##gff-version 3 ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= scaffold1 SAMTools SNP 18586 18586 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 18600 18600 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1 SAMTools SNP 18913 18913 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1 SAMTools SNP 21342 21342 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C84%2C0:99 scaffold1 SAMTools SNP 21381 21381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1 SAMTools SNP 23620 23620 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C254:99 scaffold1 SAMTools SNP 23662 23662 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C27%2C0:51 scaffold1 SAMTools SNP 24465 24465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C7%2C6%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.26%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1 SAMTools SNP 26292 26292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1 SAMTools SNP 26502 26502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C14%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.087%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1 SAMTools SNP 26967 26967 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1 SAMTools SNP 26982 26982 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1 SAMTools SNP 27100 27100 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.38%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1 SAMTools SNP 32384 32384 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 32386 32386 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1 SAMTools SNP 38464 38464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 53055 53055 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 69876 69876 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1 SAMTools SNP 73746 73746 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1 SAMTools SNP 73762 73762 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1 SAMTools SNP 74178 74178 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 74238 74238 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 204189 204189 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 207536 207536 31.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1 SAMTools SNP 208178 208178 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 208562 208562 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 208621 208621 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1 SAMTools SNP 209366 209366 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1 SAMTools SNP 209442 209442 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 209456 209456 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1 SAMTools SNP 237536 237536 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 241799 241799 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 241826 241826 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 336485 336485 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 341146 341146 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 341160 341160 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 12576 12576 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 12585 12585 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 13149 13149 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 14662 14662 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold100 SAMTools SNP 16263 16263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 58277 58277 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.00076%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C20:23 scaffold100 SAMTools SNP 61950 61950 91.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold100 SAMTools SNP 61994 61994 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 72716 72716 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold100 SAMTools SNP 86468 86468 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6716%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3068%2C361%2C1185%2C331%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-24%2C1%2C1%2C1.2e-57;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 86591 86591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7670%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3685%2C6%2C3928%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 90163 90163 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold100 SAMTools SNP 90498 90498 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold100 SAMTools SNP 91740 91740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C9%2C6%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.65%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold100 SAMTools SNP 92054 92054 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold100 SAMTools SNP 92593 92593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 93204 93204 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 93237 93237 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.32%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 93885 93885 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold100 SAMTools SNP 93897 93897 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold100 SAMTools SNP 94622 94622 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 94658 94658 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C121:99 scaffold100 SAMTools SNP 95511 95511 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C249:99 scaffold100 SAMTools SNP 95529 95529 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C250:99 scaffold100 SAMTools SNP 97823 97823 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C16%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0071%2C3.7e-09%2C1%2C9.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold100 SAMTools SNP 97852 97852 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 97870 97870 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C9.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 97879 97879 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C3%2C10%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.4%2C0.34%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold100 SAMTools SNP 98571 98571 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C14%2C3%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.00035%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold100 SAMTools SNP 98598 98598 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1.5e-06%2C0.26%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold100 SAMTools SNP 98613 98613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C6%2C46%2C8%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D6e-05%2C0.0016%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C35:38 scaffold100 SAMTools SNP 99058 99058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold100 SAMTools SNP 99897 99897 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C10%2C0%3BMQ%3D49%3BFQ%3D155%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold100 SAMTools SNP 100331 100331 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold100 SAMTools SNP 100347 100347 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.57%2C5.9e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold100 SAMTools SNP 113018 113018 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold100 SAMTools SNP 132573 132573 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold100 SAMTools SNP 135438 135438 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0032%2C0.04%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold100 SAMTools SNP 135826 135826 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C10%3BMQ%3D49%3BFQ%3D197%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C237:99 scaffold100 SAMTools SNP 138061 138061 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C10%3BMQ%3D49%3BFQ%3D169%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold100 SAMTools SNP 138066 138066 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C16%3BMQ%3D49%3BFQ%3D169%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold100 SAMTools SNP 140049 140049 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C22%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.22%2C5.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold100 SAMTools SNP 142297 142297 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C29:32 scaffold100 SAMTools SNP 142564 142564 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.37%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold100 SAMTools SNP 145096 145096 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold100 SAMTools SNP 160382 160382 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold100 SAMTools SNP 211027 211027 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 227075 227075 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold100 SAMTools SNP 236351 236351 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold100 SAMTools SNP 236735 236735 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D47%3BFQ%3D124%3BPV4%3D1%2C0.089%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C151:99 scaffold100 SAMTools SNP 236900 236900 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C1%2C5%3BMQ%3D44%3BFQ%3D90%3BPV4%3D0.65%2C1%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold100 SAMTools SNP 236904 236904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 236945 236945 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C2%2C7%3BMQ%3D44%3BFQ%3D86%3BPV4%3D0.63%2C0.099%2C0.18%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold100 SAMTools SNP 237011 237011 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold100 SAMTools SNP 237486 237486 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C5%3BMQ%3D37%3BFQ%3D15.1%3BPV4%3D1%2C0.045%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 237642 237642 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 238653 238653 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 238671 238671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 238806 238806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 239490 239490 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 239802 239802 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 243424 243424 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 243904 243904 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C76:30 scaffold100 SAMTools SNP 243921 243921 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 243922 243922 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 243970 243970 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold100 SAMTools SNP 262082 262082 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold100 SAMTools SNP 262233 262233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold100 SAMTools SNP 267052 267052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 268170 268170 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.53%2C8.7e-06%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold100 SAMTools SNP 268957 268957 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 268960 268960 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 269011 269011 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold100 SAMTools SNP 269943 269943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 269970 269970 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold100 SAMTools SNP 269991 269991 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold100 SAMTools SNP 270089 270089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 272732 272732 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold100 SAMTools SNP 273325 273325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold100 SAMTools SNP 273382 273382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold100 SAMTools SNP 273804 273804 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 274067 274067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold100 SAMTools SNP 274595 274595 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold100 SAMTools SNP 278123 278123 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 278180 278180 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 279346 279346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold100 SAMTools SNP 279385 279385 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C69:49 scaffold100 SAMTools SNP 280055 280055 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 280061 280061 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 280136 280136 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold100 SAMTools SNP 280141 280141 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold100 SAMTools SNP 280589 280589 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.025%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold100 SAMTools SNP 280903 280903 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C0.35%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold100 SAMTools SNP 280917 280917 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold100 SAMTools SNP 280965 280965 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold100 SAMTools SNP 282516 282516 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold100 SAMTools SNP 284614 284614 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.7e-15%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C152:41 scaffold100 SAMTools SNP 285328 285328 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold100 SAMTools SNP 285383 285383 32.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold100 SAMTools SNP 286661 286661 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold100 SAMTools SNP 287096 287096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 287790 287790 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D21%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C84%2C0:99 scaffold100 SAMTools SNP 296665 296665 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.3e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold100 SAMTools SNP 296671 296671 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.06%2C0.0012%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 297341 297341 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00019%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold100 SAMTools SNP 298439 298439 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 298472 298472 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold100 SAMTools SNP 298878 298878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 299212 299212 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold100 SAMTools SNP 299259 299259 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C65:68 scaffold100 SAMTools SNP 300410 300410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 301014 301014 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.4%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold100 SAMTools SNP 301029 301029 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 301035 301035 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 301077 301077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold100 SAMTools SNP 301858 301858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 301879 301879 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C4%3BMQ%3D44%3BFQ%3D105%3BPV4%3D0.33%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold100 SAMTools SNP 303030 303030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C13%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.73%2C0.34%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 303066 303066 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C29%2C3%3BMQ%3D44%3BFQ%3D205%3BPV4%3D1%2C0.17%2C0.19%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold100 SAMTools SNP 304760 304760 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D0.021%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold100 SAMTools SNP 304763 304763 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D47%3BFQ%3D88%3BPV4%3D0.044%2C0.0012%2C0.35%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold100 SAMTools SNP 333338 333338 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 333382 333382 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold100 SAMTools SNP 333695 333695 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 333728 333728 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.46%2C3.9e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C182:99 scaffold100 SAMTools SNP 333773 333773 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 338481 338481 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 339383 339383 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 340316 340316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold100 SAMTools SNP 340352 340352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold100 SAMTools SNP 340828 340828 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold100 SAMTools SNP 340834 340834 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold100 SAMTools SNP 341219 341219 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C51%2C0:82 scaffold100 SAMTools SNP 343975 343975 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 348171 348171 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 348529 348529 57.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold100 SAMTools SNP 348722 348722 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 348724 348724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 351708 351708 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 352036 352036 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold100 SAMTools SNP 355318 355318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold100 SAMTools SNP 356829 356829 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 356857 356857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.01%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 357295 357295 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 357322 357322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 357376 357376 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold100 SAMTools SNP 357397 357397 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.37%2C2.2e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold100 SAMTools SNP 357933 357933 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold100 SAMTools SNP 357969 357969 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold100 SAMTools SNP 357980 357980 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.35%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 359622 359622 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.029%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C136:57 scaffold100 SAMTools SNP 361646 361646 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 361696 361696 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold100 SAMTools SNP 361826 361826 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold100 SAMTools SNP 363139 363139 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2.1e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C241:84 scaffold100 SAMTools SNP 363145 363145 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C36%2C0:69 scaffold100 SAMTools SNP 365361 365361 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold100 SAMTools SNP 365859 365859 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold100 SAMTools SNP 366550 366550 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 366777 366777 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C248:99 scaffold100 SAMTools SNP 366822 366822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 367076 367076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 367091 367091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C22%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 367157 367157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold100 SAMTools SNP 367526 367526 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold100 SAMTools SNP 367559 367559 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold100 SAMTools SNP 367628 367628 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold100 SAMTools SNP 368460 368460 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.22%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C159:99 scaffold100 SAMTools SNP 368639 368639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold100 SAMTools SNP 368675 368675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C29%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.43%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold100 SAMTools SNP 369004 369004 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C4%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold100 SAMTools SNP 369077 369077 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold100 SAMTools SNP 372739 372739 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 372766 372766 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold100 SAMTools SNP 374709 374709 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold100 SAMTools SNP 374910 374910 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold100 SAMTools SNP 375911 375911 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 375916 375916 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 375970 375970 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 375979 375979 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 376465 376465 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C35%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C5e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C243:74 scaffold100 SAMTools SNP 377344 377344 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold100 SAMTools SNP 377349 377349 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold100 SAMTools SNP 377476 377476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C35%2C30%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C9.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377489 377489 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C118%2C18%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377679 377679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C174%2C34%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377778 377778 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold100 SAMTools SNP 403331 403331 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.38%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C232:99 scaffold100 SAMTools SNP 406974 406974 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold100 SAMTools SNP 409852 409852 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 413025 413025 163 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C255%2C0%2C188%2C255%2C185:99 scaffold100 SAMTools SNP 413055 413055 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C213%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 426713 426713 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold100 SAMTools SNP 427541 427541 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 427547 427547 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 435560 435560 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 435852 435852 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 440564 440564 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 440640 440640 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold100 SAMTools SNP 453216 453216 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold100 SAMTools SNP 455885 455885 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 458061 458061 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold100 SAMTools SNP 464372 464372 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 465710 465710 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 466246 466246 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 466811 466811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C14%2C34%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.38%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 467684 467684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C64%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold100 SAMTools SNP 467688 467688 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 470827 470827 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold100 SAMTools SNP 472038 472038 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.19%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold100 SAMTools SNP 521392 521392 82.