2013-08-07 10:16:35,DEBUG,com.nimblegen.common.config.impl.ApplicationLogConfiguration, Application logging has been successfully configured
2013-08-07 10:16:35,DEBUG,com.nimblegen.deva.projectmanager.settings.Settings, Settings successfully saved to Java properties.
2013-08-07 10:16:35,DEBUG,com.nimblegen.deva.projectmanager.ui.ProjectManagerMainPanel, Running DbMigrate and then DEVA on directory: 'Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA'
2013-08-07 10:16:35,DEBUG,com.nimblegen.deva.projectmanager.settings.MemoryProbe, Java Command Line: C:\Deva\jre\bin\java
2013-08-07 10:16:35,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe, MemoryProbe has found the total physical memory to be 8189 megabytes.
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe, In 11 trials, MemoryProbe has found the "borderline" memory setting to be 7157 megabytes.
2013-08-07 10:16:37,DEBUG,com.nimblegen.deva.projectmanager.settings.MemoryProbe, Finished determineBorderlineMemorySettingInMegabytes()
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe, MemoryProbe has set the highest recommended memory setting to 7150 megabytes.
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, CombinedLauncher starting.
2013-08-07 10:16:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, CombinedLauncher is in Jar mode.
2013-08-07 10:16:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Command: java -Duser.language=en -Duser.region=US -cp C:\Deva\DEVA.jar com.nimblegen.deva.dbmigrate.RunDBMigrate -D -v=h
2013-08-07 10:16:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Project directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA
2013-08-07 10:16:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Working directory: C:\Deva
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, StreamWorker 514120355 starting.
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, Error StreamLogger 1385729494 starting.
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/C:/Deva/DEVA.jar!/logback.xml]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,812 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@43462851 - URL [jar:file:/C:/Deva/DEVA.jar!/logback.xml] is not of type file
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,933 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,935 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,969 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen level set to DEBUG
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,969 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen.common.jobcontroller level set to ERROR
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,969 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - ROOT level set to ERROR
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,969 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT]
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:16:37,970 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
2013-08-07 10:16:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:16:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5Command line arguments retrieved.
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@78e61fd1: startup date [Wed Aug 07 10:16:38 PDT 2013]; root of context hierarchy
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/deva/dbmigrate/DataSourceFactory_h2.xml]
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@e5d391d: defining beans [db_connection_driver_class_name,db_connection_protocol,db_vendor,database_name,db_directory,db_user_default_name,db_user_default_password,sql_create_role,sql_set_schema,sql_create_schema,sql_drop_role,sql_create_version,sql_insert_version]; root of factory hierarchy
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 649 [main] INFO com.nimblegen.deva.dbmigrate.DataSourceFactory - Using: org.h2.Driver
2013-08-07 10:16:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 15MigrationFramework initialized.
2013-08-07 10:16:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 765 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Starting H2 in EMBEDDED mode.
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@2d1e233: startup date [Wed Aug 07 10:16:38 PDT 2013]; root of context hierarchy
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services_h2_embedded.xml]
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services.xml]
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/daos.xml]
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:38 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:16:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from URL [file:Z:/users/c/csather/TO_BE_REVIEWED_SCANS/08072013/OysterArray/DEVA/config/sys_config/db/h2-embedded-datasource.xml]
2013-08-07 10:16:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:39 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-07 10:16:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@5adf48c4: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,fileTokenFactory,fileTokenDao,organismFactory,organismDao,genomeSourceFactory,genomeSourceDao,genomeAssyFactory,genomeAssyDao,sampleFactory,sampleDao,arrayDesignFactory,arrayDesignDao,arrayResultFactory,arrayResultDao,sampleTrackingControlSetFactory,sampleTrackingControlSetDao,labeledSampleFactory,labeledSampleDao,slideDesignFactory,slideDesignDao,slideResultFactory,slideResultDao,arrayTiffFactory,arrayTiffDao,decodedNumberFactory,decodedNumberDao,analysisWorkflowFactory,analysisWorkflowDao,workflowDataFactory,workflowDataDao,monitoredFileFactory,monitoredFileDao,importedFileAssociationsDao,genomeAssemblySequenceFactory,genomeAssemblySequenceDao,settingFactory,settingDao,workflowTemplateFactory,workflowTemplateDao,visualizationFactory,visualizationDao,genomeDatasetDboFactory,genomeDatasetDao,valuedGenomeDatasetAttributesDao,genomeDatasetCacheDboFactory,genomeDatasetCacheDao,exportFactory,exportDao,containerGenomeDatasetDao,segmntStatsFactory,segmntStatsDao,designAnnotationFactory,designAnnotationDao,jobsRecoveryDao,activityStatusDao,qualityControlReportFactory,qualityControlReportDao,genomeDatasetPioService,slideService,analysisWorkflowService,workflowTransportService,workflowTemplateService,visualizationService,qualityControlReportService,snpHeterozygosityFrequencyService,genomeDatasetCacheService,fileMoverFactory,fileService,filePioService,genomeAssyService,genomeAssyPioService,applicationConfiguration,systemConfiguration,designAnnotationService,devaArchiveImportService,genomeAssemblySequenceService,sequenceStatsService,systemConfigurationService,dataWriterFactory,xysExporter,gffDataExporter,jobsRecoveryService,trackSettingsService,paneSettingsService,plotSettingsService,genomeAssemblyController,tiffImportMonitor,manualAlignmentController,tiffImportController,slidesTableController,genomeDatasetController,slideResultSearchController,arrayResultSearchController,exportService,jobStatusDetailController,propertyConfigurer,h2datasource,datasource,dialect,template]; root of factory hierarchy
2013-08-07 10:16:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:39 AM java.util.prefs.WindowsPreferences
2013-08-07 10:16:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2401 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:253ms)
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2791 [main] DEBUG com.nimblegen.deva.common.jobservice.JobService - job service resource limit for ESTIMATED_MEMORY_IN_KB is set to 1524932.
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2868 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - deleting all files in store directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore].
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - 0 files and 0 directories successfully deleted in store directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore].
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17Store folder deleted.
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFrameworkFacade - deleting all files in database directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\datastore].
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2890 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFrameworkFacade - 0 files and 0 directories successfully deleted in database directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\datastore].
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17Database deleted.
2013-08-07 10:16:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:16:40 AM org.springframework.jdbc.datasource.DriverManagerDataSource setDriverClassName
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2890 [main] DEBUG com.nimblegen.deva.dbmigrate.DataSourceFactory - jdbc:h2:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\datastore\rng_database
2013-08-07 10:16:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loaded JDBC driver: org.h2.Driver
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3200 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - Executing CREATE TABLE version_info ( id BIGINT AUTO_INCREMENT PRIMARY KEY, version INT NOT NULL, updated TIMESTAMP DEFAULT CURRENT TIMESTAMP );
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3210 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - Initialization is complete.
2013-08-07 10:16:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 50Framework initialized
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3752 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - Fired up a database Migrator.
2013-08-07 10:16:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3753 [main] INFO com.nimblegen.deva.dbmigrate.RunDBMigrate - Current database version: 0
2013-08-07 10:16:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3753 [main] INFO com.nimblegen.deva.dbmigrate.RunDBMigrate - Destination version: 10000
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4033 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFactory - Found and created 39 new Migrations.
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 51Stage 1 of 39 done
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4039 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE filetoken ( id_filetoken BIGINT AUTO_INCREMENT PRIMARY KEY, path_relative_to_store_directory VARCHAR(512) NULL , file_name VARCHAR(128) NOT NULL UNIQUE , original_file_name VARCHAR(256) NOT NULL , num_references INTEGER NOT NULL , md5_value VARCHAR(128) UNIQUE NOT NULL , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4046 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1)
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 52Stage 2 of 39 done
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4049 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE organism ( id_organism BIGINT AUTO_INCREMENT PRIMARY KEY, ncbi_taxon_id INT NOT NULL , scientific_name VARCHAR(128) NOT NULL , common_name VARCHAR(128) , is_user_defined INT NOT NULL DEFAULT 0 , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4051 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_source ( id_genome_source BIGINT AUTO_INCREMENT PRIMARY KEY, name VARCHAR(64) NOT NULL , description VARCHAR(512), created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4062 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_assembly ( id_genome_assembly BIGINT AUTO_INCREMENT PRIMARY KEY, genome_assembly_name VARCHAR(32) , accession_identifier VARCHAR(132) , is_user_defined INT NOT NULL DEFAULT 0 , id_organism BIGINT NOT NULL , id_genome_source BIGINT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_gnmssy_rgn FOREIGN KEY (id_organism) REFERENCES organism (id_organism) , CONSTRAINT fk_gnmssy_gnmsrc FOREIGN KEY (id_genome_source) REFERENCES genome_source (id_genome_source) , CONSTRAINT unq_gnmssy_lbl UNIQUE (genome_assembly_name) )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4078 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (2)
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 53Stage 3 of 39 done
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4081 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO organism ( ncbi_taxon_id , scientific_name , common_name ) VALUES ( 32644 , 'Unspecified' , 'Unspecified' ), ( 3702 , 'Arabidopsis thaliana' , 'Thale-cress'), ( 9913 , 'Bos taurus' , 'Domestic cow' ), ( 6239 , 'Caenorhabditis elegans' , 'Nematode' ), ( 7955 , 'Danio rerio' , 'Zebrafish' ), ( 7227 , 'Drosophila melanogaster' , 'Fruit fly' ), ( 9606 , 'Homo sapiens' , 'Human' ), ( 10090 , 'Mus musculus' , 'House mouse' ), ( 10116 , 'Rattus norvegicus' , 'Norway rat' ), ( 4932 , 'Saccharomyces cerevisiae' , 'Yeast' ), ( 9685 , 'Xenopus tropicalis' , 'Frog' ) , ( 9615 , 'Canis familiaris' , 'Dog' ), ( 9823 , 'Sus scrofa' , 'Pig' ), ( 9031 , 'Gallus gallus' , 'Chicken' ), ( 9796 , 'Equus caballus' , 'Horse' )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4082 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO genome_source ( name , description ) VALUES ( 'UCSC' , 'Genome Bioinformatics at the University of California at Santa Clara. Provides assembly releases of popular genomes.' ), ( 'GenBank' , 'GenBank is a resource for genomic information at the National Center for Bioinformatics (NIH).'), ( 'Flybase' , 'A project supported by a consortium of Drosophila researchers and computer scientists at Harvard University, the University of Cambridge (UK), and Indiana University.'), ( 'TAIR' , 'The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.' ), ( 'Unknown' , 'Unknown' ), ( 'Customer' , 'Customer supplied' )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4097 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO genome_assembly ( genome_assembly_name , id_organism , id_genome_source ) VALUES ( 'Unspecified' , 1 , 5 ) , ( 'TAIR9' , 2 , 4 ) , ( 'bosTau4' , 3 , 1 ) , ( 'ce6' , 4 , 1 ), ( 'ce4' , 4 , 1 ) , ( 'danRer6' , 5 , 1 ) , ( 'dm3' , 6 , 1 ) , ( 'hg19' , 7 , 1 ) , ( 'hg18' , 7 , 1 ) , ( 'hg17' , 7 , 1 ) , ( 'mm9' , 8 , 1 ) , ( 'mm8' , 8 , 1 ) , ( 'mm7' , 8 , 1 ) , ( 'rn4' , 9 , 1 ) , ( 'sacCer2' , 10 , 1 ) , ( 'xenTro2' , 11 , 1 ) , ( 'canFam2' , 12 , 1 ) , ( 'susScr2' , 13 , 1 ) , ( 'galGal3' , 14 , 1 ) , ( 'equCab2' , 15 , 1 )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4102 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_assembly AS SELECT ga.id_genome_assembly , genome_assembly_name , accession_identifier , ga.is_user_defined AS genome_assembly_is_user_defined , ga.created_at AS genome_assembly_created_at , gs.id_genome_source , gs.name AS genome_source_name , gs.description AS genome_source_description , org.id_organism , org.is_user_defined AS organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_assembly AS ga , genome_source AS gs , organism AS org WHERE ga.id_organism = org.id_organism AND ga.id_genome_source = gs.id_genome_source
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4104 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (3)
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 54Stage 4 of 39 done
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4107 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset ( id_genome_dataset BIGINT AUTO_INCREMENT PRIMARY KEY , original_file_name VARCHAR(128) , data_type VARCHAR(128) NOT NULL , id_genome_assembly BIGINT REFERENCES genome_assembly , is_import SMALLINT NOT NULL DEFAULT 0 , is_annotation SMALLINT NOT NULL DEFAULT 0 , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4110 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset_container ( id_genome_dataset_container BIGINT AUTO_INCREMENT PRIMARY KEY , id_genome_dataset_parent BIGINT REFERENCES genome_dataset , container_name VARCHAR (128) , id_genome_dataset BIGINT REFERENCES genome_dataset )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4113 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE chromosome_data_file ( id_chromosome_data_file BIGINT AUTO_INCREMENT PRIMARY KEY , id_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , id_attributes_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , id_position_key_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , chromosome_name VARCHAR(64) NOT NULL , num_records BIGINT NOT NULL , min_value FLOAT , first_quartile FLOAT , median FLOAT , third_quartile FLOAT , max_value FLOAT , min_position BIGINT NOT NULL , max_position BIGINT NOT NULL , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4157 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE chromosome_dataset ( id_chromosome_dataset BIGINT NOT NULL AUTO_INCREMENT PRIMARY KEY , id_genome_dataset BIGINT NOT NULL REFERENCES genome_dataset (id_genome_dataset) ON DELETE CASCADE , id_chromosome_data_file BIGINT NOT NULL UNIQUE REFERENCES chromosome_data_file (id_chromosome_data_file) , id_filetoken_lucene_anchor BIGINT REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4180 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_gds_ga AS SELECT id_genome_dataset , original_file_name AS gds_original_filename , data_type AS gds_data_type , is_import AS gds_is_import , stored_at AS gds_stored_at , is_annotation AS gds_is_annotation , vw_genome_assembly.id_genome_assembly , genome_assembly_name , accession_identifier , genome_assembly_is_user_defined , genome_assembly_created_at , id_genome_source , genome_source_description , genome_source_name , id_organism , organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_dataset INNER JOIN vw_genome_assembly ON genome_dataset.id_genome_assembly = vw_genome_assembly.id_genome_assembly
