Basic Statistics
Measure | Value |
---|---|
Filename | 20150414_trimmed_2112_lane1_TTAGGC_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13428815 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 131675 | 0.0 | 54.282604 | 5 |
TCATAAA | 141610 | 0.0 | 51.96273 | 7 |
ATCATAA | 143710 | 0.0 | 51.59756 | 6 |
TAAATCA | 130330 | 0.0 | 51.234818 | 3 |
AAATCAT | 142735 | 0.0 | 49.664158 | 4 |
AGAGCAC | 17035 | 0.0 | 48.862804 | 94-95 |
CATAAAC | 151715 | 0.0 | 48.453995 | 8 |
ATAAATC | 144970 | 0.0 | 46.1582 | 2 |
GAGCACA | 9695 | 0.0 | 41.97928 | 94-95 |
AATAAAT | 165340 | 0.0 | 40.354187 | 1 |
AACCGGG | 965 | 0.0 | 40.20665 | 1 |
CACGGGC | 1430 | 0.0 | 39.001186 | 3 |
CACACGG | 1375 | 0.0 | 38.27236 | 1 |
ATAAACA | 194480 | 0.0 | 38.01324 | 9 |
AGCCCGA | 815 | 0.0 | 37.756996 | 1 |
CCGGGCA | 1140 | 0.0 | 36.39837 | 3 |
AGCCCAC | 1420 | 0.0 | 35.80325 | 1 |
AGCCCCC | 1310 | 0.0 | 35.745712 | 1 |
ACCGGGC | 1120 | 0.0 | 35.449303 | 2 |
AGCCGCC | 1160 | 0.0 | 34.216686 | 1 |