2013-08-27 08:30:18,DEBUG,com.nimblegen.common.config.impl.ApplicationLogConfiguration,  Application logging has been successfully configured
2013-08-27 08:30:18,DEBUG,com.nimblegen.deva.projectmanager.settings.Settings,  Settings successfully saved to Java properties.
2013-08-27 08:30:18,DEBUG,com.nimblegen.deva.projectmanager.ui.ProjectManagerMainPanel,  Running DbMigrate and then DEVA on directory: 'Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA'
2013-08-27 08:30:18,DEBUG,com.nimblegen.deva.projectmanager.settings.MemoryProbe,  Java Command Line: C:\Deva\jre\bin\java
2013-08-27 08:30:18,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe,  MemoryProbe has found the total physical memory to be 8189 megabytes.
2013-08-27 08:30:20,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe,  In 11 trials, MemoryProbe has found the "borderline" memory setting to be 7157 megabytes.
2013-08-27 08:30:20,DEBUG,com.nimblegen.deva.projectmanager.settings.MemoryProbe,  Finished determineBorderlineMemorySettingInMegabytes()
2013-08-27 08:30:20,INFO,com.nimblegen.deva.projectmanager.settings.MemoryProbe,  MemoryProbe has set the highest recommended memory setting to 7150 megabytes.
2013-08-27 08:30:20,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  CombinedLauncher starting.
2013-08-27 08:30:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  CombinedLauncher is in Jar mode.
2013-08-27 08:30:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Command: java -Duser.language=en -Duser.region=US -cp C:\Deva\DEVA.jar com.nimblegen.deva.dbmigrate.RunDBMigrate -D -v=h
2013-08-27 08:30:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Project directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA
2013-08-27 08:30:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Working directory: C:\Deva
2013-08-27 08:30:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  StreamWorker 457000839 starting.
2013-08-27 08:30:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  Error StreamLogger 420897145 starting.
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:20,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:20,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:20,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/C:/Deva/DEVA.jar!/logback.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:20,894 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@6bdab91 - URL [jar:file:/C:/Deva/DEVA.jar!/logback.xml] is not of type file
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,019 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,021 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,055 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen level set to DEBUG
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,055 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen.common.jobcontroller level set to ERROR
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,055 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - ROOT level set to ERROR
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,055 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:21,056 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:30:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>5</percentDone><description>Command line arguments retrieved.</description></startupProgressSignal>
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@2c766a24: startup date [Tue Aug 27 08:30:21 PDT 2013]; root of context hierarchy
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/deva/dbmigrate/DataSourceFactory_h2.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@e5d391d: defining beans [db_connection_driver_class_name,db_connection_protocol,db_vendor,database_name,db_directory,db_user_default_name,db_user_default_password,sql_create_role,sql_set_schema,sql_create_schema,sql_drop_role,sql_create_version,sql_insert_version]; root of factory hierarchy
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  654  [main] INFO  com.nimblegen.deva.dbmigrate.DataSourceFactory - Using: org.h2.Driver
2013-08-27 08:30:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>15</percentDone><description>MigrationFramework initialized.</description></startupProgressSignal>
2013-08-27 08:30:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  738  [main] DEBUG com.nimblegen.common.services.ServiceProvider - Starting H2 in EMBEDDED mode.
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@2d1e233: startup date [Tue Aug 27 08:30:21 PDT 2013]; root of context hierarchy
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services_h2_embedded.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/daos.xml]
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:21 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from URL [file:Z:/users/c/csather/TO_BE_REVIEWED_SCANS/OysterChick2/DEVA/config/sys_config/db/h2-embedded-datasource.xml]
2013-08-27 08:30:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:22 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-27 08:30:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@6da0d866: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,fileTokenFactory,fileTokenDao,organismFactory,organismDao,genomeSourceFactory,genomeSourceDao,genomeAssyFactory,genomeAssyDao,sampleFactory,sampleDao,arrayDesignFactory,arrayDesignDao,arrayResultFactory,arrayResultDao,sampleTrackingControlSetFactory,sampleTrackingControlSetDao,labeledSampleFactory,labeledSampleDao,slideDesignFactory,slideDesignDao,slideResultFactory,slideResultDao,arrayTiffFactory,arrayTiffDao,decodedNumberFactory,decodedNumberDao,analysisWorkflowFactory,analysisWorkflowDao,workflowDataFactory,workflowDataDao,monitoredFileFactory,monitoredFileDao,importedFileAssociationsDao,genomeAssemblySequenceFactory,genomeAssemblySequenceDao,settingFactory,settingDao,workflowTemplateFactory,workflowTemplateDao,visualizationFactory,visualizationDao,genomeDatasetDboFactory,genomeDatasetDao,valuedGenomeDatasetAttributesDao,genomeDatasetCacheDboFactory,genomeDatasetCacheDao,exportFactory,exportDao,containerGenomeDatasetDao,segmntStatsFactory,segmntStatsDao,designAnnotationFactory,designAnnotationDao,jobsRecoveryDao,activityStatusDao,qualityControlReportFactory,qualityControlReportDao,genomeDatasetPioService,slideService,analysisWorkflowService,workflowTransportService,workflowTemplateService,visualizationService,qualityControlReportService,snpHeterozygosityFrequencyService,genomeDatasetCacheService,fileMoverFactory,fileService,filePioService,genomeAssyService,genomeAssyPioService,applicationConfiguration,systemConfiguration,designAnnotationService,devaArchiveImportService,genomeAssemblySequenceService,sequenceStatsService,systemConfigurationService,dataWriterFactory,xysExporter,gffDataExporter,jobsRecoveryService,trackSettingsService,paneSettingsService,plotSettingsService,genomeAssemblyController,tiffImportMonitor,manualAlignmentController,tiffImportController,slidesTableController,genomeDatasetController,slideResultSearchController,arrayResultSearchController,exportService,jobStatusDetailController,propertyConfigurer,h2datasource,datasource,dialect,template]; root of factory hierarchy
2013-08-27 08:30:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:22 AM java.util.prefs.WindowsPreferences <init>
2013-08-27 08:30:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.
2013-08-27 08:30:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2120 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:32ms)
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2399 [main] DEBUG com.nimblegen.deva.common.jobservice.JobService - job service resource limit for ESTIMATED_MEMORY_IN_KB is set to 1524932.
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2445 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - deleting all files in store directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore].
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2451 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - 0 files and 0 directories successfully deleted in store directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore].
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>17</percentDone><description>Store folder deleted.</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2452 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFrameworkFacade - deleting all files in database directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\datastore].
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2458 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFrameworkFacade - 0 files and 0 directories successfully deleted in database directory[Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\datastore].
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>17</percentDone><description>Database deleted.</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2458 [main] DEBUG com.nimblegen.deva.dbmigrate.DataSourceFactory - jdbc:h2:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\datastore\rng_database
2013-08-27 08:30:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:23 AM org.springframework.jdbc.datasource.DriverManagerDataSource setDriverClassName
2013-08-27 08:30:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loaded JDBC driver: org.h2.Driver
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2707 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - Executing CREATE TABLE version_info ( id BIGINT AUTO_INCREMENT PRIMARY KEY, version INT NOT NULL, updated TIMESTAMP DEFAULT CURRENT TIMESTAMP );
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2717 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - Initialization is complete.
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>50</percentDone><description>Framework initialized</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2810 [main] DEBUG com.nimblegen.deva.dbmigrate.RunDBMigrate - Fired up a database Migrator.
2013-08-27 08:30:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2810 [main] INFO  com.nimblegen.deva.dbmigrate.RunDBMigrate - Current database version:	0
2013-08-27 08:30:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2810 [main] INFO  com.nimblegen.deva.dbmigrate.RunDBMigrate - Destination version:	10000
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3090 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationFactory - Found and created 39 new Migrations.
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>51</percentDone><description>Stage 1 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3098 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE filetoken ( id_filetoken BIGINT AUTO_INCREMENT PRIMARY KEY, path_relative_to_store_directory VARCHAR(512) NULL , file_name VARCHAR(128) NOT NULL UNIQUE , original_file_name VARCHAR(256) NOT NULL , num_references INTEGER NOT NULL , md5_value VARCHAR(128) UNIQUE NOT NULL , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3104 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1)
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>52</percentDone><description>Stage 2 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3108 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE organism ( id_organism BIGINT AUTO_INCREMENT PRIMARY KEY, ncbi_taxon_id INT NOT NULL , scientific_name VARCHAR(128) NOT NULL , common_name VARCHAR(128) , is_user_defined INT NOT NULL DEFAULT 0 , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3110 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_source ( id_genome_source BIGINT AUTO_INCREMENT PRIMARY KEY, name VARCHAR(64) NOT NULL , description VARCHAR(512), created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3125 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_assembly ( id_genome_assembly BIGINT AUTO_INCREMENT PRIMARY KEY, genome_assembly_name VARCHAR(32) , accession_identifier VARCHAR(132) , is_user_defined INT NOT NULL DEFAULT 0 , id_organism BIGINT NOT NULL , id_genome_source BIGINT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_gnmssy_rgn FOREIGN KEY (id_organism) REFERENCES organism (id_organism) , CONSTRAINT fk_gnmssy_gnmsrc FOREIGN KEY (id_genome_source) REFERENCES genome_source (id_genome_source) , CONSTRAINT unq_gnmssy_lbl UNIQUE (genome_assembly_name) )
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3127 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (2)
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>53</percentDone><description>Stage 3 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3130 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO organism ( ncbi_taxon_id , scientific_name , common_name ) VALUES ( 32644 , 'Unspecified' , 'Unspecified' ), ( 3702 , 'Arabidopsis thaliana' , 'Thale-cress'), ( 9913 , 'Bos taurus' , 'Domestic cow' ), ( 6239 , 'Caenorhabditis elegans' , 'Nematode' ), ( 7955 , 'Danio rerio' , 'Zebrafish' ), ( 7227 , 'Drosophila melanogaster' , 'Fruit fly' ), ( 9606 , 'Homo sapiens' , 'Human' ), ( 10090 , 'Mus musculus' , 'House mouse' ), ( 10116 , 'Rattus norvegicus' , 'Norway rat' ), ( 4932 , 'Saccharomyces cerevisiae' , 'Yeast' ), ( 9685 , 'Xenopus tropicalis' , 'Frog' ) , ( 9615 , 'Canis familiaris' , 'Dog' ), ( 9823 , 'Sus scrofa' , 'Pig' ), ( 9031 , 'Gallus gallus' , 'Chicken' ), ( 9796 , 'Equus caballus' , 'Horse' )
2013-08-27 08:30:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3131 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO genome_source ( name , description ) VALUES ( 'UCSC' , 'Genome Bioinformatics at the University of California at Santa Clara. Provides assembly releases of popular genomes.' ), ( 'GenBank' , 'GenBank is a resource for genomic information at the National Center for Bioinformatics (NIH).'), ( 'Flybase' , 'A project supported by a consortium of Drosophila researchers and computer scientists at Harvard University, the University of Cambridge (UK), and Indiana University.'), ( 'TAIR' , 'The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.' ), ( 'Unknown' , 'Unknown' ), ( 'Customer' , 'Customer supplied' )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3137 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO genome_assembly ( genome_assembly_name , id_organism , id_genome_source ) VALUES ( 'Unspecified' , 1 , 5 ) , ( 'TAIR9' , 2 , 4 ) , ( 'bosTau4' , 3 , 1 ) , ( 'ce6' , 4 , 1 ), ( 'ce4' , 4 , 1 ) , ( 'danRer6' , 5 , 1 ) , ( 'dm3' , 6 , 1 ) , ( 'hg19' , 7 , 1 ) , ( 'hg18' , 7 , 1 ) , ( 'hg17' , 7 , 1 ) , ( 'mm9' , 8 , 1 ) , ( 'mm8' , 8 , 1 ) , ( 'mm7' , 8 , 1 ) , ( 'rn4' , 9 , 1 ) , ( 'sacCer2' , 10 , 1 ) , ( 'xenTro2' , 11 , 1 ) , ( 'canFam2' , 12 , 1 ) , ( 'susScr2' , 13 , 1 ) , ( 'galGal3' , 14 , 1 ) , ( 'equCab2' , 15 , 1 )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3141 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_assembly AS SELECT ga.id_genome_assembly , genome_assembly_name , accession_identifier , ga.is_user_defined AS genome_assembly_is_user_defined , ga.created_at AS genome_assembly_created_at , gs.id_genome_source , gs.name AS genome_source_name , gs.description AS genome_source_description , org.id_organism , org.is_user_defined AS organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_assembly AS ga , genome_source AS gs , organism AS org WHERE ga.id_organism = org.id_organism AND ga.id_genome_source = gs.id_genome_source
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3143 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (3)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>54</percentDone><description>Stage 4 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3145 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset ( id_genome_dataset BIGINT AUTO_INCREMENT PRIMARY KEY , original_file_name VARCHAR(128) , data_type VARCHAR(128) NOT NULL , id_genome_assembly BIGINT REFERENCES genome_assembly , is_import SMALLINT NOT NULL DEFAULT 0 , is_annotation SMALLINT NOT NULL DEFAULT 0 , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3179 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset_container ( id_genome_dataset_container BIGINT AUTO_INCREMENT PRIMARY KEY , id_genome_dataset_parent BIGINT REFERENCES genome_dataset , container_name VARCHAR (128) , id_genome_dataset BIGINT REFERENCES genome_dataset )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3182 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE chromosome_data_file ( id_chromosome_data_file BIGINT AUTO_INCREMENT PRIMARY KEY , id_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , id_attributes_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , id_position_key_filetoken BIGINT NOT NULL REFERENCES filetoken (id_filetoken) , chromosome_name VARCHAR(64) NOT NULL , num_records BIGINT NOT NULL , min_value FLOAT , first_quartile FLOAT , median FLOAT , third_quartile FLOAT , max_value FLOAT , min_position BIGINT NOT NULL , max_position BIGINT NOT NULL , stored_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3195 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE chromosome_dataset ( id_chromosome_dataset BIGINT NOT NULL AUTO_INCREMENT PRIMARY KEY , id_genome_dataset BIGINT NOT NULL REFERENCES genome_dataset (id_genome_dataset) ON DELETE CASCADE , id_chromosome_data_file BIGINT NOT NULL UNIQUE REFERENCES chromosome_data_file (id_chromosome_data_file) , id_filetoken_lucene_anchor BIGINT REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3205 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_gds_ga AS SELECT id_genome_dataset , original_file_name AS gds_original_filename , data_type AS gds_data_type , is_import AS gds_is_import , stored_at AS gds_stored_at , is_annotation AS gds_is_annotation , vw_genome_assembly.id_genome_assembly , genome_assembly_name , accession_identifier , genome_assembly_is_user_defined , genome_assembly_created_at , id_genome_source , genome_source_description , genome_source_name , id_organism , organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_dataset INNER JOIN vw_genome_assembly ON genome_dataset.id_genome_assembly = vw_genome_assembly.id_genome_assembly