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4182 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_chromosome_dataset AS SELECT cds.id_chromosome_dataset , cds.id_genome_dataset , cds.id_chromosome_data_file , cds.id_filetoken_lucene_anchor , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id , data_file.id_chromosome_data_file AS data_file_id , data_file.chromosome_name , data_file.num_records AS data_file_num_records , data_file.min_value , data_file.first_quartile , data_file.median , data_file.third_quartile , data_file.max_value , data_file.min_position , data_file.max_position , data_file.num_records , data_file.id_filetoken AS data_filetoken_id , data_file.id_attributes_filetoken AS attributes_filetoken_id , data_file.id_position_key_filetoken AS position_key_filetoken_id FROM chromosome_dataset AS cds , chromosome_data_file AS data_file WHERE cds.id_chromosome_data_file = data_file.id_chromosome_data_file
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4194 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_dataset AS SELECT gds.id_genome_dataset , gds.gds_original_filename , gds.gds_data_type , gds.gds_is_import , gds.gds_is_annotation , gds.gds_stored_at , gds.id_genome_assembly , gds.genome_assembly_name , gds.accession_identifier , gds.genome_assembly_created_at , gds.genome_assembly_is_user_defined , gds.id_genome_source , gds.genome_source_description , gds.genome_source_name , gds.id_organism , gds.scientific_name , gds.common_name , gds.ncbi_taxon_id , gds.organism_is_user_defined , cds.id_chromosome_dataset , data_file.chromosome_name , data_file.id_chromosome_data_file AS data_file_id , data_file.id_filetoken AS data_filetoken_id , data_file.id_attributes_filetoken AS attributes_filetoken_id , data_file.id_position_key_filetoken AS position_key_filetoken_id , data_file.min_value , data_file.first_quartile , data_file.median , data_file.third_quartile , data_file.max_value , data_file.min_position , data_file.max_position , data_file.num_records , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id FROM vw_gds_ga as gds LEFT OUTER JOIN chromosome_dataset AS cds ON gds.id_genome_dataset = cds.id_genome_dataset LEFT OUTER JOIN chromosome_data_file AS data_file ON cds.id_chromosome_data_file = data_file.id_chromosome_data_file
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4195 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE valued_genome_dataset_attributes ( id_valued_genome_dataset_attributes BIGINT AUTO_INCREMENT PRIMARY KEY , attribute_name VARCHAR(128) NOT NULL , id_genome_dataset BIGINT NOT NULL)
2013-08-07 10:16:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4196 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (4)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 55Stage 5 of 39 done
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4197 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE monitored_file ( id_monitored_file BIGINT AUTO_INCREMENT PRIMARY KEY , created TIMESTAMP NOT NULL , found_at TIMESTAMP NOT NULL , file_path VARCHAR(512) NOT NULL , file_name VARCHAR(128) NOT NULL , file_size BIGINT NOT NULL)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4201 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE imported_file_associations ( id_imported_file_associations BIGINT AUTO_INCREMENT PRIMARY KEY , md5_value VARCHAR(128) NOT NULL , id_genome_dataset BIGINT REFERENCES genome_dataset )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4203 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (5)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 56Stage 6 of 39 done
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4204 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE workflow_visualization ( id_workflow_visualization BIGINT AUTO_INCREMENT PRIMARY KEY , visualization_name VARCHAR(100) UNIQUE , visualization_xml CLOB NOT NULL )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4258 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE workflow_template ( id_workflow_template BIGINT AUTO_INCREMENT PRIMARY KEY, experiment_type VARCHAR(64) NOT NULL, workflow_name VARCHAR(512) NOT NULL UNIQUE, workflow_xml CLOB NOT NULL, id_workflow_visualization BIGINT , status_type VARCHAR(64) NOT NULL , active_type VARCHAR(64) NOT NULL , CONSTRAINT fk_workflow_visualization FOREIGN KEY (id_workflow_visualization) REFERENCES workflow_visualization (id_workflow_visualization) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4278 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE rng_workflow ( id_workflow BIGINT AUTO_INCREMENT PRIMARY KEY, name VARCHAR(512) , description VARCHAR(256) , workflow CLOB , id_workflow_template BIGINT , dye_mapping VARCHAR(128) , is_complete SMALLINT NOT NULL , experiment_type VARCHAR(64) NOT NULL , array_name VARCHAR(256) , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_workflow_template FOREIGN KEY (id_workflow_template) REFERENCES workflow_template (id_workflow_template) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4281 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE slide_design ( id_slide_design BIGINT AUTO_INCREMENT PRIMARY KEY , marketing_format_name VARCHAR(128) , slide_barcode VARCHAR(128) NOT NULL , id_filetoken_ncd BIGINT , is_local_alignment_used SMALLINT NOT NULL , is_old SMALLINT NOT NULL DEFAULT 0 , alignment_border_in_pixels SMALLINT NOT NULL , is_bursting_performed SMALLINT NOT NULL , feature_size_in_microns FLOAT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_filetoken_ncd FOREIGN KEY (id_filetoken_ncd) REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4287 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_design ( id_array_design BIGINT AUTO_INCREMENT PRIMARY KEY, well_name VARCHAR(128) NOT NULL , experiment_type VARCHAR(64) NOT NULL , id_filetoken_ndf BIGINT , id_filetoken_pos BIGINT , id_slide_design BIGINT NOT NULL , id_genome_assembly BIGINT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_design FOREIGN KEY (id_slide_design) REFERENCES slide_design (id_slide_design) , CONSTRAINT fk_genome_assembly FOREIGN KEY (id_genome_assembly) REFERENCES genome_assembly (id_genome_assembly) , CONSTRAINT fk_filetoken_ndf FOREIGN KEY (id_filetoken_ndf) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_pos FOREIGN KEY (id_filetoken_pos) REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4302 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE slide_result ( id_slide_result BIGINT AUTO_INCREMENT PRIMARY KEY, slide_result_name VARCHAR(128), slide_scan_tag VARCHAR(128) , slide_result_description VARCHAR(128), id_filetoken_cy3tiff BIGINT , id_filetoken_cy5tiff BIGINT , id_filetoken_twochanneltiff BIGINT , id_slide_design BIGINT NOT NULL , scanned_date_cy3tiff TIMESTAMP , scanned_date_cy5tiff TIMESTAMP , scanned_date_twochanneltiff TIMESTAMP , cy3_slide_status VARCHAR(24) , cy5_slide_status VARCHAR(24) , serialized_slide_result BLOB NOT NULL, created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_design1 FOREIGN KEY (id_slide_design) REFERENCES slide_design (id_slide_design) , CONSTRAINT fk_filetoken_cy3tiff1 FOREIGN KEY (id_filetoken_cy3tiff) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_cy5tiff1 FOREIGN KEY (id_filetoken_cy5tiff) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_twochanneltiff1 FOREIGN KEY (id_filetoken_twochanneltiff) REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4307 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_result ( id_array_result BIGINT AUTO_INCREMENT PRIMARY KEY, array_result_name VARCHAR(128), array_result_description VARCHAR(128), dye_mapping VARCHAR(128) NOT NULL, is_analysis_disabled SMALLINT NOT NULL DEFAULT 0 , id_slide_result BIGINT NOT NULL , id_array_design BIGINT NOT NULL , id_default_workflow BIGINT , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_result FOREIGN KEY (id_slide_result) REFERENCES slide_result (id_slide_result) , CONSTRAINT fk_array_design FOREIGN KEY (id_array_design) REFERENCES array_design (id_array_design) , CONSTRAINT fk_rng_workflow FOREIGN KEY (id_default_workflow) REFERENCES rng_workflow (id_workflow) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4313 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_tiff ( id_array_tiff BIGINT AUTO_INCREMENT PRIMARY KEY , id_array_tiff_filetoken BIGINT , id_thumbnail_filetoken BIGINT REFERENCES filetoken , id_thumbnail_upper_left_filetoken BIGINT , id_thumbnail_upper_right_filetoken BIGINT , id_thumbnail_lower_left_filetoken BIGINT , id_thumbnail_lower_right_filetoken BIGINT , id_alignment_filetoken BIGINT , precision_score FLOAT , alignment_status VARCHAR(64) , CONSTRAINT fk_at_af FOREIGN KEY (id_alignment_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft FOREIGN KEY (id_array_tiff_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ul FOREIGN KEY (id_thumbnail_upper_left_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ur FOREIGN KEY (id_thumbnail_upper_right_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ll FOREIGN KEY (id_thumbnail_lower_left_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_lr FOREIGN KEY (id_thumbnail_lower_right_filetoken) REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4319 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE labeled_sample ( id_labeled_sample BIGINT AUTO_INCREMENT PRIMARY KEY, dye VARCHAR(16) , CHECK(dye in ('Cy3','Cy5')), sample_id VARCHAR(128) NOT NULL, description VARCHAR(128) NOT NULL, dna_amount VARCHAR(64) NOT NULL, tissue VARCHAR(64) NOT NULL, bursting_failure VARCHAR(64) NOT NULL, alignment_failure VARCHAR(64) NOT NULL, extraction_failure VARCHAR(64) NOT NULL, storing_failure VARCHAR(64) NOT NULL, id_organism BIGINT REFERENCES organism , id_filetoken_xys BIGINT , id_array_result BIGINT NOT NULL , id_array_tiff BIGINT , id_genome_dataset BIGINT REFERENCES genome_dataset , is_manually_aligned SMALLINT DEFAULT 0 , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_filetoken_xys FOREIGN KEY (id_filetoken_xys) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_array_result FOREIGN KEY (id_array_result) REFERENCES array_result (id_array_result) , CONSTRAINT fk_array_tiff FOREIGN KEY (id_array_tiff) REFERENCES array_tiff (id_array_tiff) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4322 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE rng_workflow_data ( id_workflow_data BIGINT AUTO_INCREMENT PRIMARY KEY, id_workflow BIGINT , original_output_dockbinding CLOB NOT NULL , next_input_dockbinding CLOB NOT NULL , datatype VARCHAR(128) NOT NULL , id_genome_dataset BIGINT REFERENCES genome_dataset , id_labeled_sample BIGINT REFERENCES labeled_sample , id_array_tiff_during_analysis BIGINT REFERENCES array_tiff , CONSTRAINT fk_workflow FOREIGN KEY (id_workflow) REFERENCES rng_workflow (id_workflow) )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4323 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE setting ( id_setting BIGINT AUTO_INCREMENT PRIMARY KEY, setting_type VARCHAR(64) NOT NULL, setting_name VARCHAR(128) NOT NULL, setting_value CLOB NOT NULL)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4324 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (6)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 57Stage 7 of 39 done
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4325 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE file_export ( id_file_export BIGINT AUTO_INCREMENT PRIMARY KEY , filename VARCHAR(128) NOT NULL , filesize_in_kb BIGINT NOT NULL , absolute_path VARCHAR(512) NOT NULL , created_at TIMESTAMP NOT NULL )
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 4326 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (7)
2013-08-07 10:16:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 58Stage 8 of 39 done
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5671 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (8)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 59Stage 9 of 39 done
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5674 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_assembly_sequence ( id_genome_assembly_sequence BIGINT AUTO_INCREMENT PRIMARY KEY , id_filetoken_fasta BIGINT NOT NULL, chromosome VARCHAR(512) NOT NULL , id_genome_assembly BIGINT NOT NULL , CONSTRAINT fk_filetoken_genome_assembly_sequence FOREIGN KEY (id_filetoken_fasta) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_genome_assembly_genome_assembly_sequence FOREIGN KEY (id_genome_assembly) REFERENCES genome_assembly (id_genome_assembly) )
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5675 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (9)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 60Stage 10 of 39 done
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5678 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE segmntstats ( id_segmntstats BIGINT AUTO_INCREMENT PRIMARY KEY, id_array_result BIGINT NOT NULL , id_workflow BIGINT NOT NULL , xshift DOUBLE NOT NULL , mad1dr DOUBLE NOT NULL , CONSTRAINT fk_workflow_segmntstats FOREIGN KEY (id_workflow) REFERENCES rng_workflow (id_workflow) , CONSTRAINT fk_array_result_segmentstats FOREIGN KEY (id_array_result) REFERENCES array_result (id_array_result) )
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5679 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (10)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 61Stage 11 of 39 done
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5681 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset_for_design ( id_genome_dataset_for_design BIGINT AUTO_INCREMENT PRIMARY KEY , id_slide_design BIGINT NOT NULL REFERENCES slide_design( id_slide_design ) , id_genome_dataset BIGINT NOT NULL REFERENCES genome_dataset( id_genome_dataset ) )
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5682 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (11)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 62Stage 12 of 39 done
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5683 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE submitted_jobs ( job_id BIGINT NOT NULL PRIMARY KEY, serialized_job_file_token_id BIGINT NOT NULL)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 5684 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (12)
2013-08-07 10:16:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 63Stage 13 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6473 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD REQUIRED_INPUT_TYPE VARCHAR(64) NOT NULL default 'TEST_AND_REFERENCE'
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6474 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (13)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 64Stage 14 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6475 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE stc (id_stc BIGINT AUTO_INCREMENT PRIMARY KEY, id_stc_set BIGINT NOT NULL, stc BIGINT NOT NULL)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6592 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_result ADD expected_id_stc_set BIGINT
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6642 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_result ADD actual_id_stc_set BIGINT
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6646 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_stc AS SELECT DISTINCT id_stc_set,(SELECT GROUP_CONCAT(stc SEPARATOR ',') FROM stc WHERE id_stc_set=top.id_stc_set) AS stcs FROM stc AS top UNION SELECT DISTINCT expected_id_stc_set, '' AS stcs FROM array_result WHERE expected_id_stc_set NOT IN (SELECT DISTINCT ID_STC_SET FROM STC) UNION SELECT DISTINCT actual_id_stc_set, '' AS stcs FROM array_result WHERE actual_id_stc_set NOT IN (SELECT DISTINCT ID_STC_SET FROM STC) ORDER BY id_stc_set
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6647 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (14)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 65Stage 15 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6648 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (16)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 66Stage 16 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6651 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE decoded_number ( id_decoded_number BIGINT AUTO_INCREMENT PRIMARY KEY , id_array_tiff BIGINT NOT NULL , series_name VARCHAR(50) NOT NULL , name VARCHAR(50) NOT NULL , value VARCHAR(50) NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_array_tiff_decoded_num FOREIGN KEY (id_array_tiff) REFERENCES array_tiff (id_array_tiff) , CONSTRAINT unq_id_array_tiff_name UNIQUE (id_array_tiff,name) )