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold100 SAMTools SNP 534837 534837 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold100 SAMTools SNP 535860 535860 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold100 SAMTools SNP 546676 546676 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold100 SAMTools SNP 546969 546969 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold100 SAMTools SNP 546973 546973 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold100 SAMTools SNP 546984 546984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 549925 549925 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 549930 549930 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 550340 550340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 551913 551913 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold100 SAMTools SNP 551928 551928 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold100 SAMTools SNP 554172 554172 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 554280 554280 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold100 SAMTools SNP 554295 554295 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold100 SAMTools SNP 554789 554789 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 556154 556154 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 556538 556538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 556555 556555 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.27%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold100 SAMTools SNP 557475 557475 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C110:99 scaffold100 SAMTools SNP 557763 557763 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold100 SAMTools SNP 560962 560962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.09%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold100 SAMTools SNP 563536 563536 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 564879 564879 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold100 SAMTools SNP 564888 564888 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold100 SAMTools SNP 566925 566925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 566996 566996 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold100 SAMTools SNP 567178 567178 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold100 SAMTools SNP 567691 567691 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.048%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C145:99 scaffold100 SAMTools SNP 567695 567695 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C167:99 scaffold100 SAMTools SNP 567904 567904 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 568689 568689 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold100 SAMTools SNP 568797 568797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 570327 570327 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold100 SAMTools SNP 570565 570565 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold100 SAMTools SNP 570802 570802 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C246:99 scaffold100 SAMTools SNP 571154 571154 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0:45 scaffold100 SAMTools SNP 571234 571234 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold100 SAMTools SNP 571563 571563 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 571683 571683 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold100 SAMTools SNP 571706 571706 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.18%2C0.0056%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold100 SAMTools SNP 572413 572413 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold100 SAMTools SNP 572447 572447 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold100 SAMTools SNP 611072 611072 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold100 SAMTools SNP 611231 611231 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.45%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold100 SAMTools SNP 611243 611243 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C2.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold100 SAMTools SNP 611356 611356 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C13%2C29%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.64%2C1.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold100 SAMTools SNP 611749 611749 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.52%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C185:64 scaffold100 SAMTools SNP 611974 611974 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 615123 615123 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold100 SAMTools SNP 627607 627607 134 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C39%2C24%2C166%2C0%2C160:27 scaffold100 SAMTools SNP 627628 627628 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D160%3BPV4%3D2.6e-05%2C0.34%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold100 SAMTools SNP 627631 627631 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C0%2C20%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1.1e-06%2C0.057%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold100 SAMTools SNP 628083 628083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C18%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C0:67 scaffold100 SAMTools SNP 628098 628098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold100 SAMTools SNP 628230 628230 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold100 SAMTools SNP 628314 628314 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C33%2C6%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-13%2C4e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 628663 628663 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C15%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold100 SAMTools SNP 628982 628982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold100 SAMTools SNP 629017 629017 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0035%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 629048 629048 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.27%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold100 SAMTools SNP 629102 629102 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-08%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 630337 630337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 630349 630349 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold100 SAMTools SNP 630378 630378 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold100 SAMTools SNP 630415 630415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold100 SAMTools SNP 630758 630758 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold100 SAMTools SNP 632187 632187 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold100 SAMTools SNP 632205 632205 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold100 SAMTools SNP 632302 632302 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.18%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold100 SAMTools SNP 632317 632317 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C0.23%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C127:63 scaffold100 SAMTools SNP 635132 635132 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 635177 635177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C46%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold100 SAMTools SNP 635481 635481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 639275 639275 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 639326 639326 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.4%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C45:48 scaffold100 SAMTools SNP 639781 639781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C54%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold100 SAMTools SNP 639823 639823 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 640137 640137 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C143:51 scaffold100 SAMTools SNP 640146 640146 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.00099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold100 SAMTools SNP 640164 640164 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 640335 640335 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold100 SAMTools SNP 640906 640906 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D9.1e-06%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold100 SAMTools SNP 641129 641129 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold100 SAMTools SNP 641213 641213 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C6%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.012%2C0.092%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold100 SAMTools SNP 641869 641869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold100 SAMTools SNP 646050 646050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold100 SAMTools SNP 646981 646981 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 647056 647056 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 648119 648119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 648185 648185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 651672 651672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 652789 652789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C46%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 652825 652825 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C2%2C14%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.27%2C7.9e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold100 SAMTools SNP 653469 653469 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.8e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold100 SAMTools SNP 653499 653499 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C166:64 scaffold100 SAMTools SNP 656035 656035 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C183%2C113%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C5.2e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 660035 660035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C228%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 660044 660044 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C59%2C23%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D2.6e-09%2C6.9e-13%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold100 SAMTools SNP 660072 660072 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D0.42%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C65:68 scaffold100 SAMTools SNP 660083 660083 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold100 SAMTools SNP 667366 667366 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold100 SAMTools SNP 667387 667387 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold100 SAMTools SNP 669029 669029 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold100 SAMTools SNP 669090 669090 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold100 SAMTools SNP 669100 669100 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C42%2C0:81 scaffold100 SAMTools SNP 670596 670596 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold100 SAMTools SNP 670762 670762 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C42%2C0:81 scaffold100 SAMTools SNP 671258 671258 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C42%2C0:81 scaffold100 SAMTools SNP 676697 676697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 677060 677060 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C17%2C47%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 677358 677358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 678862 678862 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 678874 678874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 679259 679259 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C38%2C14%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.56%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 681007 681007 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold100 SAMTools SNP 681232 681232 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C15%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C0.053%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 681240 681240 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C18%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-05%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 681320 681320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C30%2C65%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.7e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 683104 683104 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.44%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold100 SAMTools SNP 683194 683194 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold100 SAMTools SNP 683203 683203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 683682 683682 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C9%2C21%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold100 SAMTools SNP 684227 684227 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.7e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold100 SAMTools SNP 684476 684476 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.34%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold100 SAMTools SNP 684786 684786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C9%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 686170 686170 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 686184 686184 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 686442 686442 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold100 SAMTools SNP 687146 687146 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C0%2C10%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.57%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold100 SAMTools SNP 687149 687149 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 687809 687809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1.6e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 687893 687893 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold100 SAMTools SNP 687971 687971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C24%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688149 688149 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688227 688227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C18%2C73%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688639 688639 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold100 SAMTools SNP 688916 688916 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.015%2C0.044%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C200:99 scaffold100 SAMTools SNP 688997 688997 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 689141 689141 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C13%2C54%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 689189 689189 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C59%2C6%2C31%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.8%2C1e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold100 SAMTools SNP 689343 689343 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C2.6e-16%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold100 SAMTools SNP 689749 689749 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.0036%2C0.044%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold100 SAMTools SNP 689894 689894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold100 SAMTools SNP 690214 690214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 690292 690292 84.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold100 SAMTools SNP 690379 690379 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.25%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold100 SAMTools SNP 691408 691408 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C241:99 scaffold100 SAMTools SNP 692626 692626 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C1%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.46%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold100 SAMTools SNP 692629 692629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 692668 692668 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold100 SAMTools SNP 693497 693497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 694239 694239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold100 SAMTools SNP 696694 696694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 697071 697071 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold100 SAMTools SNP 697140 697140 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold100 SAMTools SNP 697334 697334 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold100 SAMTools SNP 697391 697391 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold100 SAMTools SNP 697460 697460 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C0.085%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold100 SAMTools SNP 697493 697493 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold100 SAMTools SNP 697502 697502 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C146:99 scaffold100 SAMTools SNP 697645 697645 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.45%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C146:99 scaffold100 SAMTools SNP 697735 697735 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.64%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold100 SAMTools SNP 697759 697759 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.46%2C0.0023%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold100 SAMTools SNP 697893 697893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C36%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00068%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold100 SAMTools SNP 698275 698275 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C9%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0077%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold100 SAMTools SNP 698292 698292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00045%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 699048 699048 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 699182 699182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 700259 700259 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 701868 701868 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.32%2C0.0056%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold100 SAMTools SNP 701877 701877 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C0%2C13%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.014%2C1.7e-05%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 702322 702322 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold100 SAMTools SNP 702328 702328 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold100 SAMTools SNP 703854 703854 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 704145 704145 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 704373 704373 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 704720 704720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 704738 704738 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 704828 704828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 704834 704834 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 706036 706036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold100 SAMTools SNP 707167 707167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C33%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold100 SAMTools SNP 707656 707656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C27%2C39%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 707782 707782 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C8%2C31%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.81%2C3.4e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold100 SAMTools SNP 708068 708068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 708102 708102 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 708424 708424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C2%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.19%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold100 SAMTools SNP 709133 709133 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C255%2C0:99 scaffold100 SAMTools SNP 709812 709812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold100 SAMTools SNP 710250 710250 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.52%2C0.25%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C219:99 scaffold100 SAMTools SNP 710722 710722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 710911 710911 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C9%2C89%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711320 711320 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C31%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711537 711537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711808 711808 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold100 SAMTools SNP 712323 712323 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.48%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C249:99 scaffold100 SAMTools SNP 714298 714298 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.1%2C2.3e-05%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold100 SAMTools SNP 714681 714681 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold100 SAMTools SNP 717906 717906 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold100 SAMTools SNP 718150 718150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 718707 718707 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C2%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0023%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold100 SAMTools SNP 720852 720852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C25%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold100 SAMTools SNP 722383 722383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 722497 722497 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C84%2C0:99 scaffold100 SAMTools SNP 723133 723133 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold100 SAMTools SNP 723141 723141 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C143:99 scaffold100 SAMTools SNP 727331 727331 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold100 SAMTools SNP 727802 727802 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold100 SAMTools SNP 729341 729341 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold100 SAMTools SNP 759700 759700 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold100 SAMTools SNP 776488 776488 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold100 SAMTools SNP 780771 780771 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold100 SAMTools SNP 795095 795095 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D998%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C550%2C350%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D4.7e-173%2C4.2e-143%2C1%2C3.2e-157;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold100 SAMTools SNP 795098 795098 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D849%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C553%2C240%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D5.6e-152%2C1.4e-192%2C1%2C7.8e-146;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold100 SAMTools SNP 795154 795154 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D744%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C422%2C71%2C185%3BMQ%3D50%3BFQ%3D201%3BPV4%3D3.5e-06%2C3.1e-227%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold100 SAMTools SNP 795261 795261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C81%2C64%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-05%2C1%2C1%2C8.