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
747907 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
747923 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
747939 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
747955 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
747971 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
747987 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
748003 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
*
748019 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
748035 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
748051 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
748067 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
748083 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
748099 AGGATTACAGACAGGA
1 AGGACTACAGACAGGG
* * **
748115 AGGAATA-AGGATAGAA
1 AGGACTACA-GACAGGG
*
748131 AGGACTACAGACAAGG
1 AGGACTACAGACAGGG
748147 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
748163 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
748179 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
748195 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
748211 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
748227 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
748243 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748259 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
748275 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
748291 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
748307 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
* *
748323 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
*
748339 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
748355 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
748371 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748387 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
*
748403 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
* *
748419 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
*
748435 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
748451 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
748467 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748483 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
748499 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748515 AGGACTACAGAGAGGG
1 AGGACTACAGACAGGG
* *
748531 AGGATTACAGACAGGA
1 AGGACTACAGACAGGG
* * **
748547 AGGAATA-AGGATAGAA
1 AGGACTACA-GACAGGG
*
748563 AGGACTACAGACAAGG
1 AGGACTACAGACAGGG
748579 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
748595 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
748611 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
748627 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
748643 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
748659 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
748675 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748691 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
748707 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
748723 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
748739 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
* *
748755 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
*
748771 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
748787 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
748803 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748819 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
*
748835 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
* *
748851 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
*
748867 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
748883 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
748899 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748915 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
748931 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
748947 AGGACTACAGAGAGGG
1 AGGACTACAGACAGGG
* *
748963 AGGATTACAGACAGGA
1 AGGACTACAGACAGGG
* * **
748979 AGGAATA-AGGATAGAA
1 AGGACTACA-GACAGGG
*
748995 AGGACTACAGACAAGG
1 AGGACTACAGACAGGG
749011 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
749027 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
749043 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
749059 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
749075 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
749091 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
749107 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749123 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
749139 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
749155 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
749171 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
* *
749187 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
*
749203 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
749219 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
749235 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749251 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
*
749267 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
* *
749283 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
*
749299 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
749315 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
749331 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749347 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
749363 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749379 AGGACTACAGAGAGGG
1 AGGACTACAGACAGGG
* *
749395 AGGATTACAGACAGGA
1 AGGACTACAGACAGGG
* * **
749411 AGGAATA-AGGATAGAA
1 AGGACTACA-GACAGGG
*
749427 AGGACTACAGACAAGG
1 AGGACTACAGACAGGG
749443 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
749459 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
749475 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
749491 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
749507 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
749523 AGGACTACTGATAGGG
1 AGGACTACAGACAGGG
749539 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749555 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
749571 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* *
749587 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
749603 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
* *
749619 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
*
749635 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
749651 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
749667 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749683 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
*
749699 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
* *
749715 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
*
749731 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
*
749747 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
749763 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749779 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
749795 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749811 AGGACTACAGAGAGGG
1 AGGACTACAGACAGGG
* *
749827 AGGATTACAGACAGGA
1 AGGACTACAGACAGGG
* * **
749843 AGGAATA-AGGATAGAA
1 AGGACTACA-GACAGGG
749859 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
749875 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
749891 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
749907 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
749923 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
749939 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
*
749955 AGGACTACAGATAGGG
1 AGGACTACAGACAGGG
* *
749971 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
* *
749987 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* * *
750003 AGGACTTCGGATAGGG
1 AGGACTACAGACAGGG
* *
750019 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
* *
750035 AGGACTACAGATAAGG
1 AGGACTACAGACAGGG
* *
750051 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
750067 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
* *
750083 AGGACTACGGATAGGG
1 AGGACTACAGACAGGG
* *
750099 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
750115 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
750131 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * *
750147 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
750163 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
750179 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * **
750195 AGAACTTCAGACAGCC
1 AGGACTACAGACAGGG
750211 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