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6652 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (17)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 67Stage 17 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6711 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_tiff ADD COLUMN alignment_outcome VARCHAR(50)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6714 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: UPDATE array_tiff SET alignment_outcome = 'NONE'
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6716 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table array_tiff ALTER COLUMN alignment_outcome SET NOT NULL
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6718 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (18)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 68Stage 18 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6719 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE quality_control_metrics ( id_quality_control BIGINT AUTO_INCREMENT PRIMARY KEY , id_labeled_sample BIGINT NOT NULL , slope DOUBLE , inter_quartile_density DOUBLE , noise DOUBLE , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6720 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (19)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 69Stage 19 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6722 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE activity_status ( id_activity_status BIGINT AUTO_INCREMENT PRIMARY KEY , activity_status_detail_filetoken BIGINT , description VARCHAR(512) , job_type VARCHAR(128) , status VARCHAR(128) , percent_complete DOUBLE , date_submitted TIMESTAMP , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_activity_status_detail_filetoken FOREIGN KEY (activity_status_detail_filetoken) REFERENCES filetoken (id_filetoken) )
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6723 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (21)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 70Stage 20 of 39 done
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6808 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_cy3tiff_checksum BIGINT
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6917 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_cy5tiff_checksum BIGINT
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 6999 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_twochanneltiff_checksum BIGINT
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 7000 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table slide_result add CONSTRAINT fk_filetoken_cy3tiff_chksum1 FOREIGN KEY (id_filetoken_cy3tiff_checksum) REFERENCES filetoken (id_filetoken)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 7001 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD CONSTRAINT fk_filetoken_cy5tiff_chksum1 FOREIGN KEY ( id_filetoken_cy3tiff_checksum ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 7002 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD CONSTRAINT fk_filetoken_twochanneltiff_chksum1 FOREIGN KEY ( id_filetoken_twochanneltiff_checksum ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 7004 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (22)
2013-08-07 10:16:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 71Stage 21 of 39 done
2013-08-07 10:16:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 8194 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN WORKFLOW_IDENTIFIER VARCHAR(512)
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 8732 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN WORKFLOW_VERSION DOUBLE
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 8734 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (25)
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 72Stage 22 of 39 done
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 8736 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9011 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0026_insert_loh_alter_cgh_workflows - test name: LOH-SNP-WORKFLOW-TEST
2013-08-07 10:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9205 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0026_insert_loh_alter_cgh_workflows - reference name: LOH-SNP-WORKFLOW-TEST
2013-08-07 10:16:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9690 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10226 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10514 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10735 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10866 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10982 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11174 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11394 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11406 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (26)
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 73Stage 23 of 39 done
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11736 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (27)
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 74Stage 24 of 39 done
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11821 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (28)
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 75Stage 25 of 39 done
2013-08-07 10:16:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 11840 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0029_update_workflow_visualizations_for_versioning - Updating workflow visualization XML for visualization name 'DNA-METHYLATION-WORKFLOW'.
2013-08-07 10:16:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 12311 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0029_update_workflow_visualizations_for_versioning - Updating workflow visualization XML for visualization name 'CHIP-CHIP-WORKFLOW'.
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13232 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (29)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 76Stage 26 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13233 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (30)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 77Stage 27 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13337 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_design ADD COLUMN id_filetoken_gc_statistics BIGINT
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13339 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_design ADD CONSTRAINT id_filetoken_gc_statistics FOREIGN KEY ( id_filetoken_gc_statistics ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13341 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (31)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 78Stage 28 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13343 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: select 1 from dual
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13345 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (32)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 79Stage 29 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13640 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP TABLE SUBMITTED_JOBS
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13643 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE SUBMITTED_JOBS ( UNIQUE_JOB_ID VARCHAR(100) PRIMARY KEY , SERIALIZED_JOB_FILE_TOKEN_ID BIGINT NOT NULL , ID_ACTIVITY_STATUS BIGINT , CREATED_AT TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT FK_SERIALIZED_JOB_FILE_TOKEN_ID FOREIGN KEY (SERIALIZED_JOB_FILE_TOKEN_ID) REFERENCES FILETOKEN (ID_FILETOKEN) , CONSTRAINT FK_ID_ACTIVITY_STATUS FOREIGN KEY (ID_ACTIVITY_STATUS) REFERENCES ACTIVITY_STATUS (ID_ACTIVITY_STATUS) )
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13644 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (34)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 80Stage 30 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13694 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (35)
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 81Stage 31 of 39 done
2013-08-07 10:16:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 13695 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14333 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1200)
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 82Stage 32 of 39 done
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14344 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14627 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14747 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14894 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 14990 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1204)
2013-08-07 10:16:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 83Stage 33 of 39 done
2013-08-07 10:16:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17011 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN modified_outside_of_deva VARCHAR(64) default 'FALSE' not null
2013-08-07 10:16:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17013 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1206)
2013-08-07 10:16:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 84Stage 34 of 39 done
2013-08-07 10:16:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17021 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17410 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17594 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 17774 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 18207 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 18870 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 19656 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 19960 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20179 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20361 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1208)
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 85Stage 35 of 39 done
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20362 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Genome dataset ids used by labeled samples: []
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20362 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Number of xys token id: 0
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20363 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Number of position key file token ids: 0
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20363 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Orphaned genome dataset ids: []
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20363 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Orphaned xys file token ids: []
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20374 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1210)
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 86Stage 36 of 39 done
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20375 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample drop constraint FK_FILETOKEN_XYS;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20599 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column id_filetoken_xys;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20737 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column storing_failure;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20888 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column extraction_failure;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 20890 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample ALTER COLUMN bursting_failure RENAME TO bursting_status;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21013 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table array_tiff DROP COLUMN alignment_status
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21017 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample ALTER COLUMN alignment_failure RENAME TO alignment_status;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21017 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop constraint CONSTRAINT_16724;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21133 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column id_genome_dataset;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21134 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1212)
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 87Stage 37 of 39 done
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21136 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_chromosome_dataset IF EXISTS;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21137 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_gds_ga IF EXISTS;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21137 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_genome_dataset IF EXISTS;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21139 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE CHROMOSOME_DATASET RENAME TO CHROMOSOME_DATASET_OLD;
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21142 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE CHROMOSOME_DATASET ( ID_CHROMOSOME_DATASET bigint AUTO_INCREMENT PRIMARY KEY , ID_FILETOKEN bigint DEFAULT NULL, ID_ATTRIBUTES_FILETOKEN bigint DEFAULT NULL, CHROMOSOME_NAME varchar(64) NOT NULL, NUM_RECORDS bigint NOT NULL, MIN_VALUE FLOAT, FIRST_QUARTILE FLOAT, MEDIAN FLOAT, THIRD_QUARTILE FLOAT, MAX_VALUE FLOAT, MIN_POSITION bigint NOT NULL, MAX_POSITION bigint NOT NULL, STORED_AT timestamp DEFAULT CURRENT_TIMESTAMP() NOT NULL, RECORD_START_INDEX BIGINT NOT NULL DEFAULT 0, ID_GENOME_DATASET BIGINT NOT NULL, ID_FILETOKEN_LUCENE_ANCHOR BIGINT, CONSTRAINT FK_ID_FILETOKEN FOREIGN KEY (ID_FILETOKEN) REFERENCES FILETOKEN (ID_FILETOKEN), CONSTRAINT FK_ID_ATTRIBUTES_FILETOKEN FOREIGN KEY (ID_ATTRIBUTES_FILETOKEN) REFERENCES FILETOKEN (ID_FILETOKEN), CONSTRAINT FK_ID_GENOME_DATASET FOREIGN KEY (ID_GENOME_DATASET) REFERENCES GENOME_DATASET (ID_GENOME_DATASET), );
2013-08-07 10:16:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21148 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO CHROMOSOME_DATASET ( ID_CHROMOSOME_DATASET,ID_FILETOKEN,ID_ATTRIBUTES_FILETOKEN, CHROMOSOME_NAME,NUM_RECORDS,MIN_VALUE, FIRST_QUARTILE,MEDIAN,THIRD_QUARTILE, MAX_VALUE,MIN_POSITION,MAX_POSITION, STORED_AT,ID_GENOME_DATASET,ID_FILETOKEN_LUCENE_ANCHOR) SELECT cdf.ID_CHROMOSOME_DATA_FILE,cdf.ID_FILETOKEN,cdf.ID_ATTRIBUTES_FILETOKEN, CHROMOSOME_NAME,NUM_RECORDS,MIN_VALUE, FIRST_QUARTILE,MEDIAN,THIRD_QUARTILE, MAX_VALUE,MIN_POSITION,MAX_POSITION, STORED_AT, cd.ID_GENOME_DATASET,cd.ID_FILETOKEN_LUCENE_ANCHOR FROM chromosome_data_file cdf, CHROMOSOME_DATASET_OLD cd WHERE cdf.id_chromosome_data_file=cd.id_chromosome_data_file;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21269 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: drop table CHROMOSOME_DATASET_OLD;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21481 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: drop table chromosome_data_file;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21619 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_lucene_anchor BIGINT NULL DEFAULT NULL;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21804 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_data BIGINT DEFAULT NULL;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21933 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_attributes BIGINT DEFAULT NULL;
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21934 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_chromosome_dataset AS SELECT cds.id_chromosome_dataset , cds.id_genome_dataset , cds.id_filetoken_lucene_anchor , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id , cds.chromosome_name , cds.num_records AS data_file_num_records , cds.min_value , cds.first_quartile , cds.median , cds.third_quartile , cds.max_value , cds.min_position , cds.max_position , cds.record_start_index , cds.num_records , cds.id_filetoken AS data_filetoken_id , cds.id_attributes_filetoken AS attributes_filetoken_id FROM chromosome_dataset AS cds
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21945 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_gds_ga AS SELECT id_genome_dataset , original_file_name AS gds_original_filename , data_type AS gds_data_type , is_import AS gds_is_import , stored_at AS gds_stored_at , is_annotation AS gds_is_annotation , id_filetoken_lucene_anchor AS genome_dataset_lucene_anchor_ft_id , id_filetoken_data AS genome_dataset_data_ft_id , id_filetoken_attributes AS genome_dataset_attributes_ft_id , vw_genome_assembly.id_genome_assembly , genome_assembly_name , accession_identifier , genome_assembly_is_user_defined , genome_assembly_created_at , id_genome_source , genome_source_description , genome_source_name , id_organism , organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_dataset INNER JOIN vw_genome_assembly ON genome_dataset.id_genome_assembly = vw_genome_assembly.id_genome_assembly
