oyster.v9_M.fa.s6.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold419
Parameters: 2 7 7 80 10 50 500
Length:  1725835

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536098--1536178	42	1.9	42	90	5	128	37	16	19	27	1.93
1536099--1536183	21	4.0	21	76	4	91	38	16	18	25	1.92
1536257--1536359	21	4.9	21	85	2	127	31	17	14	36	1.90
1536257--1536418	63	2.6	63	87	2	209	32	15	15	36	1.89
1536268--1536427	21	7.6	21	81	0	167	33	16	15	35	1.90
1536454--1536544	21	4.3	21	85	0	119	35	15	17	31	1.91
1536426--1536550	21	6.0	22	76	9	109	34	16	16	32	1.91
1536473--1536567	42	2.3	42	85	3	120	32	13	16	36	1.88
1561437--1561473	19	1.9	19	94	0	65	29	16	18	35	1.93
1562060--1562106	11	4.0	12	78	10	53	8	10	25	55	1.62
1565390--1565434	2	22.5	2	100	0	90	0	51	0	48	1.00
1567784--1568023	34	7.0	34	80	4	268	20	12	24	43	1.85
1567784--1568005	102	2.2	102	90	3	365	19	12	24	43	1.86
1567943--1567998	17	3.3	17	65	9	51	14	8	26	50	1.72
1570557--1570611	2	27.5	2	100	0	110	0	50	0	49	1.00
1571796--1571855	27	2.2	28	82	8	79	25	15	13	46	1.81
1572023--1572068	4	11.8	4	90	4	76	0	45	26	28	1.54
1572018--1572071	12	4.7	12	88	6	76	0	42	25	31	1.55
1574551--1574584	17	2.1	17	94	5	61	29	14	35	20	1.93
1575484--1575547	2	32.0	2	100	0	128	50	0	50	0	1.00
1578600--1578654	2	27.5	2	100	0	110	50	0	49	0	1.00
1579805--1579859	2	27.5	2	100	0	110	50	0	49	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583349--1583402	2	27.0	2	100	0	108	0	50	0	50	1.00
1583750--1583807	2	29.0	2	100	0	116	0	50	0	50	1.00
1586198--1586253	2	28.0	2	100	0	112	0	50	0	50	1.00
1588573--1588615	19	2.3	19	83	0	50	27	6	18	46	1.75
1588995--1589129	30	4.5	30	91	0	209	28	27	20	23	1.99
1593458--1593517	21	2.9	21	89	0	93	26	16	13	43	1.85
1595276--1595313	19	2.0	19	94	0	67	13	15	39	31	1.86
1595342--1595370	14	2.1	14	100	0	58	13	27	10	48	1.75
1597692--1597725	15	2.3	15	100	0	68	47	11	0	41	1.40
1599015--1599069	2	27.5	2	100	0	110	49	0	50	0	1.00
1600788--1600826	17	2.3	17	86	0	51	38	7	2	51	1.44
1635813--1635851	2	19.5	2	100	0	78	0	48	0	51	1.00
1641297--1641322	11	2.4	11	100	0	52	23	26	15	34	1.94
1646247--1646323	2	38.5	2	89	10	122	50	0	46	2	1.15
1647893--1648183	152	1.9	152	94	0	510	38	13	17	31	1.88
1654975--1655041	7	9.6	7	80	0	80	26	23	13	35	1.92
1654975--1655041	21	3.2	21	84	0	89	26	23	13	35	1.92
1659706--1659749	21	2.1	21	100	0	88	27	13	18	40	1.88
1660601--1660653	2	26.5	2	100	0	106	49	0	50	0	1.00
1663178--1663213	2	18.0	2	100	0	72	50	0	50	0	1.00
1663222--1663319	4	24.5	4	97	0	178	47	2	24	25	1.62
1665708--1665742	2	17.5	2	87	0	52	48	0	48	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1668593--1668644	2	26.0	2	96	0	95	48	0	51	0	1.00
1672500--1672566	2	33.5	2	100	0	134	0	49	0	50	1.00
1677117--1677294	57	3.1	57	80	4	216	32	20	22	24	1.98
1686338--1686402	2	32.5	2	100	0	130	0	49	0	50	1.00
1688096--1688149	2	27.0	2	100	0	108	50	0	50	0	1.00
1693188--1693264	2	38.5	2	100	0	154	50	49	0	0	1.00
1712904--1713241	160	2.1	160	88	2	502	36	20	15	27	1.92
1713327--1713994	49	13.6	49	80	3	698	32	12	21	32	1.91
1723964--1724255	55	5.5	55	79	9	318	27	25	24	22	2.00
1724070--1724257	100	1.9	100	89	0	295	28	23	24	23	2.00
1725100--1725181	30	2.7	30	96	0	155	28	26	13	31	1.94

Tables:   1   2   3   4   5

The End!