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 795306 795306 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C112%2C97%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 797349 797349 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4356%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2148%2C131%2C1933%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 797373 797373 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4366%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1919%2C158%2C1192%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C5.9e-101%2C1%2C4.7e-74;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 803557 803557 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 816781 816781 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C45%2C0:87 scaffold100 SAMTools SNP 1009059 1009059 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold100 SAMTools SNP 1047765 1047765 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold100 SAMTools SNP 1048274 1048274 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1048295 1048295 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold100 SAMTools SNP 1048378 1048378 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold100 SAMTools SNP 1048957 1048957 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold100 SAMTools SNP 1049273 1049273 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold100 SAMTools SNP 1050074 1050074 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold100 SAMTools SNP 1075878 1075878 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 1076325 1076325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 1101416 1101416 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold100 SAMTools SNP 1106680 1106680 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C33%2C0:61 scaffold100 SAMTools SNP 1106737 1106737 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold100 SAMTools SNP 1106928 1106928 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1107075 1107075 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1108414 1108414 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold100 SAMTools SNP 1109476 1109476 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold100 SAMTools SNP 1109491 1109491 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold100 SAMTools SNP 1110314 1110314 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold100 SAMTools SNP 1110317 1110317 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C94:40 scaffold100 SAMTools SNP 1110600 1110600 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold100 SAMTools SNP 1110641 1110641 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold100 SAMTools SNP 1110854 1110854 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1110867 1110867 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1111503 1111503 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1112493 1112493 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 1112562 1112562 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 1112586 1112586 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1112777 1112777 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold100 SAMTools SNP 1115461 1115461 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold100 SAMTools SNP 1115602 1115602 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold100 SAMTools SNP 1115632 1115632 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 1118218 1118218 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1118220 1118220 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 25739 25739 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 25760 25760 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 108316 108316 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1000 SAMTools SNP 122970 122970 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C18%2C0:33 scaffold1000 SAMTools SNP 134404 134404 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C57%2C0:99 scaffold1000 SAMTools SNP 134714 134714 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 134755 134755 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1000 SAMTools SNP 134759 134759 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1000 SAMTools SNP 135421 135421 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 136850 136850 62.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold1000 SAMTools SNP 136859 136859 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1000 SAMTools SNP 136889 136889 88.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold1000 SAMTools SNP 136982 136982 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1000 SAMTools SNP 139063 139063 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 139087 139087 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 139135 139135 56.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold1000 SAMTools SNP 140527 140527 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1000 SAMTools SNP 140565 140565 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 146256 146256 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 148802 148802 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 148810 148810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 149150 149150 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C17%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1000 SAMTools SNP 149624 149624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C70%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1000 SAMTools SNP 150527 150527 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.18%2C1%2C1%2C1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1000 SAMTools SNP 150908 150908 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C30%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1000 SAMTools SNP 155015 155015 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C11%3BMQ%3D36%3BFQ%3D7.8%3BPV4%3D1%2C0.0076%2C0.0037%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C227:34 scaffold1000 SAMTools SNP 156129 156129 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C11%2C2%3BMQ%3D43%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C137:99 scaffold1000 SAMTools SNP 156130 156130 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C2%3BMQ%3D41%3BFQ%3D30%3BPV4%3D0.53%2C1%2C0.08%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C174:60 scaffold1000 SAMTools SNP 156633 156633 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 156660 156660 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1000 SAMTools SNP 159662 159662 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 159674 159674 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D40%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C188:44 scaffold1000 SAMTools SNP 159829 159829 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C0%2C31%2C0%3BMQ%3D48%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C254:99 scaffold1000 SAMTools SNP 159865 159865 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C262%2C1%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 171043 171043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C103%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 173009 173009 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 173253 173253 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1000 SAMTools SNP 178761 178761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C50%2C15%2C19%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.24%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 179109 179109 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C52%2C0%2C19%3BMQ%3D49%3BFQ%3D105%3BPV4%3D0.0026%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1000 SAMTools SNP 179463 179463 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C60%2C84%2C9%3BMQ%3D35%3BFQ%3D132%3BPV4%3D2.5e-11%2C0.24%2C5.1e-24%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1000 SAMTools SNP 183761 183761 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D640%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D422%2C83%2C41%2C94%3BMQ%3D46%3BFQ%3D101%3BPV4%3D1.4e-31%2C1.7e-102%2C2.8e-129%2C2.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1000 SAMTools SNP 187822 187822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C315%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 187907 187907 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C52%2C38%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 188670 188670 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C160%2C317%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.34%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190457 190457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D657%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D306%2C91%2C172%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.47%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 190726 190726 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D700%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190756 190756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190804 190804 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D543%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C330%2C0%2C190%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 191101 191101 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1000 SAMTools SNP 193014 193014 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C27%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C245:99 scaffold1000 SAMTools SNP 193107 193107 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 193130 193130 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 193502 193502 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C105%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.00041%2C0.041%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C73:76 scaffold1000 SAMTools SNP 193506 193506 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C34%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.29%2C0.057%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1000 SAMTools SNP 193507 193507 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.55%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1000 SAMTools SNP 194853 194853 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1000 SAMTools SNP 194859 194859 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1000 SAMTools SNP 194890 194890 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C159:62 scaffold1000 SAMTools SNP 194894 194894 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.25%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C137:55 scaffold1000 SAMTools SNP 202723 202723 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 205691 205691 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 205715 205715 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 205976 205976 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 206168 206168 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.018%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C201:99 scaffold1000 SAMTools SNP 206349 206349 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1000 SAMTools SNP 206370 206370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1000 SAMTools SNP 206698 206698 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.2e-32%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1000 SAMTools SNP 206797 206797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 206954 206954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1000 SAMTools SNP 207260 207260 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C157%2C0:99 scaffold1000 SAMTools SNP 207657 207657 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 208203 208203 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D35%3BPV4%3D3.4e-05%2C5.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1000 SAMTools SNP 208331 208331 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.0004%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C236:93 scaffold1000 SAMTools SNP 208504 208504 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C76%2C21%2C23%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0024%2C3.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1000 SAMTools SNP 208586 208586 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 208831 208831 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1000 SAMTools SNP 210098 210098 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1000 SAMTools SNP 211311 211311 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.16%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1000 SAMTools SNP 212782 212782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D48%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1000 SAMTools SNP 212815 212815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1000 SAMTools SNP 213831 213831 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C12%2C1%3BMQ%3D49%3BFQ%3D156%3BPV4%3D0.41%2C0.45%2C0.053%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1000 SAMTools SNP 214381 214381 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1000 SAMTools SNP 214610 214610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1000 SAMTools SNP 214628 214628 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 214860 214860 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C140:99 scaffold1000 SAMTools SNP 214875 214875 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.18%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C145:99 scaffold1000 SAMTools SNP 214929 214929 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1000 SAMTools SNP 216423 216423 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1000 SAMTools SNP 216438 216438 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1000 SAMTools SNP 216495 216495 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1000 SAMTools SNP 216498 216498 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1000 SAMTools SNP 216916 216916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1000 SAMTools SNP 217620 217620 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.45%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1000 SAMTools SNP 217622 217622 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1000 SAMTools SNP 217640 217640 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 217667 217667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 217679 217679 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.099%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1000 SAMTools SNP 217856 217856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C24%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.43%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1000 SAMTools SNP 217937 217937 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold1000 SAMTools SNP 218193 218193 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1000 SAMTools SNP 218214 218214 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1000 SAMTools SNP 218244 218244 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1000 SAMTools SNP 218292 218292 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.11%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1000 SAMTools SNP 218295 218295 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.11%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1000 SAMTools SNP 218653 218653 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1000 SAMTools SNP 218680 218680 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1000 SAMTools SNP 218787 218787 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 218798 218798 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1000 SAMTools SNP 219190 219190 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 219223 219223 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1000 SAMTools SNP 220522 220522 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1000 SAMTools SNP 221390 221390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C37%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 221401 221401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C5%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1000 SAMTools SNP 221554 221554 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C175%2C0:99 scaffold1000 SAMTools SNP 221824 221824 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 222245 222245 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1000 SAMTools SNP 222328 222328 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1000 SAMTools SNP 222330 222330 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1000 SAMTools SNP 222343 222343 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 224434 224434 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1000 SAMTools SNP 224621 224621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1000 SAMTools SNP 226402 226402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1000 SAMTools SNP 226492 226492 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.48%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1000 SAMTools SNP 226669 226669 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 230387 230387 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold1000 SAMTools SNP 235714 235714 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1000 SAMTools SNP 235740 235740 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D28%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C123%2C0:99 scaffold1000 SAMTools SNP 236446 236446 6.97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C57%2C0:50 scaffold1000 SAMTools SNP 236899 236899 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1000 SAMTools SNP 237556 237556 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1000 SAMTools SNP 237598 237598 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D40%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1000 SAMTools SNP 237856 237856 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C45%2C0:87 scaffold1000 SAMTools SNP 238792 238792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 240294 240294 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1000 SAMTools SNP 240498 240498 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1000 SAMTools SNP 240531 240531 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1000 SAMTools SNP 240827 240827 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.051%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C198:54 scaffold1000 SAMTools SNP 240842 240842 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1000 SAMTools SNP 240849 240849 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold1000 SAMTools SNP 242086 242086 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1000 SAMTools SNP 242511 242511 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.27%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C93:96 scaffold1000 SAMTools SNP 243081 243081 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.037%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C201:96 scaffold1000 SAMTools SNP 243090 243090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1000 SAMTools SNP 244902 244902 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1000 SAMTools SNP 246683 246683 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1000 SAMTools SNP 246684 246684 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1000 SAMTools SNP 249954 249954 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 251399 251399 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C11%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C5.9e-37%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1000 SAMTools SNP 252631 252631 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1000 SAMTools SNP 252652 252652 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1000 SAMTools SNP 252819 252819 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1000 SAMTools SNP 252868 252868 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 256154 256154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1476%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D615%2C4%2C850%2C7%3BMQ%3D49%3BFQ%3D209%3BPV4%3D0.77%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1000 SAMTools SNP 257371 257371 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1000 SAMTools SNP 259935 259935 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C4%2C76%2C4%3BMQ%3D45%3BFQ%3D213%3BPV4%3D0.72%2C1%2C0.026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1000 SAMTools SNP 265452 265452 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2271%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D402%2C860%2C374%2C620%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0043%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 266232 266232 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2137%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D708%2C852%2C0%2C571%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D2.9e-122%2C1.3e-177%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1000 SAMTools SNP 270154 270154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1000 SAMTools SNP 270176 270176 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 272577 272577 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C35%2C25%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.45%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 273604 273604 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 274432 274432 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1000 SAMTools SNP 279747 279747 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 279932 279932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C25%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1000 SAMTools SNP 280156 280156 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C255%2C0:99 scaffold1000 SAMTools SNP 280552 280552 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C107%2C34%2C80%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.79%2C1e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1000 SAMTools SNP 280595 280595 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C56%2C10%2C36%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.23%2C5.9e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1000 SAMTools SNP 280897 280897 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.35%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1000 SAMTools SNP 288958 288958 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1000 SAMTools SNP 288960 288960 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1000 SAMTools SNP 289013 289013 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1000 SAMTools SNP 290276 290276 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 292993 292993 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1000 SAMTools SNP 293732 293732 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1000 SAMTools SNP 293813 293813 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold1000 SAMTools SNP 295498 295498 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1000 SAMTools SNP 295555 295555 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1000 SAMTools SNP 295961 295961 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 296222 296222 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1000 SAMTools SNP 296562 296562 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1000 SAMTools SNP 296579 296579 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 296713 296713 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 297394 297394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 297668 297668 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C21%2C0:39 scaffold1000 SAMTools SNP 297804 297804 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1000 SAMTools SNP 298322 298322 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1000 SAMTools SNP 298343 298343 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 298359 298359 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1000 SAMTools SNP 298817 298817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 298856 298856 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1000 SAMTools SNP 299034 299034 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1000 SAMTools SNP 299313 299313 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1000 SAMTools SNP 299505 299505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 299520 299520 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1000 SAMTools SNP 299589 299589 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.092%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1000 SAMTools SNP 300118 300118 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1000 SAMTools SNP 300202 300202 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C127:62 scaffold1000 SAMTools SNP 300246 300246 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1000 SAMTools SNP 300579 300579 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 300870 300870 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 302154 302154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 302172 302172 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 305910 305910 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1000 SAMTools SNP 306717 306717 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C27%2C24%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 306729 306729 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 306969 306969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C69%2C14%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 307181 307181 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C22%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1000 SAMTools SNP 307189 307189 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C4%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.68%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1000 SAMTools SNP 307270 307270 