750227 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
750243 AGGACTACAGACAGGA
1 AGGACTACAGACAGGG
750259 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
* * * *
750275 AGGAATGA-TGATAGGA
1 AGGACT-ACAGACAGGG
*
750291 AGGATTACAGACAGGG
1 AGGACTACAGACAGGG
*
750307 AGGACTA-AGGACAGGA
1 AGGACTACA-GACAGGG
* **
750323 AGGACT-CTGGACAGAA
1 AGGACTAC-AGACAGGG
*
750339 AGGACTA-AGGACAGGA
1 AGGACTACA-GACAGGG
750355 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
*
750371 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
* * *
750387 AGGAATA-AGGATAGGA
1 AGGACTACA-GACAGGG
*
750403 AGGACTACGGACAGGG
1 AGGACTACAGACAGGG
* *
750419 AGGACTACAGATAGGA
1 AGGACTACAGACAGGG
* *
750435 AGGACTTCAGATAGGG
1 AGGACTACAGACAGGG
750451 AGGACTACAGACAGGG
1 AGGACTACAGACAGGG
750467 AGGA
1 AGGA
750471 ATAAGGATAG
Statistics
Matches: 2350, Mismatches: 310, Indels: 64
0.86 0.11 0.02
Matches are distributed among these distances:
15 13 0.01
16 2324 0.99
17 13 0.01
ACGTcount: A:0.39, C:0.15, G:0.36, T:0.10
Consensus pattern (16 bp):
AGGACTACAGACAGGG
Found at i:750491 original size:432 final size:432
Alignment explanation
Indices: 747772--750470 Score: 4519
Period size: 432 Copynumber: 6.2 Consensus size: 432
747762 AAGGACTACT
* * *
747772 GATAGGGAGGACTACAGACAGGGAGGACTACAGATAGGGAGGACTACAGACAGCGAGGACTACGG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
* * * * * * *
747837 ATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGAATAAGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
* * * * *
747902 TAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
* * *
747967 AGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACAGATA
196 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
* * *
748032 GGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGACAG
261 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
748097 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
326 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
748162 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
391 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
748204 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
748269 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
748334 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
748399 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
196 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
748464 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
261 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
748529 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
326 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
748594 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
391 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
748636 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
748701 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
748766 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
748831 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
196 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
748896 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
261 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
748961 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
326 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
749026 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
391 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
749068 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
749133 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
749198 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
749263 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
196 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
749328 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
261 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
749393 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
326 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
749458 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
391 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
749500 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
749565 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
749630 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
749695 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
196 AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
749760 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
261 GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
*
749825 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAGGGAGGACTACAGACAGG
326 GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
*
749890 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGACTACA-
391 GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATA-AG
* * * * * * *
749932 GACAGGGAGGACTACAGACAGGAAGGACTACAGATAGGGAGGACTACGGATAGGGAGGACTACAG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
* * * * * * * * * *
749997 ATAGGAAGGACTTCGGATAGGGAGGACTACGGATAGGGAGGACTACAGATAAGGAGGACTACAGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
* * * * * *
750062 TAGGAAGGACTTCAGATAGGGAGGACTACGGATAGGGAGGACTACAGATAGGAAGGACTACAGAC
131 TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
* * * * *
750127 AGGGAGGACTACAGACAGGGAGGAATA-AGGATAGGAAGGACTACAGACAGGGAGGACTACAGAC
196 AGGAAGGACTACAGATAGGGAGGACTACA-GATAGGAAGGACTACAGATAGGGAGGACTACAGAT
* * ** * *
750191 AGGGAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGACA
260 AGGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGA
* * * * * * * *
750256 GGAAGGACTACAGACAGGGAGGAATGATGATAGGAAGGATTACAGACAGGGAGGACTA-AGGACA
325 GGGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACA-GACA
* * * ** * *
750320 GGAAGGAC-TCTGGACAGAAAGGACTA-AGGACAGGAAGGACTACA-
389 GGGAGAACTTC-AGACAGCCAGGACTACA-GACAGGGAGGAATA-AG
* * * * ** * * *
750364 GACAGGGAGGACTACGGACAGGGAGGAATAAGGATAGGAAGGACTACGGACAGGGAGGACTACAG
1 GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
* * * * * *
750429 ATAGGAAGGACTTCAGATAGGGAGGACTACAGACAGGGAGGA
66 ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGA
750471 ATAAGGATAG
Statistics
Matches: 2182, Mismatches: 80, Indels: 10
0.96 0.04 0.00
Matches are distributed among these distances:
431 5 0.00
432 2176 1.00
433 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.36, T:0.10
Consensus pattern (432 bp):
GATAGGAAGGACTACAGACAGGGAGGACTACTGATAGGGAGGACTACAGACAGGGAGGACTACGG
ACAGGGAGGACTACAGACAGGGAGGACTACAGATAGGAAGGACTTCAGATAGGGAGGACTACGGA
TAGGGAGGACTACAGATAGGGAGGACTACAGACAGGGAGGACTACAGACAGGGAGGACTACAGAC
AGGAAGGACTACAGATAGGGAGGACTACAGATAGGAAGGACTACAGATAGGGAGGACTACAGATA
GGGAGGACTACAGACAGGGAGGACTACGGACAGGGAGGACTACAGACAGGGAGGACTACAGAGAG
GGAGGATTACAGACAGGAAGGAATAAGGATAGAAAGGACTACAGACAAGGAGGACTACAGACAGG
GAGAACTTCAGACAGCCAGGACTACAGACAGGGAGGAATAAG
Found at i:750558 original size:32 final size:32
Alignment explanation
Indices: 750307--750560 Score: 91
Period size: 32 Copynumber: 7.9 Consensus size: 32
750297 ACAGACAGGG
* * *
750307 AGGACTAAGGACAGGAAGGACTCTGGACAGAA
1 AGGACTATGGACAGGAAAGACTATGGACAGAA
* * ** **
750339 AGGACTAAGGACAGGAAGGACTACAGACAGGG
1 AGGACTATGGACAGGAAAGACTATGGACAGAA
* * * * * * *
750371 AGGACTACGGACAGGGAGGAATAAGGATAGGA
1 AGGACTATGGACAGGAAAGACTATGGACAGAA
* * * ** * *
750403 AGGACTACGGACAGGGAGGACTACAGATAGGA
1 AGGACTATGGACAGGAAAGACTATGGACAGAA
* * * * ** **
750435 AGGACT-TCAGATAGGGAGGACTACAGACAGGG
1 AGGACTAT-GGACAGGAAAGACTATGGACAGAA
* * * * * *
750467 AGGAATAAGGATAGGAAGGACTACATAGA-AG-G
1 AGGACTATGGACAGGAAAGACT--ATGGACAGAA
*
750499 AGGACTATGGACAGGAAAGACTCTGGACAGAA
1 AGGACTATGGACAGGAAAGACTATGGACAGAA
* * *
750531 AGGACTATGGACGGGAAGGATTATGGACAG
1 AGGACTATGGACAGGAAAGACTATGGACAG
750561 GATTGACATA
Statistics
Matches: 180, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
30 3 0.02
31 2 0.01
32 169 0.94
33 2 0.01
34 4 0.02
ACGTcount: A:0.39, C:0.13, G:0.37, T:0.11
Consensus pattern (32 bp):
AGGACTATGGACAGGAAAGACTATGGACAGAA
Found at i:755063 original size:17 final size:17
Alignment explanation
Indices: 755041--755074 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
755031 CCGTAATGTA
755041 TCGTGTATAAAACGCAC
1 TCGTGTATAAAACGCAC
*
755058 TCGTGTATAATACGCAC
1 TCGTGTATAAAACGCAC
755075 CCCCAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (17 bp):
TCGTGTATAAAACGCAC
Found at i:757001 original size:25 final size:25
Alignment explanation
Indices: 756966--757014 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
756956 TACCAAGTCT
* * *
756966 TCTTTATATGTTAATTTTTACTATA
1 TCTTTACATGTAAATTGTTACTATA
756991 TCTTTACATGTAAATTGTTACTAT
1 TCTTTACATGTAAATTGTTACTAT
757015 GGAATTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (25 bp):
TCTTTACATGTAAATTGTTACTATA
Found at i:757061 original size:28 final size:30
Alignment explanation
Indices: 756991--757169 Score: 109
