Basic Statistics
Measure | Value |
---|---|
Filename | 2112_lane1_TTAGGC_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16000000 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 1702978 | 10.643612500000001 | TruSeq Adapter, Index 3 (100% over 50bp) |
CGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGT | 96297 | 0.60185625 | TruSeq Adapter, Index 3 (100% over 50bp) |
GATTGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 44773 | 0.27983125 | TruSeq Adapter, Index 3 (98% over 50bp) |
GAACGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 34738 | 0.21711249999999999 | TruSeq Adapter, Index 3 (98% over 50bp) |
GAGCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 24832 | 0.1552 | TruSeq Adapter, Index 3 (98% over 50bp) |
CATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 18750 | 0.1171875 | TruSeq Adapter, Index 3 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGAAG | 12640 | 0.0 | 84.788666 | 3 |
GACCGGA | 12330 | 0.0 | 84.42899 | 1 |
ACCGGAA | 13520 | 0.0 | 78.99125 | 2 |
TCCGAAG | 5340 | 0.0 | 70.724785 | 3 |
CGAAGAG | 6265 | 0.0 | 70.65831 | 5 |
GAGCACA | 348135 | 0.0 | 62.328823 | 9 |
GCGGAAG | 4935 | 0.0 | 62.185787 | 3 |
ACGGAAG | 6710 | 0.0 | 61.09899 | 3 |
AGAGCAC | 355860 | 0.0 | 60.97846 | 8 |
CATCGGA | 3770 | 0.0 | 60.115894 | 1 |
CCGAAGA | 7425 | 0.0 | 59.500607 | 4 |
AAGAGCA | 365340 | 0.0 | 59.454666 | 7 |
GAAGAGC | 370655 | 0.0 | 58.62921 | 6 |
GAGCGGA | 5030 | 0.0 | 58.47025 | 1 |
AGCGGAA | 5210 | 0.0 | 58.26698 | 2 |
AATCATA | 137145 | 0.0 | 56.486202 | 5 |
GGAAGAG | 378115 | 0.0 | 56.18295 | 5 |
GATTGGA | 8630 | 0.0 | 55.936485 | 1 |
GAACGGA | 7135 | 0.0 | 55.737026 | 1 |
TTGGAAG | 8755 | 0.0 | 55.18367 | 3 |