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 307629 307629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1000 SAMTools SNP 308179 308179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 313469 313469 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold1000 SAMTools SNP 313679 313679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1000 SAMTools SNP 313799 313799 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1000 SAMTools SNP 316251 316251 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C39%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold1000 SAMTools SNP 316666 316666 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00054%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 318100 318100 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7.3e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C202:30 scaffold1000 SAMTools SNP 318431 318431 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1000 SAMTools SNP 318833 318833 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C13%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.45%2C2e-19%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1000 SAMTools SNP 318869 318869 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.19%2C0.07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1000 SAMTools SNP 329704 329704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C16%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1000 SAMTools SNP 338418 338418 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1000 SAMTools SNP 339738 339738 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 339747 339747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 340512 340512 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 340521 340521 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 340548 340548 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 340552 340552 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 342497 342497 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 342522 342522 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1000 SAMTools SNP 343233 343233 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1000 SAMTools SNP 343287 343287 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0114%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 343327 343327 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 344200 344200 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 344214 344214 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 344233 344233 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1000 SAMTools SNP 345489 345489 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 345492 345492 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 345738 345738 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1000 SAMTools SNP 345795 345795 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 346013 346013 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 3849 3849 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 3922 3922 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1001 SAMTools SNP 4322 4322 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1001 SAMTools SNP 6092 6092 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1001 SAMTools SNP 6094 6094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1001 SAMTools SNP 6618 6618 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.029%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1001 SAMTools SNP 6722 6722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1001 SAMTools SNP 7121 7121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1001 SAMTools SNP 7867 7867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C39%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1001 SAMTools SNP 7892 7892 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1001 SAMTools SNP 8062 8062 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 8084 8084 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 8385 8385 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8392 8392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8424 8424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8455 8455 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8746 8746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1001 SAMTools SNP 8889 8889 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.55%2C0.00055%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1001 SAMTools SNP 11066 11066 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1001 SAMTools SNP 11328 11328 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 14988 14988 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C68:52 scaffold1001 SAMTools SNP 15203 15203 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1001 SAMTools SNP 34820 34820 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1001 SAMTools SNP 46176 46176 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 46206 46206 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1001 SAMTools SNP 46645 46645 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D41%3BFQ%3D53.8%3BPV4%3D1%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C82:84 scaffold1001 SAMTools SNP 46847 46847 52.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1001 SAMTools SNP 46945 46945 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 47113 47113 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1001 SAMTools SNP 47140 47140 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1001 SAMTools SNP 47612 47612 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold1001 SAMTools SNP 47988 47988 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 48004 48004 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 48120 48120 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C5e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1001 SAMTools SNP 48480 48480 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1001 SAMTools SNP 48666 48666 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 48702 48702 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1001 SAMTools SNP 48949 48949 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1001 SAMTools SNP 49393 49393 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 49708 49708 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1001 SAMTools SNP 50179 50179 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1001 SAMTools SNP 50825 50825 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C3.1e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold1001 SAMTools SNP 50865 50865 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1001 SAMTools SNP 54791 54791 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1001 SAMTools SNP 54896 54896 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1001 SAMTools SNP 57505 57505 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1001 SAMTools SNP 57557 57557 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C34:37 scaffold1001 SAMTools SNP 58323 58323 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1001 SAMTools SNP 58476 58476 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1001 SAMTools SNP 58479 58479 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1001 SAMTools SNP 58484 58484 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.36%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C78:39 scaffold1001 SAMTools SNP 58880 58880 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D46%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C159:82 scaffold1001 SAMTools SNP 59306 59306 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 59753 59753 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C64:64 scaffold1001 SAMTools SNP 59974 59974 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 60019 60019 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1001 SAMTools SNP 60075 60075 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 60080 60080 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1001 SAMTools SNP 61175 61175 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C24:27 scaffold1001 SAMTools SNP 61752 61752 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1001 SAMTools SNP 62044 62044 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1001 SAMTools SNP 62216 62216 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 62232 62232 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold1001 SAMTools SNP 62902 62902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C10%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1001 SAMTools SNP 62975 62975 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 63032 63032 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 63068 63068 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 63732 63732 59.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1001 SAMTools SNP 63861 63861 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1001 SAMTools SNP 64209 64209 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1001 SAMTools SNP 64583 64583 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1001 SAMTools SNP 72666 72666 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1001 SAMTools SNP 72707 72707 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1001 SAMTools SNP 72732 72732 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0128%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C240:34 scaffold1001 SAMTools SNP 73909 73909 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.036%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C128:30 scaffold1001 SAMTools SNP 73947 73947 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1001 SAMTools SNP 75315 75315 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1001 SAMTools SNP 78000 78000 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1001 SAMTools SNP 78614 78614 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1001 SAMTools SNP 79365 79365 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1001 SAMTools SNP 79415 79415 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1001 SAMTools SNP 80115 80115 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 81171 81171 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 83421 83421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 83982 83982 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1001 SAMTools SNP 89981 89981 13.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.00098%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C5%2C0:8 scaffold1001 SAMTools SNP 111977 111977 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1001 SAMTools SNP 116042 116042 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1001 SAMTools SNP 116137 116137 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 116158 116158 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 116863 116863 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 118846 118846 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 118862 118862 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1001 SAMTools SNP 118967 118967 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 121325 121325 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1001 SAMTools SNP 121821 121821 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold1001 SAMTools SNP 121829 121829 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1001 SAMTools SNP 121987 121987 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1001 SAMTools SNP 122068 122068 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1001 SAMTools SNP 122356 122356 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D25%3BFQ%3D-29%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C2%2C0:5 scaffold1001 SAMTools SNP 122818 122818 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D-3.09%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C27:30 scaffold1001 SAMTools SNP 123228 123228 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 127503 127503 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 127650 127650 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1001 SAMTools SNP 127665 127665 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1001 SAMTools SNP 127682 127682 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1001 SAMTools SNP 128270 128270 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1001 SAMTools SNP 128320 128320 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.17%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1001 SAMTools SNP 128358 128358 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1001 SAMTools SNP 132325 132325 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 132393 132393 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 133959 133959 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 134260 134260 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1001 SAMTools SNP 134567 134567 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1001 SAMTools SNP 134600 134600 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C231:99 scaffold1001 SAMTools SNP 135014 135014 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.19%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold1001 SAMTools SNP 135057 135057 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 146467 146467 22.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1001 SAMTools SNP 146943 146943 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1001 SAMTools SNP 148389 148389 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1001 SAMTools SNP 151016 151016 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1002 SAMTools SNP 2005 2005 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1002 SAMTools SNP 2026 2026 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1002 SAMTools SNP 2052 2052 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 11379 11379 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold1002 SAMTools SNP 11547 11547 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C84:87 scaffold1002 SAMTools SNP 12386 12386 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C48%2C0:93 scaffold1002 SAMTools SNP 13559 13559 12.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1002 SAMTools SNP 14070 14070 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold1002 SAMTools SNP 15696 15696 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 24839 24839 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1002 SAMTools SNP 24878 24878 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 29684 29684 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1002 SAMTools SNP 29776 29776 51.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1002 SAMTools SNP 30695 30695 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 32000 32000 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1002 SAMTools SNP 32167 32167 59.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1002 SAMTools SNP 32300 32300 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1002 SAMTools SNP 32317 32317 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1002 SAMTools SNP 33719 33719 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1002 SAMTools SNP 33952 33952 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.27%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C248:99 scaffold1002 SAMTools SNP 43643 43643 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1004 SAMTools SNP 23771 23771 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 24387 24387 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 24780 24780 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 27533 27533 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1004 SAMTools SNP 27563 27563 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1004 SAMTools SNP 28911 28911 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1004 SAMTools SNP 28929 28929 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1004 SAMTools SNP 29529 29529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 51702 51702 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 56753 56753 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1004 SAMTools SNP 56783 56783 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1004 SAMTools SNP 57504 57504 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1004 SAMTools SNP 57615 57615 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C226:99 scaffold1004 SAMTools SNP 57627 57627 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 59527 59527 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D0.43%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C120:99 scaffold1004 SAMTools SNP 59530 59530 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C175:79 scaffold1004 SAMTools SNP 59536 59536 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.37%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C158:91 scaffold1004 SAMTools SNP 59574 59574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1004 SAMTools SNP 59575 59575 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1004 SAMTools SNP 64873 64873 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1004 SAMTools SNP 66899 66899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87000 87000 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87013 87013 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87022 87022 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 87504 87504 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1004 SAMTools SNP 87510 87510 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1004 SAMTools SNP 87803 87803 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 91136 91136 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 93548 93548 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1004 SAMTools SNP 97580 97580 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1004 SAMTools SNP 107489 107489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1004 SAMTools SNP 107659 107659 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 116222 116222 28.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1004 SAMTools SNP 116315 116315 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C33%2C0:63 scaffold1004 SAMTools SNP 130527 130527 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1004 SAMTools SNP 130672 130672 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1004 SAMTools SNP 131558 131558 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1004 SAMTools SNP 131566 131566 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 131752 131752 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 131846 131846 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 146190 146190 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 146387 146387 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1004 SAMTools SNP 146433 146433 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 147174 147174 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 147258 147258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 203241 203241 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1004 SAMTools SNP 205213 205213 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C48%2C0:93 scaffold1004 SAMTools SNP 208780 208780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1004 SAMTools SNP 208880 208880 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 208901 208901 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 211499 211499 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C40%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212042 212042 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212847 212847 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C5%2C7%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0098%2C0.021%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C233:99 scaffold1004 SAMTools SNP 212862 212862 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212864 212864 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.19%2C2.7e-05%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1004 SAMTools SNP 216831 216831 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00019%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C143:49 scaffold1004 SAMTools SNP 216961 216961 92.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1004 SAMTools SNP 267426 267426 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 267733 267733 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 278811 278811 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1004 SAMTools SNP 279438 279438 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1004 SAMTools SNP 288563 288563 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C82:85 scaffold1004 SAMTools SNP 288816 288816 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1004 SAMTools SNP 289117 289117 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1004 SAMTools SNP 289626 289626 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold1004 SAMTools SNP 289672 289672 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.1e-15%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C231:41 scaffold1004 SAMTools SNP 290376 290376 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.048%2C0.084%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C187:99 scaffold1004 SAMTools SNP 290377 290377 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.048%2C0.0021%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C187:79 scaffold1004 SAMTools SNP 291691 291691 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00018%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C110:48 scaffold1004 SAMTools SNP 291808 291808 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold1004 SAMTools SNP 292270 292270 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1004 SAMTools SNP 292295 292295 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1004 SAMTools SNP 292371 292371 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.37%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C158:39 scaffold1004 SAMTools SNP 292532 292532 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1004 SAMTools SNP 293216 293216 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 298527 298527 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 302659 302659 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 303181 303181 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 303245 303245 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 303250 303250 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1004 SAMTools SNP 304832 304832 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1004 SAMTools SNP 304834 304834 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 304843 304843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 307019 307019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1004 SAMTools SNP 307070 307070 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1004 SAMTools SNP 307901 307901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1004 SAMTools SNP 307964 307964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1004 SAMTools SNP 308006 308006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 310915 310915 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 311948 311948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 312512 312512 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 314251 314251 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold1004 SAMTools SNP 314263 314263 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 314389 314389 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1004 SAMTools SNP 314397 314397 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1004 SAMTools SNP 314880 314880 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.023%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1004 SAMTools SNP 314904 314904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1004 SAMTools SNP 316266 316266 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.11%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1004 SAMTools SNP 317823 317823 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 317858 317858 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C227:28 scaffold1004 SAMTools SNP 317951 317951 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C0.34%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold1004 SAMTools SNP 318421 318421 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C6%3BMQ%3D44%3BFQ%3D157%3BPV4%3D0.0046%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1004 SAMTools SNP 318788 318788 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C44%2C43%2C5%3BMQ%3D42%3BFQ%3D169%3BPV4%3D4.4e-06%2C1%2C0.12%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1004 SAMTools SNP 319496 319496 