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3207 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_chromosome_dataset AS SELECT cds.id_chromosome_dataset , cds.id_genome_dataset , cds.id_chromosome_data_file , cds.id_filetoken_lucene_anchor , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id , data_file.id_chromosome_data_file AS data_file_id , data_file.chromosome_name , data_file.num_records AS data_file_num_records , data_file.min_value , data_file.first_quartile , data_file.median , data_file.third_quartile , data_file.max_value , data_file.min_position , data_file.max_position , data_file.num_records , data_file.id_filetoken AS data_filetoken_id , data_file.id_attributes_filetoken AS attributes_filetoken_id , data_file.id_position_key_filetoken AS position_key_filetoken_id FROM chromosome_dataset AS cds , chromosome_data_file AS data_file WHERE cds.id_chromosome_data_file = data_file.id_chromosome_data_file
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3215 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_dataset AS SELECT gds.id_genome_dataset , gds.gds_original_filename , gds.gds_data_type , gds.gds_is_import , gds.gds_is_annotation , gds.gds_stored_at , gds.id_genome_assembly , gds.genome_assembly_name , gds.accession_identifier , gds.genome_assembly_created_at , gds.genome_assembly_is_user_defined , gds.id_genome_source , gds.genome_source_description , gds.genome_source_name , gds.id_organism , gds.scientific_name , gds.common_name , gds.ncbi_taxon_id , gds.organism_is_user_defined , cds.id_chromosome_dataset , data_file.chromosome_name , data_file.id_chromosome_data_file AS data_file_id , data_file.id_filetoken AS data_filetoken_id , data_file.id_attributes_filetoken AS attributes_filetoken_id , data_file.id_position_key_filetoken AS position_key_filetoken_id , data_file.min_value , data_file.first_quartile , data_file.median , data_file.third_quartile , data_file.max_value , data_file.min_position , data_file.max_position , data_file.num_records , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id FROM vw_gds_ga as gds LEFT OUTER JOIN chromosome_dataset AS cds ON gds.id_genome_dataset = cds.id_genome_dataset LEFT OUTER JOIN chromosome_data_file AS data_file ON cds.id_chromosome_data_file = data_file.id_chromosome_data_file
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3216 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE valued_genome_dataset_attributes ( id_valued_genome_dataset_attributes BIGINT AUTO_INCREMENT PRIMARY KEY , attribute_name VARCHAR(128) NOT NULL , id_genome_dataset BIGINT NOT NULL)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3217 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (4)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>55</percentDone><description>Stage 5 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3218 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE monitored_file ( id_monitored_file BIGINT AUTO_INCREMENT PRIMARY KEY , created TIMESTAMP NOT NULL , found_at TIMESTAMP NOT NULL , file_path VARCHAR(512) NOT NULL , file_name VARCHAR(128) NOT NULL , file_size BIGINT NOT NULL)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3219 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE imported_file_associations ( id_imported_file_associations BIGINT AUTO_INCREMENT PRIMARY KEY , md5_value VARCHAR(128) NOT NULL , id_genome_dataset BIGINT REFERENCES genome_dataset )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3220 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (5)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>56</percentDone><description>Stage 6 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3222 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE workflow_visualization ( id_workflow_visualization BIGINT AUTO_INCREMENT PRIMARY KEY , visualization_name VARCHAR(100) UNIQUE , visualization_xml CLOB NOT NULL )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3224 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE workflow_template ( id_workflow_template BIGINT AUTO_INCREMENT PRIMARY KEY, experiment_type VARCHAR(64) NOT NULL, workflow_name VARCHAR(512) NOT NULL UNIQUE, workflow_xml CLOB NOT NULL, id_workflow_visualization BIGINT , status_type VARCHAR(64) NOT NULL  , active_type VARCHAR(64) NOT NULL  , CONSTRAINT fk_workflow_visualization FOREIGN KEY (id_workflow_visualization) REFERENCES workflow_visualization (id_workflow_visualization) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3226 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE rng_workflow ( id_workflow BIGINT AUTO_INCREMENT PRIMARY KEY, name VARCHAR(512) , description VARCHAR(256) , workflow CLOB , id_workflow_template BIGINT , dye_mapping VARCHAR(128) , is_complete SMALLINT NOT NULL , experiment_type VARCHAR(64) NOT NULL , array_name VARCHAR(256) , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_workflow_template FOREIGN KEY (id_workflow_template) REFERENCES workflow_template (id_workflow_template) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3228 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE slide_design ( id_slide_design BIGINT AUTO_INCREMENT PRIMARY KEY , marketing_format_name VARCHAR(128) , slide_barcode VARCHAR(128) NOT NULL , id_filetoken_ncd BIGINT , is_local_alignment_used SMALLINT NOT NULL  , is_old SMALLINT NOT NULL DEFAULT 0 , alignment_border_in_pixels SMALLINT NOT NULL , is_bursting_performed SMALLINT NOT NULL , feature_size_in_microns FLOAT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_filetoken_ncd FOREIGN KEY (id_filetoken_ncd) REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3233 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_design ( id_array_design BIGINT AUTO_INCREMENT PRIMARY KEY, well_name VARCHAR(128) NOT NULL , experiment_type VARCHAR(64) NOT NULL , id_filetoken_ndf BIGINT , id_filetoken_pos BIGINT , id_slide_design BIGINT NOT NULL , id_genome_assembly BIGINT NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_design FOREIGN KEY (id_slide_design) REFERENCES slide_design (id_slide_design) , CONSTRAINT fk_genome_assembly FOREIGN KEY (id_genome_assembly) REFERENCES genome_assembly (id_genome_assembly) , CONSTRAINT fk_filetoken_ndf FOREIGN KEY (id_filetoken_ndf) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_pos FOREIGN KEY (id_filetoken_pos) REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3249 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE slide_result ( id_slide_result BIGINT AUTO_INCREMENT PRIMARY KEY, slide_result_name VARCHAR(128), slide_scan_tag VARCHAR(128) , slide_result_description VARCHAR(128), id_filetoken_cy3tiff BIGINT , id_filetoken_cy5tiff BIGINT , id_filetoken_twochanneltiff BIGINT , id_slide_design BIGINT NOT NULL , scanned_date_cy3tiff TIMESTAMP  , scanned_date_cy5tiff TIMESTAMP , scanned_date_twochanneltiff TIMESTAMP , cy3_slide_status VARCHAR(24) , cy5_slide_status VARCHAR(24) , serialized_slide_result BLOB NOT NULL, created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_design1 FOREIGN KEY (id_slide_design) REFERENCES slide_design (id_slide_design) , CONSTRAINT fk_filetoken_cy3tiff1 FOREIGN KEY (id_filetoken_cy3tiff) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_cy5tiff1 FOREIGN KEY (id_filetoken_cy5tiff) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_filetoken_twochanneltiff1 FOREIGN KEY (id_filetoken_twochanneltiff) REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3254 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_result ( id_array_result BIGINT AUTO_INCREMENT PRIMARY KEY, array_result_name VARCHAR(128), array_result_description VARCHAR(128), dye_mapping VARCHAR(128) NOT NULL, is_analysis_disabled SMALLINT NOT NULL DEFAULT 0 , id_slide_result BIGINT NOT NULL , id_array_design BIGINT NOT NULL , id_default_workflow BIGINT , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_slide_result FOREIGN KEY (id_slide_result) REFERENCES slide_result (id_slide_result) , CONSTRAINT fk_array_design FOREIGN KEY (id_array_design) REFERENCES array_design (id_array_design) , CONSTRAINT fk_rng_workflow FOREIGN KEY (id_default_workflow) REFERENCES rng_workflow (id_workflow) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3261 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE array_tiff ( id_array_tiff BIGINT AUTO_INCREMENT PRIMARY KEY , id_array_tiff_filetoken BIGINT , id_thumbnail_filetoken BIGINT REFERENCES filetoken , id_thumbnail_upper_left_filetoken BIGINT , id_thumbnail_upper_right_filetoken BIGINT , id_thumbnail_lower_left_filetoken BIGINT , id_thumbnail_lower_right_filetoken BIGINT , id_alignment_filetoken BIGINT , precision_score FLOAT , alignment_status VARCHAR(64) , CONSTRAINT fk_at_af FOREIGN KEY (id_alignment_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft FOREIGN KEY (id_array_tiff_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ul FOREIGN KEY (id_thumbnail_upper_left_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ur FOREIGN KEY (id_thumbnail_upper_right_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_ll FOREIGN KEY (id_thumbnail_lower_left_filetoken) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_at_ft_lr FOREIGN KEY (id_thumbnail_lower_right_filetoken) REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3267 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE labeled_sample ( id_labeled_sample BIGINT AUTO_INCREMENT PRIMARY KEY, dye VARCHAR(16) , CHECK(dye in ('Cy3','Cy5')), sample_id VARCHAR(128) NOT NULL, description VARCHAR(128) NOT NULL, dna_amount VARCHAR(64) NOT NULL, tissue VARCHAR(64) NOT NULL, bursting_failure VARCHAR(64) NOT NULL, alignment_failure VARCHAR(64) NOT NULL, extraction_failure VARCHAR(64) NOT NULL, storing_failure VARCHAR(64) NOT NULL, id_organism BIGINT REFERENCES organism , id_filetoken_xys BIGINT  , id_array_result BIGINT NOT NULL , id_array_tiff BIGINT , id_genome_dataset BIGINT REFERENCES genome_dataset , is_manually_aligned SMALLINT DEFAULT 0 , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_filetoken_xys FOREIGN KEY (id_filetoken_xys) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_array_result FOREIGN KEY (id_array_result) REFERENCES array_result (id_array_result) , CONSTRAINT fk_array_tiff FOREIGN KEY (id_array_tiff) REFERENCES array_tiff (id_array_tiff) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3270 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE rng_workflow_data ( id_workflow_data BIGINT AUTO_INCREMENT PRIMARY KEY, id_workflow BIGINT , original_output_dockbinding CLOB NOT NULL , next_input_dockbinding CLOB NOT NULL , datatype VARCHAR(128) NOT NULL , id_genome_dataset BIGINT REFERENCES genome_dataset , id_labeled_sample BIGINT REFERENCES labeled_sample , id_array_tiff_during_analysis BIGINT REFERENCES array_tiff , CONSTRAINT fk_workflow FOREIGN KEY (id_workflow) REFERENCES rng_workflow (id_workflow) )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3271 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE setting ( id_setting BIGINT AUTO_INCREMENT PRIMARY KEY, setting_type VARCHAR(64) NOT NULL, setting_name VARCHAR(128) NOT NULL, setting_value CLOB NOT NULL)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3272 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (6)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>57</percentDone><description>Stage 7 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3274 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE file_export ( id_file_export BIGINT AUTO_INCREMENT PRIMARY KEY , filename VARCHAR(128) NOT NULL , filesize_in_kb BIGINT NOT NULL , absolute_path VARCHAR(512) NOT NULL , created_at TIMESTAMP NOT NULL )
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  3275 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (7)
2013-08-27 08:30:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>58</percentDone><description>Stage 8 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4198 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (8)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>59</percentDone><description>Stage 9 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4201 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_assembly_sequence ( id_genome_assembly_sequence BIGINT AUTO_INCREMENT PRIMARY KEY , id_filetoken_fasta BIGINT NOT NULL, chromosome VARCHAR(512) NOT NULL , id_genome_assembly BIGINT NOT NULL , CONSTRAINT fk_filetoken_genome_assembly_sequence FOREIGN KEY (id_filetoken_fasta) REFERENCES filetoken (id_filetoken) , CONSTRAINT fk_genome_assembly_genome_assembly_sequence FOREIGN KEY (id_genome_assembly) REFERENCES genome_assembly (id_genome_assembly) )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4203 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (9)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>60</percentDone><description>Stage 10 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4205 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE segmntstats ( id_segmntstats BIGINT AUTO_INCREMENT PRIMARY KEY, id_array_result BIGINT NOT NULL , id_workflow BIGINT NOT NULL , xshift DOUBLE NOT NULL , mad1dr DOUBLE NOT NULL , CONSTRAINT fk_workflow_segmntstats FOREIGN KEY (id_workflow) REFERENCES rng_workflow (id_workflow) , CONSTRAINT fk_array_result_segmentstats FOREIGN KEY (id_array_result) REFERENCES array_result (id_array_result) )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4206 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (10)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>61</percentDone><description>Stage 11 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4208 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE genome_dataset_for_design ( id_genome_dataset_for_design BIGINT AUTO_INCREMENT PRIMARY KEY , id_slide_design BIGINT NOT NULL REFERENCES slide_design( id_slide_design ) , id_genome_dataset BIGINT NOT NULL REFERENCES genome_dataset( id_genome_dataset ) )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4209 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (11)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>62</percentDone><description>Stage 12 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4210 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE submitted_jobs ( job_id BIGINT NOT NULL PRIMARY KEY, serialized_job_file_token_id BIGINT NOT NULL)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4211 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (12)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>63</percentDone><description>Stage 13 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4630 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD REQUIRED_INPUT_TYPE VARCHAR(64) NOT NULL default 'TEST_AND_REFERENCE'
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4631 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (13)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>64</percentDone><description>Stage 14 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4632 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE stc (id_stc BIGINT AUTO_INCREMENT PRIMARY KEY, id_stc_set BIGINT NOT NULL, stc BIGINT NOT NULL)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4688 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_result ADD expected_id_stc_set BIGINT
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4723 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_result ADD actual_id_stc_set BIGINT
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4726 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_stc AS SELECT DISTINCT id_stc_set,(SELECT GROUP_CONCAT(stc SEPARATOR ',') FROM stc WHERE id_stc_set=top.id_stc_set) AS stcs FROM stc AS top UNION SELECT DISTINCT expected_id_stc_set, '' AS stcs FROM array_result WHERE expected_id_stc_set NOT IN (SELECT DISTINCT ID_STC_SET FROM STC) UNION SELECT DISTINCT actual_id_stc_set, '' AS stcs FROM array_result WHERE actual_id_stc_set NOT IN (SELECT DISTINCT ID_STC_SET FROM STC) ORDER BY id_stc_set
