Basic Statistics
Measure | Value |
---|---|
Filename | 3291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19319381 |
Filtered Sequences | 0 |
Sequence length | 101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGC | 128262 | 0.6639032585981921 | No Hit |
CTTAGAAACTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGC | 112448 | 0.5820476339278158 | No Hit |
GTCCTTTCGTACTAAGAAAAGTATAACTTTCGTGGATAGAAACTGACCTG | 103188 | 0.5341164916205131 | No Hit |
CCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCT | 97001 | 0.502091656042189 | No Hit |
CTCTCCAAAAAAATTACGCTGTTATCCCTACGGTAACTTATTCCTTTGCT | 50347 | 0.2606035876615302 | No Hit |
CTTTGCTTAAAAGAAAAGCTTTAACGCTTTTATGCGAGTTAGATGCTATT | 49274 | 0.2550495794870446 | No Hit |
GCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTTTT | 46900 | 0.2427614011028614 | No Hit |
CCCTACGGTAACTTATTCCTTTGCTCGCTATTTAGCGGATCACTTAATTT | 41323 | 0.21389401658365764 | No Hit |
CCTTTGCTTAAAAGAAAAGCTTTAACGCTTTTATGCGAGTTAGATGCTAT | 41070 | 0.21258445081651423 | No Hit |
CAAAAACATCGCCCCTTGCAAAATAATTAACGAATAAGGGGTCCTGCCTG | 38083 | 0.19712329292537892 | No Hit |
CTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTT | 37711 | 0.19519776539424322 | No Hit |
CTCCGCGATTGCCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAA | 37387 | 0.19352069302841535 | No Hit |
CCCCAGTCTTGCCATTCATACCAGCCTCTAATTAAGAGGCAAATGATTAT | 36717 | 0.19005267301266018 | No Hit |
CCTCGATGTTGGATCGAGATTTCCTAGAGATGCAGCAGTTTCTAAGGGTT | 36568 | 0.18928142677035045 | No Hit |
CGAGAAGACCCTATCGAGCTTTAGTAAAATTGTTAGTAGCATGTAAATAT | 35094 | 0.1816517827356891 | No Hit |
CTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTTTTA | 31808 | 0.16464295621065705 | No Hit |
CCCTTAGAAACTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTC | 30840 | 0.15963244371028243 | No Hit |
GCTACCTTTGCACGGTCAAAATACCGCGGCCGTTTAACTACGTCACTGGG | 30693 | 0.1588715497665272 | No Hit |
CCCCAGTCTTGCCATTCATACCAGCCTCTATTTAAGAGGCAAATGATTAT | 29922 | 0.15488073867377014 | No Hit |
CTCTGGTCCTTTCGTACTAAGAAAAGTATAACTTTCGTGGATAGAAACTG | 29852 | 0.15451840822436289 | No Hit |
GCCGAGTTCCTTTTTCTTATTTTATTAAAAAATTAATTACCTGAGTTGGA | 29712 | 0.15379374732554837 | No Hit |
GCTAAATAGCGAGCAAAGGAATAAGTTACCGTAGGGATAACAGCGTAATT | 29680 | 0.15362811054867648 | No Hit |
ACTAGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATA | 29613 | 0.15328130854710098 | No Hit |
GTCGCAAACTTTTTTATCAATATGAACTCTCCAAAAAAATTACGCTGTTA | 29332 | 0.1518268106001947 | No Hit |
ATTTTTGTGAAGAAGCAGAAATAAATTCGTAGGACGAGAAGACCCTATCG | 28280 | 0.14638150156053137 | No Hit |