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C32%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1004 SAMTools SNP 319538 319538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C30%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1004 SAMTools SNP 320154 320154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 320175 320175 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold1004 SAMTools SNP 320253 320253 120 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C102%2C185%2C0%2C176:33 scaffold1004 SAMTools SNP 320640 320640 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C36%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 322129 322129 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C15%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.43%2C0.23%2C0.068%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 403082 403082 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 403976 403976 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 407802 407802 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C33%2C0:63 scaffold1004 SAMTools SNP 420446 420446 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 421416 421416 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1004 SAMTools SNP 421449 421449 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 422035 422035 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 422039 422039 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 423153 423153 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 423771 423771 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.25%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C224:99 scaffold1004 SAMTools SNP 424085 424085 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C205:99 scaffold1004 SAMTools SNP 424091 424091 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C102:99 scaffold1004 SAMTools SNP 430693 430693 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C31%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00047%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1004 SAMTools SNP 430874 430874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 430929 430929 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1004 SAMTools SNP 430953 430953 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1004 SAMTools SNP 431630 431630 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1004 SAMTools SNP 431684 431684 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 432264 432264 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1004 SAMTools SNP 432749 432749 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold1004 SAMTools SNP 432801 432801 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1004 SAMTools SNP 433123 433123 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1004 SAMTools SNP 433124 433124 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1004 SAMTools SNP 433141 433141 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.27%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1004 SAMTools SNP 433670 433670 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.16%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C236:99 scaffold1004 SAMTools SNP 438381 438381 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C6%3BMQ%3D36%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C181:99 scaffold1004 SAMTools SNP 438616 438616 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1004 SAMTools SNP 439542 439542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 440675 440675 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C16%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1004 SAMTools SNP 444928 444928 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.072%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C238:99 scaffold1004 SAMTools SNP 449782 449782 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.24%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C245:99 scaffold1004 SAMTools SNP 450872 450872 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1004 SAMTools SNP 451771 451771 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1004 SAMTools SNP 452960 452960 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1004 SAMTools SNP 455734 455734 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.067%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C196:50 scaffold1004 SAMTools SNP 455957 455957 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1004 SAMTools SNP 462107 462107 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1004 SAMTools SNP 463132 463132 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C93%2C0:99 scaffold1004 SAMTools SNP 463853 463853 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.38%2C9.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1004 SAMTools SNP 464420 464420 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C1%2C19%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.21%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C231:99 scaffold1004 SAMTools SNP 464440 464440 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C1%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 464880 464880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1004 SAMTools SNP 465103 465103 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C1%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.26%2C0.46%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1004 SAMTools SNP 465117 465117 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C11%2C26%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.41%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1004 SAMTools SNP 465137 465137 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.63%2C0.016%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1004 SAMTools SNP 465181 465181 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 467358 467358 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.36%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1004 SAMTools SNP 467529 467529 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1004 SAMTools SNP 468316 468316 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 470503 470503 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C103:28 scaffold1004 SAMTools SNP 472416 472416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1004 SAMTools SNP 472437 472437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1004 SAMTools SNP 483125 483125 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C215:66 scaffold1004 SAMTools SNP 489240 489240 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1004 SAMTools SNP 489299 489299 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.45%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C234:75 scaffold1004 SAMTools SNP 489356 489356 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C245:99 scaffold1004 SAMTools SNP 489705 489705 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold1004 SAMTools SNP 489735 489735 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold1004 SAMTools SNP 491345 491345 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C8.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C102:65 scaffold1004 SAMTools SNP 494265 494265 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 495594 495594 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C42%2C0:81 scaffold1004 SAMTools SNP 496684 496684 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 499418 499418 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.022%2C0.015%2C1%2C6.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold1004 SAMTools SNP 499546 499546 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1004 SAMTools SNP 499794 499794 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C5%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C0.055%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 499806 499806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 502218 502218 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1004 SAMTools SNP 502257 502257 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1004 SAMTools SNP 504387 504387 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C15%3BMQ%3D49%3BFQ%3D193%3BPV4%3D1%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C248:99 scaffold1004 SAMTools SNP 504412 504412 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C226:47 scaffold1004 SAMTools SNP 504436 504436 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1004 SAMTools SNP 506402 506402 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 506429 506429 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1004 SAMTools SNP 506458 506458 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1004 SAMTools SNP 507231 507231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1004 SAMTools SNP 508161 508161 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C38:41 scaffold1004 SAMTools SNP 508450 508450 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1004 SAMTools SNP 511777 511777 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1004 SAMTools SNP 511781 511781 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1004 SAMTools SNP 511811 511811 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1004 SAMTools SNP 513971 513971 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C35:38 scaffold1004 SAMTools SNP 514006 514006 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1004 SAMTools SNP 514030 514030 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 514034 514034 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 515584 515584 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00014%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1004 SAMTools SNP 516313 516313 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1004 SAMTools SNP 516454 516454 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.5%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C103:99 scaffold1004 SAMTools SNP 517588 517588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 517631 517631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 517678 517678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1004 SAMTools SNP 517925 517925 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.52%2C0.017%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1004 SAMTools SNP 517929 517929 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.52%2C0.21%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1004 SAMTools SNP 518702 518702 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1004 SAMTools SNP 519005 519005 9.33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C7.6e-20%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C10%2C0:13 scaffold1004 SAMTools SNP 519790 519790 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold1004 SAMTools SNP 519934 519934 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold1004 SAMTools SNP 520266 520266 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C30:30 scaffold1004 SAMTools SNP 521128 521128 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C45%2C0:87 scaffold1004 SAMTools SNP 521233 521233 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C6.6e-16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1004 SAMTools SNP 521272 521272 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.31%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C140:99 scaffold1004 SAMTools SNP 521306 521306 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold1004 SAMTools SNP 521308 521308 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold1004 SAMTools SNP 521703 521703 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C197:99 scaffold1004 SAMTools SNP 521712 521712 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C202:99 scaffold1004 SAMTools SNP 522021 522021 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold1004 SAMTools SNP 522499 522499 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1004 SAMTools SNP 523124 523124 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.17%2C0.0033%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1004 SAMTools SNP 523920 523920 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1004 SAMTools SNP 524116 524116 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.58%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1004 SAMTools SNP 524118 524118 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1004 SAMTools SNP 524320 524320 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.27%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1004 SAMTools SNP 524529 524529 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C2%2C9%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.016%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1004 SAMTools SNP 524732 524732 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C3%3BMQ%3D49%3BFQ%3D35%3BPV4%3D1%2C0.47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1004 SAMTools SNP 524741 524741 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C3%2C3%3BMQ%3D49%3BFQ%3D52%3BPV4%3D0.33%2C0.0044%2C0.073%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1004 SAMTools SNP 525231 525231 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1004 SAMTools SNP 526212 526212 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C226:96 scaffold1004 SAMTools SNP 528623 528623 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C42%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.23%2C2.4e-27%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1004 SAMTools SNP 529751 529751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C34%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 531055 531055 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1004 SAMTools SNP 531070 531070 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1004 SAMTools SNP 531391 531391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 532384 532384 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1004 SAMTools SNP 532936 532936 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.7e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C146:79 scaffold1004 SAMTools SNP 532988 532988 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1004 SAMTools SNP 537703 537703 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.038%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C201:99 scaffold1004 SAMTools SNP 537715 537715 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C130:99 scaffold1004 SAMTools SNP 537792 537792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 538153 538153 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1004 SAMTools SNP 539186 539186 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 539220 539220 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 539232 539232 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold1004 SAMTools SNP 548544 548544 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1004 SAMTools SNP 552983 552983 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1004 SAMTools SNP 552999 552999 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1004 SAMTools SNP 554992 554992 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C167:36 scaffold1004 SAMTools SNP 555616 555616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1004 SAMTools SNP 555651 555651 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1004 SAMTools SNP 557548 557548 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C70%2C30%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D7.1e-18%2C3.3e-36%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1004 SAMTools SNP 557588 557588 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C2%2C16%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.084%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1004 SAMTools SNP 558849 558849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 558953 558953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold1004 SAMTools SNP 559532 559532 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1004 SAMTools SNP 559555 559555 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1004 SAMTools SNP 560099 560099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 560126 560126 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.013%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 560144 560144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1004 SAMTools SNP 565353 565353 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C235:57 scaffold1004 SAMTools SNP 574883 574883 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C43%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 574922 574922 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1004 SAMTools SNP 575153 575153 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C57%2C21%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C7.9e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 576135 576135 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C211:70 scaffold1004 SAMTools SNP 577943 577943 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 584414 584414 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1004 SAMTools SNP 592870 592870 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1004 SAMTools SNP 593077 593077 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C68:70 scaffold1004 SAMTools SNP 593086 593086 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C85:85 scaffold1004 SAMTools SNP 593350 593350 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1004 SAMTools SNP 593428 593428 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1004 SAMTools SNP 594869 594869 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1004 SAMTools SNP 598494 598494 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 601727 601727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 603121 603121 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1004 SAMTools SNP 603532 603532 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1004 SAMTools SNP 603615 603615 19.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1004 SAMTools SNP 604546 604546 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C234:69 scaffold1004 SAMTools SNP 605084 605084 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.45%2C0.0051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C243:69 scaffold1004 SAMTools SNP 606660 606660 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.66%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1004 SAMTools SNP 606717 606717 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C105:99 scaffold1004 SAMTools SNP 606923 606923 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 606942 606942 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 607709 607709 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 612186 612186 80.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold1004 SAMTools SNP 612792 612792 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1004 SAMTools SNP 618898 618898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C506%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 623006 623006 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D34%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1004 SAMTools SNP 623033 623033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D42%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1004 SAMTools SNP 623069 623069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D45%3BFQ%3D8.54%3BPV4%3D1%2C0.0045%2C0.34%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C35:38 scaffold1004 SAMTools SNP 623144 623144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1004 SAMTools SNP 623403 623403 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.46%2C3.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C230:52 scaffold1004 SAMTools SNP 624938 624938 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C39%2C0:75 scaffold1004 SAMTools SNP 624960 624960 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1004 SAMTools SNP 628137 628137 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold1004 SAMTools SNP 628536 628536 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D96.6%3BPV4%3D1%2C0.24%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C134:99 scaffold1004 SAMTools SNP 628922 628922 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.36%2C1.1e-34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1004 SAMTools SNP 629277 629277 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold1004 SAMTools SNP 629971 629971 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 630464 630464 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 631837 631837 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C23:26 scaffold1009 SAMTools SNP 1297 1297 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1415 1415 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 2274 2274 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 35703 35703 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1009 SAMTools SNP 44709 44709 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 44752 44752 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1009 SAMTools SNP 45193 45193 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.12%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1009 SAMTools SNP 63609 63609 11.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1009 SAMTools SNP 64028 64028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1009 SAMTools SNP 66176 66176 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 67186 67186 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D1%2C0.059%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold1009 SAMTools SNP 68796 68796 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C119:37 scaffold1009 SAMTools SNP 75534 75534 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1009 SAMTools SNP 79069 79069 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.7e-20%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C239:53 scaffold1009 SAMTools SNP 79213 79213 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold1009 SAMTools SNP 79231 79231 22.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold1009 SAMTools SNP 97662 97662 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1009 SAMTools SNP 98095 98095 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 109209 109209 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1009 SAMTools SNP 113913 113913 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 114277 114277 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 115134 115134 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1009 SAMTools SNP 115155 115155 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 115774 115774 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 115780 115780 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1009 SAMTools SNP 167829 167829 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1009 SAMTools SNP 191706 191706 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1009 SAMTools SNP 244759 244759 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 253050 253050 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D43%3BFQ%3D32.8%3BPV4%3D0.22%2C9.8e-11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C73:63 scaffold1009 SAMTools SNP 253256 253256 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1009 SAMTools SNP 275522 275522 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1009 SAMTools SNP 297047 297047 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 302084 302084 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 302090 302090 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 302901 302901 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 303426 303426 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 334118 334118 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 334352 334352 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1009 SAMTools SNP 334372 334372 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1009 SAMTools SNP 334901 334901 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 335767 335767 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1009 SAMTools SNP 335821 335821 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1009 SAMTools SNP 335872 335872 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 336296 336296 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.06%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1009 SAMTools SNP 336309 336309 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1009 SAMTools SNP 336365 336365 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 336500 336500 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.079%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1009 SAMTools SNP 336932 336932 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0039%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1009 SAMTools SNP 343282 343282 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1009 SAMTools SNP 344674 344674 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1009 SAMTools SNP 344691 344691 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 344726 344726 35.