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4727 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (14)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>65</percentDone><description>Stage 15 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4729 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (16)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>66</percentDone><description>Stage 16 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4731 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE decoded_number ( id_decoded_number BIGINT AUTO_INCREMENT PRIMARY KEY , id_array_tiff BIGINT NOT NULL , series_name VARCHAR(50)  NOT NULL , name VARCHAR(50)  NOT NULL , value VARCHAR(50)  NOT NULL , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_array_tiff_decoded_num FOREIGN KEY (id_array_tiff) REFERENCES array_tiff (id_array_tiff) , CONSTRAINT unq_id_array_tiff_name UNIQUE (id_array_tiff,name) )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4732 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (17)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>67</percentDone><description>Stage 17 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4780 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_tiff ADD COLUMN alignment_outcome VARCHAR(50)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4781 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: UPDATE array_tiff SET alignment_outcome = 'NONE'
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4784 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table array_tiff ALTER COLUMN alignment_outcome SET NOT NULL
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4785 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (18)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>68</percentDone><description>Stage 18 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4786 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE quality_control_metrics ( id_quality_control BIGINT AUTO_INCREMENT PRIMARY KEY , id_labeled_sample BIGINT NOT NULL , slope DOUBLE  , inter_quartile_density DOUBLE , noise DOUBLE , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4787 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (19)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>69</percentDone><description>Stage 19 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4789 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE activity_status ( id_activity_status BIGINT AUTO_INCREMENT PRIMARY KEY , activity_status_detail_filetoken BIGINT , description VARCHAR(512) , job_type VARCHAR(128) , status VARCHAR(128) , percent_complete DOUBLE , date_submitted TIMESTAMP , created_at TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT fk_activity_status_detail_filetoken FOREIGN KEY (activity_status_detail_filetoken) REFERENCES filetoken (id_filetoken) )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4790 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (21)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>70</percentDone><description>Stage 20 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4825 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_cy3tiff_checksum BIGINT
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4859 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_cy5tiff_checksum BIGINT
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4892 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD COLUMN id_filetoken_twochanneltiff_checksum BIGINT
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4894 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table slide_result add CONSTRAINT fk_filetoken_cy3tiff_chksum1 FOREIGN KEY (id_filetoken_cy3tiff_checksum) REFERENCES filetoken (id_filetoken)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4895 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD CONSTRAINT fk_filetoken_cy5tiff_chksum1 FOREIGN KEY ( id_filetoken_cy3tiff_checksum ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4896 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE slide_result ADD CONSTRAINT fk_filetoken_twochanneltiff_chksum1 FOREIGN KEY ( id_filetoken_twochanneltiff_checksum ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4897 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (22)
2013-08-27 08:30:25,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>71</percentDone><description>Stage 21 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5348 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN WORKFLOW_IDENTIFIER VARCHAR(512)
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5706 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN WORKFLOW_VERSION DOUBLE
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5707 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (25)
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>72</percentDone><description>Stage 22 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5711 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5802 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0026_insert_loh_alter_cgh_workflows - test name: LOH-SNP-WORKFLOW-TEST
2013-08-27 08:30:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5977 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0026_insert_loh_alter_cgh_workflows - reference name: LOH-SNP-WORKFLOW-TEST
2013-08-27 08:30:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  6347 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  6881 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7085 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7277 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7410 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7572 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7708 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7854 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  7864 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (26)
2013-08-27 08:30:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>73</percentDone><description>Stage 23 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8134 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (27)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>74</percentDone><description>Stage 24 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8196 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (28)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>75</percentDone><description>Stage 25 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8211 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0029_update_workflow_visualizations_for_versioning - Updating workflow visualization XML for visualization name 'DNA-METHYLATION-WORKFLOW'.
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8488 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_0029_update_workflow_visualizations_for_versioning - Updating workflow visualization XML for visualization name 'CHIP-CHIP-WORKFLOW'.
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8724 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (29)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>76</percentDone><description>Stage 26 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8725 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (30)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>77</percentDone><description>Stage 27 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8791 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_design ADD COLUMN id_filetoken_gc_statistics BIGINT
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8792 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE array_design ADD CONSTRAINT id_filetoken_gc_statistics FOREIGN KEY ( id_filetoken_gc_statistics ) REFERENCES FILETOKEN ( id_filetoken )
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8793 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (31)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>78</percentDone><description>Stage 28 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8795 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: select 1 from dual
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8796 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (32)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>79</percentDone><description>Stage 29 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8836 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP TABLE SUBMITTED_JOBS
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8839 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE SUBMITTED_JOBS ( UNIQUE_JOB_ID VARCHAR(100) PRIMARY KEY , SERIALIZED_JOB_FILE_TOKEN_ID BIGINT NOT NULL , ID_ACTIVITY_STATUS BIGINT , CREATED_AT TIMESTAMP NOT NULL DEFAULT current_timestamp , CONSTRAINT FK_SERIALIZED_JOB_FILE_TOKEN_ID FOREIGN KEY (SERIALIZED_JOB_FILE_TOKEN_ID) REFERENCES FILETOKEN (ID_FILETOKEN) , CONSTRAINT FK_ID_ACTIVITY_STATUS FOREIGN KEY (ID_ACTIVITY_STATUS) REFERENCES ACTIVITY_STATUS (ID_ACTIVITY_STATUS) )
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8840 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (34)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>80</percentDone><description>Stage 30 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8864 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (35)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>81</percentDone><description>Stage 31 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8865 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8973 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1200)
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>82</percentDone><description>Stage 32 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  8980 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  9037 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  9094 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  9218 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  9274 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1204)
2013-08-27 08:30:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>83</percentDone><description>Stage 33 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10254 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE workflow_template ADD COLUMN modified_outside_of_deva VARCHAR(64) default 'FALSE' not null
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10255 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1206)
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>84</percentDone><description>Stage 34 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10263 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10381 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10506 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10638 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10791 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  10924 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:31,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11056 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11291 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11395 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11498 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1208)
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>85</percentDone><description>Stage 35 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11499 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Genome dataset ids used by labeled samples: []
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11499 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Number of xys token id: 0
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11499 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Number of position key file token ids: 0
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11500 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Orphaned genome dataset ids: []
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11501 [main] DEBUG com.nimblegen.deva.dbmigrate.rng.M_1210_remove_unused_genome_data - Orphaned xys file token ids: []
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11503 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1210)
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>86</percentDone><description>Stage 36 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11503 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample drop constraint FK_FILETOKEN_XYS;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11585 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column id_filetoken_xys;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11656 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column storing_failure;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11724 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column extraction_failure;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11726 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample ALTER COLUMN bursting_failure  RENAME TO bursting_status;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11795 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER table array_tiff DROP COLUMN alignment_status
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11796 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE labeled_sample ALTER COLUMN alignment_failure  RENAME TO alignment_status;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11796 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop constraint CONSTRAINT_16724;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11859 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: alter table labeled_sample drop column id_genome_dataset;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11861 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1212)
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>87</percentDone><description>Stage 37 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11862 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_chromosome_dataset IF EXISTS;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11862 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_gds_ga IF EXISTS;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11862 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: DROP VIEW vw_genome_dataset IF EXISTS;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11863 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE CHROMOSOME_DATASET RENAME TO CHROMOSOME_DATASET_OLD;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11866 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE CHROMOSOME_DATASET ( ID_CHROMOSOME_DATASET bigint AUTO_INCREMENT PRIMARY KEY , ID_FILETOKEN bigint DEFAULT NULL, ID_ATTRIBUTES_FILETOKEN bigint DEFAULT NULL, CHROMOSOME_NAME varchar(64) NOT NULL, NUM_RECORDS bigint NOT NULL, MIN_VALUE FLOAT, FIRST_QUARTILE FLOAT, MEDIAN FLOAT, THIRD_QUARTILE FLOAT, MAX_VALUE FLOAT, MIN_POSITION bigint NOT NULL, MAX_POSITION bigint NOT NULL, STORED_AT timestamp DEFAULT CURRENT_TIMESTAMP() NOT NULL, RECORD_START_INDEX BIGINT NOT NULL DEFAULT 0, ID_GENOME_DATASET BIGINT NOT NULL, ID_FILETOKEN_LUCENE_ANCHOR  BIGINT, CONSTRAINT FK_ID_FILETOKEN FOREIGN KEY (ID_FILETOKEN) REFERENCES FILETOKEN (ID_FILETOKEN), CONSTRAINT FK_ID_ATTRIBUTES_FILETOKEN FOREIGN KEY (ID_ATTRIBUTES_FILETOKEN) REFERENCES FILETOKEN (ID_FILETOKEN), CONSTRAINT FK_ID_GENOME_DATASET FOREIGN KEY (ID_GENOME_DATASET) REFERENCES GENOME_DATASET (ID_GENOME_DATASET), );
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11867 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: INSERT INTO CHROMOSOME_DATASET ( ID_CHROMOSOME_DATASET,ID_FILETOKEN,ID_ATTRIBUTES_FILETOKEN, CHROMOSOME_NAME,NUM_RECORDS,MIN_VALUE, FIRST_QUARTILE,MEDIAN,THIRD_QUARTILE, MAX_VALUE,MIN_POSITION,MAX_POSITION, STORED_AT,ID_GENOME_DATASET,ID_FILETOKEN_LUCENE_ANCHOR) SELECT cdf.ID_CHROMOSOME_DATA_FILE,cdf.ID_FILETOKEN,cdf.ID_ATTRIBUTES_FILETOKEN, CHROMOSOME_NAME,NUM_RECORDS,MIN_VALUE, FIRST_QUARTILE,MEDIAN,THIRD_QUARTILE, MAX_VALUE,MIN_POSITION,MAX_POSITION, STORED_AT, cd.ID_GENOME_DATASET,cd.ID_FILETOKEN_LUCENE_ANCHOR FROM chromosome_data_file cdf, CHROMOSOME_DATASET_OLD cd WHERE cdf.id_chromosome_data_file=cd.id_chromosome_data_file;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11924 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: drop table CHROMOSOME_DATASET_OLD;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  11981 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: drop table chromosome_data_file;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12045 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_lucene_anchor BIGINT NULL DEFAULT NULL;
2013-08-27 08:30:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12110 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_data BIGINT DEFAULT NULL;
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12174 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: ALTER TABLE genome_dataset ADD id_filetoken_attributes BIGINT DEFAULT NULL;