Period size: 28 Copynumber: 6.0 Consensus size: 30
756981 TTTTACTATA
*
756991 TCTTTACATGTAAATTGTTACTATGGAATTT
1 TCTTTACATGTAAATTGTTACCATGG-ATTT
**
757022 T-TATTTTATGTAAATTGTTACCA-GG-TTT
1 TCT-TTACATGTAAATTGTTACCATGGATTT
* *
757050 TCTTTACATGTAAATTGTTGCAAT-GATTTT
1 TCTTTACATGTAAATTGTTACCATGGA-TTT
* * * * * * *
757080 TTTTTACATTTACACTGTCATCAAGGATTT
1 TCTTTACATGTAAATTGTTACCATGGATTT
* * * *
757110 TTTTCTACAAGTAAACTGTTACC-TTG-TTT
1 TCTT-TACATGTAAATTGTTACCATGGATTT
* * *
757139 TCTTTACAGGTGAATTGTAACCATGGATTT
1 TCTTTACATGTAAATTGTTACCATGGATTT
757169 T
1 T
757170 TTTTTTGCTA
Statistics
Matches: 110, Mismatches: 29, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
28 35 0.32
29 9 0.08
30 33 0.30
31 33 0.30
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.48
Consensus pattern (30 bp):
TCTTTACATGTAAATTGTTACCATGGATTT
Found at i:757412 original size:49 final size:44
Alignment explanation
Indices: 757294--757467 Score: 225
Period size: 41 Copynumber: 4.0 Consensus size: 44
757284 TCTTTACATG
*
757294 TTTATATAATACATACATGTATCATTTTATTGGACGGTGA---A
1 TTTATATAATACATACATGTATCATTTTATTGGACGGTGAGTTC
*
757335 TTTATATAATACATACATGTATCATTTTATTGGATGGTGAGTTTAC
1 TTTATATAATACATACATGTATCATTTTATTGGACGGTGAG-TT-C
* *
757381 ATGTTTAAATAATACAAACATGTATCATTTTATTGGACGGTGAG--C
1 ---TTTATATAATACATACATGTATCATTTTATTGGACGGTGAGTTC
757426 -TTATATAATACATACATGTATCATTTTATTGGACGGTGAGTT
1 TTTATATAATACATACATGTATCATTTTATTGGACGGTGAGTT
757468 ACCTCTAAGC
Statistics
Matches: 116, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
41 77 0.66
45 1 0.01
49 38 0.33
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (44 bp):
TTTATATAATACATACATGTATCATTTTATTGGACGGTGAGTTC
Found at i:757439 original size:90 final size:90
Alignment explanation
Indices: 757286--757467 Score: 319
Period size: 90 Copynumber: 2.0 Consensus size: 90
757276 TGTTTCTCTC
* * *
757286 TTTACATGTTTATATAATACATACATGTATCATTTTATTGGACGGTGAATTTATATAATACATAC
1 TTTACATGTTTAAATAATACAAACATGTATCATTTTATTGGACGGTGAACTTATATAATACATAC
*
757351 ATGTATCATTTTATTGGATGGTGAG
66 ATGTATCATTTTATTGGACGGTGAG
*
757376 TTTACATGTTTAAATAATACAAACATGTATCATTTTATTGGACGGTGAGCTTATATAATACATAC
1 TTTACATGTTTAAATAATACAAACATGTATCATTTTATTGGACGGTGAACTTATATAATACATAC
757441 ATGTATCATTTTATTGGACGGTGAG
66 ATGTATCATTTTATTGGACGGTGAG
757466 TT
1 TT
757468 ACCTCTAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (90 bp):
TTTACATGTTTAAATAATACAAACATGTATCATTTTATTGGACGGTGAACTTATATAATACATAC
ATGTATCATTTTATTGGACGGTGAG
Found at i:757689 original size:26 final size:26
Alignment explanation
Indices: 757660--757740 Score: 162
Period size: 26 Copynumber: 3.1 Consensus size: 26
757650 GCATGTAAAT
757660 AAATCCATGATATCTCCATGACAACA
1 AAATCCATGATATCTCCATGACAACA
757686 AAATCCATGATATCTCCATGACAACA
1 AAATCCATGATATCTCCATGACAACA
757712 AAATCCATGATATCTCCATGACAACA
1 AAATCCATGATATCTCCATGACAACA
757738 AAA
1 AAA
757741 CTCTTTTCTG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.44, C:0.26, G:0.07, T:0.22
Consensus pattern (26 bp):
AAATCCATGATATCTCCATGACAACA
Found at i:757694 original size:15 final size:15
Alignment explanation
Indices: 757674--757721 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
757664 CCATGATATC
757674 TCCATGACAACAAAA
1 TCCATGACAACAAAA
* *
757689 TCCATGATATC----
1 TCCATGACAACAAAA
757700 TCCATGACAACAAAA
1 TCCATGACAACAAAA
757715 TCCATGA
1 TCCATGA
757722 TATCTCCATG
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
11 9 0.36
15 16 0.64
ACGTcount: A:0.44, C:0.27, G:0.08, T:0.21
Consensus pattern (15 bp):
TCCATGACAACAAAA
Found at i:758064 original size:72 final size:72
Alignment explanation
Indices: 757974--758227 Score: 508
Period size: 72 Copynumber: 3.5 Consensus size: 72
757964 TATAGTACGA
757974 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
1 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
758039 ATGACAT
66 ATGACAT
758046 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
1 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
758111 ATGACAT
66 ATGACAT
758118 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
1 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
758183 ATGACAT
66 ATGACAT
758190 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGA
1 ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGA
758228 GTTCCAGTAG
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 182 1.00
ACGTcount: A:0.17, C:0.42, G:0.12, T:0.29
Consensus pattern (72 bp):
ACCCTGTCTCTCCTTTCCGTTGTCCATCAGGTTACTGACCCTCACCCCCTACACCCACCACCTGT
ATGACAT
Found at i:766604 original size:62 final size:58
Alignment explanation
Indices: 766501--766667 Score: 246
Period size: 62 Copynumber: 2.8 Consensus size: 58
766491 TCAGTCGAGT
* *
766501 GGGGGAGGGGGTCACACACCTAAAAATAGGTAAGACATAGAAAGATTATCATTAAAGC
1 GGGGGAAGGGGTCACACACCTCAAAATAGGTAAGACATAGAAAGATTATCATTAAAGC
766559 -GGGGAAGGGGTCACACACCTCAACTTGAAATAGGTAAGACATAGAAAGATTATCATTAAAGC
1 GGGGGAAGGGGTCACACACCTC-A----AAATAGGTAAGACATAGAAAGATTATCATTAAAGC
* *
766621 GGGGGAGGGGGTCATACACCTCAAAATAGGTAAGACATAGAAAGATT
1 GGGGGAAGGGGTCACACACCTCAAAATAGGTAAGACATAGAAAGATT
766668 GGGGATAAGT
Statistics
Matches: 99, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
57 19 0.19
58 25 0.25
62 36 0.36
63 19 0.19
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.18
Consensus pattern (58 bp):
GGGGGAAGGGGTCACACACCTCAAAATAGGTAAGACATAGAAAGATTATCATTAAAGC
Found at i:768878 original size:3 final size:3
Alignment explanation
Indices: 768870--768916 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
768860 TAGAATAACT
* * * *
768870 ATG ATG ATG ATA ATG ATG GTG ATT TTG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
768917 TGTAGGTGGC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.38
Consensus pattern (3 bp):
ATG
Found at i:771837 original size:20 final size:19
Alignment explanation
Indices: 771813--772352 Score: 173
Period size: 20 Copynumber: 26.7 Consensus size: 19
771803 GCCAATTTAT
*
771813 GCGACTGTCAGCTAT-TGTA
1 GCGACTGTCAGCTATAT-CA
*
771832 GACGACTCTCAGCTGATATCA
1 G-CGACTGTCAGCT-ATATCA
771853 GCGACTGTCAGCTAATAT-A
1 GCGACTGTCAGCT-ATATCA
*
771872 TGCGACTCTCAGCTGATATCA
1 -GCGACTGTCAGCT-ATATCA
771893 GCGACTGTCAGCCTATAT-A
1 GCGACTGTCAG-CTATATCA
*
771912 TGCGACTCTCAGCTGATATCA
1 -GCGACTGTCAGCT-ATATCA
771933 GCGACTGTCAGCTAATAT-A
1 GCGACTGTCAGCT-ATATCA
* * *
771952 TGCAACTCTCGGCTAATATCA
1 -GCGACTGTCAGCT-ATATCA
* ** * * *
771973 GTGTTTGTTAGTCAATGT-A
1 GCGACTGTCAG-CTATATCA
771992 TGCGACTGTCAGCTAATATCA
1 -GCGACTGTCAGCT-ATATCA
* * **
772013 GCGTCTGTCAGCTAATGTGT
1 GCGACTGTCAGCT-ATATCA
*
772033 GCGATTGTCAGCTGA-ATTCA
1 GCGACTGTCAGCT-ATA-TCA
** * *
772053 AAGTCTGTCAGCTA-ATGTA
1 GCGACTGTCAGCTATAT-CA
*
772072 TGCGACTCTCAGCTGATATCA
1 -GCGACTGTCAGCT-ATATCA
* ** *
772093 GTGTTTGTCAGCTAATACATGTATA
1 GCGACTGTCAGCT-AT--A--T-CA
772118 TGCGACTGTCAGCTAATATCA
1 -GCGACTGTCAGCT-ATATCA
* *
772139 GCGTCTGTCAGCTA-ATGTA
1 GCGACTGTCAGCTATAT-CA
*
772158 TGAGACTGTCAGCTGATATCA
1 -GCGACTGTCAGCT-ATATCA
* * * **
772179 ACGTCTGTCAGCTAATGTGT
1 GCGACTGTCAGCT-ATATCA
772199 GCGACTGTCAGCTGATATCA
1 GCGACTGTCAGCT-ATATCA
* * *
772219 ACGTCTGTCAGCTA-ATGTA
1 GCGACTGTCAGCTATAT-CA
* * *
772238 TGCGACTGTAAGCCAATGTCA
1 -GCGACTGTCAG-CTATATCA
** * *
772259 GCGTTTGTCAGTCAATGT-A
1 GCGACTGTCAG-CTATATCA
772278 TGCGACTGTCAGCTAATATCA
1 -GCGACTGTCAGCT-ATATCA
* * **
772299 GCGTCTGTCAGCTAATGTGT
1 GCGACTGTCAGCT-ATATCA
772319 GCGACTGTCAGCTGATATCA
1 GCGACTGTCAGCT-ATATCA
* *
772339 ACGTCTGTCAGCTA
1 GCGACTGTCAGCTA
772353 ATGTATGCGA
Statistics
Matches: 380, Mismatches: 104, Indels: 74
0.68 0.19 0.13
Matches are distributed among these distances:
18 5 0.01
19 18 0.05
20 313 0.82
21 20 0.05
22 8 0.02
24 2 0.01
25 1 0.00
26 13 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (19 bp):
GCGACTGTCAGCTATATCA
Found at i:771844 original size:40 final size:40
Alignment explanation
Indices: 771795--772430 Score: 377
Period size: 40 Copynumber: 15.8 Consensus size: 40
771785 CAATGAATGA
* * * *
771795 GACTGTCAGCCAAT-TTATGCGACTGTCAGCTATTGTA-GAC
1 GACTCTCAGCCAATATCA-GCGACTGTCAGCTAATATATG-C
**
771835 GACTCTCAGCTGATATCAGCGACTGTCAGCTAATATATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
**
771875 GACTCTCAGCTGATATCAGCGACTGTCAGCCT-ATATATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAG-CTAATATATGC
**
771915 GACTCTCAGCTGATATCAGCGACTGTCAGCTAATATATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* * * * ** * *
771955 AACTCTCGGCTAATATCAGTGTTTGTTAG-TCAATGTATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCT-AATATATGC
* * * * *
771995 GACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* * * ** * *
772035 GATTGTCAGCTGAAT-TCAAAGTCTGTCAGCTAATGTATGC
1 GACTCTCAGC-CAATATCAGCGACTGTCAGCTAATATATGC
** * **
772075 GACTCTCAGCTGATATCAGTGTTTGTCAGCTAATACATGTATATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGC---TA-A--TATATGC
* * * * *
