Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1532
Parameters: 2 7 7 80 10 50 500
Length:  1715538

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 495 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1681067--1681104
12
3.2
12
84
0
58
0
34
26
39
1.57
1681062--1681101
20
2.0
20
95
0
71
0
32
25
42
1.55
1681143--1681956
166
4.9
164
88
4
1104
29
16
15
38
1.90
1681134--1681956
328
2.5
328
87
5
1174
30
16
15
38
1.90
1683485--1683528
4
11.0
4
85
0
52
0
31
22
45
1.53
1683486--1683533
24
2.0
24
91
0
78
0
35
22
41
1.54
1683490--1683532
20
2.1
20
86
0
59
0
34
23
41
1.55
1683559--1684684
166
6.8
166
87
2
1501
28
16
15
39
1.90
1691215--1691285
2
36.5
2
91
5
119
0
49
0
50
1.00
1693852--1693892
16
2.6
16
96
0
73
29
7
21
41
1.80
1706198--1706249
12
4.7
11
82
15
63
1
0
13
84
0.70
1706198--1706248
13
4.2
12
80
11
59
1
0
11
86
0.66
1706213--1706246
17
1.9
18
94
5
61
0
0
11
88
0.52
1707435--1707475
21
1.9
21
90
5
64
34
19
9
36
1.85
1707425--1707476
22
2.4
22
81
12
72
30
19
9
40
1.83

Tables:   1   2   3   4   5

The End!