Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold337 Parameters: 2 7 7 80 10 50 500 Length: 1638316

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 594 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980785--981140
51
6.5
51
73
14
262
41
33
14
10
1.81
980729--980869
63
2.2
65
81
8
155
44
35
12
7
1.70
980836--980957
63
1.9
63
88
0
181
42
32
13
10
1.79
980940--980983
15
2.9
15
82
0
52
38
36
18
6
1.77
980950--981071
63
1.9
63
86
0
172
40
33
14
11
1.82
981054--981493
15
26.9
15
64
21
86
39
35
15
9
1.81
981054--981277
66
3.4
66
87
6
312
39
35
15
8
1.79
981064--981163
15
6.3
15
74
13
92
40
37
17
6
1.74
980722--981442
294
2.5
294
91
2
1134
40
34
14
10
1.80
981160--981247
21
4.2
21
66
5
52
40
35
11
12
1.79
981193--981325
51
2.7
51
84
5
166
39
35
15
9
1.80
981244--981391
63
2.3
63
84
5
181
39
34
16
9
1.81
981307--981518
51
4.2
51
94
0
343
39
33
16
10
1.82
981193--981713
165
3.2
165
81
10
711
39
34
14
11
1.82
981117--981721
330
1.8
330
94
0
1084
39
34
14
10
1.81
981460--981581
63
1.9
63
83
3
156
41
32
14
10
1.81
981193--981721
216
2.4
216
88
4
781
39
34
14
10
1.82
981564--981607
15
2.9
15
82
0
52
38
36
18
6
1.77
981574--981762
66
2.9
64
80
3
220
39
34
13
11
1.81
981604--981695
21
4.4
21
68
5
60
41
34
9
14
1.78
981688--981739
15
3.5
15
89
0
68
40
38
13
7
1.73
981699--981736
15
2.5
15
100
0
76
42
39
18
0
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980551--981762
114
10.6
113
82
9
883
40
34
14
10
1.80
986218--986243
12
2.2
12
100
0
52
30
7
0
61
1.24
988063--988102
11
3.7
11
86
3
55
35
10
30
25
1.88
988288--988392
51
2.1
51
96
0
192
33
13
25
27
1.93
988635--988699
2
33.0
2
93
3
114
0
47
0
52
1.00
988914--989136
112
2.0
112
95
0
401
33
18
18
30
1.95
994798--994836
19
2.2
19
86
9
55
20
20
7
51
1.72
994808--994850
17
2.5
17
80
3
50
25
18
11
44
1.84
998933--998983
21
2.4
21
87
6
77
37
37
11
13
1.82
1002974--1003042
2
34.5
2
100
0
138
0
49
0
50
1.00
1006130--1006192
21
3.1
20
72
14
51
42
31
9
15
1.79
1006165--1006273
51
2.1
51
86
3
148
39
37
11
11
1.78
1009735--1009764
9
3.2
9
90
9
51
46
10
10
33
1.71
1014918--1014950
16
2.1
16
100
0
66
42
12
6
39
1.67
1020383--1020434
4
13.0
4
100
0
104
25
25
0
50
1.50
1021814--1022586
387
2.0
386
99
0
1528
30
17
15
36
1.91
1025844--1025894
2
25.5
2
100
0
102
0
49
0
50
1.00
1025906--1025943
2
19.0
2
94
0
67
47
0
50
2
1.15
1027994--1028026
2
16.5
2
100
0
66
0
48
0
51
1.00
1029954--1030169
32
6.8
32
94
0
360
31
12
15
40
1.84
1030172--1030874
29
24.2
29
87
5
931
24
26
15
33
1.95
1030171--1030863
121
6.0
120
88
4
930
24
26
15
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1030729--1030778
23
2.3
21
81
15
66
22
28
16
34
1.95
1030675--1030874
81
2.4
83
90
7
309
23
26
17
33
1.96
1039627--1039778
34
4.5
34
73
3
108
29
9
25
34
1.88
1039608--1039795
102
1.8
102
88
2
288
28
9
25
37
1.86
1039792--1039865
34
2.2
34
87
0
103
28
5
25
40
1.77
1048238--1048266
2
14.5
2
100
0
58
0
51
0
48
1.00
1048521--1048561
2
20.5
2
100
0
82
0
51
0
48
1.00
1048687--1048711
2
12.5
2
100
0
50
0
48
0
52
1.00
1048815--1048846
2
16.0
2
93
0
55
0
46
0
53
1.00
1049115--1049167
2
26.5
2
94
0
79
0
45
1
52
1.11
1049896--1049929
17
2.0
17
100
0
68
5
41
23
29
1.78
1054041--1054210
42
4.0
42
94
0
304
30
25
20
23
1.98
1056985--1057071
34
2.7
31
77
12
86
74
18
4
2
1.09
1056985--1057071
31
2.6
34
78
10
92
74
18
4
2
1.09
1060094--1060166
4
18.2
4
100
0
146
24
24
0
50