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21957 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_dataset AS SELECT gds.id_genome_dataset , gds.gds_original_filename , gds.gds_data_type , gds.gds_is_import , gds.gds_is_annotation , gds.gds_stored_at , gds.id_genome_assembly , gds.genome_assembly_name , gds.accession_identifier , gds.genome_assembly_created_at , gds.genome_assembly_is_user_defined , gds.id_genome_source , gds.genome_source_description , gds.genome_source_name , gds.id_organism , gds.scientific_name , gds.common_name , gds.ncbi_taxon_id , gds.organism_is_user_defined , cds.id_chromosome_dataset , cds.chromosome_name , coalesce(cds.id_filetoken, gds.genome_dataset_data_ft_id) AS data_filetoken_id , coalesce(cds.id_attributes_filetoken, gds.genome_dataset_attributes_ft_id) AS attributes_filetoken_id , cds.min_value , cds.first_quartile , cds.median , cds.third_quartile , cds.max_value , cds.min_position , cds.max_position , cds.record_start_index , cds.num_records , cds.id_filetoken_lucene_anchor AS chromosome_dataset_lucene_anchor_ft_id , gds.genome_dataset_lucene_anchor_ft_id AS genome_dataset_lucene_anchor_ft_id , gds.genome_dataset_data_ft_id , gds.genome_dataset_attributes_ft_id FROM vw_gds_ga as gds LEFT OUTER JOIN chromosome_dataset AS cds ON gds.id_genome_dataset = cds.id_genome_dataset
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21959 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1218)
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 88Stage 38 of 39 done
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21962 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE GENOME_DATASET_CACHE ( ID_GENOME_DATASET_CACHE bigint AUTO_INCREMENT PRIMARY KEY NOT NULL, CACHE_KEY bigint NOT NULL, ID_GENOME_DATASET bigint, CREATED_AT timestamp DEFAULT CURRENT_TIMESTAMP() NOT NULL, CONSTRAINT FK_GDS_CACHE FOREIGN KEY (ID_GENOME_DATASET) REFERENCES GENOME_DATASET(ID_GENOME_DATASET) ON DELETE CASCADE );
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21962 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE UNIQUE INDEX GDS_CACHE_IDX01 ON GENOME_DATASET_CACHE(CACHE_KEY, ID_GENOME_DATASET);
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21967 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1225)
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 90Stage 39 of 39 done
2013-08-07 10:16:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 21975 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 22246 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 22436 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1226)
2013-08-07 10:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:00 AM com.nimblegen.deva.dbmigrate.Migrator doMigrations
2013-08-07 10:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Updated to version 1226
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 22479 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:42ms)
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 22520 [main] DEBUG com.nimblegen.deva.common.configuration.DevaConfigurationUtil - A version.properties file has been created with project.type=DEVA and project.version=1.2.1
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Finished driving progress bar.
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Removed an expired listener.
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Progress bar being left intact for further processing.
2013-08-07 10:17:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 100Database installed
2013-08-07 10:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 22521 [main] INFO com.nimblegen.deva.dbmigrate.RunDBMigrate - runDbMigrate completed.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, Error StreamLogger 1385729494 ending.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, StreamWorker 514120355 ending.
2013-08-07 10:17:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, DBMigrate ran successfully.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, DBMigrate is finished. Now launching DEVA...
2013-08-07 10:17:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Command: java -Xms7150m -Xmx7150m -Dsun.java2d.opengl=false -Dsun.java2d.nodraw=false -Dsun.java2d.d3d=false -Duser.language=en -Duser.region=US -cp C:\Deva\DEVA.jar com.nimblegen.deva.app.RunDevaApp
2013-08-07 10:17:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Project directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA
2013-08-07 10:17:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, Working directory: C:\Deva
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, StreamWorker 1929360222 starting.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, Error StreamLogger 394032651 starting.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher, CombinedLauncher ending.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/C:/Deva/DEVA.jar!/logback.xml]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,728 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@4c5e176f - URL [jar:file:/C:/Deva/DEVA.jar!/logback.xml] is not of type file
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,891 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,896 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,936 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen level set to DEBUG
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,936 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen.common.jobcontroller level set to ERROR
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,937 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - ROOT level set to ERROR
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,937 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT]
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10:17:01,939 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
2013-08-07 10:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:17:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 372 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Starting H2 in EMBEDDED mode.
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:02 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@72e6f7d2: startup date [Wed Aug 07 10:17:02 PDT 2013]; root of context hierarchy
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:02 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services_h2_embedded.xml]
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:02 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services.xml]
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:02 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/daos.xml]
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:02 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-07 10:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Loading XML bean definitions from URL [file:Z:/users/c/csather/TO_BE_REVIEWED_SCANS/08072013/OysterArray/DEVA/config/sys_config/db/h2-embedded-datasource.xml]
2013-08-07 10:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:03 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-07 10:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@35cf7491: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,fileTokenFactory,fileTokenDao,organismFactory,organismDao,genomeSourceFactory,genomeSourceDao,genomeAssyFactory,genomeAssyDao,sampleFactory,sampleDao,arrayDesignFactory,arrayDesignDao,arrayResultFactory,arrayResultDao,sampleTrackingControlSetFactory,sampleTrackingControlSetDao,labeledSampleFactory,labeledSampleDao,slideDesignFactory,slideDesignDao,slideResultFactory,slideResultDao,arrayTiffFactory,arrayTiffDao,decodedNumberFactory,decodedNumberDao,analysisWorkflowFactory,analysisWorkflowDao,workflowDataFactory,workflowDataDao,monitoredFileFactory,monitoredFileDao,importedFileAssociationsDao,genomeAssemblySequenceFactory,genomeAssemblySequenceDao,settingFactory,settingDao,workflowTemplateFactory,workflowTemplateDao,visualizationFactory,visualizationDao,genomeDatasetDboFactory,genomeDatasetDao,valuedGenomeDatasetAttributesDao,genomeDatasetCacheDboFactory,genomeDatasetCacheDao,exportFactory,exportDao,containerGenomeDatasetDao,segmntStatsFactory,segmntStatsDao,designAnnotationFactory,designAnnotationDao,jobsRecoveryDao,activityStatusDao,qualityControlReportFactory,qualityControlReportDao,genomeDatasetPioService,slideService,analysisWorkflowService,workflowTransportService,workflowTemplateService,visualizationService,qualityControlReportService,snpHeterozygosityFrequencyService,genomeDatasetCacheService,fileMoverFactory,fileService,filePioService,genomeAssyService,genomeAssyPioService,applicationConfiguration,systemConfiguration,designAnnotationService,devaArchiveImportService,genomeAssemblySequenceService,sequenceStatsService,systemConfigurationService,dataWriterFactory,xysExporter,gffDataExporter,jobsRecoveryService,trackSettingsService,paneSettingsService,plotSettingsService,genomeAssemblyController,tiffImportMonitor,manualAlignmentController,tiffImportController,slidesTableController,genomeDatasetController,slideResultSearchController,arrayResultSearchController,exportService,jobStatusDetailController,propertyConfigurer,h2datasource,datasource,dialect,template]; root of factory hierarchy
2013-08-07 10:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:03 AM java.util.prefs.WindowsPreferences
2013-08-07 10:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.
2013-08-07 10:17:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2978 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:733ms)
2013-08-07 10:17:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3681 [main] DEBUG com.nimblegen.deva.common.jobservice.JobService - job service resource limit for ESTIMATED_MEMORY_IN_KB is set to 6800973.
2013-08-07 10:17:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 10Startup has begun
2013-08-07 10:17:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 25Fonts are loaded
2013-08-07 10:17:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 55SlideMainTabPanel initialized
2013-08-07 10:17:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 60TemplateTabPanel finished
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 70AnalysisPanel finished
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 75AnnotationPanel finished
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 80ExternalDataPanel finished
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 85ExportPanel finished
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 95JobsPanel finished
2013-08-07 10:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9150 [AWT-EventQueue-0] INFO com.nimblegen.common.app.guicomponents.AppMainFrame - Roche NimbleGen, Inc. DEVA 1.2.1 2012-0426-1812-3714
2013-08-07 10:17:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9175 [AWT-EventQueue-0] DEBUG com.nimblegen.common.app.guicomponents.AppMainFrame - frame size from persistence is maximized:true width:1024.0 height:768.0
2013-08-07 10:17:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 97MainFrame is finished
2013-08-07 10:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:11 AM org.jdesktop.application.LocalStorage getId
2013-08-07 10:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) WARNING: unspecified resource Application.id using RunDevaApp
2013-08-07 10:17:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Finished driving progress bar.
2013-08-07 10:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Aug 7, 2013 10:17:11 AM org.jdesktop.application.LocalStorage getId
2013-08-07 10:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) WARNING: unspecified resource Application.vendorId using UnknownApplicationVendor
2013-08-07 10:17:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Removed an expired listener.
2013-08-07 10:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Closing progress bar.
2013-08-07 10:17:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 100Startup complete
2013-08-07 10:17:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9913 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.RunDevaApp$1 - Project upgrade argument has been set to: false
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: alpha value out of range
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.AlphaComposite.(Unknown Source)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.AlphaComposite.getInstance(Unknown Source)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.AlphaComposite.derive(Unknown Source)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.lafwidget.LafWidgetUtilities.getAlphaComposite(LafWidgetUtilities.java:615)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.substance.internal.ui.SubstanceButtonUI.__org__pushingpixels__substance__internal__ui__SubstanceButtonUI__icon__paintIcon(SubstanceButtonUI.java:438)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.substance.internal.ui.SubstanceButtonUI.paintIcon(SubstanceButtonUI.java)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.substance.internal.ui.SubstanceButtonUI.paint(SubstanceButtonUI.java:345)
2013-08-07 10:21:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.substance.internal.ui.SubstanceButtonUI.__org__pushingpixels__substance__internal__ui__SubstanceButtonUI__update(SubstanceButtonUI.java:491)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at org.pushingpixels.substance.internal.ui.SubstanceButtonUI.update(SubstanceButtonUI.java)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.JComponent.paintComponent(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.JComponent.paint(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.JComponent.paintToOffscreen(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.BufferStrategyPaintManager.paint(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.RepaintManager.paint(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.JComponent._paintImmediately(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.JComponent.paintImmediately(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.RepaintManager.seqPaintDirtyRegions(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.event.InvocationEvent.dispatch(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventQueue.dispatchEvent(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
2013-08-07 10:21:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) at java.awt.EventDispatchThread.run(Unknown Source)
2013-08-07 10:21:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 281278 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.guicomponents.dialog.ManualDesignArchiveAndTiffImportDialog - creating design import worker in event handler for DESIGN ONLY.
2013-08-07 10:21:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 281309 [SwingWorker-pool-5-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - new Attempting slide import, barcode = 546306.
2013-08-07 10:21:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 284382 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing NCD file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth_HX3.ncd
2013-08-07 10:21:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 284538 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing NDF file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.ndf
2013-08-07 10:21:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 284694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing POS file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.pos
2013-08-07 10:23:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 363584 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ControlProbeExtractor - Non-experimental probes extracted.
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365237 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - Creating new slide result.
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365237 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 1)
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365253 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 2)
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365253 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 3)
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365253 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 4)
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365269 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 5)
2013-08-07 10:23:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365269 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id = 6)
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365799 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing design for slide barcode 546306[COMPLETED] was removed from submitted tasks.
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365815 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365846 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing design for slide barcode 546306[COMPLETED] was removed from job service submissions.