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12175 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_chromosome_dataset AS SELECT cds.id_chromosome_dataset , cds.id_genome_dataset , cds.id_filetoken_lucene_anchor , cds.id_filetoken_lucene_anchor AS lucene_anchor_ft_id , cds.chromosome_name , cds.num_records AS data_file_num_records , cds.min_value , cds.first_quartile , cds.median , cds.third_quartile , cds.max_value , cds.min_position , cds.max_position , cds.record_start_index , cds.num_records , cds.id_filetoken AS data_filetoken_id , cds.id_attributes_filetoken AS attributes_filetoken_id FROM chromosome_dataset AS cds
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12182 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_gds_ga AS SELECT id_genome_dataset , original_file_name AS gds_original_filename , data_type AS gds_data_type , is_import AS gds_is_import , stored_at AS gds_stored_at , is_annotation AS gds_is_annotation , id_filetoken_lucene_anchor AS genome_dataset_lucene_anchor_ft_id , id_filetoken_data AS genome_dataset_data_ft_id , id_filetoken_attributes AS genome_dataset_attributes_ft_id , vw_genome_assembly.id_genome_assembly , genome_assembly_name , accession_identifier , genome_assembly_is_user_defined , genome_assembly_created_at , id_genome_source , genome_source_description , genome_source_name , id_organism , organism_is_user_defined , scientific_name , common_name , ncbi_taxon_id FROM genome_dataset INNER JOIN vw_genome_assembly ON genome_dataset.id_genome_assembly = vw_genome_assembly.id_genome_assembly
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12188 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE VIEW vw_genome_dataset AS SELECT gds.id_genome_dataset , gds.gds_original_filename , gds.gds_data_type , gds.gds_is_import , gds.gds_is_annotation , gds.gds_stored_at , gds.id_genome_assembly , gds.genome_assembly_name , gds.accession_identifier , gds.genome_assembly_created_at , gds.genome_assembly_is_user_defined , gds.id_genome_source , gds.genome_source_description , gds.genome_source_name , gds.id_organism , gds.scientific_name , gds.common_name , gds.ncbi_taxon_id , gds.organism_is_user_defined , cds.id_chromosome_dataset , cds.chromosome_name , coalesce(cds.id_filetoken, gds.genome_dataset_data_ft_id) AS data_filetoken_id , coalesce(cds.id_attributes_filetoken, gds.genome_dataset_attributes_ft_id) AS attributes_filetoken_id , cds.min_value , cds.first_quartile , cds.median , cds.third_quartile , cds.max_value , cds.min_position , cds.max_position , cds.record_start_index , cds.num_records , cds.id_filetoken_lucene_anchor AS chromosome_dataset_lucene_anchor_ft_id , gds.genome_dataset_lucene_anchor_ft_id AS genome_dataset_lucene_anchor_ft_id , gds.genome_dataset_data_ft_id , gds.genome_dataset_attributes_ft_id FROM vw_gds_ga as gds LEFT OUTER JOIN chromosome_dataset AS cds ON gds.id_genome_dataset = cds.id_genome_dataset
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12189 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1218)
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>88</percentDone><description>Stage 38 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12191 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE TABLE GENOME_DATASET_CACHE ( ID_GENOME_DATASET_CACHE bigint AUTO_INCREMENT  PRIMARY KEY NOT NULL, CACHE_KEY bigint NOT NULL, ID_GENOME_DATASET bigint, CREATED_AT timestamp DEFAULT CURRENT_TIMESTAMP() NOT NULL, CONSTRAINT FK_GDS_CACHE FOREIGN KEY (ID_GENOME_DATASET) REFERENCES GENOME_DATASET(ID_GENOME_DATASET) ON DELETE CASCADE );
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12192 [main] DEBUG com.nimblegen.deva.dbmigrate.Migration - QUERY: CREATE UNIQUE INDEX GDS_CACHE_IDX01 ON GENOME_DATASET_CACHE(CACHE_KEY, ID_GENOME_DATASET);
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12193 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1225)
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>90</percentDone><description>Stage 39 of 39 done</description></startupProgressSignal>
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12199 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12293 [main] DEBUG com.nimblegen.common.util.versionidentifier.VersionIdentifierUtil - convertVersionIdentifierToDouble for '1.2.1' returning 1.21
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12398 [main] DEBUG com.nimblegen.deva.dbmigrate.MigrationWorker - QUERY (rng): INSERT INTO version_info ( version ) VALUES (1226)
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:33 AM com.nimblegen.deva.dbmigrate.Migrator doMigrations
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Updated to version 1226
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12430 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:31ms)
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12452 [main] DEBUG com.nimblegen.deva.common.configuration.DevaConfigurationUtil - A version.properties file has been created with project.type=DEVA and project.version=1.2.1
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Finished driving progress bar.
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Removed an expired listener.
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Progress bar being left intact for further processing.
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>100</percentDone><description>Database installed</description></startupProgressSignal>
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  12452 [main] INFO  com.nimblegen.deva.dbmigrate.RunDBMigrate - runDbMigrate completed.
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  Error StreamLogger 420897145 ending.
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  StreamWorker 457000839 ending.
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  DBMigrate ran successfully.
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  DBMigrate is finished. Now launching DEVA...
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Command: java -Xms7150m -Xmx7150m -Dsun.java2d.opengl=false -Dsun.java2d.nodraw=false -Dsun.java2d.d3d=false -Duser.language=en -Duser.region=US -cp C:\Deva\DEVA.jar com.nimblegen.deva.app.RunDevaApp 
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Project directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA
2013-08-27 08:30:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  Working directory: C:\Deva
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.CombinedLauncher,  CombinedLauncher ending.
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  Error StreamLogger 366384346 starting.
2013-08-27 08:30:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  StreamWorker 986087273 starting.
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:33,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:33,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:33,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/C:/Deva/DEVA.jar!/logback.xml]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:33,919 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@4c5e176f - URL [jar:file:/C:/Deva/DEVA.jar!/logback.xml] is not of type file
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,086 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,089 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,119 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen level set to DEBUG
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,119 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - com.nimblegen.common.jobcontroller level set to ERROR
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,119 |-INFO in ch.qos.logback.classic.joran.action.LevelAction - ROOT level set to ERROR
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,120 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  08:30:34,121 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:30:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  312  [main] DEBUG com.nimblegen.common.services.ServiceProvider - Starting H2 in EMBEDDED mode.
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:34 AM org.springframework.context.support.AbstractApplicationContext prepareRefresh
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@72e6f7d2: startup date [Tue Aug 27 08:30:34 PDT 2013]; root of context hierarchy
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:34 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services_h2_embedded.xml]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:34 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/services.xml]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:34 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from class path resource [com/nimblegen/common/spring/daos.xml]
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:34 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
2013-08-27 08:30:34,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Loading XML bean definitions from URL [file:Z:/users/c/csather/TO_BE_REVIEWED_SCANS/OysterChick2/DEVA/config/sys_config/db/h2-embedded-datasource.xml]
2013-08-27 08:30:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:35 AM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons
2013-08-27 08:30:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@46edf730: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,fileTokenFactory,fileTokenDao,organismFactory,organismDao,genomeSourceFactory,genomeSourceDao,genomeAssyFactory,genomeAssyDao,sampleFactory,sampleDao,arrayDesignFactory,arrayDesignDao,arrayResultFactory,arrayResultDao,sampleTrackingControlSetFactory,sampleTrackingControlSetDao,labeledSampleFactory,labeledSampleDao,slideDesignFactory,slideDesignDao,slideResultFactory,slideResultDao,arrayTiffFactory,arrayTiffDao,decodedNumberFactory,decodedNumberDao,analysisWorkflowFactory,analysisWorkflowDao,workflowDataFactory,workflowDataDao,monitoredFileFactory,monitoredFileDao,importedFileAssociationsDao,genomeAssemblySequenceFactory,genomeAssemblySequenceDao,settingFactory,settingDao,workflowTemplateFactory,workflowTemplateDao,visualizationFactory,visualizationDao,genomeDatasetDboFactory,genomeDatasetDao,valuedGenomeDatasetAttributesDao,genomeDatasetCacheDboFactory,genomeDatasetCacheDao,exportFactory,exportDao,containerGenomeDatasetDao,segmntStatsFactory,segmntStatsDao,designAnnotationFactory,designAnnotationDao,jobsRecoveryDao,activityStatusDao,qualityControlReportFactory,qualityControlReportDao,genomeDatasetPioService,slideService,analysisWorkflowService,workflowTransportService,workflowTemplateService,visualizationService,qualityControlReportService,snpHeterozygosityFrequencyService,genomeDatasetCacheService,fileMoverFactory,fileService,filePioService,genomeAssyService,genomeAssyPioService,applicationConfiguration,systemConfiguration,designAnnotationService,devaArchiveImportService,genomeAssemblySequenceService,sequenceStatsService,systemConfigurationService,dataWriterFactory,xysExporter,gffDataExporter,jobsRecoveryService,trackSettingsService,paneSettingsService,plotSettingsService,genomeAssemblyController,tiffImportMonitor,manualAlignmentController,tiffImportController,slidesTableController,genomeDatasetController,slideResultSearchController,arrayResultSearchController,exportService,jobStatusDetailController,propertyConfigurer,h2datasource,datasource,dialect,template]; root of factory hierarchy
2013-08-27 08:30:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:35 AM java.util.prefs.WindowsPreferences <init>
2013-08-27 08:30:35,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.
2013-08-27 08:30:35,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1980 [main] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:34ms)
2013-08-27 08:30:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2246 [main] DEBUG com.nimblegen.deva.common.jobservice.JobService - job service resource limit for ESTIMATED_MEMORY_IN_KB is set to 6800973.
2013-08-27 08:30:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>10</percentDone><description>Startup has begun</description></startupProgressSignal>
2013-08-27 08:30:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>25</percentDone><description>Fonts are loaded</description></startupProgressSignal>
2013-08-27 08:30:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>55</percentDone><description>SlideMainTabPanel initialized</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>60</percentDone><description>TemplateTabPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>70</percentDone><description>AnalysisPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>75</percentDone><description>AnnotationPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>80</percentDone><description>ExternalDataPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>85</percentDone><description>ExportPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>95</percentDone><description>JobsPanel finished</description></startupProgressSignal>
2013-08-27 08:30:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4800 [AWT-EventQueue-0] INFO  com.nimblegen.common.app.guicomponents.AppMainFrame - Roche NimbleGen, Inc. DEVA 1.2.1 2012-0426-1812-3714
2013-08-27 08:30:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  4818 [AWT-EventQueue-0] DEBUG com.nimblegen.common.app.guicomponents.AppMainFrame - frame size from persistence is maximized:true width:1024.0 height:768.0
2013-08-27 08:30:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>97</percentDone><description>MainFrame is finished</description></startupProgressSignal>
2013-08-27 08:30:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:39 AM org.jdesktop.application.LocalStorage getId
2013-08-27 08:30:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) WARNING: unspecified resource Application.id using RunDevaApp
2013-08-27 08:30:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Aug 27, 2013 8:30:39 AM org.jdesktop.application.LocalStorage getId
2013-08-27 08:30:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) WARNING: unspecified resource Application.vendorId using UnknownApplicationVendor
2013-08-27 08:30:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Finished driving progress bar.
2013-08-27 08:30:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Removed an expired listener.
2013-08-27 08:30:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Closing progress bar.
2013-08-27 08:30:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  <startupProgressSignal><percentDone>100</percentDone><description>Startup complete</description></startupProgressSignal>
2013-08-27 08:30:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  5426 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.RunDevaApp$1 - Project upgrade argument has been set to: false
2013-08-27 08:33:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  155644 [AWT-EventQueue-0] DEBUG com.nimblegen.deva.app.guicomponents.dialog.ManualDesignArchiveAndTiffImportDialog - creating design import worker in event handler for DESIGN ONLY.
2013-08-27 08:33:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  155651 [SwingWorker-pool-5-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - new Attempting slide import, barcode = 546306.
2013-08-27 08:33:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  156317 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing NCD file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth_HX3.ncd
2013-08-27 08:33:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  156450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing NDF file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.ndf
2013-08-27 08:33:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  156606 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Importing POS file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.pos
2013-08-27 08:33:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  176985 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ControlProbeExtractor - Non-experimental probes extracted.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178171 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - Creating new slide result.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178184 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 1)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178189 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 2)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178196 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 3)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178198 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 4)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178203 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 5)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178206 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - saving new STC set (STC set id  = 6)
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178617 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing design for slide barcode 546306[COMPLETED] was removed from submitted tasks.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178625 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178639 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing design for slide barcode 546306[COMPLETED] was removed from job service submissions.