772121 GACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGA
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* ** * * * *
772161 GACTGTCAGCTGATATCAACGTCTGTCAGCTAATGTGTGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* ** * * *
772201 GACTGTCAGCTGATATCAACGTCTGTCAGCTAATGTATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* * * ** *
772241 GACTGTAAGCCAATGTCAGCGTTTGTCAG-TCAATGTATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCT-AATATATGC
* * * * *
772281 GACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* ** * * *
772321 GACTGTCAGCTGATATCAACGTCTGTCAGCTAATGTATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
* * * ** **
772361 GACTGTAAGCCAATGTCAGCGTTTGTCAG-TCAATGGATGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGCT-AATATATGC
* * * *
772401 GACTGTCAGCCAATCTCAGAGTCTGTCAGC
1 GACTCTCAGCCAATATCAGCGACTGTCAGC
772431 GAGGTCTCCG
Statistics
Matches: 508, Mismatches: 70, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
39 7 0.01
40 453 0.89
41 10 0.02
42 1 0.00
43 4 0.01
44 1 0.00
46 32 0.06
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (40 bp):
GACTCTCAGCCAATATCAGCGACTGTCAGCTAATATATGC
Found at i:771904 original size:80 final size:80
Alignment explanation
Indices: 771778--772430 Score: 672
Period size: 80 Copynumber: 8.1 Consensus size: 80
771768 TGCCAGCGGA
* * * * * * * *
771778 TGTCAGCCAATGAATGAGACTGTCAGCCAAT-TTATGCGACTGTCAGCTATTGTA-GACGACTCT
1 TGTCAGCTAATGTATGCGACTGTCAGCTAATATCA-GCGTCTGTCAGCTAATGTATG-CGACTGT
*
771841 CAGCTGATATCAGCGAC
64 CAGCTGATATCAGCGTC
* * * * * *
771858 TGTCAGCTAATATATGCGACTCTCAGCTGATATCAGCGACTGTCAGCCT-ATATATGCGACTCTC
1 TGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAG-CTAATGTATGCGACTGTC
*
771922 AGCTGATATCAGCGAC
65 AGCTGATATCAGCGTC
* * * * * * *
771938 TGTCAGCTAATATATGCAACTCTCGGCTAATATCAGTGTTTGTTAG-TCAATGTATGCGACTGTC
1 TGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCT-AATGTATGCGACTGTC
*
772002 AGCTAATATCAGCGTC
65 AGCTGATATCAGCGTC
* * ** *
772018 TGTCAGCTAATGTGTGCGATTGTCAGCTGAAT-TCAAAGTCTGTCAGCTAATGTATGCGACTCTC
1 TGTCAGCTAATGTATGCGACTGTCAGCT-AATATCAGCGTCTGTCAGCTAATGTATGCGACTGTC
* *
772082 AGCTGATATCAGTGTT
65 AGCTGATATCAGCGTC
*
772098 TGTCAGCTAATACATGTATATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGAGA
1 TGTCAGC---TA-ATG--TATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGCGA
*
772163 CTGTCAGCTGATATCAACGTC
60 CTGTCAGCTGATATCAGCGTC
* * * *
772184 TGTCAGCTAATGTGTGCGACTGTCAGCTGATATCAACGTCTGTCAGCTAATGTATGCGACTGTAA
1 TGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCA
** * *
772249 GCCAATGTCAGCGTT
66 GCTGATATCAGCGTC
*
772264 TGTCAG-TCAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTGTC
1 TGTCAGCT-AATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGCGACTGTC
*
772328 AGCTGATATCAACGTC
65 AGCTGATATCAGCGTC
* * * * *
772344 TGTCAGCTAATGTATGCGACTGTAAGCCAATGTCAGCGTTTGTCAG-TCAATGGATGCGACTGTC
1 TGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCT-AATGTATGCGACTGTC
** * *
772408 AGCCAATCTCAGAGTC
65 AGCTGATATCAGCGTC
772424 TGTCAGC
1 TGTCAGC
772431 GAGGTCTCCG
Statistics
Matches: 481, Mismatches: 75, Indels: 34
0.82 0.13 0.06
Matches are distributed among these distances:
78 1 0.00
79 2 0.00
80 393 0.82
81 10 0.02
82 3 0.01
83 4 0.01
84 3 0.01
85 3 0.01
86 62 0.13
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (80 bp):
TGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCA
GCTGATATCAGCGTC
Found at i:772315 original size:120 final size:119
Alignment explanation
Indices: 771778--772430 Score: 677
Period size: 120 Copynumber: 5.4 Consensus size: 119
771768 TGCCAGCGGA
* * * * *
771778 TGTCAGCCAATGAATGAGACTGTCAGCCAAT-TTATGCGACTGTCAGCT-AT-TGTAGACGACTC
1 TGTCAG-CAATGTATGCGACTGTCAGCTAATATCA-GCGTCTGTCAGCTAATGTGT-G-CGACTC
* * * * *
771840 TCAGCTGATATCAGCGACTGTCAGCTAATATATGCGACTCTCAGCTGATATCAGCGAC
62 TCAGCTGATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTC
* * * * * * * * *
771898 TGTCAGCCTATATATGCGACTCTCAGCTGATATCAGCGACTGTCAGCTAATATATGCAACTCTCG
1 TGTCAG-CAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTCTCA
* * * *
771963 GCTAATATCAGTGTTTGTTAG-TCAATGTATGCGACTGTCAGCTAATATCAGCGTC
65 GCTGATATCAGCGTCTGTCAGCT-AATGTATGCGACTGTCAGCTAATATCAGCGTC
* * ** *
772018 TGTCAGCTAATGTGTGCGATTGTCAGCTGAAT-TCAAAGTCTGTCAGCTAATGTATGCGACTCTC
1 TGTCAGC-AATGTATGCGACTGTCAGCT-AATATCAGCGTCTGTCAGCTAATGTGTGCGACTCTC
* *
772082 AGCTGATATCAGTGTTTGTCAGCTAATACATGTATATGCGACTGTCAGCTAATATCAGCGTC
64 AGCTGATATCAGCGTCTGTCAGC---TA-ATG--TATGCGACTGTCAGCTAATATCAGCGTC
* * * *
772144 TGTCAGCTAATGTATGAGACTGTCAGCTGATATCAACGTCTGTCAGCTAATGTGTGCGACTGTCA
1 TGTCAGC-AATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTCTCA
* * * * *
772209 GCTGATATCAACGTCTGTCAGCTAATGTATGCGACTGTAAGCCAATGTCAGCGTT
65 GCTGATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTC
*
772264 TGTCAGTCAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTGTCA
1 TGTCAG-CAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTCTCA
* * * * *
772329 GCTGATATCAACGTCTGTCAGCTAATGTATGCGACTGTAAGCCAATGTCAGCGTT
65 GCTGATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTC
* * * *
772384 TGTCAGTCAATGGATGCGACTGTCAGCCAATCTCAGAGTCTGTCAGC
1 TGTCAG-CAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGC
772431 GAGGTCTCCG
Statistics
Matches: 463, Mismatches: 55, Indels: 30
0.84 0.10 0.05
Matches are distributed among these distances:
119 2 0.00
120 337 0.73
121 8 0.02
122 5 0.01
123 3 0.01
124 4 0.01
125 2 0.00
126 102 0.22
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (119 bp):
TGTCAGCAATGTATGCGACTGTCAGCTAATATCAGCGTCTGTCAGCTAATGTGTGCGACTCTCAG
CTGATATCAGCGTCTGTCAGCTAATGTATGCGACTGTCAGCTAATATCAGCGTC
Found at i:772414 original size:20 final size:20
Alignment explanation
Indices: 771778--772414 Score: 154
Period size: 20 Copynumber: 31.6 Consensus size: 20
771768 TGCCAGCGGA
* *
771778 TGTCAGCCAATGAATGAGAC
1 TGTCAGCCAATGTATGCGAC
*
771798 TGTCAGCCAATTTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* *
771818 TGTCAGCTATTGTA-GACGAC
1 TGTCAGCCAATGTATG-CGAC
* ** *
771838 TCTCAGCTGATATCA-GCGAC
1 TGTCAGCCAATGT-ATGCGAC
* *
771858 TGTCAGCTAATATATGCGAC
1 TGTCAGCCAATGTATGCGAC
* ** *
771878 TCTCAGCTGATATCA-GCGAC
1 TGTCAGCCAATGT-ATGCGAC
* *
771898 TGTCAGCCTATATATGCGAC
1 TGTCAGCCAATGTATGCGAC
* ** *
771918 TCTCAGCTGATATCA-GCGAC
1 TGTCAGCCAATGT-ATGCGAC
* * *
771938 TGTCAGCTAATATATGCAAC
1 TGTCAGCCAATGTATGCGAC
* * * * * **
771958 TCTCGGCTAATATCA-GTGTT
1 TGTCAGCCAATGT-ATGCGAC
* *
771978 TGTTAGTCAATGTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* * *
771998 TGTCAGCTAATATCA-GCGTC
1 TGTCAGCCAATGT-ATGCGAC
* * *
772018 TGTCAGCTAATGTGTGCGAT
1 TGTCAGCCAATGTATGCGAC
* ** *
772038 TGTCAGCTGAAT-TCA-AAGTC
1 TGTCAGC-CAATGT-ATGCGAC
*
772058 TGTCAGCTAATGTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* ** * * **
772078 TCTCAGCTGATATCA-GTGTT
1 TGTCAGCCAATGT-ATGCGAC
*
772098 TGTCAGCTAATACATGTATATGCGAC
1 TGTCAGC---CA-ATG--TATGCGAC
* * *
772124 TGTCAGCTAATATCA-GCGTC
1 TGTCAGCCAATGT-ATGCGAC
* *
772144 TGTCAGCTAATGTATGAGAC
1 TGTCAGCCAATGTATGCGAC
** * * *
772164 TGTCAGCTGATATCA-ACGTC
1 TGTCAGCCAATGT-ATGCGAC
* *
772184 TGTCAGCTAATGTGTGCGAC
1 TGTCAGCCAATGTATGCGAC
** * * *
772204 TGTCAGCTGATATCA-ACGTC
1 TGTCAGCCAATGT-ATGCGAC
*
772224 TGTCAGCTAATGTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* **
772244 TGTAAGCCAATGTCA-GCGTT
1 TGTCAGCCAATGT-ATGCGAC
*
772264 TGTCAGTCAATGTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* * *
772284 TGTCAGCTAATATCA-GCGTC
1 TGTCAGCCAATGT-ATGCGAC
* *
772304 TGTCAGCTAATGTGTGCGAC
1 TGTCAGCCAATGTATGCGAC
** * * *
772324 TGTCAGCTGATATCA-ACGTC
1 TGTCAGCCAATGT-ATGCGAC
*
772344 TGTCAGCTAATGTATGCGAC
1 TGTCAGCCAATGTATGCGAC
* **
772364 TGTAAGCCAATGTCA-GCGTT
1 TGTCAGCCAATGT-ATGCGAC
* *
772384 TGTCAGTCAATGGATGCGAC
1 TGTCAGCCAATGTATGCGAC
772404 TGTCAGCCAAT
1 TGTCAGCCAAT
772415 CTCAGAGTCT
Statistics
Matches: 453, Mismatches: 127, Indels: 74
0.69 0.19 0.11
Matches are distributed among these distances:
19 14 0.03
20 406 0.90
21 15 0.03
22 2 0.00
23 3 0.01
24 2 0.00
25 1 0.00
26 10 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (20 bp):
TGTCAGCCAATGTATGCGAC
Found at i:774065 original size:26 final size:26
Alignment explanation
Indices: 774036--774116 Score: 153
Period size: 26 Copynumber: 3.1 Consensus size: 26
774026 ATCTCTAGCG
774036 ATCGTATTGTGGGATTACTTGTTCAC
1 ATCGTATTGTGGGATTACTTGTTCAC
*
774062 ATCGTATTGTGGGATTACTCGTTCAC
1 ATCGTATTGTGGGATTACTTGTTCAC
774088 ATCGTATTGTGGGATTACTTGTTCAC
1 ATCGTATTGTGGGATTACTTGTTCAC
774114 ATC
1 ATC
774117 ATAGAGTGCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (26 bp):
ATCGTATTGTGGGATTACTTGTTCAC
Found at i:779421 original size:15 final size:15
Alignment explanation
Indices: 779401--779431 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
779391 CATTAGACTA
779401 AATAATTATAAATAT
1 AATAATTATAAATAT
779416 AATAATTATAAATAT
