oyster.v9_M.fa.s59.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold448
Parameters: 2 7 7 80 10 50 500
Length:  1018568

Tables:   1   2   3   

This is table  2  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478174--478210	16	2.3	16	90	0	56	32	16	21	29	1.95
484684--484772	4	22.2	4	100	0	178	24	24	0	50	1.49
491847--491871	12	2.1	12	100	0	50	52	0	16	32	1.44
498130--498193	2	32.5	2	95	3	103	54	0	45	0	0.99
499693--500568	446	2.0	440	89	5	1321	36	17	13	31	1.89
504577--504721	10	13.9	10	75	12	98	18	18	40	22	1.91
504577--504720	42	3.4	42	98	0	270	18	18	40	22	1.92
504577--504815	84	2.8	83	87	3	291	23	15	38	22	1.93
504577--504816	42	5.7	41	83	6	248	23	15	38	22	1.93
504692--504857	43	3.9	40	73	19	115	29	12	34	23	1.91
504799--504857	21	2.8	21	80	12	66	32	11	32	23	1.91
507677--507719	22	2.0	22	90	0	68	37	6	13	41	1.72
507707--507805	19	4.8	19	73	20	74	41	8	13	37	1.74
507687--507805	41	2.9	41	81	7	134	40	8	12	38	1.74
507687--507760	22	3.5	20	80	10	78	37	10	13	37	1.80
507700--507836	42	3.3	41	75	9	125	37	9	13	39	1.78
518300--518438	4	35.5	4	88	7	214	52	0	23	24	1.47
521932--521975	20	2.2	20	88	8	63	38	20	38	2	1.65
522168--522675	164	3.1	165	87	5	726	28	16	14	39	1.89
527135--527203	33	2.1	33	94	0	120	30	8	11	49	1.69
539116--539158	2	21.5	2	90	0	68	0	53	0	46	1.00
539116--539158	14	3.1	14	96	0	77	0	53	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543429--543465	2	18.5	2	100	0	74	0	51	0	48	1.00
544685--544738	2	27.0	2	96	0	99	51	0	48	0	1.00
549843--549991	4	37.2	4	94	0	262	52	0	22	24	1.47
574464--574505	12	3.5	12	90	0	66	50	19	30	0	1.48
574468--574502	4	8.8	4	87	0	52	51	22	25	0	1.48
574683--574733	2	25.5	2	100	0	102	0	50	0	49	1.00
577146--577212	7	9.6	7	80	0	80	26	20	14	37	1.92
577146--577212	21	3.2	21	84	0	89	26	20	14	37	1.92
578605--578683	4	19.8	4	100	0	158	50	0	24	25	1.49
597071--597109	19	2.1	19	90	0	60	30	10	17	41	1.83
600094--600123	14	2.2	14	94	5	53	26	0	10	63	1.26
603360--603399	12	3.3	12	82	0	53	40	25	32	2	1.69
608379--608465	45	1.9	45	81	4	104	48	13	6	31	1.69
615247--615277	12	2.6	12	94	0	53	77	9	0	12	0.99
626871--626921	22	2.3	23	86	10	70	15	19	17	47	1.83
628039--628097	28	2.1	28	96	0	109	42	13	6	37	1.71
635156--635223	31	2.2	31	82	10	77	27	13	14	44	1.83
639176--639209	2	17.0	2	100	0	68	50	0	50	0	1.00
647653--647817	85	2.0	84	96	0	294	36	13	15	33	1.87
654807--654843	2	18.5	2	100	0	74	51	0	48	0	1.00
661724--662619	448	2.0	447	98	0	1747	29	17	15	37	1.91
663561--663617	2	28.5	2	100	0	114	49	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668637--668664	1	28.0	1	100	0	56	0	100	0	0	0.00
673522--673563	22	2.0	21	85	4	57	28	16	11	42	1.84
682146--682210	32	2.0	33	90	6	105	44	9	6	40	1.61
704878--705282	143	2.8	144	87	2	544	30	17	21	30	1.97
705607--705646	10	4.0	10	93	0	71	42	30	17	10	1.82
705748--705773	12	2.2	12	100	0	52	34	30	26	7	1.85
707885--708269	162	2.4	160	81	8	429	35	14	21	28	1.93
708161--708444	150	1.9	147	81	10	346	32	13	22	30	1.93
717179--717205	2	13.5	2	100	0	54	51	0	0	48	1.00
717233--717263	2	15.5	2	93	0	53	51	0	0	48	1.00
733834--733901	28	2.4	28	82	4	84	42	1	47	8	1.43
733741--733877	2	68.5	2	85	0	184	47	0	50	2	1.13
735834--736112	150	1.9	150	90	1	443	32	16	21	29	1.96
736658--736684	13	2.1	13	100	0	54	40	29	7	22	1.81
738051--738095	5	8.8	5	92	7	65	0	0	17	82	0.68
