Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold337 Parameters: 2 7 7 80 10 50 500 Length: 1638316

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 594 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
381898--381965
35
1.9
35
90
0
109
30
10
13
45
1.76
395951--396014
30
2.1
30
100
0
128
39
9
12
39
1.75
398038--398118
15
5.5
15
82
5
112
25
13
49
11
1.75
398033--398118
29
3.0
29
100
0
172
27
13
47
10
1.76
399205--399294
25
3.5
24
75
19
83
53
11
13
22
1.71
400422--400459
2
19.0
2
94
0
67
47
0
52
0
1.00
402064--402108
22
2.0
22
100
0
90
35
31
8
24
1.86
403783--403828
2
23.0
2
100
0
92
0
50
0
50
1.00
404274--404321
24
2.0
24
83
0
60
22
18
18
39
1.92
408766--408833
30
2.3
30
97
0
127
41
23
14
20
1.89
409789--409828
19
2.1
19
90
0
62
37
37
2
22
1.68
410169--410275
29
3.7
29
100
0
214
36
13
6
43
1.69
415273--415367
2
48.0
2
95
2
174
50
0
49
0
1.00
415381--415414
2
17.0
2
100
0
68
50
0
50
0
1.00
419541--419720
66
2.7
67
89
6
294
25
21
27
25
2.00
421093--421346
35
7.3
35
98
0
490
31
33
17
17
1.93
422477--422537
30
2.0
30
93
0
104
24
26
24
24
2.00
423316--423378
2
31.5
2
100
0
126
0
50
0
49
1.00
424964--425145
45
4.0
45
95
0
328
25
22
26
25
2.00
431084--431117
2
17.0
2
93
0
59
2
50
0
47
1.16
431188--431221
2
17.0
2
100
0
68
0
50
0
50
1.00
431082--431515
104
4.3
104
92
4
726
17
38
11
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431292--431323
2
16.0
2
100
0
64
0
50
0
50
1.00
431196--431522
96
3.3
96
93
2
546
17
38
11
32
1.86
431086--431515
102
4.3
102
92
4
728
16
38
11
33
1.85
431490--431515
2
13.0
2
100
0
52
0
50
0
50
1.00
433338--433373
18
2.0
18
100
0
72
38
0
33
27
1.57
433707--434607
335
2.7
332
81
2
955
31
18
19
30
1.96
433707--434661
167
5.7
166
85
2
986
31
19
19
30
1.96
443998--444022
11
2.3
11
100
0
50
28
8
8
56
1.57
445848--445919
4
18.0
4
100
0
144
25
25
0
50
1.50
449499--449851
61
5.8
62
86
3
502
28
16
13
42
1.85
449504--449851
122
2.9
122
95
0
608
28
16
12
42
1.85
450932--450987
4
14.0
4
100
0
112
50
0
25
25
1.50
451916--451965
21
2.4
21
86
0
64
30
12
26
32
1.92
451904--452100
62
3.2
61
75
12
186
27
9
23
40
1.85
452147--452191
20
2.2
21
84
11
58
26
11
24
37
1.89
464005--464054
21
2.4
20
80
9
55
26
18
16
40
1.90
465209--465280
4
18.0
4
100
0
144
25
25
0
50
1.50
465809--466166
179
2.0
179
98
1
684
34
14
10
39
1.81
469021--469066
21
2.2
21
88
7
67
10
36
26
26
1.89
469914--469948
2
17.5
2
93
0
61
54
0
45
0
0.99
474778--474816
11
3.5
11
82
10
53
17
30
10
41
1.83
479156--479206
2
25.5
2
100
0
102
49
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
486971--487077
53
2.0
53
87
7
155
36
15
22
25
1.94
490877--490914
16
2.3
16
86
13
51
23
23
10
42
1.85
498062--498097
2
18.0
2
100
0
72
50
0
50
0
1.00
505351--505382
2
16.0
2
100
0
64
0
50
0
50
1.00
510315--510357
2
21.5
2
100
0
86
48
0
51
0
1.00
512841--512894
2
27.0
2
100
0
108
0
50
0
50
1.00
513459--513515
2
28.5
2
100
0
114
0
49
0
50
1.00
518662--518705
2
22.0
2
100
0
88
50
0
50
0
1.00
522912--522958
2
23.5
2
100
0
94
0
48
0
51
1.00
524016--524055
2
20.0
2
100
0
80
50
0
50
0
1.00
524708--525169
166
2.8
166
89
2
678
30
17
14
38
1.89
526941--526969
2
14.5
2
100
0
58
51
0
48
0
1.00
527029--527064
2
18.0
2
100
0
72
50
0
50
0
1.00
526941--527143
99
2.1
99
98
0
388
43
7
32
17
1.76
527326--527350
2
12.5
2
100
0
50
52