1 AATAATTATAAATAT
779431 A
1 A
779432 GGTATGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATAATTATAAATAT
Found at i:780622 original size:14 final size:14
Alignment explanation
Indices: 780603--780633 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
780593 CATGTACATG
780603 AAAAATAGTGTTTT
1 AAAAATAGTGTTTT
*
780617 AAAAATATTGTTTT
1 AAAAATAGTGTTTT
780631 AAA
1 AAA
780634 TTGAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (14 bp):
AAAAATAGTGTTTT
Found at i:787729 original size:32 final size:32
Alignment explanation
Indices: 787688--788324 Score: 422
Period size: 32 Copynumber: 19.9 Consensus size: 32
787678 ATTTGTCATC
* * * *
787688 CATTGTTACACGTTGGTGTCGTCTTGAATTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * *
787720 CATTGTTACAAATTTGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
**
787752 CATTGTTACACATTGGTGGCGTTTTGACTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
*
787784 CATTGTTACACATTGGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* *** *
787816 CATTG-T-CACACTGGTAATGT-CAGAGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGA-CTTTG
* * *
787846 CAATGTTACAC-TCTGGTGGCGTCAT-AATTTG
1 CATTGTTACACAT-TGGTGGCGTCCTGACTTTG
* ** ** ** * ** *
787877 CACTGCAATGCATTTATGGCATCCTGGTTTTA
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * *
787909 CAGTATTACACATTTGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * *
787941 CAATGTTGCACATTGGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * * *
787973 CAATGTTACACATTTGTGACGTCCTGGCTTTT
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * *
788005 CATTGTTATATAGTGGTGGCGTTCTTG-CTTTG
1 CATTGTTACACATTGGTGGCG-TCCTGACTTTG
* ** * *
788037 CATTATTACACATCCGTAGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* *
788069 CAATGTTACACATTGGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
** * * ** *
788101 CATTGTTGTATAGTGGTGGCGTGTTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
** * *
788133 CATTGTTACACATCCGTAGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * *
788165 CAATGTTACACATTGGTGACGTCCTGGCTTTT
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* ** * *
788197 CATTGTTATACATAAGCGGAGTCCTGACTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * * * *
788229 TACTGTTACATATTGGAGGCGTTCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGACTTTG
* * * * *
788261 CATTGTCATACATTGATGGAGTCTTGCATGGCTTTG
1 CATTGTTACACATTGGTGGCGTC---C-TGACTTTG
788297 CATTGTTACACATTGGTGGCGTCCTGAC
1 CATTGTTACACATTGGTGGCGTCCTGAC
788325 ATTGGTTGAT
Statistics
Matches: 457, Mismatches: 135, Indels: 26
0.74 0.22 0.04
Matches are distributed among these distances:
29 2 0.00
30 19 0.04
31 24 0.05
32 379 0.83
33 5 0.01
35 1 0.00
36 27 0.06
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (32 bp):
CATTGTTACACATTGGTGGCGTCCTGACTTTG
Found at i:787789 original size:64 final size:64
Alignment explanation
Indices: 787688--788322 Score: 506
Period size: 64 Copynumber: 9.9 Consensus size: 64
787678 ATTTGTCATC
* * * ** * *
787688 CATTGTTACACGTTGGTGTCGTCTTGAATTTGCATTGTTACAAATTTGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
** *
787752 CATTGTTACACATTGGTGGCGTTTTGACTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* *** * * * **
787816 CATTG-T-CACACTGGTAATGT-CAGAGCTTTGCAATGTTACAC-TCTGGTGGCGTCAT-AATTT
1 CATTGTTACACATTGGTGGCGTCCTG-GCTTTGCATTGTTACACAT-TGGTGGCGTCCTGGCTTT
787876 G
64 G
* ** ** ** * * * * * *
787877 CACTGCAATGCATTTATGGCATCCTGGTTTTACAGTATTACACATTTGTGGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* * * * * *
787941 CAATGTTGCACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTTGTGACGTCCTGGCTTTT
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* * * * * * ** *
788005 CATTGTTATATAGTGGTGGCGTTCTTGCTTTGCATTATTACACATCCGTAGCGTCCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* ** * * **
788069 CAATGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTGTATAGTGGTGGCGTGTTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
** * * * *
788133 CATTGTTACACATCCGTAGCGTCCTGGCTTTGCAATGTTACACATTGGTGACGTCCTGGCTTTT
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* ** * * * * * * * *
788197 CATTGTTATACATAAGCGGAGTCCTGACTTTGTACTGTTACATATTGGAGGCGTTCTGGCTTTG
1 CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
* * * *
788261 CATTGTCATACATTGATGGAGTCTTGCATGGCTTTGCATTGTTACACATTGGTGGCGTCCTG
1 CATTGTTACACATTGGTGGCGTC---C-TGGCTTTGCATTGTTACACATTGGTGGCGTCCTG
788323 ACATTGGTTG
Statistics
Matches: 440, Mismatches: 120, Indels: 18
0.76 0.21 0.03
Matches are distributed among these distances:
61 10 0.02
62 36 0.08
63 29 0.07
64 336 0.76
67 1 0.00
68 28 0.06
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (64 bp):
CATTGTTACACATTGGTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTG
Found at i:788025 original size:96 final size:96
Alignment explanation
Indices: 787735--788322 Score: 470
Period size: 96 Copynumber: 6.1 Consensus size: 96
787725 TTACAAATTT
** * *
787735 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTTTTGACTTTGCATTGTTACACATTGG
1 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
* * *
787800 TGGCGTCCTGGCTTTGCATTG-T-CACACTG
66 TGGCGTCCTGGCTTTTCATTGTTATACAGTG
*** * * * ** * ** **
787829 GTAATGT-CAGAGCTTTGCAATGTTACAC-TCTGGTGGCGTCAT-AATTTGCACTGCAATGCATT
1 GTGGCGTCCTG-GCTTTGCATTGTTACACAT-TGGTGGCGTCCTGGCTTTGCAATGTTACACATT
** * * * * * *
787891 TATGGCATCCTGG-TTTTACAGTATTACACATTT
64 GGTGGCGTCCTGGCTTTT-CATTGTTATACAGTG
* * *
787924 GTGGCGTCCTGGCTTTGCAATGTTGCACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTTG
1 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
* *
787989 TGACGTCCTGGCTTTTCATTGTTATATAGTG
66 TGGCGTCCTGGCTTTTCATTGTTATACAGTG
* * * ** *
788020 GTGGCGTTCTTGCTTTGCATTATTACACATCCGTAGCGTCCTGGCTTTGCAATGTTACACATTGG
1 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
* * *
788085 TGGCGTCCTGGCTTTGCATTGTTGTATAGTG
66 TGGCGTCCTGGCTTTTCATTGTTATACAGTG
** ** *
788116 GTGGCGTGTTGGCTTTGCATTGTTACACATCCGTAGCGTCCTGGCTTTGCAATGTTACACATTGG
1 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
* *
788181 TGACGTCCTGGCTTTTCATTGTTATACA-TAA
66 TGGCGTCCTGGCTTTTCATTGTTATACAGT-G
* * * * * * * * * * * *
788212 GCGGAGTCCTGACTTTGTACTGTTACATATTGGAGGCGTTCTGGCTTTGCATTGTCATACATTGA
1 GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
* * * *
788277 TGGAGTCTTGCATGGCTTTGCATTGTTACACATTG
66 TGGCGTC---C-TGGCTTTTCATTGTTATACAGTG
788312 GTGGCGTCCTG
1 GTGGCGTCCTG
788323 ACATTGGTTG
Statistics
Matches: 391, Mismatches: 88, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
92 3 0.01
93 30 0.08
94 31 0.08
95 37 0.09
96 257 0.66
97 4 0.01
99 1 0.00
100 27 0.07
101 1 0.00
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.38
Consensus pattern (96 bp):
GTGGCGTCCTGGCTTTGCATTGTTACACATTGGTGGCGTCCTGGCTTTGCAATGTTACACATTGG
TGGCGTCCTGGCTTTTCATTGTTATACAGTG
Found at i:790509 original size:21 final size:21
Alignment explanation
Indices: 790460--790505 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
790450 CCGCGAACGG
*
790460 GTATTCATAGACCATGAATTT
1 GTATTCATAGACCATCAATTT
*
790481 GTACTCATAGACCATCAATTT
1 GTATTCATAGACCATCAATTT
790502 -TATT
1 GTATT
790506 TCATTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (21 bp):
GTATTCATAGACCATCAATTT
Found at i:791681 original size:2 final size:2
Alignment explanation
Indices: 791674--791718 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
791664 AAGCAACTGA
791674 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
791716 TC T
1 TC T
791719 GTACGCAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:792109 original size:2 final size:2
Alignment explanation
Indices: 792102--792130 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
792092 CACACGAGTA
792102 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
792131 ATATTAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:794868 original size:24 final size:25
Alignment explanation
Indices: 794834--794909 Score: 136
Period size: 25 Copynumber: 3.1 Consensus size: 25
794824 TCTATAAAAA
*
794834 TACTTGCATTAATTCTAAAGTAAAC
1 TACTTGAATTAATTCTAAAGTAAAC
794859 TAC-TGAATTAATTCTAAAGTAAAC
1 TACTTGAATTAATTCTAAAGTAAAC
794883 TACTTGAATTAATTCTAAAGTAAAC
1 TACTTGAATTAATTCTAAAGTAAAC
794908 TA
1 TA
794910 TACAGGAGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 23 0.47
25 26 0.53
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (25 bp):
TACTTGAATTAATTCTAAAGTAAAC
Found at i:796243 original size:166 final size:164
Alignment explanation
Indices: 795900--796275 Score: 556
Period size: 166 Copynumber: 2.3 Consensus size: 164
795890 GGTCCCACTT
* * *
795900 AATTTGAGCTTTTCTGGACTAATAGTTTTTGAGAAGAAGATTTTTAAAGATTTTTTCTATATATT
1 AATTTAAGCTTTTCTGG-CCAATAGTTTTTGAGAAGAAGATTTTTAAAGATTTTCTCTATATATT
* * *
795965 CCTATGTAAAACTTGATCCCCCATTGTGGCCCCTCCCTACCTCCGGGGACCATGATTTGAACAAA
65 CCGATGGAAAACTTGATCCCCCATTGTGGCCCCTCCCTACCTCCAGGGACCATGATTTGAACAAA
