FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 3291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 87027784 |
| Filtered Sequences | 0 |
| Sequence length | 101 |
| %GC | 38 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
![[WARN]](Icons/warning.png)
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CTCCTGTTCACTTTTCTTCCCCAATTCGAGGCTCTACACGCAAATGGCTG | 127163 | 0.14611770420352194 | No Hit |
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGGGG | 7078545 | 3.148779 | 6.6477485 | 1 |
| CCCCC | 6462160 | 2.5950677 | 15.489745 | 1 |
| CCCCA | 6716910 | 1.7431393 | 12.793636 | 1 |
| CTGGG | 5642715 | 1.55036 | 5.471439 | 1 |
| CCCAA | 9195150 | 1.5421015 | 5.7071238 | 2 |
| CCTGG | 5686065 | 1.5306321 | 5.8607593 | 1 |
| CCTGC | 5588010 | 1.4737737 | 5.490914 | 1 |
| CCCCT | 5696325 | 1.4719157 | 10.243916 | 1 |
| CCCAG | 5518760 | 1.4618052 | 7.540585 | 1 |
| GCCCA | 5448160 | 1.4431049 | 6.000983 | 1 |
| TGGCC | 5345950 | 1.4390765 | 6.136179 | 8 |
| CCTCC | 5567000 | 1.4384985 | 7.1445503 | 1 |
| CCCTG | 5411135 | 1.4271249 | 7.059545 | 1 |
| GGCCC | 3363815 | 1.4072589 | 7.6684375 | 9 |
| CTGGA | 7992740 | 1.3904208 | 5.047533 | 2 |
| CTCCA | 8212765 | 1.3714156 | 6.9973984 | 1 |
| CTCCC | 5234640 | 1.3526173 | 9.683284 | 1 |
| GCCCC | 3237895 | 1.3271476 | 8.294288 | 1 |
| CCCAC | 5096950 | 1.3227353 | 6.213172 | 1 |
| CCAGT | 7731940 | 1.3178124 | 6.004061 | 3 |
| TCCTG | 7482635 | 1.269829 | 6.718433 | 2 |
| CTCCT | 7543230 | 1.254188 | 9.004337 | 1 |
| CCCTC | 4816300 | 1.2445196 | 5.062514 | 1 |
| CGGGG | 2842465 | 1.238819 | 5.6945033 | 1 |
| CCTGT | 7283850 | 1.2360947 | 7.059528 | 3 |
| CCCCG | 2748480 | 1.1265463 | 9.189562 | 1 |
| CCCGG | 2514390 | 1.0519003 | 6.417818 | 1 |
| CTCGG | 3671300 | 0.98827744 | 6.7464514 | 1 |
| CCTCG | 3717800 | 0.9805272 | 5.90754 | 1 |
| CTCCG | 3110720 | 0.82041675 | 6.1263704 | 1 |
| CCCGC | 1992280 | 0.8165952 | 5.251235 | 1 |