Basic Statistics
Measure | Value |
---|---|
Filename | 20150414_trimmed_2112_lane1_ACAGTG_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11370712 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC | 51174 | 0.4500509730613176 | No Hit |
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA | 26935 | 0.23688050493232085 | No Hit |
GTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT | 15624 | 0.13740564355160872 | No Hit |
GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGG | 14716 | 0.1294202157261568 | No Hit |
TAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA | 11996 | 0.10549911034594844 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 56785 | 0.0 | 58.89312 | 5 |
TCATAAA | 62930 | 0.0 | 54.578503 | 7 |
ATCATAA | 65070 | 0.0 | 53.32266 | 6 |
TAAATCA | 60210 | 0.0 | 51.10657 | 3 |
AAATCAT | 66820 | 0.0 | 49.345707 | 4 |
CATAAAC | 76770 | 0.0 | 44.986053 | 8 |
AATAAAT | 70050 | 0.0 | 43.906788 | 1 |
AGAGCAC | 10895 | 0.0 | 40.796036 | 94-95 |
ATAAACA | 88580 | 0.0 | 39.231567 | 9 |
ATAAATC | 88210 | 0.0 | 34.98211 | 2 |
AACCGGG | 1225 | 0.0 | 30.433353 | 1 |
AAGAGCA | 16595 | 0.0 | 30.058018 | 94-95 |
AGCCCCC | 1625 | 0.0 | 30.04318 | 1 |
ACCGGGC | 1325 | 0.0 | 29.488031 | 2 |
AGCCGCC | 2005 | 0.0 | 29.44041 | 1 |
GAGCACA | 7300 | 0.0 | 28.782797 | 94-95 |
CACGGGC | 1785 | 0.0 | 28.611092 | 3 |
AAACGGG | 63460 | 0.0 | 27.594782 | 14-15 |
GCCCGTA | 1795 | 0.0 | 27.456018 | 2 |
AGCCCGT | 1010 | 0.0 | 27.244377 | 1 |