2013-08-27 08:33:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  178653 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.GffFileImporter - Importing GFF file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.gff
2013-08-27 08:33:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  179140 [pool-1-thread-1] INFO  com.nimblegen.common.services.infrastructure.GffFileImporter - Lines imported: 28027 from file: Z:\NimbleScanFiles\121101_OysterV9_MG_meth.gff
2013-08-27 08:33:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  179232 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:90
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180284 [Directory Monitor] DEBUG com.nimblegen.common.services.controllers.TiffImportController - Starting import of TIFF file:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180299 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.controllers.TiffImportController$TiffImporter$1 - Importing TIFF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180301 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - Did not find an existing result that matches barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3 trying to find a placeholder slide result
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180314 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found a placeholder slide result for barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180377 [Directory Monitor] DEBUG com.nimblegen.common.services.controllers.TiffImportController - Starting import of TIFF file:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-27 08:33:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  180388 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.controllers.TiffImportController$TiffImporter$1 - Importing TIFF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-27 08:33:36,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  182752 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:3610
2013-08-27 08:33:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  184321 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:5179
2013-08-27 08:33:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  184389 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.FileImportTask - Associating annotation dataset id = {1} with slide design {RngSlideDesign[slide barcode: 546306, marketing format name: 3x720K]}.
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  185977 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.GenomeDatasetDao - time to GenomeDatasetDao.findById:1587
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  185982 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.DesignAnnotationDboFactory - INSERT INTO genome_dataset_for_design ( id_slide_design , id_genome_dataset ) VALUES ( ?, ? ) 0
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  185983 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.FileImportTask - Associating annotation dataset id = {1} with md5sum{699ad175b89c25e105912dcf28a5083e}.
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  186093 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing Annotation from [121101_OysterV9_MG_meth.gff][COMPLETED] was removed from submitted tasks.
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  186095 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  186115 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:33:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  186115 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Importing Annotation from [121101_OysterV9_MG_meth.gff][COMPLETED] was removed from job service submissions.
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187157 [SwingWorker-pool-5-thread-3] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [EMPTY] to [IMAGE_FOUND].
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187660 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found 1 existing slide results that match barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187674 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - Found an existing result that matches barcode: 546306 and scan tag: 121101-OysterV9-MG-meth-HX3 that has no image for dye: 532
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187818 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing slide for barcode: 546306 dye: Cy5.
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187833 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - No NDF provided. Bursting does not require NDF file.  Using NCD as NDF file.
2013-08-27 08:33:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  187842 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:33:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  192147 [SwingWorker-pool-5-thread-4] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [EMPTY] to [IMAGE_FOUND].
2013-08-27 08:33:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617617797A03_194036203.tif
2013-08-27 08:33:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Error: Could not load mediaLib accelerator wrapper classes. Continuing in pure Java mode.
2013-08-27 08:33:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Occurs in: com.sun.media.jai.mlib.MediaLibAccessor
2013-08-27 08:33:50,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) com.sun.media.jai.mlib.MediaLibLoadException
2013-08-27 08:33:53,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617617797A02_194036203.tif
2013-08-27 08:33:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  201118 [AWT-EventQueue-0] DEBUG com.nimblegen.common.services.model.impl.SlideService - updating existing STC set (STC set id  = 1)
2013-08-27 08:33:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  201120 [AWT-EventQueue-0] DEBUG com.nimblegen.common.services.model.impl.SlideService - updating existing STC set (STC set id  = 2)
2013-08-27 08:33:56,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617617797A01_194036203.tif
2013-08-27 08:34:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  206677 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-27 08:34:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  208018 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  209597 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [IMAGE_FOUND] to [BURSTED].
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  209728 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  209853 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done bursting slide into array image(s) for barcode: 546306 dye: Cy5
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  209857 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:burst slide tiff[546306] dye[Cy5].[COMPLETED] was removed from submitted tasks.
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  210047 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A03 dye:Cy5.
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  210061 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:34:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  210061 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:34:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:34:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:34:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:34:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:34:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:34:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:34:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:34:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  224026 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:34:27,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  233810 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A03:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-27 08:34:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  233919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:34:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234028 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>1 name=>DESIGN_ID value=>577051
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>2 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>3 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>4 name=>SAMPLE_TRACKING value=>1,9,17
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>5 name=>control:sample_tracking:A_A01 value=>1
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>6 name=>control:sample_tracking:B_A01 value=>1,9,17
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>7 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>8 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>9 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>10 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>11 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234715 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>12 name=>CHIP_ID value=>546306
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234730 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>13 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234730 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>1 id=>14 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:34:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  234886 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  235588 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[6] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617639615_540357186.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617657931_720998780.properties
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  235698 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA03 dye:Cy5
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  235869 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  235869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:6.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  235994 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A02 dye:Cy5.
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  236025 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:34:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  236025 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:34:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:34:40,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:34:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  248661 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:34:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  258645 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A02:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-27 08:34:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  258754 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:34:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  258879 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>15 name=>DESIGN_ID value=>577051
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>16 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>17 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>18 name=>SAMPLE_TRACKING value=>17
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>19 name=>control:sample_tracking:A_A01 value=>None
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>20 name=>control:sample_tracking:B_A01 value=>17
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>21 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>22 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>23 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>24 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>25 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>26 name=>CHIP_ID value=>546306
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>27 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259425 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>2 id=>28 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259581 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[2] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617640896_555842635.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617682565_925634329.properties
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259815 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA02 dye:Cy5
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259987 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:34:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  259987 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:2.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  260268 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[6], but stopped because control alignment is not set.
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  260268 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[6], but stopped because control alignment is not set.
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  260845 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  260970 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A01 dye:Cy5.
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  261001 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:34:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  261001 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:35:04,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:35:05,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:35:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  272701 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:35:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283044 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A01:Cy5. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283153 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283309 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>29 name=>DESIGN_ID value=>577051
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>30 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>31 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>32 name=>SAMPLE_TRACKING value=>1
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>33 name=>control:sample_tracking:A_A01 value=>1
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>34 name=>control:sample_tracking:B_A01 value=>None
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>35 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>36 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283746 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>37 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283761 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>38 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283761 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>39 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283761 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>40 name=>CHIP_ID value=>546306
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283761 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>41 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283761 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>3 id=>42 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  283917 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [BURSTED] to [COMPLETE].
2013-08-27 08:35:17,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284026 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[4] dye[Cy5]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617642375_654404885.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617706589_1135267710.properties
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284151 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA01 dye:Cy5
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284307 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy5] was saved from [COMPLETE] to [COMPLETE].
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284307 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:4.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284526 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[2], but stopped because experiment alignment is not set.
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  284526 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[2], but stopped because experiment alignment is not set.
2013-08-27 08:35:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285040 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285243 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Analysis attempted for labeled sample id[4], but stopped because control alignment is not set.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285243 [pool-1-thread-1] DEBUG com.nimblegen.common.jobservice.jobs.RunDefaultAnalysisWorkflowForLabeledSampleJob - Analysis attempted for labeled sample id[4], but stopped because control alignment is not set.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285789 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285789 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285820 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  285820 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:Importing Image for slide barcode 546306 dye:Cy5[COMPLETED] was removed from job service submissions.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  286054 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing slide for barcode: 546306 dye: Cy3.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  286070 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - No NDF provided. Bursting does not require NDF file.  Using NCD as NDF file.
2013-08-27 08:35:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  286070 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:35:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617623283A03_121183407.tif
2013-08-27 08:35:30,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617623283A02_121183407.tif
2013-08-27 08:35:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617623283A01_121183407.tif
2013-08-27 08:35:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  304384 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-27 08:35:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  305679 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [IMAGE_FOUND].
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307239 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [IMAGE_FOUND] to [BURSTED].
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307380 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307504 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done bursting slide into array image(s) for barcode: 546306 dye: Cy3
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307504 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:burst slide tiff[546306] dye[Cy3].[COMPLETED] was removed from submitted tasks.
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307645 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A01 dye:Cy3.
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307645 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:35:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  307645 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:35:51,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:35:51,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:35:51,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:35:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:35:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:35:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:35:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:35:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  320078 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:36:03,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  329376 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A01:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 2, 2]] confirmed: true
2013-08-27 08:36:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  329485 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330187 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>43 name=>DESIGN_ID value=>577051
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>44 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>45 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>46 name=>SAMPLE_TRACKING value=>None
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>47 name=>control:sample_tracking:A_A01 value=>None
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>48 name=>control:sample_tracking:B_A01 value=>None
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>49 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>50 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>51 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>52 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>53 name=>MAGIC_ALIGNMENT4_A01 value=>6565409
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>54 name=>CHIP_ID value=>546306
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>55 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330639 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>6 id=>56 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330795 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  330904 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[3] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617740020_96604994.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617753982_270215103.properties
2013-08-27 08:36:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331029 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA01 dye:Cy3
2013-08-27 08:36:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331201 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:36:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331201 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:3.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331357 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A03 dye:Cy3.
2013-08-27 08:36:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331372 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:36:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  331372 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:36:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:36:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:36:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:36:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:36:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:36:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:36:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:36:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  343041 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:36:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353088 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A03:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353212 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353322 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>57 name=>DESIGN_ID value=>577051
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>58 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>59 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>60 name=>SAMPLE_TRACKING value=>None
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>61 name=>control:sample_tracking:A_A01 value=>None
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>62 name=>control:sample_tracking:B_A01 value=>None
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>63 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>64 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>65 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>66 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>67 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>68 name=>CHIP_ID value=>546306
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>69 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  353961 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>4 id=>70 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:36:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  354117 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:36:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  354226 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[5] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617737321_2005675118.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617776945_1134399219.properties
2013-08-27 08:36:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  354351 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA03 dye:Cy3
2013-08-27 08:36:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  354507 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [BURSTED].
2013-08-27 08:36:28,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  354507 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:5.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  355318 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  355443 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Aligning sample for 546306 array:A02 dye:Cy3.
2013-08-27 08:36:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  355459 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:36:29,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  355459 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:36:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Looking for fiducial corners...
2013-08-27 08:36:38,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperLeft
2013-08-27 08:36:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential UpperRight
2013-08-27 08:36:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerLeft
2013-08-27 08:36:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Found potential LowerRight
2013-08-27 08:36:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Fine tuning...
2013-08-27 08:36:39,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  
2013-08-27 08:36:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  367674 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Evaluating accuracy of autoalignment
2013-08-27 08:36:51,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  377299 [pool-1-thread-1] INFO  com.nimblegen.common.jobservice.jobs.AlignmentCheckUtil - finished confirming alignment for 546306:A02:Cy3. matches [UR,LR,LL,UL]: [[2, 1, 3, 2]] confirmed: true
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  377408 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Outcome of auto-alignment confirmation: PASS
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  377533 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Generating thumbnail images
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>71 name=>DESIGN_ID value=>577051
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>72 name=>DESIGN_ID1_A01 value=>577051
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>73 name=>DESIGN_ID2_A01 value=>577051
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>74 name=>SAMPLE_TRACKING value=>None
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>75 name=>control:sample_tracking:A_A01 value=>None
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>76 name=>control:sample_tracking:B_A01 value=>None
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>77 name=>MAGIC_ALIGNMENT value=>6581857
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>78 name=>MAGIC_ALIGNMENT1_A01 value=>6581857
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>79 name=>MAGIC_ALIGNMENT2_A01 value=>6581857
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>80 name=>MAGIC_ALIGNMENT3_A01 value=>6581857
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>81 name=>MAGIC_ALIGNMENT4_A01 value=>6581857
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>82 name=>CHIP_ID value=>546306
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>83 name=>CHIP_ID1_A01 value=>546306
2013-08-27 08:36:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378032 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - created decoded number record: arrayTiffId=>5 id=>84 name=>CHIP_ID2_A01 value=>546306
2013-08-27 08:36:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378204 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [BURSTED] to [COMPLETE].
2013-08-27 08:36:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378313 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - alignment file for labeled sample[1] dye[Cy3]:Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617738616_1250005995.tif.properties is stored as Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617801578_940557750.properties
2013-08-27 08:36:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Finished aligning array for 546306 arrayA02 dye:Cy3
2013-08-27 08:36:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378594 [pool-1-thread-1] DEBUG com.nimblegen.common.services.model.impl.SlideService - status for slide result[1] dye[Cy3] was saved from [COMPLETE] to [COMPLETE].