* ***
796030 CTTGAATCTACACTACCTGAGGATGCTTCCATTTT
130 CTTGAATCTACACTACCTGAGGATGCCTCCATCAC
* *
796065 AATTTGAGCTTTTCTGGCCAGATAGTTTTTGAGAAGAAGATTTTTAAAGATTTTCTCTGTATATT
1 AATTTAAGCTTTTCTGGCCA-ATAGTTTTTGAGAAGAAGATTTTTAAAGATTTTCTCTATATATT
**
796130 CCGATGGAAAACTTGATCTCCCTTTTGTGGCCCCTCCCTACCTCCAGGGACCATGATTTGAACAA
65 CCGATGGAAAACTTGATC-CCCCATTGTGGCCCCTCCCTACCTCCAGGGACCATGATTTGAACAA
*
796195 ACTTGAATCTACACTTCCTGAGGATGCCTCCA-CAC
129 ACTTGAATCTACACTACCTGAGGATGCCTCCATCAC
*
796230 AAGTTTAAGCTTTTCAGGCCTAATAGTTTTTGAGAAGAAGATTTTT
1 AA-TTTAAGCTTTTCTGGCC-AATAGTTTTTGAGAAGAAGATTTTT
796276 GAAAAATACC
Statistics
Matches: 192, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
164 2 0.01
165 77 0.40
166 112 0.58
167 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (164 bp):
AATTTAAGCTTTTCTGGCCAATAGTTTTTGAGAAGAAGATTTTTAAAGATTTTCTCTATATATTC
CGATGGAAAACTTGATCCCCCATTGTGGCCCCTCCCTACCTCCAGGGACCATGATTTGAACAAAC
TTGAATCTACACTACCTGAGGATGCCTCCATCAC
Found at i:807419 original size:30 final size:30
Alignment explanation
Indices: 807383--807443 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
807373 TCCCTGTATC
807383 ACACTTTATTTAAGGTATTACATAAAAATG
1 ACACTTTATTTAAGGTATTACATAAAAATG
807413 ACACTTTATTTAAGGTATTACATAAAAATG
1 ACACTTTATTTAAGGTATTACATAAAAATG
807443 A
1 A
807444 GATTAAACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (30 bp):
ACACTTTATTTAAGGTATTACATAAAAATG
Found at i:809756 original size:2 final size:2
Alignment explanation
Indices: 809751--809787 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
809741 CTAAAAAAGT
*
809751 AG AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
809788 ATGATCTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:810496 original size:17 final size:17
Alignment explanation
Indices: 810444--812462 Score: 763
Period size: 17 Copynumber: 119.9 Consensus size: 17
810434 GATGAACACT
810444 ATGTACAGTTA-AACATC
1 ATGTACA-TTATAACATC
* *
810461 ATATACA-TATTAACTTC
1 ATGTACATTA-TAACATC
* *
810478 ATGTACATTACAAGATC
1 ATGTACATTATAACATC
*
810495 ATGTACATTATAATATC
1 ATGTACATTATAACATC
* *
810512 TTGTTCATTATAACATC
1 ATGTACATTATAACATC
* *
810529 GTGTACATTATATCATC
1 ATGTACATTATAACATC
* * * *
810546 AAGTGCATAACAACATC
1 ATGTACATTATAACATC
* * *
810563 CTGTTCAGTATAACATC
1 ATGTACATTATAACATC
810580 ATGTACATGTACAGTAAAACATC
1 ATGTACAT-T--A-T--AACATC
*
810603 ATGTACAGATTATATAACATA
1 ATGTAC--A-T-TATAACATC
810624 ATGTACA-TA-AACA-C
1 ATGTACATTATAACATC
810638 TATGTACAGTTA-AACATC
1 -ATGTACA-TTATAACATC
** *
810656 AAATACA-TATTAACTTC
1 ATGTACATTA-TAACATC
810673 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
810690 ATGTACATAATAACATC
1 ATGTACATTATAACATC
*
810707 GTGTACATTATAACATC
1 ATGTACATTATAACATC
* *
810724 ATGTACATTAAAATATC
1 ATGTACATTATAACATC
810741 ATGTACATTATATAACATC
1 ATGTACA-T-TATAACATC
* *
810760 ATATACATGTATGATAAAACATT
1 ATGTACA--T-T-AT--AACATC
*
810783 ATGTACAGATTATATAACATA
1 ATGTAC--A-T-TATAACATC
*
810804 ATGTACAGATTA-AA-ATA
1 ATGTAC--ATTATAACATC
810821 ATGTACAGTTA-AACATC
1 ATGTACA-TTATAACATC
* *
810838 ATATACA-TATTAACTTC
1 ATGTACATTA-TAACATC
*
810855 ACGTACATTATAACATC
1 ATGTACATTATAACATC
* *
810872 GTGTACATTATGACATC
1 ATGTACATTATAACATC
* *
810889 ATGTTCATTATAAAATC
1 ATGTACATTATAACATC
810906 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
810923 ATGTGCATTATAACATC
1 ATGTACATTATAACATC
**
810940 ATACACATGTATGATAAAACATC
1 ATGTACA--T-T-AT--AACATC
*
810963 ATGTACAGATTATATAACATA
1 ATGTAC--A-T-TATAACATC
*
810984 ATGTACAGATTA-AA-ATA
1 ATGTAC--ATTATAACATC
*
811001 ATGTACAGTTA-AACATT
1 ATGTACA-TTATAACATC
* *
811018 ATATACA-TATTAACTTC
1 ATGTACATTA-TAACATC
811035 ATGTACATTAT-ACAATC
1 ATGTACATTATAAC-ATC
* *
811052 ATGTACAGTAAAACATC
1 ATGTACATTATAACATC
*
811069 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
** * *
811084 A-AAACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811098 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
* *
811115 ATATACA-TGT---A-C
1 ATGTACATTATAACATC
* ** *
811127 A-GTAAAACATCACATAC
1 ATGTACATTATAACAT-C
* *
811144 ATGTACAGTAAAACATCATATAC
1 ATGTACA-TTATA-A-C--AT-C
*
811167 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811184 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
** * *
811199 A-AAACATCAT-ATAT-
1 ATGTACATTATAACATC
* *
811213 ATGCACAGTATAACATC
1 ATGTACATTATAACATC
811230 ATGTACATGTACAGTATAACATC
1 ATGTACA--T----TATAACATC
*
811253 ATGTACA-TGT-ACA-C
1 ATGTACATTATAACATC
** * *
811267 -TAAAACATCAT-ATA-C
1 AT-GTACATTATAACATC
811282 ATGTAC-TGTATAACATC
1 ATGTACAT-TATAACATC
*
811299 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811314 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811328 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811345 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811360 AT-AACATCAT-ATAT-
1 ATGTACATTATAACATC
* *
811374 ATGCACAGTATAACATC
1 ATGTACATTATAACATC
811391 ATGTACATGTACAGTATAACATC
1 ATGTACA--T----TATAACATC
*
811414 ATGTACA-TGT-ACA-C
1 ATGTACATTATAACATC
** * *
811428 -TAAAACATCAT-ATA-C
1 AT-GTACATTATAACATC
811443 ATGTAC-TGTATAACATC
1 ATGTACAT-TATAACATC
*
811460 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811475 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811489 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811506 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811521 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811535 ATGTACAGTATAACATCATATAC
1 ATGTACATTAT-A-A-C--AT-C
*
811558 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811575 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811590 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811604 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811621 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811636 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811650 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
* *
811667 ATATACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * **
811682 AT-AACATCAT-GTA-C
1 ATGTACATTATAACATC
*
811696 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
* *
811713 ATATACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811728 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811742 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811759 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811774 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811788 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811805 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811820 AT-AACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811834 ATGTACAGTATAACATC
1 ATGTACATTATAACATC
*
811851 ATATACATGTACAGTAAAACATC
1 ATGTACAT-T--A-T--AACATC
*
811874 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
* * *
811889 AAG-ACATCAT-ATA-C
1 ATGTACATTATAACATC
*
811903 ATGTACAGTATAACATCATGTAC
1 ATGTACATTAT-A-A-CA--T-C
811926 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
811943 ATGTACA-TGT-ACAGT-
1 ATGTACATTATAACA-TC
** * *
811958 A-AAACATCAT-ATA-C
1 ATGTACATTATAACATC
* *
811972 ATGTACAGTATAACATT
1 ATGTACATTATAACATC
* **
811989 ATATACA-TATTAACAGA
1 ATGTACATTA-TAACATC
*
812006 ATGTTCATTATAACATC
1 ATGTACATTATAACATC
812023 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
812040 ATGTACATTAAAACATC
1 ATGTACATTATAACATC
812057 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
812074 ATGTACACTATAACATC
1 ATGTACATTATAACATC
*
812091 ATTTACATTATAACATC
1 ATGTACATTATAACATC
812108 ATGTACATTATAACATC
1 ATGTACATTATAACATC
812125 ATGTACATTATAACATC
1 ATGTACATTATAACATC
* * *
812142 GTGTACAGTATAACATT
1 ATGTACATTATAACATC
* *
812159 ATATACA-TATTAACAGC
1 ATGTACATTA-TAACATC
*
812176 ATGTTCATTATAACATC
1 ATGTACATTATAACATC
812193 ATGTACATTATAACATC
1 ATGTACATTATAACATC
812210 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
812227 ATTTACATTATAACATC
1 ATGTACATTATAACATC
*
812244 ATGTACACTATAACATC
1 ATGTACATTATAACATC
*
812261 ATTTACATTATAACATC
1 ATGTACATTATAACATC
812278 ATGTACATTATAACATC
1 ATGTACATTATAACATC
812295 ATGTACATTATAACATC
1 ATGTACATTATAACATC
812312 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
812329 ATGTACATTATAACATA
1 ATGTACATTATAACATC
812346 ATGTACATTATAACATC
1 ATGTACATTATAACATC
* *
812363 GTGTACACTATAACATC
1 ATGTACATTATAACATC
*
812380 ATTTACATTATAACATC
1 ATGTACATTATAACATC
812397 ATGTACATTATAACATC
1 ATGTACATTATAACATC
812414 ATGTACATTATAACATC
1 ATGTACATTATAACATC
*
812431 ATGTACATTATAACACC
1 ATGTACATTATAACATC
812448 ATGTACATTATAACA
1 ATGTACATTATAACA
812463 NNNNNNNNNN
Statistics
Matches: 1510, Mismatches: 303, Indels: 378
0.69 0.14 0.17
Matches are distributed among these distances:
11 3 0.00
12 3 0.00
13 3 0.00
14 79 0.05
15 222 0.15
16 94 0.06
17 856 0.57
18 34 0.02
19 21 0.01
20 13 0.01
21 51 0.03
22 4 0.00
23 115 0.08
24 7 0.00
25 3 0.00
26 2 0.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (17 bp):
ATGTACATTATAACATC
