Basic Statistics
Measure | Value |
---|---|
Filename | 20150414_trimmed_2112_lane1_TGACCA_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2827107 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATACGGC | 1340 | 0.0 | 54.16283 | 5 |
AGAGCAC | 8045 | 0.0 | 46.786175 | 94-95 |
TGATACG | 1640 | 0.0 | 42.21644 | 3 |
TACGGCG | 1765 | 0.0 | 42.073296 | 6 |
GATACGG | 1850 | 0.0 | 38.563084 | 4 |
ATGATAC | 1825 | 0.0 | 38.139053 | 2 |
AATGATA | 1945 | 0.0 | 35.74851 | 1 |
AAGAGCA | 10870 | 0.0 | 34.435627 | 94-95 |
AATCATA | 2395 | 0.0 | 31.331303 | 5 |
GAGCACA | 6195 | 0.0 | 30.770544 | 94-95 |
TCTTACG | 2120 | 0.0 | 29.203526 | 4 |
ACGGCGA | 2390 | 0.0 | 28.691103 | 7 |
GAAGAGC | 13835 | 0.0 | 27.456501 | 94-95 |
TCATAAA | 2880 | 0.0 | 27.088802 | 7 |
GGCGACC | 2270 | 0.0 | 25.537125 | 9 |
AGCCGCC | 1055 | 0.0 | 25.19936 | 1 |
CCCATTT | 2985 | 0.0 | 23.627459 | 5 |
ATCATAA | 3535 | 0.0 | 22.399612 | 6 |
CCGGAAG | 810 | 0.0 | 22.253914 | 3 |
GGAAGAG | 17990 | 0.0 | 21.982054 | 94-95 |