2013-08-27 08:36:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  378594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:auto align tiff files for labeled sample:1.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  379654 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380622 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:start analysis workflow[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380622 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380637 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380637 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:Importing Image for slide barcode 546306 dye:Cy3[COMPLETED] was removed from job service submissions.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380684 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:18 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:17 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380778 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 94ms
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380793 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380793 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380824 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380840 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380856 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380918 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380918 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617639615_540357186.tif
2013-08-27 08:36:54,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  380965 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617814807_1191856095\546306A03_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-27 08:36:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  381776 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:36:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  381776 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:37:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  413990 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617814807_1191856095\546306A03_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-27 08:37:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  413990 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:37:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  414068 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617814807_1191856095\546306A03_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:37:05 PDT 2013	border=0	ul_x=134.378	ul_y=133.412	ur_x=2991.781	ur_y=126.571	lr_x=3002.214	lr_y=3943.390	ll_x=145.011	ll_y=3949.990	qcscore=0.196	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617814807_1191856095\546306A03_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:37:05 PDT 2013	border=0	ul_x=134.378	ul_y=133.412	ur_x=2991.781	ur_y=126.571	lr_x=3002.214	lr_y=3943.390	ll_x=145.011	ll_y=3949.990	qcscore=0.196	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425238 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-27T083739_635.pair
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425316 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425316 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425440 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425440 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425456 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425456 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-27 08:34:54[COMPLETED] was removed from job service submissions.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425487 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425565 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425581 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425596 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425612 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425643 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425659 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425659 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:37:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  425690 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:37:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  435877 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:37:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  435892 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:37:49,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617639615_540357186.xys...
2013-08-27 08:37:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  444082 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:37:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  444082 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:37:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  444098 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:37:57,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  444114 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:38:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  447670 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:38:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  451258 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:38:15,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  461882 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462163 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462178 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462178 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:24 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:23 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462194 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 36722ms
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462210 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462210 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462225 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462241 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462256 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462256 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:38:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  462272 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478434 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478434 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478434 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478558 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478558 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478574 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478574 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-27 08:34:54[COMPLETED] was removed from job service submissions.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478605 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:42 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:41 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478683 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 93ms
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478699 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478699 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478730 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478761 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478761 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478777 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478839 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478839 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617640896_555842635.tif
2013-08-27 08:38:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  478870 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617912728_1083092666\546306A02_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-27 08:38:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  479635 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:38:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  479635 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:39:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  511537 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617912728_1083092666\546306A02_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-27 08:39:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  511537 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:39:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  511615 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617912728_1083092666\546306A02_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:38:42 PDT 2013	border=0	ul_x=142.047	ul_y=137.301	ur_x=2998.994	ur_y=130.526	lr_x=3008.301	lr_y=3947.152	ll_x=150.912	ll_y=3953.311	qcscore=0.188	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377617912728_1083092666\546306A02_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:38:42 PDT 2013	border=0	ul_x=142.047	ul_y=137.301	ur_x=2998.994	ur_y=130.526	lr_x=3008.301	lr_y=3947.152	ll_x=150.912	ll_y=3953.311	qcscore=0.188	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522254 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-27T083916_635.pair
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522332 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522332 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522472 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522472 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522488 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522488 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-27 08:35:18[COMPLETED] was removed from job service submissions.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522519 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522613 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522628 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522628 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522644 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522675 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522691 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522691 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:39:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  522722 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:39:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  532815 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:39:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  532831 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:39:26,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617640896_555842635.xys...
2013-08-27 08:39:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  540896 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:39:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  540896 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:39:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  540912 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:39:34,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  540927 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:39:38,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  544515 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:39:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  547744 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:39:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  557947 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558337 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:48 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:47 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 35833ms
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558352 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558384 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558415 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558446 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558462 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:39:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  558462 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  573984 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  573984 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  573984 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574108 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574108 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574124 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:40:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574124 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-27 08:35:18[COMPLETED] was removed from job service submissions.
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574155 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574249 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574249 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:66 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574249 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:65 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574249 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574264 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574264 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 109ms
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574264 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574264 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574296 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574296 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574311 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574327 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574389 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574389 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617642375_654404885.tif
2013-08-27 08:40:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  574405 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618008278_649280961\546306A01_121101-OysterV9-MG-meth-HX3_635.tif
2013-08-27 08:40:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  575185 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:40:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  575185 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:40:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  606650 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618008278_649280961\546306A01_121101-OysterV9-MG-meth-HX3_635.pair
2013-08-27 08:40:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  606650 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:40:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  606728 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618008278_649280961\546306A01_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:40:18 PDT 2013	border=0	ul_x=148.309	ul_y=140.495	ur_x=3005.352	ur_y=134.244	lr_x=3013.544	lr_y=3949.859	ll_x=156.251	ll_y=3955.933	qcscore=0.214	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618008278_649280961\546306A01_121101-OysterV9-MG-meth-HX3_635.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:40:18 PDT 2013	border=0	ul_x=148.309	ul_y=140.495	ur_x=3005.352	ur_y=134.244	lr_x=3013.544	lr_y=3949.859	ll_x=156.251	ll_y=3955.933	qcscore=0.214	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617320 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-27T084051_635.pair
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617430 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617430 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617570 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617570 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617586 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617586 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) Pair Report Workflow 2013-08-27 08:35:19[COMPLETED] was removed from job service submissions.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617617 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617726 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617726 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617742 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617773 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617804 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617804 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:40:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  617820 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:41:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  628038 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:41:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  628053 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:41:02,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617642375_654404885.xys...
2013-08-27 08:41:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  636181 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:41:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  636181 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:41:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  636196 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:41:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  636212 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:41:13,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  639753 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:41:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  642998 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653247 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653497 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653512 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653528 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653528 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653528 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:72 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653528 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:71 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653528 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653544 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653544 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 35927ms
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653544 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653544 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653590 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653606 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653606 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653622 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:41:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  653622 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669128 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669128 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669128 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669253 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669253 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669268 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669268 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5) GFF Report Workflow 2013-08-27 08:35:19[COMPLETED] was removed from job service submissions.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669378 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669565 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669612 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669658 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669799 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669814 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669814 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:41:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  669939 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:41:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  679518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:41:53,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  679564 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:41:53,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617642375_654404885.xys...
2013-08-27 08:42:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  688300 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:42:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  688332 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:42:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  688378 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:42:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  688425 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:42:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  692029 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:42:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  695196 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:42:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  708565 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:42:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  708892 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:42:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  708986 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:42:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709095 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:118 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709158 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 39827ms
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709236 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709236 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709314 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709454 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709501 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709548 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709750 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709813 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709860 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709860 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:42:23,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  709969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:42:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  719734 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:42:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  719781 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:42:33,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617740020_96604994.xys...
2013-08-27 08:42:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  728283 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:42:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  728330 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:42:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  728377 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:42:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  728424 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:42:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  732043 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:42:49,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  735163 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:43:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  748657 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:43:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  748984 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:43:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749109 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749156 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749203 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749203 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:125 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749359 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:123 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749359 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749359 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749359 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 40123ms
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749406 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749406 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749437 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:121 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749437 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749468 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:117 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749468 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:124 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:119 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749484 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  749546 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-27 08:43:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  752697 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:126 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  752744 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-27 08:43:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  752744 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753290 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753337 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: 0.0020
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753774 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753774 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:122 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753774 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753820 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-27 08:43:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  753898 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:116 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754444 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754444 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754507 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-27 08:43:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  754522 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:0
2013-08-27 08:43:10,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  756582 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:2060
2013-08-27 08:43:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  757455 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:2933
2013-08-27 08:43:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  757518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-27 08:43:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  757518 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  757564 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-27 08:43:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  757627 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:43:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1................... 
2013-08-27 08:43:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100................... 
2013-08-27 08:43:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000................... 
2013-08-27 08:43:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004................... 
2013-08-27 08:43:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460.... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489.... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............ 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............ 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722................... 
2013-08-27 08:43:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301................... 
2013-08-27 08:43:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........ 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696. 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................ 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409....... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........ 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994................... 
2013-08-27 08:43:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818................... 
2013-08-27 08:43:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544................... 
2013-08-27 08:43:22,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................ 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........ 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721................... 
2013-08-27 08:43:23,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773.. 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90................... 
2013-08-27 08:43:24,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........ 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998................... 
2013-08-27 08:43:25,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999................... 
2013-08-27 08:43:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  773008 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:115 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  773055 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-27 08:43:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  773055 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:27,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  773133 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:43:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  792961 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:43:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  792961 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  793008 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-27 08:43:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  793070 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:43:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  794380 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:120 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:43:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  794427 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-27 08:43:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  794427 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-27 08:43:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  794490 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:44:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  810105 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:44:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  810105 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  810152 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:44:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  810168 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:44:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  811213 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:1061
2013-08-27 08:44:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  811884 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:1732
2013-08-27 08:44:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  811930 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:44:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  811930 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  811977 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812242 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812242 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812289 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812305 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812352 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:63
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812601 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:312
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812648 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812648 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812820 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812820 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812835 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812835 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy5/Cy3) DNA Methylation Workflow 2013-08-27 08:36:28[COMPLETED] was removed from job service submissions.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812866 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:132 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:131 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812944 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 93ms
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812960 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812960 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812976 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812991 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  812991 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813007 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813069 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813069 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617740020_96604994.tif
2013-08-27 08:44:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813100 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618246973_391166249\546306A01_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-27 08:44:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813958 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:44:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  813958 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:44:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  845845 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618246973_391166249\546306A01_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-27 08:44:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  845845 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:44:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  845923 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618246973_391166249\546306A01_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:44:17 PDT 2013	border=0	ul_x=148.229	ul_y=140.883	ur_x=3005.455	ur_y=134.526	lr_x=3013.656	lr_y=3949.977	ll_x=156.294	ll_y=3956.281	qcscore=0.344	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618246973_391166249\546306A01_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:44:17 PDT 2013	border=0	ul_x=148.229	ul_y=140.883	ur_x=3005.455	ur_y=134.526	lr_x=3013.656	lr_y=3949.977	ll_x=156.294	ll_y=3956.281	qcscore=0.344	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856640 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A01_121101-OysterV9-MG-meth-HX3_2013-08-27T084450_532.pair
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856718 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856718 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856827 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856827 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856843 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856843 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-27 08:36:28[COMPLETED] was removed from job service submissions.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856874 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856968 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856983 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856983 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  856999 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A01_121101-OysterV9-MG-meth-HX3
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  857030 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  857046 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  857046 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:44:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  857077 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:45:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  867201 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:45:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  867217 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:45:01,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617740020_96604994.xys...
2013-08-27 08:45:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  875344 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:45:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  875360 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:45:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  875360 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:45:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  875376 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:45:12,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  878886 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:45:16,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  882162 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892146 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892629 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892645 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892660 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:138 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:137 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892676 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 35802ms
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892692 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892692 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892723 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892723 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892738 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892738 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:45:26,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  892754 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908307 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908307 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908307 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908416 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908416 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908432 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908432 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A01_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-27 08:36:28[COMPLETED] was removed from job service submissions.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908526 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908728 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908775 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908822 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908869 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908931 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908947 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  908947 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:45:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  909056 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:45:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  918619 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:45:52,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  918666 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:45:52,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617639615_540357186.xys...
2013-08-27 08:46:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  927433 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:46:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  927480 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:46:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  927526 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:46:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  927573 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:46:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  931130 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:46:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  934390 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:46:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  947557 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:46:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  947900 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:46:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  947978 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948228 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:184 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948274 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 39780ms
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948321 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948384 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948524 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948571 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948602 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948805 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948898 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948930 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  948930 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:46:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  949023 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:46:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  958804 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:46:32,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  958867 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:46:32,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617737321_2005675118.xys...
2013-08-27 08:46:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  967462 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:46:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  967509 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:46:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  967556 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:46:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  967603 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:46:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  971222 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:46:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  974358 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:47:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  987789 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988132 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988210 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988257 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988304 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988304 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:191 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988304 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:189 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988304 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988585 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988585 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 40248ms
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988663 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988663 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988678 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:187 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988678 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:183 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:190 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988710 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988725 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:185 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988725 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  988788 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-27 08:47:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  991752 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:192 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  991798 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-27 08:47:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  991798 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992344 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992391 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: -0.1065
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992766 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992766 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:188 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992766 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992828 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-27 08:47:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  992890 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993374 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993374 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:182 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993436 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993436 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993530 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-27 08:47:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  993592 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460.... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489.... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............ 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............ 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698................... 
2013-08-27 08:47:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313................... 
2013-08-27 08:47:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........ 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696. 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................ 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409....... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........ 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046................... 
2013-08-27 08:47:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676................... 
2013-08-27 08:47:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544................... 
2013-08-27 08:47:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................ 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........ 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722................... 
2013-08-27 08:47:19,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773.. 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905................... 
2013-08-27 08:47:20,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........ 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998................... 
2013-08-27 08:47:21,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999................... 