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1009 SAMTools SNP 345709 345709 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1009 SAMTools SNP 345737 345737 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.11%2C5.6e-08%2C1%2C6.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C160:69 scaffold1009 SAMTools SNP 383417 383417 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 385816 385816 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 385850 385850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 386755 386755 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1009 SAMTools SNP 386795 386795 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 387267 387267 12.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1009 SAMTools SNP 389750 389750 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold1009 SAMTools SNP 390016 390016 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1009 SAMTools SNP 392565 392565 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 392717 392717 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 393466 393466 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 410298 410298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 414657 414657 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C2%2C8%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1009 SAMTools SNP 414660 414660 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 414959 414959 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1009 SAMTools SNP 416529 416529 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold1009 SAMTools SNP 417079 417079 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1009 SAMTools SNP 419601 419601 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C241:99 scaffold1009 SAMTools SNP 419613 419613 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 431103 431103 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 450183 450183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 450208 450208 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 466480 466480 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.3e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C63:66 scaffold1009 SAMTools SNP 467053 467053 42.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1009 SAMTools SNP 467842 467842 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C45%2C0:87 scaffold1009 SAMTools SNP 467875 467875 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C36%2C0:69 scaffold1009 SAMTools SNP 468075 468075 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1009 SAMTools SNP 468433 468433 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1009 SAMTools SNP 468562 468562 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1009 SAMTools SNP 468646 468646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C35%2C46%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1.7e-63%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 468674 468674 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1009 SAMTools SNP 468958 468958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C6.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469009 469009 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C38%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C2.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1009 SAMTools SNP 469270 469270 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1009 SAMTools SNP 469299 469299 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C84%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.031%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469562 469562 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C54%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469718 469718 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C26%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469742 469742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C13%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 490799 490799 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C219:99 scaffold1009 SAMTools SNP 491643 491643 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C195:99 scaffold1009 SAMTools SNP 491846 491846 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1009 SAMTools SNP 492812 492812 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C38:41 scaffold1009 SAMTools SNP 493254 493254 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C144:99 scaffold1009 SAMTools SNP 493410 493410 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold1009 SAMTools SNP 494095 494095 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 495389 495389 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.42%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C197:59 scaffold1009 SAMTools SNP 495536 495536 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.058%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold1009 SAMTools SNP 495549 495549 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 495772 495772 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1009 SAMTools SNP 496001 496001 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1009 SAMTools SNP 496173 496173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 496215 496215 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 497184 497184 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.48%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold1009 SAMTools SNP 497568 497568 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D41%3BFQ%3D53%3BPV4%3D0.44%2C0.086%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C80:83 scaffold1009 SAMTools SNP 497607 497607 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1009 SAMTools SNP 498671 498671 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1009 SAMTools SNP 499372 499372 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C219:99 scaffold1009 SAMTools SNP 502322 502322 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 502352 502352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 502612 502612 59.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 516140 516140 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1009 SAMTools SNP 623103 623103 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 623122 623122 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 625484 625484 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 630932 630932 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C4.3e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C242:73 scaffold1009 SAMTools SNP 632214 632214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 632220 632220 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1009 SAMTools SNP 632230 632230 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1009 SAMTools SNP 632504 632504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 638041 638041 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C255%2C0:99 scaffold1009 SAMTools SNP 638668 638668 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C62%2C14%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C4.6e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 639013 639013 37.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1009 SAMTools SNP 639093 639093 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C9.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1009 SAMTools SNP 639301 639301 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.17%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C223:57 scaffold1009 SAMTools SNP 639332 639332 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 639441 639441 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.54%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1009 SAMTools SNP 640463 640463 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C23%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.0027%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 641055 641055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 641094 641094 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1009 SAMTools SNP 641388 641388 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1009 SAMTools SNP 641415 641415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 643695 643695 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C17%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1009 SAMTools SNP 646153 646153 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 647682 647682 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.29%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1009 SAMTools SNP 647867 647867 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 649139 649139 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C48%2C0:93 scaffold1009 SAMTools SNP 649184 649184 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.066%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 649494 649494 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 649748 649748 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1009 SAMTools SNP 657088 657088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 660046 660046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C55%3BMQ%3D50%3BFQ%3D-251%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C0:99 scaffold1009 SAMTools SNP 660255 660255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 660330 660330 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1009 SAMTools SNP 661543 661543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 661846 661846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C30%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1009 SAMTools SNP 666470 666470 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C190:99 scaffold1009 SAMTools SNP 666703 666703 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 666706 666706 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.056%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1009 SAMTools SNP 666721 666721 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 666763 666763 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C226:71 scaffold1009 SAMTools SNP 668117 668117 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1009 SAMTools SNP 668180 668180 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C155:99 scaffold1009 SAMTools SNP 668505 668505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 669194 669194 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.062%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 669203 669203 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold1009 SAMTools SNP 670541 670541 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1009 SAMTools SNP 670550 670550 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1009 SAMTools SNP 671705 671705 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 671751 671751 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 671770 671770 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1009 SAMTools SNP 672670 672670 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 672709 672709 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 672736 672736 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 672960 672960 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1009 SAMTools SNP 673234 673234 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1009 SAMTools SNP 673256 673256 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 674195 674195 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C45%2C120%2C62%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.81%2C2.5e-237%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1009 SAMTools SNP 674334 674334 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C114%2C24%2C70%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C7.8e-143%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1009 SAMTools SNP 678479 678479 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1009 SAMTools SNP 679317 679317 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1009 SAMTools SNP 679901 679901 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.033%2C1.3e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C149:58 scaffold1009 SAMTools SNP 681836 681836 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 687929 687929 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 687935 687935 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1009 SAMTools SNP 688059 688059 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 688794 688794 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 689351 689351 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 693009 693009 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 693115 693115 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 694491 694491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 694496 694496 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C120%2C0%2C95%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00085%2C3.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1009 SAMTools SNP 694983 694983 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1009 SAMTools SNP 696538 696538 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C32%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.075%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697009 697009 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1009 SAMTools SNP 697030 697030 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.069%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1009 SAMTools SNP 697075 697075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.3%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697398 697398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697899 697899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C38%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1009 SAMTools SNP 698495 698495 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 698504 698504 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1009 SAMTools SNP 698534 698534 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1009 SAMTools SNP 702646 702646 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C115:99 scaffold1009 SAMTools SNP 702920 702920 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C76%2C0%3BMQ%3D50%3BFQ%3D-228%3BPV4%3D0.013%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C201%2C0:99 scaffold1009 SAMTools SNP 702962 702962 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1009 SAMTools SNP 703007 703007 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1009 SAMTools SNP 703178 703178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1009 SAMTools SNP 703253 703253 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C16%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0051%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1009 SAMTools SNP 703485 703485 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.39%2C4.1e-19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1009 SAMTools SNP 703514 703514 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1009 SAMTools SNP 703520 703520 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C1%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1009 SAMTools SNP 703704 703704 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 703743 703743 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C13%2C1%3BMQ%3D46%3BFQ%3D178%3BPV4%3D0.0034%2C1%2C0.05%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1009 SAMTools SNP 703809 703809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C33%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.043%2C0.35%2C0.31%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 705036 705036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C32%2C81%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.42%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 705887 705887 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1009 SAMTools SNP 707689 707689 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C8%2C20%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 708494 708494 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C51%2C0:99 scaffold1009 SAMTools SNP 708496 708496 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.53%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1009 SAMTools SNP 708825 708825 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C5%3BMQ%3D20%3BFQ%3D27%3BPV4%3D0.27%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C54:57 scaffold1009 SAMTools SNP 708848 708848 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D21%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C90%2C0:99 scaffold1009 SAMTools SNP 709360 709360 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D34%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C57%2C0:99 scaffold1009 SAMTools SNP 709407 709407 26.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold1009 SAMTools SNP 709444 709444 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C30%2C0:57 scaffold1009 SAMTools SNP 709468 709468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 709919 709919 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C8.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1009 SAMTools SNP 711172 711172 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C42%2C0:78 scaffold1009 SAMTools SNP 711190 711190 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C142:80 scaffold1009 SAMTools SNP 713080 713080 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1009 SAMTools SNP 713116 713116 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1009 SAMTools SNP 714006 714006 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.36%2C0.0011%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1009 SAMTools SNP 717570 717570 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.093%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1009 SAMTools SNP 717615 717615 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 717633 717633 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00071%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1009 SAMTools SNP 717919 717919 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C81%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 718147 718147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1009 SAMTools SNP 718167 718167 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 718429 718429 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C89%2C0%2C54%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1009 SAMTools SNP 718490 718490 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1009 SAMTools SNP 718495 718495 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C0.2%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1009 SAMTools SNP 718499 718499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 718615 718615 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.32%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold1009 SAMTools SNP 718873 718873 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00014%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1009 SAMTools SNP 718879 718879 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00017%2C0.022%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1009 SAMTools SNP 719164 719164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 719469 719469 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1009 SAMTools SNP 720158 720158 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C160:44 scaffold1009 SAMTools SNP 720216 720216 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1009 SAMTools SNP 723793 723793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1009 SAMTools SNP 724762 724762 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 724878 724878 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C40%2C22%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1009 SAMTools SNP 725787 725787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C83%2C3%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 726113 726113 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D3.1e-05%2C9.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 726727 726727 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C21%2C0:39 scaffold1009 SAMTools SNP 727653 727653 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C7%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.33%2C0.021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1009 SAMTools SNP 727762 727762 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D5.9e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 727938 727938 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C35%2C1%2C14%3BMQ%3D50%3BFQ%3D77%3BPV4%3D9.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 728159 728159 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1009 SAMTools SNP 728447 728447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 728651 728651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C117%2C57%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 729062 729062 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C44%2C27%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D2.2e-06%2C1.1e-15%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1009 SAMTools SNP 729143 729143 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C51%2C3%2C88%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1.3e-05%2C7.2e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1009 SAMTools SNP 729161 729161 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C45%2C3%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 729411 729411 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.12%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 729430 729430 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C0.1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1009 SAMTools SNP 729601 729601 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1009 SAMTools SNP 730528 730528 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.34%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1009 SAMTools SNP 730962 730962 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C0.16%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C138:61 scaffold1009 SAMTools SNP 731308 731308 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C3.1e-17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1009 SAMTools SNP 744167 744167 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1009 SAMTools SNP 749244 749244 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1009 SAMTools SNP 769182 769182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C56%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1009 SAMTools SNP 769740 769740 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C35%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.24%2C0.3%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 769953 769953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 780448 780448 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D571%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D257%2C57%2C170%2C68%3BMQ%3D41%3BFQ%3D222%3BPV4%3D0.0041%2C1%2C0.00022%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 781061 781061 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C0%2C106%3BMQ%3D18%3BFQ%3D-223%3BPV4%3D0.0016%2C1%2C0.027%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C196%2C0:99 scaffold1009 SAMTools SNP 781552 781552 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1009 SAMTools SNP 795517 795517 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold1009 SAMTools SNP 796304 796304 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1009 SAMTools SNP 796389 796389 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 796565 796565 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 797682 797682 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold1009 SAMTools SNP 800980 800980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 801469 801469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 803717 803717 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1009 SAMTools SNP 804353 804353 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1009 SAMTools SNP 804407 804407 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C0%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.022%2C2.9e-08%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1009 SAMTools SNP 805069 805069 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 805173 805173 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 805866 805866 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 827280 827280 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C176:51 scaffold1009 SAMTools SNP 827336 827336 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.026%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1009 SAMTools SNP 910239 910239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D689%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D227%2C66%2C358%2C38%3BMQ%3D39%3BFQ%3D225%3BPV4%3D4.7e-06%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 913583 913583 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C110%3BMQ%3D27%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C255%2C0:99 scaffold1009 SAMTools SNP 954910 954910 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 956881 956881 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C114%2C33%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C3.