Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold107 Parameters: 2 7 7 80 10 50 500 Length: 1028272

Tables:   1   2   3   

This is table  2  of  3  ( 334 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
354448--354480
15
2.2
15
89
10
50
39
3
15
42
1.62
366269--366326
28
2.1
28
100
0
116
48
10
13
27
1.75
372667--372693
14
1.9
14
100
0
54
40
7
7
44
1.60
375437--375498
30
2.1
30
100
0
124
41
11
27
19
1.85
377322--377360
16
2.4
16
91
0
60
89
0
10
0
0.48
377322--377360
19
2.1
19
90
4
62
89
0
10
0
0.48
378234--378268
2
17.5
2
100
0
70
48
0
51
0
1.00
378615--378651
5
7.8
5
88
11
60
0
0
16
83
0.64
378620--378663
13
3.4
13
84
12
63
0
2
13
84
0.73
378601--378659
18
3.2
18
92
2
91
0
1
16
81
0.78
378613--378663
23
2.3
21
87
9
75
0
1
13
84
0.71
391420--391458
16
2.4
16
95
0
69
17
12
35
33
1.88
400564--400594
16
1.9
16
93
0
53
25
16
12
45
1.83
403911--404007
49
2.0
47
88
9
144
38
10
12
39
1.77
416464--416498
16
2.2
16
100
0
70
40
0
11
48
1.39
417868--417901
2
17.0
2
100
0
68
50
0
50
0
1.00
418296--418631
182
1.8
182
90
0
546
41
9
16
31
1.81
420028--420238
88
2.4
88
93
0
359
32
17
19
31
1.95
425110--425231
6
20.3
6
76
0
100
27
26
5
40
1.79
425109--425219
27
4.0
27
82
11
125
27
26
6
40
1.80
425123--425232
27
4.0
27
79
6
112
29
24
6
40
1.80
425322--425378
21
2.7
21
83
5
71
31
24
1
42
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
429115--429199
42
2.0
43
90
2
136
30
9
4
55
1.52
430731--430766
2
18.0
2
100
0
72
50
0
0
50
1.00
432420--432595
58
3.0
57
90
3
271
35
19
12
32
1.89
433524--433567
23
2.0
22
95
4
79
45
15
4
34
1.67
434217--434248
3
10.7
3
100
0
64
34
0
0
65
0.93
435063--435134
4
18.2
4
72
16
53
70
4
0
25
1.04
435063--435114
15
3.5
15
84
2
61
75
3
0
21
0.97
440477--440515
18
2.2
18
95
0
69
38
2
17
41
1.64
449810--449843
16
2.1
17
88
5
52
2
8
11
76
1.12
455626--455715
29
3.1
29
98
0
171
16
25
24
33
1.96
457212--457250
20
1.9
21
89
5
62
66
17
0
15
1.25
457217--457251
17
2.1
16
89
5
52
68
20
0
11
1.20
458504--458533
5
5.8
5
92
7
51
40
16
0
43
1.48
460621--460669
2
24.5
2
100
0
98
0
48
0
51
1.00
464246--464276
1
31.0
1
100
0
62
0
0
100
0
0.00
464390--464414
2
12.5
2
100
0
50
48
52
0
0
1.00
467603--467638
17
2.1
17
100
0
72
50
5
5
38
1.49
476018--476050
14
2.4
14
94
0
57
24
3
0
72
0.98
478474--479906
437
3.3
437
93
0
2465
37
15
16
30
1.90
481006--481038
2
16.5
2
100
0
66
51
0
48
0
1.00
484814--484849
15
2.4
15
100
0
72
41
30
8
19
1.81
484919--484966
21
2.3
21
85
7
62
41
25
4
29
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
487864--488093
115
2.0
115
93
0
388
31
16
21
29
1.96
488484--488533
2
25.0
2
100
0
100
50
0
50
0
1.00
492811--492920
28
4.0
29
90
6
167
22
15
19
42
1.88
492811--492920
57
2.0
54
91
5
175
22
15
19
42
1.88
495906--496141
81
2.9
78
76
14
223
44
15
20
19
1.87
497069--497214
48
3.0
48
85
0
211
30
23
22
23
1.99
501559--501600
20
2.1
20
90
0
66
42
21
4
30
1.73
502156--502193
19
1.9
20
89
5
60
42
34
5
18
1.73
502473--502520
19
2.5
19
96
0
87
29
41
4
25
1.74
503302--503339
1
38.0
1
100
0
76
100
0
0
0
0.00
506107--506134
14
2.0
14
100
0
56
42
21
14
21
1.88
510407--510460
2
27.0
2
100
0
108
0
50
0
50
1.00
513892--513942
13
4.2
13
74
20
56
47
3
0
49
1.20
513892--513950
13
4.4
14
75
14
52
47
5
0
47
1.24
514253--514307
22
2.5
22
93
0
92