Found at i:810789 original size:23 final size:21
Alignment explanation
Indices: 810770--810828 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
810760 ATATACATGT
*
810770 ATGATAAAACATTATGTACAG
1 ATGATAAAACATAATGTACAG
* *
810791 ATTATATAACATAATGTACAG
1 ATGATAAAACATAATGTACAG
810812 AT--T-AAA-ATAATGTACAG
1 ATGATAAAACATAATGTACAG
810829 TTAAACATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 11 0.32
18 2 0.06
19 1 0.03
21 20 0.59
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (21 bp):
ATGATAAAACATAATGTACAG
Found at i:810789 original size:180 final size:179
Alignment explanation
Indices: 810493--811076 Score: 786
Period size: 180 Copynumber: 3.2 Consensus size: 179
810483 CATTACAAGA
* * * * * * * *
810493 TCATGTACATTATAATATCTTGTTCATTATAACATCGTGTACATTATATCATCAAGTGCA-TAAC
1 TCATGTACATTATAACATCATGTACATAATAACATCATGTACATTATAACATCATGTACATTAA-
* * * * *
810557 AACATCCTGTTCAGTATAACATCATGTACATGTA-CAGTAAAACATCATGTACAGATTATATAAC
65 AACATCATGTACATTATAACATCATATACATGTATGA-TAAAACATCATGTACAGATTATATAAC
*
810621 ATAATGTAC-A-TAAACACT-ATGTACAGTTAAACATCAAATACATATTAACT
129 ATAATGTACAATTAAA-A-TAATGTACAGTTAAACATCATATACATATTAACT
*
810671 TCATGTACATTATAACATCATGTACATAATAACATCGTGTACATTATAACATCATGTACATTAAA
1 TCATGTACATTATAACATCATGTACATAATAACATCATGTACATTATAACATCATGTACATTAAA
* *
810736 ATATCATGTACATTATATAACATCATATACATGTATGATAAAACATTATGTACAGATTATATAAC
66 ACATCATGTACA-T-TATAACATCATATACATGTATGATAAAACATCATGTACAGATTATATAAC
810801 ATAATGTACAGATTAAAATAATGTACAGTTAAACATCATATACATATTAACT
129 ATAATGTACA-ATTAAAATAATGTACAGTTAAACATCATATACATATTAACT
* * * * * * *
810853 TCACGTACATTATAACATCGTGTACATTATGACATCATGTTCATTATAAAATCATGTACATTATA
1 TCATGTACATTATAACATCATGTACATAATAACATCATGTACATTATAACATCATGTACATTAAA
* *
810918 ACATCATGTGCATTATAACATCATACACATGTATGATAAAACATCATGTACAGATTATATAACAT
66 ACATCATGTACATTATAACATCATATACATGTATGATAAAACATCATGTACAGATTATATAACAT
*
810983 AATGTACAGATTAAAATAATGTACAGTTAAACATTATATACATATTAACT
131 AATGTACA-ATTAAAATAATGTACAGTTAAACATCATATACATATTAACT
811033 TCATGTACATTAT-ACAATCATGTACAGTAA-AACATCATGTACAT
1 TCATGTACATTATAAC-ATCATGTACA-TAATAACATCATGTACAT
811077 GTACAGTAAA
Statistics
Matches: 363, Mismatches: 33, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
178 63 0.17
179 5 0.01
180 186 0.51
181 5 0.01
182 100 0.28
183 4 0.01
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (179 bp):
TCATGTACATTATAACATCATGTACATAATAACATCATGTACATTATAACATCATGTACATTAAA
ACATCATGTACATTATAACATCATATACATGTATGATAAAACATCATGTACAGATTATATAACAT
AATGTACAATTAAAATAATGTACAGTTAAACATCATATACATATTAACT
Found at i:810807 original size:21 final size:21
Alignment explanation
Indices: 810747--810815 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
810737 TATCATGTAC
* *
810747 ATTATATAACATCATATACATG
1 ATTATATAACATAATGTACA-G
* * *
810769 TATGATAAAACATTATGTACAG
1 -ATTATATAACATAATGTACAG
810791 ATTATATAACATAATGTACAG
1 ATTATATAACATAATGTACAG
810812 ATTA
1 ATTA
810816 AAATAATGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 22 0.56
22 1 0.03
23 16 0.41
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.35
Consensus pattern (21 bp):
ATTATATAACATAATGTACAG
Found at i:811077 original size:23 final size:23
Alignment explanation
Indices: 811051--811996 Score: 1534
Period size: 23 Copynumber: 41.1 Consensus size: 23
811041 ATTATACAAT
* *
811051 CATGTACAGTAAAACATCATGTA
1 CATGTACAGTATAACATCATATA
*
811074 CATGTACAGTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
811097 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
* *
811120 CATGTACAGTAAAACATCACATA
1 CATGTACAGTATAACATCATATA
*
811143 CATGTACAGTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811166 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
*
811189 CATGTACAGTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
* * *
811212 TATGCACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
*
811235 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
* *
811258 CATGTACACTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
* *
811281 CATGTACTGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811304 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811327 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811350 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
* * *
811373 TATGCACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
*
811396 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
* *
811419 CATGTACACTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
* *
811442 CATGTACTGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811465 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811488 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811511 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
811534 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811557 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811580 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811603 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811626 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
811649 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811672 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811695 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
811718 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811741 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811764 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811787 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
811810 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
811833 CATGTACAGTATAACATCATATA
1 CATGTACAGTATAACATCATATA
* *
811856 CATGTACAGTAAAACATCATGTA
1 CATGTACAGTATAACATCATATA
811879 CATGTACAGTA-AGACATCATATA
1 CATGTACAGTATA-ACATCATATA
*
811902 CATGTACAGTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
* *
811925 CATGTACATTATAACATCATGTA
1 CATGTACAGTATAACATCATATA
*
811948 CATGTACAGTAAAACATCATATA
1 CATGTACAGTATAACATCATATA
*
811971 CATGTACAGTATAACATTATATA
1 CATGTACAGTATAACATCATATA
811994 CAT
1 CAT
811997 ATTAACAGAA
Statistics
Matches: 859, Mismatches: 62, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
22 1 0.00
23 857 1.00
24 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (23 bp):
CATGTACAGTATAACATCATATA
Found at i:825550 original size:234 final size:233
Alignment explanation
Indices: 825141--825607 Score: 916
Period size: 234 Copynumber: 2.0 Consensus size: 233
825131 AAAAACAATT
825141 CAATAAAGGCGATGATAAAACAGATTCCAACGTCGTTATTCGTTCAAAGATCCGCGTGTAAGTTA
1 CAATAAAGGCGATGATAAAACAGATTCCAACGTCGTTATTCGTTCAAAGATCCGCGTGTAAGTTA
825206 TGACGCCGCCAATATCATTGGTTCTGTTAATGGCGCATTCTACCATGGCAGGGAAATTCGATACC
66 TGACGCCGCCAATATCATTGGTTCTGTTAATGGCGCATTCTACCATGGCAGGGAAATTCGATACC
825271 TATTGTTCTTCACCACTTTCACAACACCCCATCATCTAAAAATTGGTGGCGTTTTACAGTGCCGG
131 TATTGTTCTTCACCACTTTCACAACACCCCATCATCTAAAAATTGGTGGCGTTTTACAGTGCCGG
825336 AAATGTTCCATATTTGTTATCATTGTTTGCACTCGACA
196 AAATGTTCCATATTTGTTATCATTGTTTGCACTCGACA
825374 NCAATAAAGGCGATGATAAAACAGATTCCAACGTCGTTATTCGTTCAAAGATCCGCGTGTAAGTT
1 -CAATAAAGGCGATGATAAAACAGATTCCAACGTCGTTATTCGTTCAAAGATCCGCGTGTAAGTT
825439 ATGACGCCGCCAATATCATTGGTTCTGTTAATGGCGCATTCTACCATGGCAGGGAAATTCGATAC
65 ATGACGCCGCCAATATCATTGGTTCTGTTAATGGCGCATTCTACCATGGCAGGGAAATTCGATAC
*
825504 CTTTTGTTCTTCACCACTTTCACAACACCCCATCATCTAAAAATTGGTGGCGTTTTACAGTGCCG
130 CTATTGTTCTTCACCACTTTCACAACACCCCATCATCTAAAAATTGGTGGCGTTTTACAGTGCCG
825569 GAAATGTTCCATATTTGTTATCATTGTTTGCACTCGACA
195 GAAATGTTCCATATTTGTTATCATTGTTTGCACTCGACA
825608 GATCCGGAAA
Statistics
Matches: 232, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 232 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (233 bp):
CAATAAAGGCGATGATAAAACAGATTCCAACGTCGTTATTCGTTCAAAGATCCGCGTGTAAGTTA
TGACGCCGCCAATATCATTGGTTCTGTTAATGGCGCATTCTACCATGGCAGGGAAATTCGATACC
TATTGTTCTTCACCACTTTCACAACACCCCATCATCTAAAAATTGGTGGCGTTTTACAGTGCCGG
AAATGTTCCATATTTGTTATCATTGTTTGCACTCGACA
Found at i:826993 original size:2 final size:2
Alignment explanation
Indices: 826986--827036 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
826976 CAGTATGATG
826986 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
827028 CT CT CT CT C
1 CT CT CT CT C
827037 AGATTGATCC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:827943 original size:21 final size:21
Alignment explanation
Indices: 827919--827958 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
827909 GTTTTCCTGT
827919 TGTTTGTGATTTTT-TTATTGG
1 TGTTT-TGATTTTTATTATTGG
*
827940 TGTTTTGTTTTTTATTATT
1 TGTTTTGATTTTTATTATT
827959 ATTTTTTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.72
Consensus pattern (21 bp):
TGTTTTGATTTTTATTATTGG
Found at i:831362 original size:22 final size:22
Alignment explanation
Indices: 831336--831377 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
831326 GTTAAAAAGG
831336 TGACGTCACAATGCATTAAATA
1 TGACGTCACAATGCATTAAATA
