20150521_trimmed_2212_lane2_400ppm_GCCAAT.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	20150521_trimmed_2212_lane2_400ppm_GCCAAT.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	79218039
Sequences flagged as poor quality	0
Sequence length	1-51
%GC	33

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGATC	1945	0.0	13.4264965	45
CTAGATC	1960	0.0	9.602697	45
TAAGATC	2660	0.0	7.871685	45
CTTAGAT	1090	0.0	7.5544157	45
CGACGCT	3085	0.0	7.3112493	3
GACGCTC	3190	0.0	6.9497848	4
CCTAGAT	1320	0.0	6.7728114	45
CAAGATC	7650	0.0	5.904717	45
CGCTCTT	3440	0.0	5.774499	6
ATAGATC	2780	0.0	5.7547097	45
CACGACG	4460	0.0	5.7114754	1
TCAGATC	3435	0.0	5.61625	45
CTAAGAT	1525	1.8189894E-12	5.5538225	45
CTTCCGA	2770	0.0	5.321816	10
ACAGATC	4915	0.0	5.265365	45
ACGCTCT	3905	0.0	5.2435656	5
ACTAGAT	1925	0.0	5.133078	45
GCTCTTC	4160	0.0	5.100573	7