Basic Statistics
Measure | Value |
---|---|
Filename | 20150414_trimmed_2112_lane1_TTAGGC_L001_R1_002.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8034025 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 81595 | 0.0 | 55.708027 | 5 |
TCATAAA | 86770 | 0.0 | 52.825 | 7 |
CACGGGC | 875 | 0.0 | 52.673 | 3 |
ATCATAA | 88335 | 0.0 | 52.34521 | 6 |
TAAATCA | 78970 | 0.0 | 51.308014 | 3 |
AAATCAT | 86915 | 0.0 | 50.443287 | 4 |
CATAAAC | 91300 | 0.0 | 50.251392 | 8 |
CACACGG | 925 | 0.0 | 49.79191 | 1 |
AGAGCAC | 10460 | 0.0 | 48.229042 | 94-95 |
ATAAATC | 86840 | 0.0 | 46.27217 | 2 |
ACACGGG | 1010 | 0.0 | 45.62286 | 2 |
GAGCACA | 6000 | 0.0 | 41.722885 | 94-95 |
CCAACGG | 790 | 0.0 | 41.339233 | 2 |
AATAAAT | 98965 | 0.0 | 40.561394 | 1 |
ACCGGGC | 585 | 0.0 | 39.766205 | 2 |
AACCGGG | 665 | 0.0 | 39.67287 | 1 |
ATAAACA | 118370 | 0.0 | 38.981358 | 9 |
ATACGGC | 800 | 0.0 | 38.598904 | 5 |
TACGGCG | 865 | 0.0 | 35.18522 | 6 |
CCGGGCA | 680 | 0.0 | 34.217896 | 3 |