9
16
30
43
1.79
514791--514844
20
2.5
21
82
11
65
53
1
0
44
1.11
514791--514843
10
5.0
10
82
11
52
52
1
0
45
1.11
516331--516359
13
2.2
13
100
0
58
37
10
20
31
1.86
517665--517703
3
13.0
3
100
0
78
33
0
33
33
1.58
518203--518417
92
2.3
92
88
0
313
37
20
19
22
1.94
519589--519619
16
1.9
16
93
0
53
29
19
48
3
1.64
521753--521837
17
5.4
17
64
25
51
30
11
17
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521751--521969
31
6.9
31
77
8
215
29
12
15
42
1.84
521793--521847
17
3.4
17
73
14
62
32
14
14
38
1.87
521761--521943
99
1.8
99
88
0
276
28
12
15
42
1.84
522856--523162
28
11.0
28
98
0
578
18
17
24
38
1.93
531902--532243
170
2.0
170
100
0
684
39
18
12
29
1.87
533466--533510
2
22.5
2
100
0
90
0
51
0
48
1.00
533689--533734
1
46.0
1
100
0
92
100
0
0
0
0.00
541735--541770
2
17.5
2
88
5
54
5
0
44
50
1.25
553604--553635
15
2.1
15
100
0
64
40
0
34
25
1.56
555649--555696
4
12.0
4
86
0
60
29
25
41
4
1.74
555640--555687
12
4.0
12
83
0
60
33
25
39
2
1.67
558903--558937
18
1.9
18
100
0
70
34
5
22
37
1.78
563844--563872
1
29.0
1
100
0
58
0
0
100
0
0.00
568784--568812
1
29.0
1
100
0
58
0
0
100
0
0.00
569069--569152
44
1.9
44
97
0
159
27
20
14
38
1.91
569640--569676
2
18.5
2
100
0
74
51
0
48
0
1.00
570890--570935
2
23.0
2
100
0
92
50
0
50
0
1.00
571307--571344
6
6.3
6
88
11
60
0
31
50
18
1.47
571482--571830
181
1.9
178
84
5
463
23
16
25
33
1.96
572489--572531
20
2.1
20
91
0
68
39
4
13
41
1.66
572592--572645
28
1.9
28
85
14
76
29
1
16
51
1.55
572773--572974
15
12.5
15
70
14
84
37
5
12
44
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
577469--577495
14
1.9
14
100
0
54
51
14
3
29
1.60
592333--592370
19
2.0
19
94
0
67
28
23
0
47
1.52
594291--594381
36
2.5
36
92
3
157
25
18
18
37
1.94
602989--603048
2
30.0
2
100
0
120
50
0
50
0
1.00
603112--603141
2
15.0
2
100
0
60
50
0
50
0
1.00
604599--604647
23
2.4
19
73
23
53
36
16
22
24
1.94
604604--604652
23
2.1
23
96
0
89
42
16
24
16
1.87
631674--631739
2
33.0
2
96
0
123
0
48
0
51
1.00
634153--634188
2
18.0
2
94
0
63
52
0
47
0
1.00
642368--642408
16
2.5
17
88
8
66
19
0
26
53
1.45
653674--653702
2
14.5
2
100
0
58
0
51
0
48
1.00
653702--653743
2
21.0
2
100
0
84
50
50
0
0
1.00
657480--657532
27
2.0
27
92
0
88
30
16
20
32
1.95
674484--674525
18
2.3
18
87
0
66
35
35
14
14
1.86
676677--676757
40
2.0
40
97
0
153
39
16
18
25
1.91
676900--678802
166
11.5
166
87
2
2588
33
15
24
26
1.95
676900--678802
495
3.8
494
87
3
2618
33
15
24
26
1.95
679751--679775
10
2.5
10
100
0
50
40
0
60
0
0.97
689299--689342
21
2.1
21
100
0
88
38
9
13
38
1.77
692122--692146
11
2.3
11
100
0
50
16
20
0
64
1.30
693305--693335
2
15.5
2
93
0
53
48
0
48
3
1.17
697470--697498
9
3.2
9
100
0
58
31
10
20
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
703584--704389
435
1.9
434
91
1
1330
37
16
16
28
1.91
709724--709769
22
2.1
22
95
0
83
39
17
23
19
1.92
710664--710697
11
3.1
11
95
0
59
47
29
8
14
1.75
711719--711761
11
3.9
11
87
0
68
30
32
9
27
1.88
712638--712731
21
4.4
21
75
1
80
17
21
17
44
1.86
712619--712731
42
2.7
42
88
1
154
18
22
15
43
1.88
712659--712750
21
4.3
21
79
2
94
19
25
15
40
1.90
735760--735825
20
3.4
20
85
4
89
24
16
13
45
1.84
735716--735874
41
3.9
41
80
4
178
28
17
14
39
1.89
735715--735870
80
1.9
81
89
1
242
27
17
14
40
1.88

Tables:   1   2   3