2013-08-27 08:47:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1008990 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:181 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1009036 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-27 08:47:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1009036 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:22,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1009083 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:47:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1028833 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:47:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1028833 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1028880 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-27 08:47:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1028895 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:15
2013-08-27 08:47:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1030580 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:1700
2013-08-27 08:47:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1031266 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:2386
2013-08-27 08:47:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1031313 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-27 08:47:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1031313 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1031360 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-27 08:47:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1031422 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:47:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1032452 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:186 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:47:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1032499 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-27 08:47:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1032499 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-27 08:47:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1032546 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:48:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1048068 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:48:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1048068 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:01,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1048114 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:48:02,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1048130 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:48:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1049175 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:1061
2013-08-27 08:48:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1049799 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:1685
2013-08-27 08:48:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1049846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:48:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1049846 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1049940 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050236 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050236 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050283 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050314 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050345 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:47
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050673 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:375
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050751 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050751 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050938 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050938 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050969 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1050969 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy5/Cy3) DNA Methylation Workflow 2013-08-27 08:36:52[COMPLETED] was removed from job service submissions.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051000 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:198 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:197 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051094 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 109ms
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051110 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051110 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051125 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:48:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051125 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051141 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051141 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051203 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051203 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617737321_2005675118.tif
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1051234 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618485107_923194565\546306A03_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1052014 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:48:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1052014 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:48:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1083714 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618485107_923194565\546306A03_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-27 08:48:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1083714 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:48:37,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1083792 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618485107_923194565\546306A03_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:48:15 PDT 2013	border=0	ul_x=134.361	ul_y=133.568	ur_x=2991.769	ur_y=126.470	lr_x=3002.442	lr_y=3943.706	ll_x=145.130	ll_y=3950.477	qcscore=0.329	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618485107_923194565\546306A03_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:48:15 PDT 2013	border=0	ul_x=134.361	ul_y=133.568	ur_x=2991.769	ur_y=126.470	lr_x=3002.442	lr_y=3943.706	ll_x=145.130	ll_y=3950.477	qcscore=0.329	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094493 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A03_121101-OysterV9-MG-meth-HX3_2013-08-27T084848_532.pair
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094571 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094571 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094712 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094712 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094727 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094727 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-27 08:36:52[COMPLETED] was removed from job service submissions.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094758 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094868 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094868 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094883 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094899 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A03_121101-OysterV9-MG-meth-HX3
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094930 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094946 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094946 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:48:48,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1094977 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:48:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1105382 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:48:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1105398 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:48:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617737321_2005675118.xys...
2013-08-27 08:49:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1113619 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:49:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1113619 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:49:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1113619 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:49:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1113634 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:49:11,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1117144 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:49:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1120467 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130436 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130888 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130904 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130904 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:204 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:203 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 36176ms
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130919 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130935 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130950 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130966 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:49:24,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1130982 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146722 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146738 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146738 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146878 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146878 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146894 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146894 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A03_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-27 08:36:53[COMPLETED] was removed from job service submissions.
2013-08-27 08:49:40,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1146987 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147143 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147190 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147237 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147284 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147346 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147362 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147362 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:49:41,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1147471 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:49:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1157127 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:49:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1157174 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:49:51,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617738616_1250005995.xys...
2013-08-27 08:49:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1165894 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:49:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1165941 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:49:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1165988 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:49:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1166035 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:50:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1169638 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:50:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1172821 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:50:19,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1185956 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186284 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186362 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186408 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:250 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:1 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186455 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 39515ms
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186502 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186502 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186549 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186689 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186736 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186783 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1186970 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1187048 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1187079 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:50:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1187079 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:50:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1187188 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:50:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1197048 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:50:30,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1197094 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:50:31,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617640896_555842635.xys...
2013-08-27 08:50:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1205706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:50:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1205768 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:50:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1205815 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:50:39,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1205862 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:50:43,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1209450 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:50:46,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1212554 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:50:59,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1225830 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226157 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226235 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226313 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:257 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:255 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226516 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 40014ms
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226563 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226563 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226578 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:253 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226578 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:249 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run loess.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:256 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:251 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226594 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Probe Uniqueness Filter.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:00,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1226641 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting calculating ratio.
2013-08-27 08:51:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1229620 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:258 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1229667 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed calculating ratio.
2013-08-27 08:51:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1229667 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run ratio.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230182 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Biweight Mean Centering.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230229 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Biweight mean value: 0.0069
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230603 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Biweight Mean Centering.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230603 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:254 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230603 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run biweight normalization.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230650 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Merge Data operation.
2013-08-27 08:51:04,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1230697 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting averaging replicate data.
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231149 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed averaging replicate data.
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231149 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:248 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231196 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Merge Data operation complete.
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231196 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Merge container data.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231243 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Sliding Window KS Significance Test
2013-08-27 08:51:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1231305 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold100................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1000................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1004................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1009................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold101................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1014................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1016................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1017................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1018................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold102................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1021................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1024................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1028................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1031................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1032................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1033................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1036................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1037................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1041................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1045................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold105................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1050................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1052................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1053................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1054................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1056................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1058................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold106................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1061................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1064................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1067................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold107................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1070................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1077................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1080................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1081................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1083................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1084................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1086................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1088................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold109................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1093................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1094................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1096................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1097................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold11................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold110................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1100................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1101................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1104................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1107................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1108................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1112................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1116................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1119................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1121................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1123................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1124................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1125................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1127................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold113................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1132................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1138................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1142................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1144................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1148................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1149................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold115................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1154................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1155................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1157................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1159................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold116................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1160................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1163................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1164................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1166................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold117................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1172................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1174................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1177................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1179................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold118................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1180................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1181................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1185................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1187................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1188................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1189................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1195................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1199................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold12................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold120................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1200................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1203................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1204................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1209 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold121................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1210................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1212................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1213................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1214................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1217................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1219................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold122................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1220................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1221................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1222................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1227................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1228................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1231................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1232................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1234................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1235................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1237................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1241................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1244................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1245................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1247................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1249................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1252................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1253................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1255................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1256................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1258................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold126................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1260................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1262................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1264................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1266................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1267................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold127................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1272................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1277................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1279................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold128................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1282................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1283................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1286................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1288................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1290................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1293................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1297................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1299................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold13................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1301................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1304................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1307................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1308................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1309................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1314................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1315................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1316................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1317................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1318................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold132................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1321................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1322................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1323................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1324................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1327................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1328................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1329................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold133 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1330................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1333................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1337................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1339................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1341................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1345................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1347................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1348................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1349................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1350................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1352................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1354................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1359................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1360................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1362................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1366................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1367................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1371................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1372................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1373................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1375................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1377................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold138................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1382................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1385................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1386................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1388................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold139................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1391................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1393................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1396................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1397................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1399................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold140................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1402................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1403................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1404................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1409................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold141................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1411................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1419................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold142................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1423................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1427................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold143................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1437................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold144................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1440................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1447................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1448................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1449................... 
2013-08-27 08:51:11,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold145................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1451................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1452................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1454................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1455................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1456................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1459................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold146................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1460.... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1462................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1464................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1467................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1468................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1469................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1470................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1475................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1476................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold148................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1481................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1484................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1485................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1488................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1489.... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold149................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1490................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1491................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1492................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1493................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1497................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold150................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1501................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1503................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1508................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1509................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1511................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1512................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1514................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1515................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1518................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold152................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1521................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1522................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1524................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1525................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1526................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1527................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1528................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1532................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1533................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1535................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1536................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold154............ 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1541................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1543................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1546... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1551................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1553................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1554................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1556................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1559................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold156................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1560................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1561................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1562............ 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1564................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1567................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1569................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold157................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1571................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1572................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1574................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1575................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1576................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1578................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1579................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1581................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1583................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1584................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1585................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1586................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1588................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1589................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1592................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1597................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1598................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1599................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold160................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1600................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1601................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1603................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1605................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1608................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1609................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold161................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1610................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1611................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1616................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold162................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1625................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1627................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold163................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1630................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1631................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1632................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1633................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1634................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1637................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1638................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold164................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1641................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1643................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1644 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1645................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold165................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1650................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1651................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1652................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1654................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1656................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1662................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1663................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1665................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1670................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1671................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1672................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1673................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1678................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold168................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1680................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1682................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1686................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1687................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1688................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold169................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1690................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1697................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1698................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1700................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1703................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1704................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1705................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1707................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1708................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1709................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1710................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1711................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1714................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1715................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1717................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1719................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold172................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1720................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1722................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1723................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1726................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1729................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold173................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1730................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1733................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1734................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1735................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1736................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1737................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1738................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold174................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1740................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1741................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1742................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1743................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1745................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1746................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold175................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1750................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1751................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1752................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1753................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1754................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1757................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1758................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1759................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1763................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1766................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1767................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1769................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold177................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1770................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1771................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1774................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold178................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1780................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1781................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1785................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1786................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1788................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold179................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1791................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1792................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1794................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1796................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold180................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1800................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1801................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1802................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1803................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1804................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1805................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1806................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1810................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1815................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1816................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1817................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1818................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1819 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1821................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1822................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1823................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1824................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1825................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1827................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1829................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1832................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1834................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1835................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1836................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1838................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold184................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1840................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1841................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1843................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1844................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1845................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1846................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1848................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1849................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1850................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1852................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1855................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1856................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1857................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1858................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1859................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold186................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1860................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1861................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1862................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1863................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1864................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1865................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1866................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1867................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1868................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1869................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1870................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1871................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1872................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1873................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1874................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1876................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1877................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1878................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1879................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold188................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1880................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1881................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1882................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1883................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1884................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1885................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1886................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1887................... 
2013-08-27 08:51:12,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1888................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1889................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold189................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1890................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1891................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1892................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1893................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1894................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1895................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1896................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1897................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1898................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1899................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold19................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold190................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1900................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold1901................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold191................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold192................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold193................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold194................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold198................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold20................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold200................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold201................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold203................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold204................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold206................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold208................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold209................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold210................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold211................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold213................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold215................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold218................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold219................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold22................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold223................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold224................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold226................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold227................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold230................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold232................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold236................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold237................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold240................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold241................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold242................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold243................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold247................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold248................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold251................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold252................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold257................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold258................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold260................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold264................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold266................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold267................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold269................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold270................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold271................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold273................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold274................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold276................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold278................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold279................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold280................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold281................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold285................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold286................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold288................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold290................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold294................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold296................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold298................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold3................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold301................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold304................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold305................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold308................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold309................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold311................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold313................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold314................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold315................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold317................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold32................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold321................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold322................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold323................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold324................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold329................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold331................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold332................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold334................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold335................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold336................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold337................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold338................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold339................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold34................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold340................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold343................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold347................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold348................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold351................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold352................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold354................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold358................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold361................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold363................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold364................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold365................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold366................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold368................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold369................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold37................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold370................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold372................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold374................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold376................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold377................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold378................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold381................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold383................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold385................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold386................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold388................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold389................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold392................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39244................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39258................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39274................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold393................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39334................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39364................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39366................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39368................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39380................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39390................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold394................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39412................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39424................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39470................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39472................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39488................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold395................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39514................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39522................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39526................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39536................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39572................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39574................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39580................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39582................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39592................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39594........ 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold396................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39620................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39634................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39694................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39696. 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39712................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39720................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39730................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39740................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39744................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39754................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39758................... 
2013-08-27 08:51:13,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39778................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold398................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39800................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39804................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39878................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39884................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39894................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold399................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39958................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39960................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39966................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39990................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold39998................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold4................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold400................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40002................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40016................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40026................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40030................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40038................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40050................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40054................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40072................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40084................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40088................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40094................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold401................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40100................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40106................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40114................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40134................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40150................ 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40156................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40162................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40164................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40172................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40182................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40186................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold402................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40208................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40216................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40224................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40226................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40230................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40234................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40254................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40264................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40282................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40290................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40368................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40388................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40390................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40396................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold404................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40404................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40406................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40412................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40420................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40424................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40438................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40440................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40442................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40456................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40492................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40512................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40514................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40526................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40534................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40548................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40564................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold406................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40606................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40612................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40614................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40638................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40658................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40664................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40702................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40740................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40744................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold408................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40820................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40828................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40832................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40836................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40856................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40868................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40874 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40894................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold409....... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40910................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40916................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40938................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40948................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40950................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40952................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40960................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40980................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold40982........ 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold410................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41022................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41034................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41064................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41082................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41086................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41136................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41162................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41164................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41174................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold412................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41210................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41220................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41228................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41242................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41296................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold413................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41312................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41316................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41344................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41358................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41380................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41388................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41390................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41400................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41416................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41436................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41442................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41448................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41466................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41472................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41480................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41502................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41522................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41530................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41534................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41540................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41546................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41560................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41568................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41572................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41588................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41594................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold416................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41616................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41628................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41650................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41656................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41660................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41666................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41722................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41730................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41732................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41740................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41744................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41754................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41762................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41766 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41772................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41786................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41792................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41794................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold418................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41806................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41812................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41816................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41824................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41828................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41832................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41852................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41858................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41876................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41890................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41896................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold419................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41900................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41902................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41928................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41948................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41954................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41968................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41970................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41972................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41974................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41982................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41988................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41994................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold41998................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42022................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42030................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42032................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42040................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42046................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42048................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42060................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42062................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42076................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42090................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42096................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold421................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42112................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42124................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42128................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42130................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42144................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42158................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42164................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42172................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42184................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42190................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold422................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42208................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42210................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42214................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42226................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42236................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42246................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42252................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42262................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42264................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42268................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42272................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42274................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42302................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42306................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42326................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42328................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42348................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42364................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42380................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold424................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42402................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42408................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42422................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42440................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42446................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42448................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42450................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42466................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42486................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42490................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold425................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42508................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42516................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42518................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42524................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42528................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42530................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42540................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42556................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42558................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42568................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42570................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42584................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42592................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42596................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42598................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold426................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42604................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42618................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42634................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42640................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42648................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42662................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42674................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42684................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold427................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42704................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42726................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42740................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42754................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42760................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42762................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42766................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42770................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42776................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42784................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42788................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42790................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42794................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42836................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42840................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42850................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42866................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42880................... 