GGGCGATGTTTTTGGTAAACAGGCGAAGTCAATATTTGCCGAGTTCCTTT | 27695 | 0.14335345423334217 | No Hit |
ACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCT | 26467 | 0.13699714292088344 | No Hit |
AGCTCATCAAGTTTCGGGACACAAAACACTTTTAGTAAAAGCTTGCTCAA | 26349 | 0.13638635730616835 | No Hit |
GAATAAGTTACCGTAGGGATAACAGCGTAATTTTTTTGGAGAGTTCATAT | 25107 | 0.12995757990382817 | No Hit |
ACCAGCTATAACTTGATGCGATTAGCATTTCACATCTAATGTATCCTCAA | 24199 | 0.12525763636008833 | No Hit |
GCTACTAACAATTTTACTAAAGCTCGATAGGGTCTTCTCGTCCTACGAAT | 24176 | 0.12513858492671168 | No Hit |
GCCCCGACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGC | 23352 | 0.12087343792226055 | No Hit |
CACCATTAACTAAAATTAATTTCTTAGAAAACCAGCTATAACTTGATGCG | 23020 | 0.11915495636221471 | No Hit |
CCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCTT | 22836 | 0.11820254489520135 | No Hit |
ATAAATTCGTAGGACGAGAAGACCCTATCGAGCTTTAGTAAAATTGTTAG | 22425 | 0.11607514754225304 | No Hit |
AGAAGACCCTATCGAGCTTTAGTAAAATTGTTAGTAGCATGTAAATATAA | 21508 | 0.11132861865501799 | No Hit |
AGATAACTTTGGTTGGGGCAATCGCGGAGAATATAAATCCTCCGCTAAAA | 21403 | 0.1107851229809071 | No Hit |
GCCGTTTAACTACGTCACTGGGCAGGCAGGACCCCTTATTCGTTAATTAT | 20662 | 0.10694959636646742 | No Hit |
CCCCGACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCT | 20086 | 0.10396813438277346 | No Hit |
TATAAATCCTCCGCTAAAAGTATTAAAAATTACTATTTTTAAATTAAGTG | 19952 | 0.10327453037962242 | No Hit |
GCTCGCTATTTAGCGGATCACTTAATTTAAAAATAGTAATTTTTAATACT | 19899 | 0.10300019446792834 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 1182780 | 3.381463 | 8.513684 | 1 |
TTTTT | 19203780 | 3.0831795 | 4.592081 | 2 |
GGGGC | 1017210 | 2.880632 | 8.770261 | 2 |
CGCGG | 981420 | 2.753015 | 7.512227 | 20-24 |
CCCCC | 1009455 | 2.7521381 | 12.169813 | 1 |
GCCCC | 960555 | 2.6438022 | 48.451576 | 1 |
GCAGG | 1521125 | 2.4199624 | 8.569608 | 2 |
CCCCT | 1550345 | 2.3989289 | 8.418898 | 1 |
CCAAC | 2702455 | 2.3698552 | 15.788256 | 4 |
GACCC | 1487905 | 2.322587 | 6.712867 | 7 |
AGGGG | 1442580 | 2.316899 | 5.068883 | 35-39 |
TGGGG | 1436810 | 2.3093104 | 7.966535 | 8 |
CTGGG | 1449365 | 2.3074763 | 10.060545 | 1 |
GTTGG | 2528270 | 2.284487 | 6.3469048 | 8 |
GCCGG | 808200 | 2.2671096 | 9.093044 | 55-59 |
CCGCG | 808570 | 2.2467144 | 12.036744 | 3 |
CCCCA | 1446540 | 2.2366793 | 33.486427 | 1 |
GGCAG | 1370075 | 2.1796565 | 8.152922 | 1 |
TCCGC | 1373165 | 2.145039 | 9.118861 | 2 |
GGCCG | 758810 | 2.1285641 | 7.322227 | 75-79 |
TTCCT | 4235675 | 2.1111698 | 5.402685 | 65-69 |
