Basic Statistics
Measure | Value |
---|---|
Filename | 2112_lane1_TTAGGC_L001_R1_002.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9752634 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 1099779 | 11.276738161198297 | TruSeq Adapter, Index 3 (100% over 50bp) |
GACCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 71988 | 0.7381390504349902 | TruSeq Adapter, Index 3 (98% over 50bp) |
CGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGT | 64352 | 0.6598422538977675 | TruSeq Adapter, Index 3 (100% over 50bp) |
GATTGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 46999 | 0.48191083557529174 | TruSeq Adapter, Index 3 (98% over 50bp) |
GAACGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 30757 | 0.31537121151065445 | TruSeq Adapter, Index 3 (98% over 50bp) |
CATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC | 21579 | 0.22126330179108536 | TruSeq Adapter, Index 3 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGGA | 8890 | 0.0 | 86.83572 | 1 |
CCGGAAG | 9465 | 0.0 | 86.37656 | 3 |
ACCGGAA | 10020 | 0.0 | 81.30861 | 2 |
CATCGGA | 3655 | 0.0 | 70.70634 | 1 |
ACGGAAG | 4935 | 0.0 | 70.462746 | 3 |
GATTGGA | 7795 | 0.0 | 69.35423 | 1 |
ATTGGAA | 7895 | 0.0 | 68.77557 | 2 |
TTGGAAG | 7970 | 0.0 | 68.4257 | 3 |
TGGAAGA | 8760 | 0.0 | 66.91275 | 4 |
GAGCACA | 226195 | 0.0 | 63.276356 | 9 |
GAACGGA | 5355 | 0.0 | 62.276535 | 1 |
AGAGCAC | 230820 | 0.0 | 62.028732 | 8 |
AAGAGCA | 236315 | 0.0 | 60.65472 | 7 |
GCGGAAG | 2735 | 0.0 | 60.444607 | 3 |
GAAGAGC | 240065 | 0.0 | 59.74286 | 6 |
AGCGGAA | 2730 | 0.0 | 59.685883 | 2 |
GAGCGGA | 2550 | 0.0 | 59.615147 | 1 |
AATCATA | 84085 | 0.0 | 57.8688 | 5 |
GGAAGAG | 245220 | 0.0 | 57.444923 | 5 |
CGGAAGA | 242980 | 0.0 | 55.537106 | 4 |