2013-08-27 08:51:14,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42890................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42892................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42894................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42896................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42904................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42922................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42924................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42930................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42946................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42948................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42960................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42974................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42990................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold42994................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43012................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43024................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43028................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43034................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43036................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43038................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43054................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43064................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43066................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43072................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43074................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43076................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43084................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43108................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43116................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43122................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43130................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43134................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43136................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43146................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43150................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43170................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43184................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43194................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold432................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43206................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43208................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43210................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43240................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43242................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43244................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43258................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43278................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43280................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43290................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold433................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43314................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43340................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43344................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43358................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43364................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43366................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43396................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43406................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43426................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43442................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43446................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43452................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43494................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43500................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43520................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43522................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43526................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43530................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43536................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43538................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43562................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43574................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43576................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43598................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43608................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43616................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43624................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43630................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43648................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43660................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43662................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43664................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43676................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43680................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43686................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43692................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43696................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43702................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43708................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43726................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43742................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43764................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43772................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43782................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43786................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43794................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43798................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43804................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43818................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43836................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43842................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43844................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43868................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43878................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43894................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43920................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43932................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43940................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43954................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43956................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43964................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43986................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold43988................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold440................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44006................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44008................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44054................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44064................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold44098................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold443................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold444................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold445................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold446................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold447................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold448................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold449................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold450................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold451................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold452................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold453................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold454................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold456................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold457................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold458................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold459................... 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold461 
2013-08-27 08:51:15,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold463................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold469................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold471................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold472................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold473................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold474................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold477................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold479................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold48................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold481................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold482................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold483................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold484................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold485................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold487................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold488................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold489................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold49................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold490................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold492................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold493................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold496................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold498................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold499................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold5................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold50................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold500................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold501................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold502................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold503................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold504................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold506................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold507................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold508................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold509................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold510................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold513................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold514................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold517................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold521................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold522................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold524................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold527................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold53................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold531................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold532................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold534................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold535................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold536................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold54................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold541................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold542................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold544................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold546................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold547................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold549................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold550................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold552................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold556................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold557................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold560................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold562................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold563................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold564................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold568................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold569................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold57................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold574................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold575................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold576................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold578................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold579................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold58................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold580................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold581................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold583................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold585................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold586................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold587................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold588................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold59................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold591................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold592................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold593................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold594................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold596................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold597................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold599................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold6................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold601................... 
2013-08-27 08:51:16,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold602................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold603................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold604................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold605................ 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold608................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold609................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold61................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold610................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold612................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold614................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold615................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold616................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold617................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold619................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold62................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold621................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold622................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold625................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold626................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold63................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold630................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold631................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold632................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold634................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold635................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold636................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold64................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold640................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold647................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold65................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold654................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold655................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold658................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold659................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold660................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold663................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold664................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold665................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold667................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold67................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold670................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold672................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold673................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold675................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold676................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold678................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold681................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold682................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold683................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold685................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold686................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold689................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold694................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold695................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold698................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold70................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold700........ 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold705................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold707................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold709................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold71................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold712................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold713................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold714................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold716................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold718................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold719................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold72................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold721................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold722................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold723................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold724................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold726................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold728................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold730................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold733................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold734................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold736................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold737................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold743................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold747................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold748................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold75................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold750................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold751................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold752................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold753................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold754................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold756................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold759................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold76................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold760................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold765................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold767................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold77................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold770................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold771................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold772................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold773.. 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold775................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold78................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold780................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold782................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold783................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold784................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold786................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold787................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold788................... 
2013-08-27 08:51:17,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold789................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold79................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold790................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold793................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold794................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold801................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold802................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold804................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold806................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold807................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold808................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold809................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold810................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold814................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold817................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold818................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold819................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold82................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold825................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold827................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold828................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold829................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold833................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold835................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold839................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold847................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold85................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold850................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold852................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold853................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold854................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold858................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold86................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold866................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold867................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold868................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold870................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold873................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold879................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold88................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold880................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold885................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold888................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold890................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold891................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold892................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold893................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold894................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold895................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold896................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold9................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold90................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold905................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold908................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold91................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold914................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold916................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold917................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold922................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold923................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold925................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold926................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold929................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold930................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold932................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold933................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold934................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold935................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold939................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold94................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold941........ 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold942................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold948................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold950................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold951................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold954................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold955................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold960................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold962................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold963................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold964................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold967................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold968................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold971................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold973................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold975................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold976................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold977................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold98................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold980................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold983................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold987................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold99................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold992................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold993................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold998................... 
2013-08-27 08:51:18,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  (error stream) Running ACME KS (thr 2s tail prob, 1s test) scaffold999................... 
2013-08-27 08:51:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1246500 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:247 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:51:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1246546 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Sliding Window KS Significance Test
2013-08-27 08:51:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1246546 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Sliding Window KS Significance Test[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:20,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1246593 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:51:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1268886 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:51:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1268886 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1268932 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Merge Data.
2013-08-27 08:51:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1268948 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:51:44,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1270820 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:1888
2013-08-27 08:51:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1271647 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:2715
2013-08-27 08:51:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1271694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Merge Data.
2013-08-27 08:51:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1271694 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:51:45,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1271740 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:52:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1289540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:52:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1289540 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1289618 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:52:03,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1289634 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:16
2013-08-27 08:52:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1291334 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:1716
2013-08-27 08:52:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1292176 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:2558
2013-08-27 08:52:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1292223 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Sliding Window KS Significance Test.
2013-08-27 08:52:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1292223 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1292270 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Peak Identification
2013-08-27 08:52:06,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1292332 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing 1 Containers
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293315 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:252 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293362 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Peak Identification
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293362 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Run Peak Identification[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293409 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF Report.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293721 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed GFF Report.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293721 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate GFF report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293768 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for Peak Identification.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293783 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at file write start:15
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1293814 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - Time at finished file write:46
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294033 [pool-1-thread-1] DEBUG com.nimblegen.common.pio.dataio.write.GenomeDatasetWriteAdapter - total write time:265
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Done saving analysis data for Peak Identification.
2013-08-27 08:52:07,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:output analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294251 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294251 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294267 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294267 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3/Cy5) DNA Methylation Workflow 2013-08-27 08:36:53[COMPLETED] was removed from job service submissions.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294298 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:264 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:263 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 140ms
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294438 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294454 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Pair report
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294470 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294470 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294485 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294563 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Output directory: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294563 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - Outputing report for Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617738616_1250005995.tif
2013-08-27 08:52:08,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1294594 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - TempFile :	Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618728467_363857878\546306A02_121101-OysterV9-MG-meth-HX3_532.tif
2013-08-27 08:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1295562 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:52:09,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1295562 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:52:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1328758 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618728467_363857878\546306A02_121101-OysterV9-MG-meth-HX3_532.pair
2013-08-27 08:52:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1328758 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - fixing design name
2013-08-27 08:52:42,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1328883 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618728467_363857878\546306A02_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:52:19 PDT 2013	border=0	ul_x=142.117	ul_y=137.831	ur_x=2999.202	ur_y=130.954	lr_x=3008.466	lr_y=3947.634	ll_x=151.231	ll_y=3953.838	qcscore=0.315	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.' = # software=DEVA	version=1.2.1	imagefile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\tmp.1377618728467_363857878\546306A02_121101-OysterV9-MG-meth-HX3_532.tif	designfile=Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf	designname=1377617596688_2093147010	designid=577051	date=Tue Aug 27 08:52:19 PDT 2013	border=0	ul_x=142.117	ul_y=137.831	ur_x=2999.202	ur_y=130.954	lr_x=3008.466	lr_y=3947.634	ll_x=151.231	ll_y=3953.838	qcscore=0.315	locallyaligned=no	correctAstig=no	Knots=	auto=no	company_name='Roche NimbleGen, Inc.'	intended_use='For Life Science Research only. Not for use in diagnostic procedures.'
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341254 [pool-1-thread-1] DEBUG com.nimblegen.common.services.infrastructure.ExportService - PAIR file : Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\546306A02_121101-OysterV9-MG-meth-HX3_2013-08-27T085255_532.pair
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341348 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Pair submitted
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341348 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341457 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341457 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341472 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341472 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) Pair Report Workflow 2013-08-27 08:36:53[COMPLETED] was removed from job service submissions.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341488 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting Analysis Data Input
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341582 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341597 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341597 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341613 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing array: 546306A02_121101-OysterV9-MG-meth-HX3
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341660 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning extract of XYS File.
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341691 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NCD file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596564_146220591.ncd
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341691 [pool-1-thread-1] DEBUG com.nimblegen.common.nimblescanfacade.NimbleScanScannedTiffProcessor - Using NDF file: Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\data\filestore\2013\8\27\8\1377617596688_2093147010.ndf
2013-08-27 08:52:55,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1341706 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - loading alignment settings
2013-08-27 08:53:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1352080 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating XYS report
2013-08-27 08:53:05,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1352096 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - generating signal report
2013-08-27 08:53:06,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  Generating X,Y and Signal Report to Z:\users\c\csather\TO_BE_REVIEWED_SCANS\OysterChick2\DEVA\temporary_working_files\temp_files\1377617738616_1250005995.xys...
2013-08-27 08:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1360614 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - completed XYS reporting
2013-08-27 08:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1360614 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Tile Cache was flushed.
2013-08-27 08:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1360614 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed extract of XYS File.
2013-08-27 08:53:14,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1360629 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Beginning merge data process.
2013-08-27 08:53:18,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1364233 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed XYS file
2013-08-27 08:53:21,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1367868 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed POS file
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379365 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Parsed NDF file
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379833 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Writing genome data set
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379848 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed merge data process.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379848 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Saving analysis data for connected operations.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Processing output data.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:270 dataclass:class com.nimblegen.deva.common.domain.data.impl.GenomeDataset]] is being set.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.DockBuffer - data for port buffer[[port buffer--id:269 dataclass:class java.lang.Long]] is being set.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:2 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.analysisworkflow.AbstractOperation - Data not set.  A dock buffer does not exist for operation:analysis data input port:3 (this could be normal usage where nothing is connected to the port so the data are not needed downstream.)
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.common.analysis.OperationAnalysisDataInput$InputAnalysisData - Total time for input: 38392ms
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379864 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Completed Analysis Data Input
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379880 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:input analysis data[COMPLETED] was removed from submitted tasks.
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379880 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379895 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Use extraction settings based on slide format
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379895 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Border width setting: 0
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379911 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Not using local alignment
2013-08-27 08:53:33,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1379926 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - Starting GFF report
2013-08-27 08:53:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397086 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF report complete
2013-08-27 08:53:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397102 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - GFF submitted
2013-08-27 08:53:50,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397102 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:Generate report[COMPLETED] was removed from submitted tasks.
2013-08-27 08:53:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397211 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - subtask:complete job.[COMPLETED] was removed from submitted tasks.
2013-08-27 08:53:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397211 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Attempting deletion of 1 filetokens.
2013-08-27 08:53:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397227 [pool-1-thread-1] DEBUG com.nimblegen.common.services.pioservices.impl.FilePioService$TransactionalFileDeleter - Successfully deleted 1/1 file tokens.
2013-08-27 08:53:51,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  1397227 [pool-1-thread-1] DEBUG com.nimblegen.deva.common.jobservice.JobService - task:546306A02_121101-OysterV9-MG-meth-HX3(Cy3) GFF Report Workflow 2013-08-27 08:36:54[COMPLETED] was removed from job service submissions.
2013-08-27 09:09:58,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2364474 [AWT-EventQueue-0] INFO  com.nimblegen.common.app.guicomponents.AppMainFrame - Attempting to close application.
2013-08-27 09:09:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2364505 [AWT-EventQueue-0] DEBUG com.nimblegen.common.app.guicomponents.AppMainFrame - recording frame size as maximized:true width:1024.0 height:768.0
2013-08-27 09:09:58,DEBUG,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  2365113 [AWT-EventQueue-0] DEBUG com.nimblegen.common.services.ServiceProvider - Temporary working directory cleared (total time:593ms)
2013-08-27 09:09:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamLogger,  Error StreamLogger 366384346 ending.
2013-08-27 09:09:59,INFO,com.nimblegen.deva.projectmanager.launcher.StreamWorker,  StreamWorker 986087273 ending.