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 956977 956977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1009 SAMTools SNP 957527 957527 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C11%2C74%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 958835 958835 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C12%2C0%2C61%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.2e-27%2C5.2e-31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1009 SAMTools SNP 959856 959856 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C86%3BMQ%3D50%3BFQ%3D-242%3BPV4%3D1%2C1.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C215%2C0:99 scaffold1009 SAMTools SNP 959869 959869 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-7.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C20:23 scaffold1009 SAMTools SNP 959922 959922 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C17%2C144%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.009%2C1e-241%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1009 SAMTools SNP 960033 960033 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1009 SAMTools SNP 961874 961874 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C0%2C11%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1009 SAMTools SNP 961877 961877 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.47%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1009 SAMTools SNP 962265 962265 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C126%2C0:99 scaffold1009 SAMTools SNP 964377 964377 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C206:63 scaffold1009 SAMTools SNP 965692 965692 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.058%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C85:70 scaffold1009 SAMTools SNP 967171 967171 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1009 SAMTools SNP 969682 969682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 973488 973488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 973609 973609 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold1009 SAMTools SNP 974211 974211 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-7.8%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C20:23 scaffold1009 SAMTools SNP 977376 977376 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C60%2C0:99 scaffold1009 SAMTools SNP 977613 977613 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.044%2C4.2e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 977924 977924 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C42%2C0:80 scaffold1009 SAMTools SNP 978571 978571 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 978576 978576 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C9.6e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1009 SAMTools SNP 978582 978582 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.29%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C209:99 scaffold1009 SAMTools SNP 978654 978654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C27%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 979620 979620 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.9e-22%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold1009 SAMTools SNP 979996 979996 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 980045 980045 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C110%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.039%2C0.41%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1009 SAMTools SNP 980976 980976 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C106%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 984332 984332 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C38%2C0%2C14%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.015%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1009 SAMTools SNP 984639 984639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 984660 984660 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C6%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.69%2C1%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1009 SAMTools SNP 984669 984669 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1009 SAMTools SNP 985033 985033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C28%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 985062 985062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 985087 985087 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1009 SAMTools SNP 985818 985818 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C211:99 scaffold1009 SAMTools SNP 985842 985842 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.56%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C246:99 scaffold1009 SAMTools SNP 1000599 1000599 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1001219 1001219 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C215:31 scaffold1009 SAMTools SNP 1001241 1001241 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0047%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 1001675 1001675 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C57%2C11%2C37%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.83%2C3.2e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1009 SAMTools SNP 1002405 1002405 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C59%2C58%2C42%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.89%2C1.4e-176%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1009 SAMTools SNP 1002656 1002656 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1009 SAMTools SNP 1002743 1002743 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C14%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1003732 1003732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1003793 1003793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1004334 1004334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1009 SAMTools SNP 1004489 1004489 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C62%2C60%2C62%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.53%2C2.8e-116%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1009 SAMTools SNP 1004781 1004781 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C3%2C0:6 scaffold1009 SAMTools SNP 1005132 1005132 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C90%2C149%2C86%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.19%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1009 SAMTools SNP 1006340 1006340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1009446 1009446 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C57%2C0:99 scaffold1009 SAMTools SNP 1009512 1009512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C5%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1009 SAMTools SNP 1016152 1016152 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C7%3BMQ%3D47%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1009 SAMTools SNP 1017729 1017729 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.1e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1009 SAMTools SNP 1019155 1019155 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C63%2C40%2C50%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.24%2C3.3e-124%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 1019242 1019242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C42%2C109%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1051038 1051038 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C9.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C218:79 scaffold1009 SAMTools SNP 1052127 1052127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1053085 1053085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 1053097 1053097 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C195:99 scaffold1009 SAMTools SNP 1053340 1053340 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.079%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C237:99 scaffold1009 SAMTools SNP 1055104 1055104 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1055111 1055111 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1009 SAMTools SNP 1055146 1055146 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1009 SAMTools SNP 1055148 1055148 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1009 SAMTools SNP 1057704 1057704 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1009 SAMTools SNP 1057740 1057740 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1009 SAMTools SNP 1057985 1057985 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1009 SAMTools SNP 1058018 1058018 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 1058096 1058096 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1009 SAMTools SNP 1061342 1061342 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C102:99 scaffold1009 SAMTools SNP 1061349 1061349 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C234:99 scaffold1009 SAMTools SNP 1061577 1061577 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.5%2C2.9e-08%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 1064705 1064705 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1009 SAMTools SNP 1074107 1074107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C3%3BMQ%3D45%3BFQ%3D223%3BPV4%3D0.67%2C0.41%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1009 SAMTools SNP 1076632 1076632 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1076674 1076674 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C3%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D0.22%2C0.024%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1009 SAMTools SNP 1085652 1085652 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1009 SAMTools SNP 1087335 1087335 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1009 SAMTools SNP 1087715 1087715 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.019%2C0.00015%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1009 SAMTools SNP 1089020 1089020 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1009 SAMTools SNP 1089371 1089371 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.21%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1009 SAMTools SNP 1089477 1089477 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.52%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1009 SAMTools SNP 1090504 1090504 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1009 SAMTools SNP 1090760 1090760 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.2%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1009 SAMTools SNP 1091354 1091354 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.27%2C0.045%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1009 SAMTools SNP 1093046 1093046 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.29%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1009 SAMTools SNP 1093652 1093652 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.066%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C186:51 scaffold1009 SAMTools SNP 1094061 1094061 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0022%2C0.00075%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C152:99 scaffold1009 SAMTools SNP 1094252 1094252 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 1095045 1095045 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.34%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 1096110 1096110 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.6%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1009 SAMTools SNP 1096113 1096113 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1009 SAMTools SNP 1097213 1097213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1100289 1100289 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C8.4e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1009 SAMTools SNP 1102404 1102404 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.012%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C137:84 scaffold1009 SAMTools SNP 1102414 1102414 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.2%2C0.038%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C189:90 scaffold1009 SAMTools SNP 1102812 1102812 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C6%2C61%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1103193 1103193 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C179:99 scaffold1009 SAMTools SNP 1103226 1103226 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1009 SAMTools SNP 1103273 1103273 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1009 SAMTools SNP 1103623 1103623 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.15%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1104103 1104103 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold1009 SAMTools SNP 1105708 1105708 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1009 SAMTools SNP 1106308 1106308 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1009 SAMTools SNP 1106332 1106332 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1009 SAMTools SNP 1106359 1106359 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1009 SAMTools SNP 1107155 1107155 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1107211 1107211 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C253:99 scaffold1009 SAMTools SNP 1107324 1107324 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1009 SAMTools SNP 1110771 1110771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1111532 1111532 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C61%2C1%2C37%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.42%2C3.4e-16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1009 SAMTools SNP 1112557 1112557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C18%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1113362 1113362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C96%2C39%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-08%2C1.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1114024 1114024 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 1114036 1114036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1115627 1115627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C16%2C33%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-16%2C1%2C1%2C4.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1116466 1116466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1116500 1116500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 1122959 1122959 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D1%2C0.051%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C162:28 scaffold1009 SAMTools SNP 1133076 1133076 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C24%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1009 SAMTools SNP 1133839 1133839 44.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1009 SAMTools SNP 1134049 1134049 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.53%2C0.0091%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 1134070 1134070 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C158:56 scaffold1009 SAMTools SNP 1140650 1140650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.2e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1141530 1141530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1141547 1141547 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1142007 1142007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1142736 1142736 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C80:78 scaffold1009 SAMTools SNP 1143001 1143001 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D10.4%3BPV4%3D1%2C0.074%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C169:39 scaffold1009 SAMTools SNP 1143101 1143101 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D37%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C148:33 scaffold1009 SAMTools SNP 1143119 1143119 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D27%3BFQ%3D9.74%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold1009 SAMTools SNP 1147298 1147298 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1147307 1147307 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1149639 1149639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1009 SAMTools SNP 1149649 1149649 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1150448 1150448 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C35%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1009 SAMTools SNP 1150582 1150582 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C5%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1009 SAMTools SNP 1150595 1150595 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1009 SAMTools SNP 1150631 1150631 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.021%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold1009 SAMTools SNP 1151520 1151520 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C35:38 scaffold1009 SAMTools SNP 1151565 1151565 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1009 SAMTools SNP 1151831 1151831 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.48%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1009 SAMTools SNP 1152136 1152136 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1009 SAMTools SNP 1152148 1152148 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1009 SAMTools SNP 1152175 1152175 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1153210 1153210 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1009 SAMTools SNP 1154025 1154025 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C11%3BMQ%3D13%3BFQ%3D-105%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C78%2C0:99 scaffold1009 SAMTools SNP 1241845 1241845 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1009 SAMTools SNP 1277212 1277212 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold1009 SAMTools SNP 1322739 1322739 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1009 SAMTools SNP 1368870 1368870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1370392 1370392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C43%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1009 SAMTools SNP 1373905 1373905 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1009 SAMTools SNP 1373963 1373963 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1377388 1377388 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1009 SAMTools SNP 1377392 1377392 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1379938 1379938 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1009 SAMTools SNP 1386574 1386574 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1009 SAMTools SNP 1386593 1386593 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C171:99 scaffold1009 SAMTools SNP 1386620 1386620 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.057%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1009 SAMTools SNP 1394219 1394219 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1009 SAMTools SNP 1396027 1396027 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C8%2C5%3BMQ%3D41%3BFQ%3D137%3BPV4%3D0.72%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C241:99 scaffold1009 SAMTools SNP 1396836 1396836 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C224:99 scaffold1009 SAMTools SNP 1399786 1399786 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 1401301 1401301 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C7.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C77:36 scaffold1009 SAMTools SNP 1402541 1402541 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C221:72 scaffold1009 SAMTools SNP 1402550 1402550 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1009 SAMTools SNP 1402647 1402647 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1402692 1402692 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1009 SAMTools SNP 1405784 1405784 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C31%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D4.3e-07%2C9.2e-09%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C230:34 scaffold1009 SAMTools SNP 1405898 1405898 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1405899 1405899 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1009 SAMTools SNP 1405900 1405900 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1009 SAMTools SNP 1405948 1405948 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1009 SAMTools SNP 1406187 1406187 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1412207 1412207 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold1009 SAMTools SNP 1413085 1413085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C20%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1009 SAMTools SNP 1415812 1415812 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.01%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1009 SAMTools SNP 1416590 1416590 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C0%2C22%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.021%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1009 SAMTools SNP 1416608 1416608 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1009 SAMTools SNP 1417100 1417100 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1009 SAMTools SNP 1419149 1419149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1419192 1419192 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1009 SAMTools SNP 1421297 1421297 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1424794 1424794 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.51%2C1.4e-20%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C137:99 scaffold1009 SAMTools SNP 1442166 1442166 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold1009 SAMTools SNP 1442496 1442496 16.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C9:12 scaffold1009 SAMTools SNP 1442697 1442697 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C91%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.15%2C3e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C255%2C0:99 scaffold1009 SAMTools SNP 1442856 1442856 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 1442964 1442964 168 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C19%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C250%2C0%2C203%2C233%2C200:99 scaffold1009 SAMTools SNP 1443114 1443114 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C175%2C0:99 scaffold1009 SAMTools SNP 1443294 1443294 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1443559 1443559 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1009 SAMTools SNP 1443568 1443568 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0214%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1009 SAMTools SNP 1443580 1443580 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C13%2C0%3BMQ%3D49%3BFQ%3D143%3BPV4%3D0.57%2C1%2C0.36%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1009 SAMTools SNP 1444278 1444278 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C15%2C1%3BMQ%3D49%3BFQ%3D177%3BPV4%3D0.67%2C0.32%2C0.38%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1009 SAMTools SNP 1444717 1444717 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C14%2C0%3BMQ%3D49%3BFQ%3D111%3BPV4%3D8.8e-12%2C2e-12%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1009 SAMTools SNP 1445259 1445259 11.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1009 SAMTools SNP 1447243 1447243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1447267 1447267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1009 SAMTools SNP 1447834 1447834 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.17%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1009 SAMTools SNP 1447864 1447864 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.058%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1009 SAMTools SNP 1448227 1448227 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C13%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C3.