oyster.v9_M.fa.s56.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold241
Parameters: 2 7 7 80 10 50 500
Length:  1040028

Tables:   1   2   3   

This is table  3  of  3  ( 317 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830298--831042	353	2.1	352	84	3	960	23	17	25	33	1.96
832434--832468	15	2.3	15	90	0	52	37	5	11	45	1.64
832511--832951	220	2.0	219	99	0	864	37	6	10	44	1.65
833002--833040	10	3.9	10	86	0	51	48	17	0	33	1.48
833403--833447	16	2.9	15	84	12	56	31	11	28	28	1.91
847056--847143	33	2.7	33	90	0	140	27	14	21	36	1.93
855683--855731	22	2.2	22	85	0	71	40	16	26	16	1.89
864414--864452	18	2.2	18	85	0	51	35	38	2	23	1.68
864585--864661	23	3.1	23	77	15	73	32	33	9	24	1.87
864574--864664	29	3.1	28	79	3	74	30	34	9	25	1.88
867627--867676	2	25.0	2	100	0	100	50	0	50	0	1.00
873882--874020	21	6.6	21	74	0	125	29	17	20	31	1.96
873888--874034	42	3.5	42	88	0	186	27	18	20	34	1.96
873928--874036	21	5.2	20	76	8	92	23	19	20	36	1.95
875571--875611	2	21.0	2	95	5	75	48	0	51	0	1.00
877668--877815	38	3.9	38	96	0	269	27	18	19	35	1.95
878525--878553	14	2.1	14	100	0	58	34	41	13	10	1.79
885240--885324	18	4.6	18	81	9	100	2	47	1	49	1.22
885240--885302	2	31.5	2	93	0	108	0	50	0	49	1.00
894854--894910	21	2.7	20	76	10	60	31	17	12	38	1.87
912656--912683	2	14.0	2	100	0	56	50	0	50	0	1.00
931147--931202	4	14.0	4	92	0	58	1	33	23	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931147--931206	12	5.0	12	81	0	66	1	35	23	40	1.65
931233--931836	167	3.6	167	91	1	989	29	18	14	36	1.91
931233--931836	333	1.8	333	95	0	1091	29	18	14	36	1.91
931700--931971	135	2.0	135	99	0	535	30	19	15	34	1.93
931835--932494	166	4.0	166	90	1	1054	28	17	15	39	1.90
931836--932494	331	2.0	332	92	1	1090	28	17	15	39	1.90
936533--936720	37	5.1	37	90	0	286	50	23	12	13	1.76
954172--954249	25	3.0	25	89	10	129	39	11	24	24	1.88
954172--954244	28	2.7	27	93	6	123	39	10	24	24	1.87
958440--958469	12	2.5	12	100	0	60	20	56	0	23	1.42
958460--958495	18	2.0	18	100	0	72	22	66	0	11	1.22
958806--959513	44	17.0	44	88	7	922	22	15	19	42	1.89
958806--959489	124	5.5	122	85	9	807	22	16	19	41	1.90
962390--962446	28	2.0	28	89	0	87	33	10	12	43	1.76
964473--964515	13	3.6	12	87	9	61	0	0	11	88	0.52
964466--964515	25	2.1	23	81	7	55	0	0	18	82	0.68
964477--964516	18	2.2	18	90	0	62	0	0	12	87	0.54
965978--966069	22	4.2	22	73	8	89	9	41	16	32	1.81
970468--970509	2	21.0	2	100	0	84	0	50	0	50	1.00
970689--970729	16	2.6	16	84	11	57	17	43	4	34	1.70
971243--971279	2	18.5	2	94	0	65	45	2	0	51	1.15
971661--971712	2	26.0	2	92	7	88	50	0	48	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973503--974404	166	5.5	166	89	3	1316	33	16	23	26	1.96
974758--974804	16	3.1	16	84	6	53	25	12	31	29	1.93
976408--976432	4	6.2	4	100	0	50	76	0	0	24	0.80
976430--976462	2	16.5	2	100	0	66	51	0	0	48	1.00
979033--979144	59	1.9	58	94	1	197	38	8	15	38	1.77
979059--979148	28	3.1	29	71	18	87	36	7	14	41	1.75
979787--979818	16	2.0	16	93	0	55	34	0	6	59	1.23
984051--984111	21	2.9	21	69	13	54	21	27	13	37	1.90
984053--984148	42	2.3	42	89	3	140	20	27	13	38	1.90
984084--984148	21	3.1	20	70	16	60	18	27	15	38	1.91
985184--985229	8	5.9	8	87	2	58	0	36	26	36	1.57
985184--985236	12	4.8	12	78	19	62	0	35	26	37	1.57
985191--985236	20	2.3	20	96	0	83	0	36	26	36	1.57
985406--986626	166	7.2	166	90	3	1632	32	15	26	25	1.95
985406--986626	336	3.6	335	88	5	1626	32	15	26	25	1.95
986042--986626	174	3.3	174	94	1	974	33	13	27	26	1.94
989761--990347	166	3.5	166	93	1	980	38	18	16	26	1.92
996378--996441	2	32.0	2	100	0	128	0	50	0	50	1.00
1009142--1009185	18	2.5	17	82	10	52	25	4	18	52	1.64
1017139--1017170	1	32.0	1	100	0	64	0	100	0	0	0.00
1024945--1024971	13	2.1	13	100	0	54	51	7	25	14	1.68
1029754--1029792	2	19.5	2	100	0	78	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031052--1031102	21	2.4	21	87	6	68	49	27	13	9	1.74
1032432--1032502	21	3.4	21	76	0	79	39	14	19	26	1.90
1032581--1032688	21	5.1	21	82	0	126	29	19	13	37	1.91
1032687--1032897	21	10.0	21	75	7	178	37	15	13	33	1.86
1032980--1033065	21	4.1	21	83	0	109	27	16	12	43	1.84
1034092--1034660	146	3.9	146	82	2	687	29	20	18	31	1.96
1036378--1036436	2	29.5	2	100	0	118	0	0	49	50	1.00
1038139--1038203	1	65.0	1	100	0	130	0	0	0	100	0.00
1038088--1038157	34	2.1	33	86	5	104	15	10	1	71	1.19
1039152--1039191	20	2.0	20	90	4	64	22	15	7	55	1.65
1039982--1040019	20	1.9	20	94	0	67	42	15	18	23	1.89

Tables:   1   2   3

The End!