738109--738316	104	2.0	101	95	2	371	30	8	19	42	1.80
746520--746561	8	5.4	8	88	5	68	0	38	26	35	1.57
746521--746558	4	9.8	4	82	5	51	0	42	26	31	1.56
747765--747815	23	2.2	23	82	6	59	37	25	9	27	1.87
748064--748572	166	3.1	163	84	4	664	33	16	24	25	1.96
753598--753628	2	15.5	2	100	0	62	48	0	0	51	1.00
755599--756125	145	3.6	145	85	3	695	29	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758725--759243	169	3.1	168	79	8	556	31	15	19	33	1.93
761673--761719	12	4.2	12	74	20	57	0	34	25	40	1.56
761681--761722	20	2.1	20	95	0	75	0	35	26	38	1.57
761673--761722	16	3.1	16	86	11	75	0	34	26	40	1.56
761746--762261	166	3.1	166	91	1	811	30	16	14	37	1.89
768637--769020	163	2.4	163	84	4	422	32	17	14	35	1.90
773022--773579	172	3.2	172	79	7	551	32	13	27	26	1.94
773666--774123	179	2.6	179	91	0	756	30	15	18	35	1.92
776534--777024	168	2.9	167	88	4	702	31	18	17	32	1.94
777506--778807	164	7.9	164	84	5	1559	27	24	15	33	1.95
778845--779922	164	6.5	165	85	5	1238	26	25	15	32	1.95
778880--779916	329	3.1	327	84	6	1297	26	25	15	32	1.95
780228--780645	167	2.5	164	92	1	665	32	15	20	31	1.94
782219--782310	45	2.0	45	100	0	184	17	21	34	26	1.95
783593--783888	33	9.0	33	97	2	560	29	18	18	34	1.94
786202--786241	2	20.0	2	100	0	80	0	50	0	50	1.00
789170--789205	17	2.1	17	89	0	54	44	8	19	27	1.79
799541--799570	14	2.1	14	100	0	60	16	26	6	50	1.70
823641--823704	1	64.0	1	96	0	119	0	1	0	98	0.12
826180--826386	21	9.9	21	78	7	224	32	22	20	24	1.98
826180--826385	42	4.9	42	86	2	306	32	22	20	24	1.98
826454--826499	24	2.0	23	83	12	58	63	4	2	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
827255--827523	21	12.8	21	88	4	341	23	19	23	33	1.97
837602--837628	13	2.1	13	100	0	54	37	7	7	48	1.59
839923--839958	2	18.0	2	100	0	72	0	50	0	50	1.00
841164--841205	2	21.0	2	100	0	84	50	0	50	0	1.00
843347--843378	1	32.0	1	100	0	64	100	0	0	0	0.00
848598--848636	2	19.5	2	100	0	78	0	48	0	51	1.00
865857--865906	24	2.1	24	100	0	100	24	28	24	24	2.00
866829--866940	40	2.8	40	83	0	143	39	10	19	30	1.86
870126--870159	8	4.4	8	92	7	61	38	26	35	0	1.57
871782--871809	2	14.0	2	100	0	56	0	50	0	50	1.00
880015--880083	21	3.2	22	87	8	106	4	52	0	43	1.21
880043--880117	34	2.2	34	87	0	105	6	49	0	44	1.28
880077--880128	21	2.3	22	80	16	61	5	44	0	50	1.26
880087--880143	25	2.4	23	83	11	78	5	40	1	52	1.34
880101--880222	15	8.3	15	84	10	146	7	45	1	45	1.41
880088--880205	30	4.3	25	77	15	110	6	43	1	48	1.39
880122--880281	15	9.4	16	80	13	112	8	47	1	42	1.44
880196--880264	19	3.3	21	81	15	81	5	50	1	42	1.35
880193--880282	38	2.4	38	85	7	121	7	52	1	38	1.38
880193--880600	21	19.8	21	69	17	196	14	51	0	33	1.46
879998--880264	2	139.0	2	70	12	85	6	47	1	44	1.37
880326--880521	6	35.0	6	66	16	82	14	52	0	32	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880243--880350	15	6.5	15	72	12	54	14	51	0	32	1.49
880305--880637	38	8.0	42	72	16	225	16	52	0	30	1.46
880331--880450	57	2.1	58	87	4	172	14	51	0	34	1.42
880387--880579	66	3.0	67	79	11	199	16	52	0	31	1.44
880326--880578	59	4.2	61	80	9	180	15	52	0	32	1.44
880606--880691	13	6.4	13	69	21	52	16	56	1	25	1.47
880827--881157	20	16.1	20	90	5	475	41	0	47	10	1.38
880794--880824	3	10.3	3	100	0	62	32	0	67	0	0.91
881023--881122	26	4.2	26	79	14	110	37	0	52	11	1.37
881060--881142	3	25.7	3	77	11	58	37	0	54	8	1.31

Tables:   1   2   3