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 365955 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.GffFileImporter - Importing GFF file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.gff
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366220 [Directory Monitor] DEBUG com.nimblegen.common.services.controllers.TiffImportController - Starting import of TIFF file:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366220 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.controllers.TiffImportController$TiffImporter$1 - Importing TIFF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366220 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - Did not find an existing result that matches barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3 trying to find a placeholder slide result
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366220 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found a placeholder slide result for barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366267 [Directory Monitor] DEBUG com.nimblegen.common.services.controllers.TiffImportController - Starting import of TIFF file:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:23:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366267 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.controllers.TiffImportController$TiffImporter$1 - Importing TIFF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:23:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366766 [pool-1-thread-1] INFO com.nimblegen.common.services.infrastructure.GffFileImporter - Lines imported: 28027 from file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.gff
2013-08-07 10:23:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 366844 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:78
2013-08-07 10:23:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 374363 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:7597
2013-08-07 10:23:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 380057 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [EMPTY] to [IMAGE_FOUND].
2013-08-07 10:23:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 380759 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found 1 existing slide results that match barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3
2013-08-07 10:23:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 380869 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found an existing result that matches barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3 that has no image for dye: 532
2013-08-07 10:23:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 381025 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:14259
2013-08-07 10:23:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 381321 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.FileImportTask - Associating annotation dataset id = {1} with slide design {RngSlideDesign[slide barcode: 546306, marketing format name: 3x720K]}.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382585 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:1264
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382585 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.DesignAnnotationDboFactory - INSERT INTO genome_dataset_for_design ( id_slide_design , id_genome_dataset ) VALUES ( ?, ? ) 0
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382600 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.FileImportTask - Associating annotation dataset id = {1} with md5sum{699ad175b89c25e105912dcf28a5083e}.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382741 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing Annotation from [121101_OysterV9_MG_meth.gff][COMPLETED] was removed from submitted tasks.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382756 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382803 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 382803 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing Annotation from [121101_OysterV9_MG_meth.gff][COMPLETED] was removed from job service submissions.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 383068 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing slide for barcode: 546306 dye: Cy5.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 383146 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - No NDF provided. Bursting does not require NDF file. Using NCD as NDF file.
2013-08-07 10:23:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 383177 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:23:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 392038 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [EMPTY] to [IMAGE_FOUND].
2013-08-07 10:23:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896196345A03_1428628752.tif
2013-08-07 10:23:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Error: Could not load mediaLib accelerator wrapper classes. Continuing in pure Java mode.
2013-08-07 10:23:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Occurs in: com.sun.media.jai.mlib.MediaLibAccessor
2013-08-07 10:23:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) com.sun.media.jai.mlib.MediaLibLoadException
2013-08-07 10:23:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896196345A02_1428628752.tif
2013-08-07 10:23:47,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896196345A01_1428628752.tif
2013-08-07 10:23:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 412147 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-07 10:23:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 414565 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 417653 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [BURSTED].
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 417763 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 417903 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done bursting slide into array image(s) for barcode: 546306 dye: Cy5
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 417903 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:burst slide tiff[546306] dye[Cy5].[COMPLETED] was removed from submitted tasks.
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 418043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A03 dye:Cy5.
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 418106 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:23:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 418106 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:24:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:24:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:24:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:24:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:24:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:24:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:24:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:24:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 433644 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:24:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 445094 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A03:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-07 10:24:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 445219 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:24:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 445344 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>1 name=>DESIGN_ID value=>577051
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>2 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>3 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>4 name=>SAMPLE_TRACKING value=>1,9,17
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>5 name=>control:sample_tracking:A_A01 value=>1
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>6 name=>control:sample_tracking:B_A01 value=>1,9,17
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>7 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>8 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>9 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>10 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>11 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447028 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>12 name=>CHIP_ID value=>546306
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447044 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>13 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447044 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>14 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447138 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:24:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447262 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[6] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896232553_876407753.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896255407_1960399166.properties
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447387 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA03 dye:Cy5
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447496 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447496 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:6.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447621 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A02 dye:Cy5.
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447715 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:24:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 447715 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:24:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:24:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:24:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:24:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:24:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:24:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:24:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:24:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 463018 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:24:56,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 474360 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A02:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-07 10:24:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 474516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:24:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 474640 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477698 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>15 name=>DESIGN_ID value=>577051
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477698 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>16 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477698 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>17 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477698 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>18 name=>SAMPLE_TRACKING value=>17
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477714 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>19 name=>control:sample_tracking:A_A01 value=>None
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477714 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>20 name=>control:sample_tracking:B_A01 value=>17
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477714 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>21 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477745 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>22 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477745 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>23 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477745 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>24 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477760 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>25 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477760 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>26 name=>CHIP_ID value=>546306
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477760 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>27 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477792 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>28 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 477885 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 478010 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[2] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896235065_1513261685.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896285016_1878691348.properties
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 478135 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA02 dye:Cy5
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 478228 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:24:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 478228 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:2.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:25:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 479305 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[6], but stopped because control alignment is not set.
2013-08-07 10:25:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 479305 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[6], but stopped because control alignment is not set.
2013-08-07 10:25:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 484843 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:25:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 485030 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A01 dye:Cy5.
2013-08-07 10:25:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 485077 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:25:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 485077 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:25:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:25:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:25:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:25:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:25:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:25:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:25:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:25:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 501940 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:25:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 512860 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A01:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-07 10:25:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 512970 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:25:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>29 name=>DESIGN_ID value=>577051
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>30 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>31 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>32 name=>SAMPLE_TRACKING value=>1
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>33 name=>control:sample_tracking:A_A01 value=>1
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>34 name=>control:sample_tracking:B_A01 value=>None
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>35 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>36 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>37 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>38 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>39 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>40 name=>CHIP_ID value=>546306
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>41 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513781 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>42 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513890 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [COMPLETE].
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 513999 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[4] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896237046_266144094.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896324094_298758856.properties
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 514108 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA01 dye:Cy5
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 514202 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [COMPLETE] to [COMPLETE].
2013-08-07 10:25:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 514218 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:4.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:25:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 514436 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[2], but stopped because control alignment is not set.
2013-08-07 10:25:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 514436 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[2], but stopped because control alignment is not set.
2013-08-07 10:25:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 515793 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:25:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 516058 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[4], but stopped because control alignment is not set.
2013-08-07 10:25:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 516058 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[4], but stopped because control alignment is not set.
2013-08-07 10:25:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:25:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518289 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:25:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518352 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:25:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:Importing Image for slide barcode 546306 dye:Cy5[COMPLETED] was removed from job service submissions.
2013-08-07 10:25:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518617 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing slide for barcode: 546306 dye: Cy3.
2013-08-07 10:25:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518617 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - No NDF provided. Bursting does not require NDF file. Using NCD as NDF file.
2013-08-07 10:25:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 518632 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:25:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896208420A03_2132030761.tif
2013-08-07 10:25:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896208420A02_2132030761.tif
2013-08-07 10:25:55,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896208420A01_2132030761.tif
2013-08-07 10:26:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 546229 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-07 10:26:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 550020 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-07 10:26:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 553951 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [BURSTED].
2013-08-07 10:26:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554060 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:26:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554185 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done bursting slide into array image(s) for barcode: 546306 dye: Cy3
2013-08-07 10:26:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554185 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:burst slide tiff[546306] dye[Cy3].[COMPLETED] was removed from submitted tasks.
2013-08-07 10:26:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A01 dye:Cy3.
2013-08-07 10:26:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554419 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:26:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 554419 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:26:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:26:31,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:26:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 571064 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:26:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 582140 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A01:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 2, 2]] confirmed: true
2013-08-07 10:26:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 582281 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:26:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 582390 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>43 name=>DESIGN_ID value=>577051
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>44 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>45 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>46 name=>SAMPLE_TRACKING value=>None
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>47 name=>control:sample_tracking:A_A01 value=>None
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>48 name=>control:sample_tracking:B_A01 value=>None
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>49 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>50 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>51 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>52 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>53 name=>MAGIC_ALIGNMENT4_A01 value=>6565409
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>54 name=>CHIP_ID value=>546306
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>55 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>56 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586633 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586758 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[3] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896372610_483929548.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896392797_976922616.properties
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 586898 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA01 dye:Cy3
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 587007 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 587007 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:3.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:26:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 587226 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A03 dye:Cy3.
2013-08-07 10:26:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 587382 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:26:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 587382 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:27:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:27:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 601781 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:27:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 612623 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A03:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-07 10:27:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 612763 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:27:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 612919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>57 name=>DESIGN_ID value=>577051
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>58 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>59 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>60 name=>SAMPLE_TRACKING value=>None
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>61 name=>control:sample_tracking:A_A01 value=>None
2013-08-07 10:27:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>62 name=>control:sample_tracking:B_A01 value=>None
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618301 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>63 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618317 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>64 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618317 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>65 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618317 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>66 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618332 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>67 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618332 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>68 name=>CHIP_ID value=>546306
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618332 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>69 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618332 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>70 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618441 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618551 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[5] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896365309_497339705.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896423622_1302039155.properties
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618691 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA03 dye:Cy3
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618785 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-07 10:27:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 618785 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:5.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:27:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 626132 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:27:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 626257 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A02 dye:Cy3.
2013-08-07 10:27:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 626273 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:27:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 626273 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Looking for fiducial corners...
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperLeft
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential UpperRight
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerLeft
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Found potential LowerRight
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Fine tuning...
2013-08-07 10:27:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,
2013-08-07 10:27:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 643370 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-07 10:27:55,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 653635 [pool-1-thread-1] INFO com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A02:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-07 10:27:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 653744 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-07 10:27:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 653854 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654899 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>71 name=>DESIGN_ID value=>577051
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654899 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>72 name=>DESIGN_ID1_A01 value=>577051
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654899 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>73 name=>DESIGN_ID2_A01 value=>577051
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654899 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>74 name=>SAMPLE_TRACKING value=>None
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>75 name=>control:sample_tracking:A_A01 value=>None
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>76 name=>control:sample_tracking:B_A01 value=>None
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>77 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>78 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>79 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654914 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>80 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654930 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>81 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654930 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>82 name=>CHIP_ID value=>546306
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654930 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>83 name=>CHIP_ID1_A01 value=>546306
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 654946 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>84 name=>CHIP_ID2_A01 value=>546306
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 655055 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [COMPLETE].
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 655180 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[1] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896369865_1639199465.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896465212_182487560.properties
2013-08-07 10:27:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 655289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA02 dye:Cy3
2013-08-07 10:27:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 655398 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [COMPLETE] to [COMPLETE].
2013-08-07 10:27:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 655398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:1.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:27:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 657660 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661622 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661638 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661654 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661654 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:Importing Image for slide barcode 546306 dye:Cy3[COMPLETED] was removed from job service submissions.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661810 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:17 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:18 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661950 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 156ms
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661981 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 661981 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662044 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662059 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662059 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662075 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662168 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662168 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896232553_876407753.tif
2013-08-07 10:28:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 662200 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896483870_1884134143\546306A03_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:28:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 664493 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:28:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 664493 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:28:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896483870_1884134143\546306A03_121101-OysterV9-MG-meth-HX3_635.xys...
2013-08-07 10:28:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 689203 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896483870_1884134143\546306A03_121101-OysterV9-MG-meth-HX3_635.xys
2013-08-07 10:28:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 689203 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:28:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 689297 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896483870_1884134143\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:28:20 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896483870_1884134143\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:28:20 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:28:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693306 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T102834_635.xys
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693509 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693509 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693774 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693774 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693852 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693852 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) X, Y and Signal Report Workflow 2013-08-07 10:25:00[COMPLETED] was removed from job service submissions.
2013-08-07 10:28:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 693914 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:23 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:24 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694523 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 624ms
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694538 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694538 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694601 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694632 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694663 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 694694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 695100 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 695100 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896232553_876407753.tif
2013-08-07 10:28:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 695178 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896516832_181933036\546306A03_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:28:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 696504 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:28:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 696504 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:29:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 758436 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896516832_181933036\546306A03_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-07 10:29:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 758436 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:29:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 758826 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896516832_181933036\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:28:52 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896516832_181933036\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:28:52 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:30:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 779839 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T103001_635.pair
2013-08-07 10:30:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 779980 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 10:30:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 779980 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780463 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780479 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780510 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780510 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-07 10:25:04[COMPLETED] was removed from job service submissions.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780588 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780931 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 780963 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 781072 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 781134 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 781134 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:30:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 781181 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:30:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 794254 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:30:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 794269 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:30:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896232553_876407753.xys...