CCTGC | 1345380 | 2.101636 | 6.9295897 | 1 |
GCTGC | 1330510 | 2.0982351 | 9.675553 | 1 |
GGGGT | 1280165 | 2.0575428 | 5.061883 | 3 |
GGGCA | 1288350 | 2.04964 | 5.159313 | 1 |
CTTCC | 2287775 | 2.0091302 | 5.6507645 | 1 |
CGGCC | 719910 | 2.0003612 | 7.437034 | 75-79 |
CCCTA | 2273450 | 1.9950992 | 8.403832 | 1 |
CCCTT | 2218560 | 1.9483455 | 6.1372514 | 1 |
CCTTT | 3900925 | 1.9443218 | 9.121477 | 3 |
CAGGC | 1208740 | 1.9048164 | 5.280625 | 20-24 |
TCGAG | 2125440 | 1.9009683 | 5.2897677 | 30-34 |
GCGAG | 1187395 | 1.8890305 | 5.311122 | 9 |
TGGGC | 1182230 | 1.8821813 | 6.5668507 | 95-97 |
CCTCC | 1212645 | 1.8763882 | 6.508146 | 1 |
GGGCG | 659820 | 1.8685412 | 9.829818 | 1 |
CCCAG | 1177860 | 1.8386134 | 15.456562 | 2 |
CCAAA | 3576910 | 1.7789403 | 10.374543 | 8 |
GGCGA | 1117185 | 1.777333 | 6.374829 | 2 |
GGTCG | 1114535 | 1.7744064 | 7.30024 | 45-49 |
CGCCG | 629995 | 1.750521 | 9.170904 | 55-59 |
CGAGG | 1090215 | 1.7344264 | 6.7862406 | 40-44 |
GCCTG | 1098950 | 1.7330612 | 5.8605547 | 1 |
CAACC | 1965055 | 1.7232093 | 14.659995 | 5 |
CGCTG | 1076830 | 1.6981776 | 5.6826134 | 1 |
TCTCC | 1915815 | 1.682474 | 5.575803 | 2 |
CTTTC | 3370270 | 1.6798296 | 7.226525 | 4 |
AAGCT | 3342670 | 1.6795236 | 5.125264 | 45-49 |
GCCCA | 1056100 | 1.6485487 | 5.2323236 | 1 |
CGCCC | 596890 | 1.6428618 | 6.6824217 | 1 |
CCTCG | 1033080 | 1.6137878 | 10.72829 | 1 |
CTGGC | 1023035 | 1.6133422 | 5.848916 | 45-49 |
CTCTC | 1827435 | 1.6048584 | 7.0030184 | 1 |
CTGCT | 1809940 | 1.6046578 | 11.400238 | 9 |
CAAAG | 3180150 | 1.5967041 | 10.306101 | 9 |
CCTAC | 1814040 | 1.5919371 | 5.3221407 | 2 |
TTGCC | 1793620 | 1.5901887 | 12.078604 | 9 |
TCCTA | 3164270 | 1.5760077 | 5.067891 | 65-69 |
CCTGG | 997820 | 1.5735776 | 5.3298306 | 45-49 |
AAAGT | 5483570 | 1.5625935 | 5.00861 | 9 |
CCAGC | 995875 | 1.5545388 | 6.538433 | 2 |
ACCAA | 3121970 | 1.5526805 | 10.593234 | 7 |
CTCCG | 969725 | 1.5148201 | 9.654777 | 1 |
TCCTT | 3033895 | 1.5121716 | 8.590841 | 2 |
CCTAG | 1698920 | 1.5051349 | 7.60628 | 65-69 |
CCGGG | 536145 | 1.5039588 | 8.693247 | 1 |
CTCCT | 1709885 | 1.5016257 | 6.789887 | 1 |
CTTTG | 2966840 | 1.4928567 | 5.752972 | 1 |
CTCCA | 1685125 | 1.4788058 | 5.767444 | 1 |
CCCAA | 1669470 | 1.464003 | 14.282303 | 3 |
TCGCC | 933300 | 1.4579202 | 7.764568 | 9 |
CTCGC | 930140 | 1.452984 | 5.2642393 | 1 |
CCCGG | 518895 | 1.4418155 | 5.897495 | 1 |
GCGGC | 506325 | 1.4203099 | 6.566969 | 75-79 |
TCCTG | 1600320 | 1.4188128 | 5.7626777 | 2 |
CGGGG | 498035 | 1.410383 | 8.839536 | 1 |