1.49
1061988--1062319
106
3.0
105
80
12
355
34
15
13
36
1.87
1062098--1062307
116
1.8
116
89
5
334
33
15
15
35
1.89
1065652--1065713
20
3.1
20
88
0
88
27
11
24
37
1.89
1068100--1068145
2
23.0
2
100
0
92
0
50
0
50
1.00
1075359--1075427
8
8.6
8
96
0
129
0
36
24
39
1.56
1077678--1077782
2
52.5
2
89
3
158
52
0
44
1
1.18
1079550--1079600
2
25.5
2
100
0
102
0
49
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1085819--1085865
22
2.1
22
88
7
69
21
2
17
59
1.47
1086577--1087233
166
3.9
166
75
10
425
27
22
15
34
1.94
1088701--1088731
16
1.9
16
100
0
62
35
6
19
38
1.77
1092528--1092613
23
3.4
23
77
20
100
27
40
18
12
1.87
1092592--1092709
31
4.1
31
76
16
144
27
38
17
15
1.90
1092623--1092670
23
2.1
23
92
0
78
31
43
16
8
1.78
1092528--1092698
54
3.2
53
94
0
297
28
39
18
14
1.89
1093767--1093879
31
3.9
31
79
19
154
13
18
40
27
1.88
1093805--1093890
23
3.4
23
77
20
100
12
18
40
27
1.87
1093778--1093890
53
2.1
54
98
1
219
13
19
40
26
1.88
1094572--1094598
14
1.9
14
100
0
54
29
0
14
55
1.40
1098890--1098925
11
3.4
10
88
11
54
55
22
19
2
1.56
1101554--1101620
7
9.6
7
83
0
89
35
14
22
26
1.93
1102694--1102760
7
9.6
7
83
0
89
26
22
14
35
1.93
1102694--1102760
21
3.2
21
86
0
98
26
22
14
35
1.93
1107423--1107469
2
23.5
2
95
0
85
53
0
46
0
1.00
1115364--1115641
54
5.1
54
80
5
285
37
22
15
25
1.93
1115364--1115633
18
15.0
18
73
7
190
37
22
15
25
1.93
1115661--1115762
33
3.1
33
83
5
143
20
15
32
31
1.94
1121590--1121644
4
13.8
4
100
0
110
25
23
0
50
1.49
1122802--1123215
27
15.2
26
74
8
272
27
22
16
33
1.95
1122802--1123215
54
7.6
54
84
3
395
27
22
16
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1123948--1123990
22
2.0
23
86
9
63
51
6
6
34
1.56
1131477--1131514
18
2.1
18
100
0
76
21
26
13
39
1.89
1133634--1133684
6
8.5
6
82
0
66
25
35
3
35
1.75
1133634--1133683
18
2.8
18
100
0
100
24
36
4
36
1.74
1137886--1137915
2
15.0
2
100
0
60
50
0
50
0
1.00
1139903--1139933
1
31.0
1
100
0
62
100
0
0
0
0.00
1141756--1141815
4
15.5
4
82
3
70
75
0
3
21
0.95
1142097--1142148
11
4.7
11
75
0
50
36
15
36
11
1.84
1142076--1142194
33
3.6
33
91
0
184
31
20
35
13
1.91
1142098--1142186
22
4.0
22
69
5
63
32
17
35
13
1.89
1154222--1154264
9
4.8
9
88
0
59
23
4
20
51
1.66
1154811--1155237
140
3.0
146
80
7
473
29
15
13
40
1.86
1159251--1159347
21
4.7
21
82
5
117
36
22
12
28
1.91
1159251--1159384
42
3.2
41
79
4
126
36
23
11
27
1.90
1159351--1159384
10
3.4
10
91
0
50
41
26
8
23
1.83
1159351--1159385
15
2.3
15
90
0
52
40
28
8
22
1.84
1159586--1159665
21
3.8
21
77
4
81
40
25
8
26
1.84
1160150--1160175
11
2.4
11
100
0
52
46
26
15
11
1.80
1164091--1164115
12
2.1
12
100
0
50
32
0
20
48
1.50
1168363--1168407
11
3.9
11
86
13
56
8
11
31
48
1.69
1179960--1179998
11
3.5
11
89
0
60
41
10
28
20
1.85
1179959--1180003
22
2.0
22
91
0
72
40
8
28
22
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1182850--1182913
2
32.0
2
100
0
128
50
0
50
0
1.00
1184500--1184558
4
14.8
4
96
0
109
52
0
23
23
1.47
1185595--1185640
2
23.0
2
100
0
92
0
50
0
50
1.00
1187496--1187535
1
40.0
1
89
0
62
95
0
5
0
0.29
1190067--1190119
16
3.2
16
84
5
70
83
13
0
3
0.79
1200544--1200602
2
29.5
2
100
0
118
0
49
0
50
1.00
1206444--1206502
2
29.5
2
100
0
118
0
49
0
50
1.00
1208599--1208724
65
2.0
64
91
1
207
38
12
13
34
1.83
1208603--1208742
65
2.2
65
84
2
165
42
12
12
33
1.79
1214019--1214056
3
12.7
3
100
0
76
0
31
0
68
0.90

Tables:   1   2   3   4   5