Thu Feb 13 11:55:37 PST 2014 546409A01_ClaireOlson_1_2_3(Cy5/Cy3) ChIP-chip Workflow 2014-02-13 11:55:37 will begin processing shortly. Thu Feb 13 12:10:26 PST 2014 546409A01_ClaireOlson_1_2_3(Cy5/Cy3) ChIP-chip Workflow 2014-02-13 11:55:37 has begun processing. Thu Feb 13 12:10:26 PST 2014 Starting Analysis Data Input Thu Feb 13 12:10:26 PST 2014 Use extraction settings based on slide format Thu Feb 13 12:10:26 PST 2014 Border width setting: 0 Thu Feb 13 12:10:26 PST 2014 Not using local alignment Thu Feb 13 12:10:26 PST 2014 Processing array: 546409A01_ClaireOlson_1_2_3 Thu Feb 13 12:10:26 PST 2014 Beginning extract of XYS File. Thu Feb 13 12:10:26 PST 2014 loading alignment settings Thu Feb 13 12:10:37 PST 2014 generating XYS report Thu Feb 13 12:10:37 PST 2014 generating signal report Thu Feb 13 12:10:46 PST 2014 completed XYS reporting Thu Feb 13 12:10:46 PST 2014 Completed extract of XYS File. Thu Feb 13 12:10:46 PST 2014 Beginning merge data process. Thu Feb 13 12:10:50 PST 2014 Parsed XYS file Thu Feb 13 12:10:54 PST 2014 Parsed POS file Thu Feb 13 12:11:05 PST 2014 Parsed NDF file Thu Feb 13 12:11:05 PST 2014 Writing genome data set Thu Feb 13 12:11:05 PST 2014 Completed merge data process. Thu Feb 13 12:11:05 PST 2014 Saving analysis data for connected operations. Thu Feb 13 12:11:05 PST 2014 Processing output data. Thu Feb 13 12:11:05 PST 2014 Completed Analysis Data Input Thu Feb 13 12:11:05 PST 2014 Starting Analysis Data Input Thu Feb 13 12:11:05 PST 2014 Use extraction settings based on slide format Thu Feb 13 12:11:05 PST 2014 Border width setting: 0 Thu Feb 13 12:11:05 PST 2014 Not using local alignment Thu Feb 13 12:11:05 PST 2014 Processing array: 546409A01_ClaireOlson_1_2_3 Thu Feb 13 12:11:05 PST 2014 Beginning extract of XYS File. Thu Feb 13 12:11:05 PST 2014 loading alignment settings Thu Feb 13 12:11:16 PST 2014 generating XYS report Thu Feb 13 12:11:16 PST 2014 generating signal report Thu Feb 13 12:11:26 PST 2014 completed XYS reporting Thu Feb 13 12:11:26 PST 2014 Completed extract of XYS File. Thu Feb 13 12:11:26 PST 2014 Beginning merge data process. Thu Feb 13 12:11:29 PST 2014 Parsed XYS file Thu Feb 13 12:11:33 PST 2014 Parsed POS file Thu Feb 13 12:11:44 PST 2014 Parsed NDF file Thu Feb 13 12:11:44 PST 2014 Writing genome data set Thu Feb 13 12:11:45 PST 2014 Completed merge data process. Thu Feb 13 12:11:45 PST 2014 Saving analysis data for connected operations. Thu Feb 13 12:11:45 PST 2014 Processing output data. Thu Feb 13 12:11:45 PST 2014 Completed Analysis Data Input Thu Feb 13 12:11:45 PST 2014 Starting calculating ratio. Thu Feb 13 12:11:48 PST 2014 Completed calculating ratio. Thu Feb 13 12:11:48 PST 2014 Starting Biweight Mean Centering. Thu Feb 13 12:11:48 PST 2014 Biweight mean value: -0.8872 Thu Feb 13 12:11:49 PST 2014 Completed Biweight Mean Centering. Thu Feb 13 12:11:49 PST 2014 Starting Merge Data operation. Thu Feb 13 12:11:49 PST 2014 Starting averaging replicate data. Thu Feb 13 12:11:49 PST 2014 Completed averaging replicate data. Thu Feb 13 12:11:49 PST 2014 Merge Data operation complete. Thu Feb 13 12:11:49 PST 2014 Starting GFF Report. Thu Feb 13 12:12:10 PST 2014 Completed GFF Report. Thu Feb 13 12:12:10 PST 2014 Starting Peak Identification Thu Feb 13 12:14:48 PST 2014 Peak Identification complete Thu Feb 13 12:14:48 PST 2014 Saving analysis data for Merge Data. Thu Feb 13 12:14:51 PST 2014 Done saving analysis data for Merge Data. Thu Feb 13 12:14:51 PST 2014 Starting GFF Report. Thu Feb 13 12:14:51 PST 2014 Completed GFF Report. Thu Feb 13 12:14:51 PST 2014 Saving analysis data for Peak Identification. Thu Feb 13 12:14:52 PST 2014 Done saving analysis data for Peak Identification. Thu Feb 13 12:14:52 PST 2014 546409A01_ClaireOlson_1_2_3(Cy5/Cy3) ChIP-chip Workflow 2014-02-13 11:55:37 has completed processing in 4 minutes 26 seconds [00:04:26.460].