CTGCA | 1591135 | 1.4096442 | 7.563629 | 2 |
CCCCG | 510965 | 1.4063644 | 14.287157 | 1 |
CTTGC | 1580865 | 1.4015644 | 8.722654 | 8 |
CTCCC | 899250 | 1.391456 | 7.687409 | 1 |
ATCCC | 1561400 | 1.3702294 | 6.141695 | 95-97 |
GCTCG | 868165 | 1.3691096 | 5.4022036 | 20-24 |
TCCCT | 1552230 | 1.3631727 | 5.755233 | 95-97 |
GTCCT | 1510580 | 1.339251 | 14.12413 | 1 |
CGGTC | 843690 | 1.3305123 | 5.9517026 | 60-64 |
CCGAG | 826890 | 1.3030708 | 5.991338 | 2 |
TGCTG | 1455470 | 1.3027017 | 5.5954986 | 2 |
GAAAC | 2561020 | 1.2858486 | 6.769793 | 5 |
CTCGG | 811485 | 1.2797244 | 8.866381 | 1 |
GCATC | 1434790 | 1.2711326 | 5.557263 | 4 |
CCGGT | 789340 | 1.2448014 | 5.533525 | 55-59 |
GGCCC | 445515 | 1.2379199 | 13.750685 | 9 |
GTCGC | 782870 | 1.2345982 | 6.9338717 | 45-49 |
CCCTG | 790245 | 1.2344521 | 6.134142 | 1 |
AACCA | 2473720 | 1.2302798 | 9.496511 | 6 |
ACTGC | 1383820 | 1.2259766 | 11.21265 | 8 |
CACCA | 1365020 | 1.1970226 | 5.057827 | 1 |
GATGC | 1336835 | 1.1956494 | 5.1036534 | 5 |
TGGCC | 753125 | 1.1876899 | 8.874211 | 8 |
GTCTT | 2348465 | 1.1817024 | 5.6939893 | 6 |
CGATG | 1315145 | 1.17625 | 6.9924254 | 4 |
ATGGC | 1310090 | 1.171729 | 5.7895513 | 7 |
ACGCC | 729340 | 1.1384836 | 5.263567 | 55-59 |
CGTGG | 710365 | 1.1309439 | 5.198633 | 30-34 |
GGTCC | 706970 | 1.1149025 | 5.928175 | 5 |
GCCGA | 704235 | 1.1097825 | 5.9130125 | 1 |
GCTAC | 1252555 | 1.1096841 | 6.7667203 | 95-97 |
GATGT | 2163910 | 1.0984265 | 5.129274 | 5 |
TTCGT | 2168470 | 1.0911323 | 7.3038497 | 6 |
AACTG | 2148020 | 1.0792719 | 6.555134 | 7 |
TCGGC | 676050 | 1.0661414 | 5.023691 | 2 |
CTACT | 2130720 | 1.0612341 | 6.0036607 | 95-97 |
CATGC | 1197490 | 1.0609001 | 7.189637 | 90-94 |
CCAGT | 1182255 | 1.0474026 | 9.577818 | 3 |
GCCGT | 639600 | 1.0086591 | 5.7570114 | 1 |
CGGGC | 351835 | 0.9869446 | 5.2538757 | 1 |
GCGAT | 1062485 | 0.950274 | 5.9829464 | 5 |
GCCCT | 597265 | 0.93299556 | 5.4815254 | 1 |
GCTCA | 1047360 | 0.9278943 | 5.3494925 | 2 |
GTACT | 1794985 | 0.9025455 | 6.650821 | 9 |
TCTTG | 1769965 | 0.8906123 | 5.753365 | 7 |
CCCGA | 568340 | 0.8871662 | 5.5014234 | 2 |
CTGGA | 942065 | 0.84257174 | 5.1268663 | 2 |
CTCTG | 887810 | 0.78711516 | 5.0121775 | 1 |
CCCGC | 277275 | 0.7631632 | 5.7815266 | 1 |
TCGTA | 1508245 | 0.7583683 | 7.3091364 | 7 |
CTTAG | 1454700 | 0.7314451 | 6.9563603 | 1 |
TTTCG | 1445780 | 0.72748876 | 6.120075 | 5 |
CAGTC | 800850 | 0.7095021 | 7.899076 | 4 |
CGCGA | 436535 | 0.6879222 | 6.5915694 | 4 |
CGTAC | 543855 | 0.48182097 | 9.987052 | 8 |