2013-08-07 10:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 804004 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 804004 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 804019 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 804051 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 808153 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:30:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 813504 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832380 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832957 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832957 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832973 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:29 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:30 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 52416ms
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 832989 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 833035 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 833051 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 833051 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 833067 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:30:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 833082 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 864516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 864532 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 864532 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 864969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 864969 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865000 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-07 10:25:05[COMPLETED] was removed from job service submissions.
2013-08-07 10:31:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865062 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:35 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:36 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865343 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 296ms
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865359 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865359 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865390 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865390 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865405 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865421 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865515 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865515 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896232553_876407753.tif
2013-08-07 10:31:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 865530 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896687200_2131291308\546306A03_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:31:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 867948 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:31:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 867948 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:32:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 908306 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896687200_2131291308\546306A03_121101-OysterV9-MG-meth-HX3_635.ftr
2013-08-07 10:32:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 908306 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:32:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 908711 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896687200_2131291308\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:31:42 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896687200_2131291308\546306A03_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:31:42 PDT 2013 border=0 ul_x=134.378 ul_y=133.412 ur_x=2991.781 ur_y=126.571 lr_x=3002.214 lr_y=3943.390 ll_x=145.011 ll_y=3949.990 qcscore=0.196 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927462 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T103229_635.ftr
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927712 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927712 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927728 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927728 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) Feature Report Workflow 2013-08-07 10:25:05[COMPLETED] was removed from job service submissions.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927806 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927962 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927962 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:53 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927962 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:54 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927962 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927962 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927977 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 187ms
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927993 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 927993 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928024 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928055 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928086 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:32:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928118 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:32:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928757 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:32:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 928757 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896235065_1513261685.tif
2013-08-07 10:32:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 929116 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896750770_2085014639\546306A02_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:32:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 931394 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:32:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 931394 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:32:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896750770_2085014639\546306A02_121101-OysterV9-MG-meth-HX3_635.xys...
2013-08-07 10:32:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 957149 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896750770_2085014639\546306A02_121101-OysterV9-MG-meth-HX3_635.xys
2013-08-07 10:32:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 957149 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:32:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 957508 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896750770_2085014639\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:32:45 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896750770_2085014639\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:32:45 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:33:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 963202 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T103304_635.xys
2013-08-07 10:33:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 963623 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 10:33:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 963623 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:33:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964294 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:33:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964310 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964388 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964388 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) X, Y and Signal Report Workflow 2013-08-07 10:25:36[COMPLETED] was removed from job service submissions.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964481 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:59 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:60 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964824 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 374ms
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964871 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964887 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964902 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 964902 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 965012 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 965012 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896235065_1513261685.tif
2013-08-07 10:33:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 965043 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896786697_1896286499\546306A02_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:33:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 966213 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:33:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 966213 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:34:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1025524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896786697_1896286499\546306A02_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-07 10:34:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1025524 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:34:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1025696 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896786697_1896286499\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:33:20 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896786697_1896286499\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:33:20 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:34:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1057348 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T103438_635.pair
2013-08-07 10:34:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1057723 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 10:34:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1057723 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:34:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058222 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:34:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058222 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058347 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058347 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-07 10:25:36[COMPLETED] was removed from job service submissions.
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058409 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058768 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058783 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058799 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058799 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058877 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058877 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:34:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1058908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1071872 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1071965 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:34:53,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896235065_1513261685.xys...
2013-08-07 10:35:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1085023 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:35:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1085023 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:35:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1085038 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:35:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1085038 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:35:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1089157 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:35:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1094242 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117580 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117861 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117876 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117892 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:65 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:66 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117908 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 59499ms
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117923 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117923 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117954 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117986 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1117986 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1118001 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1118017 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1150418 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1150449 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1150449 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1151104 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1151104 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1151136 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1151136 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-07 10:25:36[COMPLETED] was removed from job service submissions.
2013-08-07 10:36:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1151198 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:36:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152306 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:36:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152306 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:71 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:36:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152306 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:72 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152306 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152321 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 1139ms
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152337 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152337 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152384 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152399 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152430 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1152446 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1153195 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1153195 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896235065_1513261685.tif
2013-08-07 10:36:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1153226 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896974896_449527914\546306A02_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:36:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1155207 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:36:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1155207 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:36:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1197327 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896974896_449527914\546306A02_121101-OysterV9-MG-meth-HX3_635.ftr
2013-08-07 10:36:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1197327 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:36:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1197717 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896974896_449527914\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:36:28 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375896974896_449527914\546306A02_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:36:28 PDT 2013 border=0 ul_x=142.047 ul_y=137.301 ur_x=2998.994 ur_y=130.526 lr_x=3008.301 lr_y=3947.152 ll_x=150.912 ll_y=3953.311 qcscore=0.188 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1218356 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T103719_635.ftr
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1218559 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1218559 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219058 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219058 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219089 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219089 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) Feature Report Workflow 2013-08-07 10:25:37[COMPLETED] was removed from job service submissions.
2013-08-07 10:37:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219230 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:89 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:90 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219963 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1219963 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 811ms
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220025 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220025 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220072 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220072 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220103 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:37:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220119 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:37:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220384 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:37:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220384 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896237046_266144094.tif
2013-08-07 10:37:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1220556 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897042195_512756515\546306A01_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:37:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1222365 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:37:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1222365 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:37:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897042195_512756515\546306A01_121101-OysterV9-MG-meth-HX3_635.xys...
2013-08-07 10:37:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1247232 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897042195_512756515\546306A01_121101-OysterV9-MG-meth-HX3_635.xys
2013-08-07 10:37:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1247232 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:37:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1247622 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897042195_512756515\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:37:37 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897042195_512756515\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:37:37 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1252941 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T103754_635.xys
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253019 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253019 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253191 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253191 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253207 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253207 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) X, Y and Signal Report Workflow 2013-08-07 10:25:37[COMPLETED] was removed from job service submissions.
2013-08-07 10:37:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253269 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:95 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:96 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253924 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 671ms
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253955 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1253955 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254002 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254018 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254033 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:37:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254049 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:37:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254579 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:37:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254579 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896237046_266144094.tif
2013-08-07 10:37:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1254611 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897076265_2133632955\546306A01_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:37:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1256779 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:37:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1256779 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:38:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1313423 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897076265_2133632955\546306A01_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-07 10:38:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1313423 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:38:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1313625 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897076265_2133632955\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:38:13 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897076265_2133632955\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:38:13 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341518 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T103923_635.pair
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341612 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341612 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341752 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341752 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341768 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341768 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-07 10:25:38[COMPLETED] was removed from job service submissions.
2013-08-07 10:39:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1341846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342408 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342439 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342486 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342517 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342751 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342844 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342844 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:39:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1342938 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:39:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1355699 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:39:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1355714 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:39:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896237046_266144094.xys...
2013-08-07 10:39:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1365823 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:39:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1365823 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:39:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1365854 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:39:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1365886 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:39:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1369942 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:39:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1376072 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1392702 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393264 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393295 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393310 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:101 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:40:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:102 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 51511ms
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393326 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393342 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393373 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393373 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393388 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393404 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:40:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1393404 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:40:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425259 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 10:40:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425275 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 10:40:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425275 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425415 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425415 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425431 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425431 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-07 10:25:38[COMPLETED] was removed from job service submissions.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425493 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:107 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:108 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425602 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 124ms
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425618 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425618 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425649 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425696 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425712 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1425712 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1426055 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1426055 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896237046_266144094.tif
2013-08-07 10:40:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1426102 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897247772_76493345\546306A01_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-07 10:40:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1428364 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:40:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1428364 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:41:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1470484 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897247772_76493345\546306A01_121101-OysterV9-MG-meth-HX3_635.ftr
2013-08-07 10:41:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1470484 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:41:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1470671 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897247772_76493345\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:41:02 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897247772_76493345\546306A01_121101-OysterV9-MG-meth-HX3_635.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:41:02 PDT 2013 border=0 ul_x=148.309 ul_y=140.495 ur_x=3005.352 ur_y=134.244 lr_x=3013.544 lr_y=3949.859 ll_x=156.251 ll_y=3955.933 qcscore=0.214 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1487597 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T104149_635.ftr
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1487847 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1487847 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488205 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488205 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488299 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:41:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488299 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) Feature Report Workflow 2013-08-07 10:25:38[COMPLETED] was removed from job service submissions.
2013-08-07 10:41:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488471 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:41:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488829 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:41:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488907 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:41:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1488985 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:41:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1489063 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-07 10:41:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1489391 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:41:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1489453 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:41:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1489453 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:41:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1489563 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:42:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1503618 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:42:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1503681 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:42:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896372610_483929548.xys...
2013-08-07 10:42:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1514242 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:42:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1514304 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:42:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1514367 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:42:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1514413 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:42:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1518937 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:42:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1524850 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1546518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1546861 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1546955 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547017 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:158 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:156 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547080 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 58672ms
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547127 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547127 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:42:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547205 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547610 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547657 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547719 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1547766 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-07 10:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1548328 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:42:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1548421 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:42:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1548421 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:42:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1548531 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:43:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1559685 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:43:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1559747 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:43:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896237046_266144094.xys...
2013-08-07 10:43:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1572789 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:43:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1572820 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:43:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1572898 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:43:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1572960 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:43:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1577344 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:43:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1583990 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:43:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1609730 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:43:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610073 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610338 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610385 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:151 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610432 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 63274ms
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610494 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610494 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610525 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:160 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610525 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610556 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:155 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610556 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610572 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:162 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610572 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610588 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:159 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610588 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1610666 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-07 10:43:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1613864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:161 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1613910 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-07 10:43:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1613910 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1614456 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1614503 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: 0.0020
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1614956 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1614956 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:153 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1614956 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615049 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-07 10:43:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615127 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-07 10:43:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615704 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-07 10:43:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615704 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:157 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:43:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615751 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-07 10:43:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1615751 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:43:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1616001 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:44:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1672925 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:44:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1672925 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:44:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1673003 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-07 10:44:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1673019 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-07 10:44:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1676201 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:3198
2013-08-07 10:45:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1679181 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:6178
2013-08-07 10:45:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1679228 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-07 10:45:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1679228 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:45:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1679290 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-07 10:45:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1679353 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341...................
2013-08-07 10:45:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460....
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489....
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546...
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763...................
2013-08-07 10:45:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335...................
2013-08-07 10:45:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696.
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438...................
2013-08-07 10:45:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409.......
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096...................
2013-08-07 10:45:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662...................
2013-08-07 10:45:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513...................
2013-08-07 10:45:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619...................
2013-08-07 10:45:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773..
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818...................
2013-08-07 10:45:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998...................
2013-08-07 10:45:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999...................
2013-08-07 10:45:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1696684 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:152 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:45:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1696762 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-07 10:45:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1696762 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-07 10:45:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1696840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-07 10:45:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1696856 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-07 10:45:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1700163 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:3323
2013-08-07 10:45:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1702815 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:5975
2013-08-07 10:45:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1702862 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-07 10:45:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1702862 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:45:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1702940 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:46:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1744295 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:46:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1744295 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1744358 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-07 10:46:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1744420 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1745699 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:154 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1745746 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1745746 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1745809 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1746277 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:46:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1746277 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1746339 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1746355 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1746401 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:62
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747088 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:749
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747135 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-07 10:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747135 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747478 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747493 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747509 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747509 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5/Cy3) DNA Methylation Workflow 2013-08-07 10:27:21[COMPLETED] was removed from job service submissions.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1747556 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748273 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748273 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:167 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748273 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:168 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748273 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748289 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 733ms
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748320 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748336 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748351 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748383 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748960 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1748960 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896372610_483929548.tif
2013-08-07 10:46:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1749163 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897570817_807785909\546306A01_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:46:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1751612 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:46:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1751612 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:46:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897570817_807785909\546306A01_121101-OysterV9-MG-meth-HX3_532.xys...
2013-08-07 10:46:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1777742 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897570817_807785909\546306A01_121101-OysterV9-MG-meth-HX3_532.xys
2013-08-07 10:46:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1777742 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:46:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1778147 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897570817_807785909\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:46:26 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897570817_807785909\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:46:26 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783576 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T104645_532.xys
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783654 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783654 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783919 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783951 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1783951 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) X, Y and Signal Report Workflow 2013-08-07 10:27:22[COMPLETED] was removed from job service submissions.
2013-08-07 10:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784013 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:173 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:174 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784450 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 437ms
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784481 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784512 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784559 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784590 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784621 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784653 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784793 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784793 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896372610_483929548.tif
2013-08-07 10:46:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1784824 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897606494_473419214\546306A01_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:46:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1786369 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:46:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1786369 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:47:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1846039 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897606494_473419214\546306A01_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-07 10:47:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1846039 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:47:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1846429 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897606494_473419214\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:47:01 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897606494_473419214\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:47:01 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1879626 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T104821_532.pair
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880296 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880296 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:48:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880328 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880328 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-07 10:27:24[COMPLETED] was removed from job service submissions.