831358 TGACGTCACAATGCATTAAA
1 TGACGTCACAATGCATTAAA
831378 AACCTAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (22 bp):
TGACGTCACAATGCATTAAATA
Found at i:833530 original size:68 final size:68
Alignment explanation
Indices: 833421--833555 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
833411 TCTGGGTATA
* *
833421 CCTGGGTAATTAATATTGTATTTTAAAACTACCTTTTATACCAAGGTCTCATTTATGTCCATTTC
1 CCTGGGTAACTAATATTGTATTTTAAAACTACCTTTTATACCAAGGTCTAATTTATGTCCATTTC
833486 TAG
66 TAG
833489 CCTGGGTAACTAATATTGTATTTTAAAACTAACC-TTTATACCAAGGTCTAATTTATGTCCATTT
1 CCTGGGTAACTAATATTGTATTTTAAAACT-ACCTTTTATACCAAGGTCTAATTTATGTCCATTT
833553 CTA
65 CTA
833556 ATCCAAGCTC
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 61 0.95
69 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (68 bp):
CCTGGGTAACTAATATTGTATTTTAAAACTACCTTTTATACCAAGGTCTAATTTATGTCCATTTC
TAG
Found at i:840697 original size:2 final size:2
Alignment explanation
Indices: 840690--840727 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
840680 NNNNNNNNNN
840690 GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A CGA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -GA GA GA GA
840728 ACGAGAAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:841501 original size:11 final size:11
Alignment explanation
Indices: 841485--841527 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
841475 AGCAATATCC
841485 AAGTAAACCCA
1 AAGTAAACCCA
*
841496 AAGTAAACCCC
1 AAGTAAACCCA
*
841507 GAGTAAACCCA
1 AAGTAAACCCA
841518 AAGTAAACCC
1 AAGTAAACCC
841528 CGAGTGGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.49, C:0.30, G:0.12, T:0.09
Consensus pattern (11 bp):
AAGTAAACCCA
Found at i:841514 original size:22 final size:22
Alignment explanation
Indices: 841486--841532 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
841476 GCAATATCCA
841486 AGTAAACCCAAAGTAAACCCCG
1 AGTAAACCCAAAGTAAACCCCG
841508 AGTAAACCCAAAGTAAACCCCG
1 AGTAAACCCAAAGTAAACCCCG
841530 AGT
1 AGT
841533 GGACCAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.45, C:0.30, G:0.15, T:0.11
Consensus pattern (22 bp):
AGTAAACCCAAAGTAAACCCCG
Found at i:843214 original size:40 final size:38
Alignment explanation
Indices: 843170--843520 Score: 403
Period size: 40 Copynumber: 9.2 Consensus size: 38
843160 ATTTATTCTC
*
843170 TATATTATACAACCTGTAGGGCCGTCTATATATTGTATTA
1 TATATTATACAACCTGTAGGGCC-ACTATATATT-TATTA
843210 TATATTATACAACCTGTAGGGCCCACTATATA--TA--A
1 TATATTATACAACCTGTAGGG-CCACTATATATTTATTA
*
843245 TATGTTATACAACCTGTAGGGCCCACTATATATTATATTA
1 TATATTATACAACCTGTAGGG-CCACTATATATT-TATTA
843285 TATATATCATACAACCTGTAGGGCC-C-ACTATA--TATTA
1 TATAT-T-ATACAACCTGTAGGGCCACTA-TATATTTATTA
843322 TATATTATACAACCTGTAGGGCCTACTATATATTATATTA
1 TATATTATACAACCTGTAGGGCC-ACTATATATT-TATTA
843362 TATATTATACAACCTGTAGGGCC-C-ACTATA--TATTA
1 TATATTATACAACCTGTAGGGCCACTA-TATATTTATTA
843397 TATATTATACAACCTGTAGGGCCCACTATATATTATATTA
1 TATATTATACAACCTGTAGGG-CCACTATATATT-TATTA
843437 TATATTATACAACCTGTAGGGCC-C-ACTATA--TATTA
1 TATATTATACAACCTGTAGGGCCACTA-TATATTTATTA
*
843472 TATATTATACAACCTGTAGGGCCCACTTTATATTATATTA
1 TATATTATACAACCTGTAGGG-CCACTATATATT-TATTA
843512 T-TGATTATA
1 TAT-ATTATA
843521 TTACTGTGGA
Statistics
Matches: 277, Mismatches: 4, Indels: 60
0.81 0.01 0.18
Matches are distributed among these distances:
35 101 0.36
36 5 0.02
37 29 0.10
38 14 0.05
39 4 0.01
40 104 0.38
41 5 0.02
42 15 0.05
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (38 bp):
TATATTATACAACCTGTAGGGCCACTATATATTTATTA
Found at i:843253 original size:35 final size:35
Alignment explanation
Indices: 843170--843512 Score: 402
Period size: 35 Copynumber: 9.2 Consensus size: 35
843160 ATTTATTCTC
**
843170 TATATTATACAACCTGTAGGGCCGTCTATATATTGTATTA
1 TATATTATACAACCTGTAGGGCCCACTATATA---TA--A
843210 TATATTATACAACCTGTAGGGCCCACTATATATAA
1 TATATTATACAACCTGTAGGGCCCACTATATATAA
*
843245 TATGTTATACAACCTGTAGGGCCCACTATATATTATATTA
1 TATATTATACAACCTGTAGGGCCCAC--TATA-TATA--A
*
843285 TATATATCATACAACCTGTAGGGCCCACTATATATTA
1 TATAT-T-ATACAACCTGTAGGGCCCACTATATATAA
*
843322 TATATTATACAACCTGTAGGGCCTACTATATATTATATTA
1 TATATTATACAACCTGTAGGGCCCAC--TATA-TATA--A
*
843362 TATATTATACAACCTGTAGGGCCCACTATATATTA
1 TATATTATACAACCTGTAGGGCCCACTATATATAA
843397 TATATTATACAACCTGTAGGGCCCACTATATATTATATTA
1 TATATTATACAACCTGTAGGGCCCAC--TATA-TATA--A
*
843437 TATATTATACAACCTGTAGGGCCCACTATATATTA
1 TATATTATACAACCTGTAGGGCCCACTATATATAA
*
843472 TATATTATACAACCTGTAGGGCCCACT-T-TATAT
1 TATATTATACAACCTGTAGGGCCCACTATATATAA
843505 TATATTAT
1 TATATTAT
843513 TGATTATATT
Statistics
Matches: 273, Mismatches: 13, Indels: 41
0.83 0.04 0.13
Matches are distributed among these distances:
33 11 0.04
34 1 0.00
35 100 0.37
36 1 0.00
37 26 0.10
38 18 0.07
39 3 0.01
40 92 0.34
41 1 0.00
42 20 0.07
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (35 bp):
TATATTATACAACCTGTAGGGCCCACTATATATAA
Found at i:843317 original size:75 final size:74
Alignment explanation
Indices: 843170--843520 Score: 578
Period size: 75 Copynumber: 4.7 Consensus size: 74
843160 ATTTATTCTC
** *
843170 TATATTATACAACCTGTAGGGCCGTCTATATATTGTATTATATATTATACAACCTGTAGGGCCCA
1 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
843235 CTATATATAA
66 CTATATAT-A
*
843245 TATGTTATACAACCTGTAGGGCCCACTATATATTATATTATATATATCATACAACCTGTAGGGCC
1 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATAT-T-ATACAACCTGTAGGGCC
843310 CACTATATATTA
64 CACTATATA-TA
*
843322 TATATTATACAACCTGTAGGGCCTACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
1 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
843387 CTATATATTA
66 CTATATA-TA
843397 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
1 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
843462 CTATATATTA
66 CTATATA-TA
*
843472 TATATTATACAACCTGTAGGGCCCACTTTATATTATATTAT-TGATTATA
1 TATATTATACAACCTGTAGGGCCCACTATATATTATATTATAT-ATTATA
843521 TTACTGTGGA
Statistics
Matches: 264, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
74 1 0.00
75 190 0.72
76 2 0.01
77 70 0.27
78 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (74 bp):
TATATTATACAACCTGTAGGGCCCACTATATATTATATTATATATTATACAACCTGTAGGGCCCA
CTATATATA
Found at i:844175 original size:59 final size:59
Alignment explanation
Indices: 844016--844193 Score: 194
Period size: 59 Copynumber: 2.9 Consensus size: 59
844006 CAGTTTTCTA
* * **** ** *
844016 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTACTATTATTCTGAAAAATTTTCAAATTTCTT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTATTCT---TCGGTTTC-TTTTTATT
* * *
844079 ATTAGGGTCTTCCGTTTCCAACGGAAGACCCTCTTGTTATTCTTCGGTTTCTTTTTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTATTCTTCGGTTTCTTTTTATT
* *
844138 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTTTTCTTCGGTTTTTTTTT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTATTCTTCGGTTTCTTTTT
844194 CTCATTCTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
59 56 0.57
60 4 0.04
63 38 0.39
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.45
Consensus pattern (59 bp):
ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATTGTTATTCTTCGGTTTCTTTTTATT
Found at i:845701 original size:2 final size:2
Alignment explanation
Indices: 845694--845728 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
845684 NNNNNNNNNN
845694 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
845729 TATTAATCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:846506 original size:34 final size:34
Alignment explanation
Indices: 846463--846534 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
846453 CTCCTTTTTT
846463 TTTTACAATTAATTGTATACATTATATGTATATA
1 TTTTACAATTAATTGTATACATTATATGTATATA
846497 TTTTACAATTAATTGTATACATTATATGTATATA
1 TTTTACAATTAATTGTATACATTATATGTATATA
846531 TTTT
1 TTTT
846535 GGTCTTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (34 bp):
TTTTACAATTAATTGTATACATTATATGTATATA
Found at i:846771 original size:2 final size:2
Alignment explanation
Indices: 846764--846866 Score: 179
Period size: 2 Copynumber: 51.5 Consensus size: 2
846754 CAAACGTGGA
*
846764 CT CT CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
846806 CT GT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
846848 CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT C
846867 CATAGATAGA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 95 1.00
ACGTcount: A:0.00, C:0.48, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:847944 original size:2 final size:2
Alignment explanation
Indices: 847937--847983 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
847927 TTAAAACCAA
** * *
847937 TC TC TC TC TC TC AA TC TC TC TT TC TC TC TC TC TC TA TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
847979 TC TC T
1 TC TC T
847984 GTGTAATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.06, C:0.43, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Done.