0
48
0
1.00
527643--527682
2
20.0
2
94
0
71
52
0
47
0
1.00
527926--527956
2
16.0
2
93
6
55
48
0
51
0
1.00
527926--527954
15
1.9
15
100
0
58
48
0
51
0
1.00
532287--532382
46
2.1
46
86
0
129
34
20
19
25
1.96
532341--532481
50
2.8
51
71
11
130
33
17
17
31
1.93
532364--532481
50
2.4
50
85
1
175
30
17
17
33
1.94
535440--535485
10
4.6
10
83
0
65
52
28
10
8
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
537221--537697
39
12.3
39
92
1
746
40
20
11
27
1.87
537329--537433
16
5.7
16
66
27
57
40
20
8
29
1.82
537779--538120
172
2.0
172
99
0
675
28
15
21
33
1.94
538224--538285
16
3.0
23
60
30
57
41
17
14
25
1.88
538122--538350
117
1.9
122
88
5
351
39
20
12
27
1.88
538122--538350
39
5.7
39
86
5
305
39
20
12
27
1.88
538922--539232
154
2.0
154
98
0
604
23
23
29
23
1.99
539971--540056
8
10.8
8
85
0
109
1
25
40
32
1.63
539971--540056
24
3.6
24
90
0
136
1
25
40
32
1.63
540070--541038
172
5.6
172
94
0
1697
30
18
15
35
1.92
541097--541244
37
4.0
37
92
0
233
25
10
17
46
1.79
541397--541455
19
3.1
19
90
0
91
23
16
27
32
1.96
541572--541725
36
4.3
36
93
0
272
28
14
16
40
1.88
557425--557514
46
2.0
46
86
0
126
35
14
20
30
1.92
559841--559874
2
17.5
2
93
6
61
47
0
52
0
1.00
561912--561978
26
2.6
26
100
0
134
38
14
4
41
1.67
564408--564917
146
3.5
144
88
1
745
30
21
18
29
1.97
564925--564968
8
5.5
8
88
0
61
36
25
38
0
1.56
564922--564967
12
3.8
12
97
0
83
36
26
36
0
1.57
567181--567228
2
24.0
2
100
0
96
50
0
50
0
1.00
567314--567373
2
30.0
2
100
0
120
50
0
50
0
1.00
567730--567754
13
1.9
13
100
0
50
8
16
36
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572095--572512
162
2.6
157
82
8
465
27
25
14
32
1.95
574445--574483
20
1.9
20
94
0
69
38
25
12
23
1.90
576447--576474
1
28.0
1
100
0
56
0
0
100
0
0.00
576971--577025
2
27.5
2
100
0
110
50
0
49
0
1.00
578918--578963
18
2.6
18
82
0
56
78
19
2
0
0.86
580831--581656
21
39.3
21
92
0
1296
43
26
13
16
1.85
581656--581720
2
32.5
2
100
0
130
50
0
49
0
1.00
582573--582603
4
8.0
4
92
7
55
0
22
25
51
1.48
582601--582662
2
31.0
2
100
0
124
0
50
0
50
1.00
586126--586160
2
17.5
2
100
0
70
48
0
0
51
1.00
596341--596376
11
3.3
11
92
0
63
33
19
11
36
1.87
598525--598807
54
5.2
54
93
0
449
19
23
26
30
1.98
598741--598873
72
1.9
71
90
1
212
23
21
24
30
1.99
598633--598997
179
2.0
179
85
4
486
22
23
24
29
1.99
598683--598932
125
2.0
126
85
5
337
22
22
25
30
1.99
598809--598986
54
3.3
52
76
9
164
22
21
25
30
1.99
598969--599021
18
3.0
17
88
5
79
24
16
26
32
1.97
599970--600222
22
11.9
22
75
10
183
39
18
19
22
1.93
599964--600223
42
6.1
42
91
1
376
39
18
20
21
1.93
601405--601467
21
3.3
21
68
32
68
58
7
9
23
1.56
601409--601469
17
3.5
17
68
16
52
60
8
9
21
1.54
602661--602785
23
5.4
23
95
0
223
45
29
3
21
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616245--616320
4
19.0
4
75
5
73
25
25
1
48
1.59
618055--618098
4
11.0
4
85
9
54
47
22
29
0
1.51
618051--618096
24
1.9
24
95
0
83
47
21
30
0
1.51
619088--619143
15
3.7
15
92
0
94
21
7
62
8
1.48
619087--619143
30
1.9
30
96
0
105
21
7
61
10
1.52
621619--621683
28
2.4
27
80
10
71
16
16
24
41
1.89
621796--621910
28
3.9
27
73
17
86
20
22
19
38
1.94
621923--622272
28
12.6
28
88
3
510
18
20
21
39
1.93
624173--624326
2
80.5
2
71
13
74
54
5
37
2
1.37
624243--624273
15
2.1
15
93
0
53
64
3
32
0
1.09

Tables:   1   2   3   4   5