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880406 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880874 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880889 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880889 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1880905 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-07 10:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1881139 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:48:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1881357 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:48:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1881357 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:48:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1881810 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:48:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1894258 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:48:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1894290 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:48:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896372610_483929548.xys...
2013-08-07 10:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1906770 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1906770 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1906801 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1906817 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:48:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1911325 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:48:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1918158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1943477 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944054 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944085 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944101 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944101 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:179 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:180 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 63726ms
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944147 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944163 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944179 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:49:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1944210 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:49:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1974177 [SwingWorker-pool-5-thread-5] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:49:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1974177 [SwingWorker-pool-5-thread-5] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:50:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1985955 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 10:50:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1986002 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 10:50:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1986002 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1987422 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1987422 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1987609 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1987609 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-07 10:27:26[COMPLETED] was removed from job service submissions.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1987687 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:185 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:186 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988093 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 437ms
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988124 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988139 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988186 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988280 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:50:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988311 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:50:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988327 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:50:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988529 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:50:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988529 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896372610_483929548.tif
2013-08-07 10:50:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1988685 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897810340_1708062036\546306A01_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:50:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1990479 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:50:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1990479 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:50:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1991626 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Resized
2013-08-07 10:50:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 1991626 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Moved
2013-08-07 10:50:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2025525 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897810340_1708062036\546306A01_121101-OysterV9-MG-meth-HX3_532.ftr
2013-08-07 10:50:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2025525 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:50:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2025619 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897810340_1708062036\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:50:23 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375897810340_1708062036\546306A01_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:50:23 PDT 2013 border=0 ul_x=148.229 ul_y=140.883 ur_x=3005.455 ur_y=134.526 lr_x=3013.656 lr_y=3949.977 ll_x=156.294 ll_y=3956.281 qcscore=0.344 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2045961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T105107_532.ftr
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046039 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046039 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046289 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046320 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:51:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046320 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) Feature Report Workflow 2013-08-07 10:27:27[COMPLETED] was removed from job service submissions.
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046445 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046741 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046788 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046835 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2046881 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2047022 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2047084 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2047084 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:51:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2047209 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:51:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2059985 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:51:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2060032 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:51:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896232553_876407753.xys...
2013-08-07 10:51:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2072840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:51:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2072887 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:51:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2072949 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:51:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2073011 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:51:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2077645 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:51:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2084009 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107144 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107503 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107597 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107659 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:229 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107706 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 61308ms
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107768 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107768 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2107846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108189 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108392 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108439 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108486 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108564 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108611 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108611 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:52:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2108720 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:52:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2119016 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:52:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2119141 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:52:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896365309_497339705.xys...
2013-08-07 10:52:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2135006 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:52:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2135037 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:52:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2135100 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:52:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2135193 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:52:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2139608 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:52:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2146846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:53:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2168484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:53:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2168827 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:53:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2168920 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:53:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169279 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:236 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:234 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169357 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 61573ms
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169404 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169404 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169435 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:233 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169435 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169451 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:238 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169451 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169466 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:237 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169482 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169482 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:240 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169482 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2169576 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-07 10:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2172618 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:239 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2172664 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-07 10:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2172664 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173210 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-07 10:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173273 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: -0.1065
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173647 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173647 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:231 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173647 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173725 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2173788 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2174287 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-07 10:53:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2174287 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:235 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:53:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2174334 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-07 10:53:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2174334 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:53:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2174396 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:53:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2204332 [SwingWorker-pool-5-thread-6] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:53:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2204332 [SwingWorker-pool-5-thread-6] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:54:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2221204 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Resized
2013-08-07 10:54:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2221204 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Moved
2013-08-07 10:54:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2225541 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:54:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2225541 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:54:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2225587 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-07 10:54:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2225665 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181...................
2013-08-07 10:54:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371...................
2013-08-07 10:54:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460....
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489....
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546...
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633...................
2013-08-07 10:54:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891...................
2013-08-07 10:54:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383...................
2013-08-07 10:54:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696.
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744...................
2013-08-07 10:54:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409.......
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246...................
2013-08-07 10:54:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782...................
2013-08-07 10:54:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535...................
2013-08-07 10:54:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685...................
2013-08-07 10:54:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773..
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867...................
2013-08-07 10:54:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998...................
2013-08-07 10:54:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999...................
2013-08-07 10:54:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2245478 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:230 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:54:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2245540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-07 10:54:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2245540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-07 10:54:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2245649 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-07 10:54:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2245649 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:0
2013-08-07 10:54:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2251608 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:5959
2013-08-07 10:54:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2257318 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:11669
2013-08-07 10:54:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2257396 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-07 10:54:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2257396 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:54:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2257474 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-07 10:54:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2257490 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-07 10:54:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2262279 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:4805
2013-08-07 10:54:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2265243 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:7769
2013-08-07 10:54:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2265305 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-07 10:54:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2265321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:54:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2265383 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:55:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2314398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:55:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2314398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2314461 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-07 10:55:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2314539 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315568 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:232 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315631 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315631 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315678 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315693 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:15
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2315756 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:78
2013-08-07 10:55:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316317 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:639
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316364 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316364 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316411 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316926 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2316926 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317206 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317206 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317222 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317222 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5/Cy3) DNA Methylation Workflow 2013-08-07 10:27:57[COMPLETED] was removed from job service submissions.
2013-08-07 10:55:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317269 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:245 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:246 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317487 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 234ms
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317550 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317596 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317628 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2317659 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2318080 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2318080 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896365309_497339705.tif
2013-08-07 10:55:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2318142 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898139812_286700104\546306A03_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:55:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2321325 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:55:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2321340 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:55:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898139812_286700104\546306A03_121101-OysterV9-MG-meth-HX3_532.xys...
2013-08-07 10:56:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2345598 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898139812_286700104\546306A03_121101-OysterV9-MG-meth-HX3_532.xys
2013-08-07 10:56:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2345598 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:56:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2345879 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898139812_286700104\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:55:57 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898139812_286700104\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:55:57 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350403 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T105612_532.xys
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350481 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350481 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350622 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350622 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350637 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350637 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) X, Y and Signal Report Workflow 2013-08-07 10:27:57[COMPLETED] was removed from job service submissions.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2350684 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:251 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:252 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351043 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 375ms
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351058 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351058 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351074 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351074 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351090 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351105 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351199 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351199 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896365309_497339705.tif
2013-08-07 10:56:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2351214 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898172884_1861913802\546306A03_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 10:56:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2352806 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:56:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2352806 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:57:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2426906 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898172884_1861913802\546306A03_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-07 10:57:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2426906 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 10:57:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2427374 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898172884_1861913802\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:56:27 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898172884_1861913802\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 10:56:27 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2467715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T105809_532.pair
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2467825 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2467840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2467996 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2467996 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468012 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468012 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-07 10:27:58[COMPLETED] was removed from job service submissions.
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468059 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468215 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468230 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468246 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468262 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-07 10:58:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468308 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 10:58:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468340 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 10:58:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468340 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 10:58:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468418 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 10:58:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2468558 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.AnalysisPanel - time to load workflow:140
2013-08-07 10:58:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2470430 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.
2013-08-07 10:58:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2470492 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:15
2013-08-07 10:58:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2471428 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:936
2013-08-07 10:58:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2471616 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - time to getGenomicPaneData:1139
2013-08-07 10:58:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2471616 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get pane settings:1186
2013-08-07 10:58:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2471616 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get data:0
2013-08-07 10:58:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2471616 [SwingWorker-pool-5-thread-7] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to initialize pane data:2996
2013-08-07 10:58:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2473503 [AWT-EventQueue-0] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:983
2013-08-07 10:58:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2474439 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 10:58:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2474595 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 10:58:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2474751 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 10:58:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2475016 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.analysisworkflowgraphs.AnalysisWorkflowToGraphUtil - total time to layout graph:15ms
2013-08-07 10:58:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2475266 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$1 - time to initialize genomic view panels:3604
2013-08-07 10:58:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2475531 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 29 bytes: 812754
2013-08-07 10:58:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2475796 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 29 bytes: 812754
2013-08-07 10:58:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2476062 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2483160 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 10:58:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2483175 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 10:58:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896365309_497339705.xys...
2013-08-07 10:58:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2484673 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2484782 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2484907 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2485047 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2485172 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2486467 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2486592 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2486732 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2486888 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2487075 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:28,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2487216 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:29,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2487356 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:29,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2487512 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:32,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2490928 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:32,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2491084 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:32,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2491194 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493175 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 10:58:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493175 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 10:58:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493190 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 10:58:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493206 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493206 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 10:58:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493331 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2493861 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494002 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494142 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494282 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494407 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494532 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2494641 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 10:58:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2497527 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 10:58:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2502348 [AWT-EventQueue-0] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.
2013-08-07 10:58:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2504282 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2527651 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2527963 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2527994 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528025 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:257 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:258 dataclass:class java.lang.Long]] is being set.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528072 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528072 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 60029ms
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528103 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528103 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528150 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528181 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528244 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528275 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 10:59:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2528290 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2581518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2581549 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2581549 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582298 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582298 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582313 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:00:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582313 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-07 10:27:58[COMPLETED] was removed from job service submissions.
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582360 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:263 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:264 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582516 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 171ms
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582532 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582532 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582547 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582563 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582579 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:00:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2582594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:00:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2583421 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 11:00:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2583421 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896365309_497339705.tif
2013-08-07 11:00:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2583967 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898405606_1688737555\546306A03_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 11:00:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2590223 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:00:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2590223 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:01:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2640111 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898405606_1688737555\546306A03_121101-OysterV9-MG-meth-HX3_532.ftr
2013-08-07 11:01:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2640111 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 11:01:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2640626 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898405606_1688737555\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:00:27 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898405606_1688737555\546306A03_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:00:27 PDT 2013 border=0 ul_x=134.361 ul_y=133.568 ur_x=2991.769 ur_y=126.470 lr_x=3002.442 lr_y=3943.706 ll_x=145.130 ll_y=3950.477 qcscore=0.329 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 11:01:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653247 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T110114_532.ftr
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653371 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653371 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653793 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653793 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653808 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653808 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) Feature Report Workflow 2013-08-07 10:27:58[COMPLETED] was removed from job service submissions.
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2653964 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654167 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654214 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654276 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:01:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654323 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-07 11:01:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654495 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 11:01:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654604 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:01:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654604 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:01:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2654760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 11:01:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2667755 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 11:01:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2667848 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 11:01:29,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896369865_1639199465.xys...
2013-08-07 11:01:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2678331 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 11:01:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2678378 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 11:01:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2678425 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 11:01:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2678487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 11:01:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2682777 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 11:01:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2687905 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 11:02:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717025 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717374 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717488 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717554 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717629 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717629 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:314 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717629 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:312 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717630 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717641 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717641 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 63755ms
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717711 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:02:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2717815 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2718509 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2718561 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2718607 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2718668 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2719107 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2719153 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2719153 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:02:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2719300 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 11:02:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2732145 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 11:02:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2732243 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 11:02:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896235065_1513261685.xys...
2013-08-07 11:02:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2749710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 11:02:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2749752 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 11:02:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2749817 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 11:02:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2749884 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 11:02:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2755108 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 11:03:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2761302 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 11:03:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783107 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783643 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783775 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783820 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:307 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783870 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783873 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783873 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 66159ms
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783923 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783924 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783941 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:316 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783941 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783957 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:311 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783958 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783961 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:318 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783961 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783963 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:315 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2783963 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2784011 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-07 11:03:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2787087 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:317 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2787143 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-07 11:03:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2787143 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2787664 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2787739 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: -0.0069
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788116 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788117 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:309 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788117 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788173 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-07 11:03:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788238 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788742 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788743 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:313 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788789 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2788789 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2789017 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-07 11:03:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2789082 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460....
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489....
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546...
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579...................
2013-08-07 11:03:37,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888...................
2013-08-07 11:03:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380...................
2013-08-07 11:03:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696.
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409.......
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516...................
2013-08-07 11:03:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878...................
2013-08-07 11:03:41,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576...................
2013-08-07 11:03:42,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728...................
2013-08-07 11:03:43,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773..
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895...................
2013-08-07 11:03:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998...................
2013-08-07 11:03:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger, (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999...................
