Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold448 Parameters: 2 7 7 80 10 50 500 Length: 1018568

Tables:   1   2   3   

This is table  3  of  3  ( 276 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
881326--881377
3
17.0
3
96
4
95
34
0
65
0
0.93
883699--884043
63
5.6
63
80
4
344
38
12
8
40
1.75
883699--884043
21
16.8
21
84
5
310
38
12
8
40
1.75
886872--886947
38
2.0
38
84
7
100
17
6
50
26
1.70
888880--889331
32
14.1
32
85
1
591
31
18
31
19
1.95
895642--895674
12
2.6
13
90
4
50
0
0
15
84
0.61
895842--895874
12
2.6
13
90
4
50
0
0
15
84
0.61
895564--895963
200
2.0
200
100
0
800
18
21
16
44
1.87
904459--904503
2
22.5
2
100
0
90
0
48
0
51
1.00
908862--908887
11
2.4
11
100
0
52
23
7
15
53
1.67
921705--921774
2
35.0
2
100
0
140
0
50
0
50
1.00
929232--929290
30
2.0
30
100
0
118
30
20
28
20
1.97
941743--941860
16
7.2
16
90
2
92
50
2
23
23
1.62
941785--941872
4
22.0
4
100
0
176
50
0
25
25
1.50
950526--950571
9
5.0
9
82
12
58
0
15
0
84
0.62
950515--950565
21
2.4
21
84
12
61
0
15
3
80
0.86
950530--950569
12
3.4
12
89
3
64
0
15
0
85
0.61
964607--964688
2
41.5
2
97
2
157
48
0
51
0
1.00
966143--966181
20
1.9
20
85
10
53
41
5
7
46
1.55
970841--970913
2
36.5
2
94
0
128
0
46
2
50
1.15
983617--983658
8
5.4
8
82
5
59
0
35
26
38
1.57
983624--983658
12
2.9
12
95
0
61
0
37
25
37
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
991498--991537
2
20.0
2
100
0
80
0
50
0
50
1.00
991924--991987
12
5.4
12
78
9
53
31
12
20
35
1.90
996757--996788
15
2.1
15
94
0
55
34
15
28
21
1.94
1008617--1008959
162
2.1
161
86
0
470
35
18
15
29
1.92
1008966--1009000
4
8.8
4
87
0
52
25
45
25
2
1.67
1008972--1009002
16
1.9
16
100
0
62
25
45
25
3
1.69
1008968--1009006
20
1.9
20
94
0
69
28
43
25
2
1.68
1009316--1009344
11
2.7
11
94
5
51
48
0
20
31
1.50
1010400--1010461
32
1.9
33
96
3
117
29
11
14
45
1.80
1011958--1012005
16
3.0
16
93
0
87
45
25
22
6
1.75
1012989--1013050
31
2.0
31
87
0
88
25
25
22
25
2.00
1013058--1013107
16
3.1
16
91
0
82
6
20
26
48
1.72
1014748--1015080
167
2.0
166
99
0
648
33
19
13
33
1.91
1017961--1018015
27
2.1
26
81
18
62
0
21
30
47
1.51

Tables:   1   2   3   

The End!