2013-08-07 11:03:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2805188 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:308 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:03:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2805262 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-07 11:03:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2805262 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2805343 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-07 11:03:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2805357 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:13
2013-08-07 11:03:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2807873 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:2529
2013-08-07 11:03:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2810647 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:5303
2013-08-07 11:03:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2810693 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-07 11:03:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2810693 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:03:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2810743 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 11:04:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2845936 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 11:04:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2845937 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:04:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2846011 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 11:04:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2873416 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 11:04:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2873417 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:04:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2873467 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-07 11:04:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2873481 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:14
2013-08-07 11:04:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2875657 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:2190
2013-08-07 11:04:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2876840 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:3373
2013-08-07 11:04:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2876893 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-07 11:04:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2876894 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:04:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2876944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-07 11:04:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2877017 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-07 11:04:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878018 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:310 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:04:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878064 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-07 11:04:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878064 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-07 11:04:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878121 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-07 11:04:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878135 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:14
2013-08-07 11:05:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878422 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:301
2013-08-07 11:05:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2878856 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:735
2013-08-07 11:05:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2879044 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-07 11:05:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2879044 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2879107 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2879692 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2879693 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880033 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880034 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880055 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5/Cy3) DNA Methylation Workflow 2013-08-07 10:27:59[COMPLETED] was removed from job service submissions.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880087 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880250 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880251 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:323 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880251 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:324 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880251 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880252 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880252 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 180ms
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880261 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880261 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting X, Y and Signal report
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880288 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880298 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:05:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880318 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:05:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880391 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 11:05:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880391 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896369865_1639199465.tif
2013-08-07 11:05:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2880416 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898702083_79214720\546306A02_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 11:05:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2881328 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:05:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2881328 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:05:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898702083_79214720\546306A02_121101-OysterV9-MG-meth-HX3_532.xys...
2013-08-07 11:05:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2903947 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898702083_79214720\546306A02_121101-OysterV9-MG-meth-HX3_532.xys
2013-08-07 11:05:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2903947 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 11:05:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2904143 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898702083_79214720\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:05:14 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898702083_79214720\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:05:14 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 11:05:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910122 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - XYS file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T110531_532.xys
2013-08-07 11:05:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910232 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - X, Y and Signal submitted
2013-08-07 11:05:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910232 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910403 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910403 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910449 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910449 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) X, Y and Signal Report Workflow 2013-08-07 10:28:00[COMPLETED] was removed from job service submissions.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910693 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:329 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:330 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910695 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910695 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 220ms
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910704 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910705 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910728 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910739 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910753 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2910779 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2911215 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2911216 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896369865_1639199465.tif
2013-08-07 11:05:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2911268 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898732933_1263124560\546306A02_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 11:05:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2912625 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:05:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2912625 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:06:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2966634 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898732933_1263124560\546306A02_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-07 11:06:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2966635 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 11:06:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2966764 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898732933_1263124560\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:05:46 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898732933_1263124560\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:05:46 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2991909 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T110653_532.pair
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992065 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992065 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992221 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992221 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992299 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:06:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992299 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-07 10:28:00[COMPLETED] was removed from job service submissions.
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992345 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992954 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2992985 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993001 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993016 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993063 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993094 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993094 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:06:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 2993141 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-07 11:07:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3007509 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-07 11:07:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3007555 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-07 11:07:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\temporary_working_files\temp_files\1375896369865_1639199465.xys...
2013-08-07 11:07:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3021876 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-07 11:07:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3021892 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-07 11:07:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3021892 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-07 11:07:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3021908 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-07 11:07:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3026182 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-07 11:07:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3031611 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051891 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051922 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051938 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:335 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:336 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051984 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3051984 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 59654ms
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052031 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052062 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052109 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:07:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3052140 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084058 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084074 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084074 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084245 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084245 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084308 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:08:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084308 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-07 10:28:01[COMPLETED] was removed from job service submissions.
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084370 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:341 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:342 dataclass:class java.lang.Long]] is being set.
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set. A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084760 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 406ms
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084776 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084776 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084791 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Feature report
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084822 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084838 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3084869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3085119 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray
2013-08-07 11:08:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3085119 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896369865_1639199465.tif
2013-08-07 11:08:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3085446 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898907116_638205363\546306A02_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-07 11:08:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3086788 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:08:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3086788 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:08:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3088644 [SwingWorker-pool-5-thread-8] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131106_1884151313.ncd
2013-08-07 11:08:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3088644 [SwingWorker-pool-5-thread-8] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf
2013-08-07 11:08:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3111116 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Resized
2013-08-07 11:08:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3111116 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.scan.FullScreenDualmagePanel$1 - Component Moved
2013-08-07 11:09:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3174172 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898907116_638205363\546306A02_121101-OysterV9-MG-meth-HX3_532.ftr
2013-08-07 11:09:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3174172 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-07 11:09:56,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3174530 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898907116_638205363\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:08:46 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA version=1.2.1 imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\tmp.1375898907116_638205363\546306A02_121101-OysterV9-MG-meth-HX3_532.tif designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896131278_656809541.ndf designname=1375896131278_656809541 designid=577051 date=Wed Aug 07 11:08:46 PDT 2013 border=0 ul_x=142.117 ul_y=137.831 ur_x=2999.202 ur_y=130.954 lr_x=3008.466 lr_y=3947.634 ll_x=151.231 ll_y=3953.838 qcscore=0.315 locallyaligned=no correctAstig=no Knots= auto=no company_name='Roche NimbleGen, Inc.' intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-07 11:10:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3223624 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - FEATURE file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T111045_532.ftr
2013-08-07 11:10:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3223920 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Feature submitted
2013-08-07 11:10:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3223920 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-07 11:10:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3225043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-07 11:10:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3225043 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-07 11:10:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3225168 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-07 11:10:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3225168 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) Feature Report Workflow 2013-08-07 10:28:02[COMPLETED] was removed from job service submissions.
2013-08-07 11:12:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3355990 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.AnalysisPanel - time to load workflow:109
2013-08-07 11:12:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3356848 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.
2013-08-07 11:12:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3356864 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:0
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3357441 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:577
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3357534 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - time to getGenomicPaneData:670
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3357534 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get pane settings:686
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3357534 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get data:0
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3357534 [SwingWorker-pool-5-thread-9] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to initialize pane data:1482
2013-08-07 11:12:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3358268 [AWT-EventQueue-0] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:562
2013-08-07 11:13:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3358564 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:13:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3358767 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:13:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3358907 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:13:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3359032 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.analysisworkflowgraphs.AnalysisWorkflowToGraphUtil - total time to layout graph:31ms
2013-08-07 11:13:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3359188 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$1 - time to initialize genomic view panels:1607
2013-08-07 11:13:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3397299 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3397439 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3402431 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3402665 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3402743 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3402884 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:44,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3403008 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:47,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3406082 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:47,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3406175 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:47,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3406175 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 62ms
2013-08-07 11:13:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3407033 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3407158 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3407158 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 94ms
2013-08-07 11:13:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3409233 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3409326 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:13:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3409326 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 62ms
2013-08-07 11:13:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3417828 [AWT-EventQueue-0] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.
2013-08-07 11:16:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3545873 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.AnalysisPanel - time to load workflow:265
2013-08-07 11:16:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3546794 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.
2013-08-07 11:16:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3546809 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:0
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3547340 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:531
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3547433 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - time to getGenomicPaneData:624
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3547433 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get pane settings:639
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3547433 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to get data:0
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3547433 [SwingWorker-pool-5-thread-10] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$GenomicPaneDataLoader - time to initialize pane data:1357
2013-08-07 11:16:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3548276 [AWT-EventQueue-0] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:687
2013-08-07 11:16:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3548572 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:16:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3548728 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:16:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3548869 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 0ms
2013-08-07 11:16:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3549071 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.analysisworkflowgraphs.AnalysisWorkflowToGraphUtil - total time to layout graph:15ms
2013-08-07 11:16:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3549212 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.mainpanel.analysis.GenomicDataViewLoader$1 - time to initialize genomic view panels:1732
2013-08-07 11:16:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3549383 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 29 bytes: 812754
2013-08-07 11:16:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3549571 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 29 bytes: 812754
2013-08-07 11:16:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3549773 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 23809 bytes: 788974
2013-08-07 11:16:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3556138 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 810550 bytes: 2233
2013-08-07 11:16:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3556169 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 140ms
2013-08-07 11:16:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3561037 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3561052 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:16:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3572986 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573017 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573142 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573158 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573173 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573361 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573376 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573470 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573563 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573579 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573610 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3573626 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 109ms
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3574702 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3574733 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3574811 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3574952 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3575030 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3575077 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3575108 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:36,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3575139 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3575139 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 172ms
2013-08-07 11:16:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584250 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584281 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:45,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584312 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584343 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584468 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584484 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584499 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584515 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584530 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 156ms
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584593 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584608 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584624 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:46,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3584640 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586371 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586387 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586402 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586418 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586465 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586480 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586496 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:48,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586512 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3586512 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 94ms
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3595778 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3595809 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3595856 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3595903 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3595996 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3596028 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3596074 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:57,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3596106 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3596106 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 188ms
2013-08-07 11:16:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3597588 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:16:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3597619 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:16:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3597634 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:16:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3597650 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3598446 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3598477 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3598524 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:00,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3598555 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600318 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600349 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600364 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600380 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600474 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600505 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600536 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600567 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600692 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600739 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600770 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600817 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600926 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3600957 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601004 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601051 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601176 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601222 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601254 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601285 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601425 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601456 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601472 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601503 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601628 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601659 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601675 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601706 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601846 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601878 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601924 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3601956 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602065 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602080 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602096 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602112 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602205 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602221 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602221 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602236 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602439 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602470 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602486 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3602502 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604108 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604124 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604124 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604140 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604249 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604264 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604280 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604296 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604374 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604374 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604389 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604405 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604483 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604483 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604498 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604514 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604592 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604592 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604608 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604623 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604748 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604795 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604826 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604873 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3604966 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605013 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605029 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605044 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605154 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605169 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605169 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605185 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605294 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605341 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605372 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605403 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605544 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605590 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605622 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605668 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605762 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605809 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605856 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605887 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605965 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3605980 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606012 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606012 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606121 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606136 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606152 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606168 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606246 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606277 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606292 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:07,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606324 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606417 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606433 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606448 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606464 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606558 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606558 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606573 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606589 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606667 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606682 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606698 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606714 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606807 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606807 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606823 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606838 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606948 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606963 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3606979 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607010 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607104 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607135 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607182 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607213 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607291 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:08,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607322 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607353 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607384 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607478 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607525 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607540 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607556 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607634 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607650 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607665 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607681 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607774 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607806 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607837 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607868 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607962 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3607993 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608024 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608055 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608164 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608180 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608211 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:09,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608258 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608352 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608367 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608383 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608398 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608492 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608523 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608539 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608586 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608726 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608773 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608804 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608835 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608960 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3608976 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609007 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609022 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609116 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609132 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609147 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609163 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609241 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609241 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609256 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:10,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609272 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609350 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609366 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609381 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3609397 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613016 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613047 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613094 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613141 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613203 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613234 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613281 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613312 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613312 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 171ms
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613390 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613406 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613422 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613437 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613468 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613484 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613500 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613515 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613593 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613609 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613624 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613640 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613640 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 109ms
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613702 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613734 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613765 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613780 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613874 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613890 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613905 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613921 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613968 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613983 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613983 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3613999 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614046 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614061 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614061 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614077 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614077 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614124 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614124 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614139 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614155 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614217 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614233 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614248 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614264 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614264 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:17:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614311 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614342 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614373 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614404 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614482 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614482 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614498 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614514 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614514 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614545 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614576 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614592 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614592 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614670 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614685 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614701 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614716 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614763 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614779 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614794 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614794 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614794 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 78ms
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614841 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614841 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614857 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614872 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614950 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3614997 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615028 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615060 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615138 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615169 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615200 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615231 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615231 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 171ms
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615340 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615356 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615403 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615418 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615496 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615528 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615559 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615590 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615684 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615715 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615746 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615762 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3615777 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 140ms
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3632812 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3632844 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3632890 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3632968 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3633000 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 11:17:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3633031 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 11:17:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 3633046 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.common.drawing.genomicdrawing.ui.SplitGenomicGraphPanel - SplitGenomicGraphPanel refreshed in 140ms
2013-08-07 12:48:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9071201 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 12:48:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9071232 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 12:48:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9071247 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 12:48:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9078283 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375896188530_1904476021.attr position: 811739 bytes: 1044
2013-08-07 12:48:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9078299 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897494720_1736319168.attr position: 2784876 bytes: 6132
2013-08-07 12:48:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9078299 [AWT-EventQueue-0] INFO com.nimblegen.common.pio.dataio.read.DataWithAttributesFileReader$AttributesByteBuffer - Buffering attributes file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\08072013\OysterArray\DEVA\data\filestore\2013\8\7\10\1375897518557_1933484064.attr position: 0 bytes: 0
2013-08-07 12:48:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker, 9081087 [AWT-EventQueue-0] DEBUG com.nimblegen.common.analysis.WorkflowGenomicVisualization - A WorkflowGenomicVisualization has been deserialized.