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1009 SAMTools SNP 1449675 1449675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C13%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1009 SAMTools SNP 1450443 1450443 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C14%2C23%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1009 SAMTools SNP 1450487 1450487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C182%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1450613 1450613 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C120%2C2%2C27%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1009 SAMTools SNP 1451194 1451194 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C92%2C1%2C11%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.51%2C1%2C1%2C1.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1009 SAMTools SNP 1451326 1451326 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1009 SAMTools SNP 1451702 1451702 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1451795 1451795 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1009 SAMTools SNP 1451810 1451810 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C21%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1009 SAMTools SNP 1451816 1451816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.00043%2C0.057%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1009 SAMTools SNP 1451843 1451843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C22%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1452337 1452337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1452370 1452370 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C11%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D2.7e-07%2C1%2C1%2C6.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1009 SAMTools SNP 1453068 1453068 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1453389 1453389 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C201:58 scaffold1009 SAMTools SNP 1453501 1453501 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1009 SAMTools SNP 1453502 1453502 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1009 SAMTools SNP 1453503 1453503 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1009 SAMTools SNP 1453509 1453509 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1009 SAMTools SNP 1453781 1453781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 1454036 1454036 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold1009 SAMTools SNP 1454301 1454301 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.6e-08%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C177:46 scaffold1009 SAMTools SNP 1454496 1454496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1454628 1454628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.074%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1454631 1454631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1461443 1461443 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1009 SAMTools SNP 1461451 1461451 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 1461690 1461690 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1462157 1462157 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C93%2C0:99 scaffold1009 SAMTools SNP 1463392 1463392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C7%2C36%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.67%2C0.021%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1009 SAMTools SNP 1464339 1464339 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C22%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1009 SAMTools SNP 1464553 1464553 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C34%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1465321 1465321 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1466342 1466342 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1466387 1466387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C45%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1009 SAMTools SNP 1466405 1466405 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1009 SAMTools SNP 1466681 1466681 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1009 SAMTools SNP 1466867 1466867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C27%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1467539 1467539 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1009 SAMTools SNP 1467612 1467612 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C11%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1468707 1468707 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1468719 1468719 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1009 SAMTools SNP 1469118 1469118 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.13%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1469148 1469148 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1009 SAMTools SNP 1469231 1469231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1473477 1473477 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1009 SAMTools SNP 1473501 1473501 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.58%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1009 SAMTools SNP 1473694 1473694 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C126%2C0:99 scaffold1009 SAMTools SNP 1475456 1475456 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.12%2C1.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1009 SAMTools SNP 1475564 1475564 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C19%2C8%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 1475678 1475678 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1475748 1475748 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 1475775 1475775 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 1478554 1478554 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 1478589 1478589 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 1487915 1487915 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1009 SAMTools SNP 1488054 1488054 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.19%2C6.2e-15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C245:99 scaffold1009 SAMTools SNP 1488344 1488344 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C2.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1009 SAMTools SNP 1488759 1488759 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1009 SAMTools SNP 1490197 1490197 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1499829 1499829 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1009 SAMTools SNP 1499851 1499851 77.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1009 SAMTools SNP 1500217 1500217 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.6%2C2.5e-13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1009 SAMTools SNP 1500510 1500510 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold1009 SAMTools SNP 1501294 1501294 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1501314 1501314 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1504170 1504170 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1504404 1504404 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1504710 1504710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1009 SAMTools SNP 1504738 1504738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1009 SAMTools SNP 1504795 1504795 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1009 SAMTools SNP 1505380 1505380 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1009 SAMTools SNP 1507709 1507709 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1009 SAMTools SNP 1507761 1507761 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1009 SAMTools SNP 1518243 1518243 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1518961 1518961 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1009 SAMTools SNP 1519531 1519531 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1519533 1519533 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1520386 1520386 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold1009 SAMTools SNP 1520395 1520395 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.047%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1009 SAMTools SNP 1520419 1520419 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1009 SAMTools SNP 1521046 1521046 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1009 SAMTools SNP 1521070 1521070 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1009 SAMTools SNP 1521075 1521075 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1009 SAMTools SNP 1522670 1522670 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1522711 1522711 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.091%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1522963 1522963 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C115:99 scaffold1009 SAMTools SNP 1523008 1523008 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1523050 1523050 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1523862 1523862 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.088%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C219:99 scaffold1009 SAMTools SNP 1523864 1523864 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold1009 SAMTools SNP 1523898 1523898 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1009 SAMTools SNP 1524243 1524243 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1524257 1524257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C6%2C39%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1524838 1524838 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1528161 1528161 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C72%2C0:99 scaffold1009 SAMTools SNP 1528512 1528512 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528518 1528518 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1528807 1528807 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1528846 1528846 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528860 1528860 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528888 1528888 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1009 SAMTools SNP 1529650 1529650 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1009 SAMTools SNP 1535444 1535444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1009 SAMTools SNP 1535842 1535842 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold1009 SAMTools SNP 1537521 1537521 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C27%2C0:51 scaffold1009 SAMTools SNP 1538085 1538085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 1538114 1538114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1540475 1540475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1540814 1540814 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 1540968 1540968 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1009 SAMTools SNP 1550871 1550871 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1552070 1552070 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1552705 1552705 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1009 SAMTools SNP 1554049 1554049 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1009 SAMTools SNP 1554107 1554107 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C166:99 scaffold1009 SAMTools SNP 1554114 1554114 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1009 SAMTools SNP 1558067 1558067 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold1009 SAMTools SNP 1558111 1558111 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1559151 1559151 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1009 SAMTools SNP 1560060 1560060 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1009 SAMTools SNP 1561247 1561247 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C35:38 scaffold1009 SAMTools SNP 1573098 1573098 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C185:44 scaffold1009 SAMTools SNP 1573271 1573271 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 1574460 1574460 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1579258 1579258 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1579274 1579274 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1584986 1584986 173 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0%2C195%2C1%2C192:39 scaffold1009 SAMTools SNP 1585201 1585201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 1585550 1585550 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1009 SAMTools SNP 1586604 1586604 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1586646 1586646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1588529 1588529 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1588732 1588732 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1588735 1588735 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1592221 1592221 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1592873 1592873 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1009 SAMTools SNP 1592897 1592897 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 1592987 1592987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 1593981 1593981 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.43%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold1009 SAMTools SNP 1595135 1595135 92.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1009 SAMTools SNP 1595625 1595625 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1595638 1595638 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1595922 1595922 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C24%2C0:45 scaffold1009 SAMTools SNP 1595955 1595955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1009 SAMTools SNP 1596456 1596456 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1598519 1598519 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8005%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D434%2C3684%2C401%2C3483%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C9.4e-07%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1600937 1600937 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2522%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D379%2C769%2C156%2C616%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-10%2C1%2C1%2C3.2e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1601584 1601584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3671%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D594%2C816%2C1171%2C808%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-22%2C1.6e-161%2C1%2C5.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1601650 1601650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1684%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C239%2C134%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C6e-170%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1602198 1602198 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1009 SAMTools SNP 1603507 1603507 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.042%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1009 SAMTools SNP 1612436 1612436 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1616834 1616834 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1009 SAMTools SNP 1617606 1617606 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1009 SAMTools SNP 1617816 1617816 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1009 SAMTools SNP 1617835 1617835 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1618059 1618059 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1009 SAMTools SNP 1618123 1618123 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1618733 1618733 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1619932 1619932 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1009 SAMTools SNP 1621294 1621294 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1625698 1625698 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1625739 1625739 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1626852 1626852 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C24%2C0:45 scaffold1009 SAMTools SNP 1627143 1627143 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D46%3BFQ%3D51%3BPV4%3D1%2C0.078%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C78:81 scaffold1009 SAMTools SNP 1627580 1627580 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1628104 1628104 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1634012 1634012 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 1634146 1634146 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C9%3BMQ%3D46%3BFQ%3D20.1%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C47:50 scaffold1009 SAMTools SNP 1634450 1634450 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1009 SAMTools SNP 1634453 1634453 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C40:43 scaffold1009 SAMTools SNP 1636275 1636275 11.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1009 SAMTools SNP 1636344 1636344 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1009 SAMTools SNP 1636386 1636386 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1009 SAMTools SNP 1637067 1637067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1637124 1637124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1637270 1637270 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.033%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1009 SAMTools SNP 1645355 1645355 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C118:54 scaffold1009 SAMTools SNP 1647308 1647308 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1661496 1661496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1670519 1670519 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C219:99 scaffold1009 SAMTools SNP 1679566 1679566 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1679590 1679590 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.43%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C71:39 scaffold1009 SAMTools SNP 1683313 1683313 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1009 SAMTools SNP 1683321 1683321 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1683406 1683406 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C125%2C36%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1.4e-23%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1685630 1685630 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C25%2C138%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1685650 1685650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C19%2C84%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1685705 1685705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1009 SAMTools SNP 1685892 1685892 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C40%2C32%2C24%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.32%2C7e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 1686314 1686314 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1e-09%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C243:42 scaffold1009 SAMTools SNP 1697324 1697324 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1009 SAMTools SNP 1701267 1701267 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1009 SAMTools SNP 1701303 1701303 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 1701315 1701315 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1722013 1722013 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.45%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1009 SAMTools SNP 1722463 1722463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C10%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 1722484 1722484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1722808 1722808 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1009 SAMTools SNP 1722812 1722812 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1722821 1722821 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1009 SAMTools SNP 1723466 1723466 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1009 SAMTools SNP 1723491 1723491 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 1723843 1723843 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1723844 1723844 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1009 SAMTools SNP 1723915 1723915 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1009 SAMTools SNP 1724610 1724610 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1726016 1726016 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1726835 1726835 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 1727363 1727363 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1727742 1727742 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1729322 1729322 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1730737 1730737 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1009 SAMTools SNP 1731069 1731069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1731397 1731397 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1009 SAMTools SNP 1731409 1731409 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.091%2C0.027%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1009 SAMTools SNP 1731983 1731983 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 1732101 1732101 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1009 SAMTools SNP 1732164 1732164 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1732635 1732635 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1009 SAMTools SNP 1733543 1733543 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1733578 1733578 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1734193 1734193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1734349 1734349 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1734841 1734841 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1009 SAMTools SNP 1734897 1734897 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.038%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1009 SAMTools SNP 1735259 1735259 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1009 SAMTools SNP 1735423 1735423 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1741685 1741685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C0%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1742287 1742287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C350%2C96%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1742601 1742601 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D745%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D276%2C217%2C114%2C131%3BMQ%3D46%3BFQ%3D57%3BPV4%3D0.019%2C0%2C8.8e-63%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1009 SAMTools SNP 1744108 1744108 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C4%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C2.9e-05%2C0.49%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1744120 1744120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C5%2C48%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.7%2C1.5e-06%2C0.48%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1744132 1744132 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C1%2C24%3BMQ%3D44%3BFQ%3D162%3BPV4%3D0.66%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1009 SAMTools SNP 1744884 1744884 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D29%3BFQ%3D87%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C135:99 scaffold1009 SAMTools SNP 1744905 1744905 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C27%2C0:51 scaffold1009 SAMTools SNP 1744953 1744953 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1009 SAMTools SNP 1753615 1753615 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1009 SAMTools SNP 1754156 1754156 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1009 SAMTools SNP 1754180 1754180 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D1%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold1009 SAMTools SNP 1754683 1754683 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C0.22%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C37:40 scaffold1009 SAMTools SNP 1754701 1754701 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.49%2C0.14%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold1009 SAMTools SNP 1755081 1755081 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1755343 1755343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1759746 1759746 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.33%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1009 SAMTools SNP 1759764 1759764 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1009 SAMTools SNP 1761235 1761235 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D0.37%2C3.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C26:29 scaffold1009 SAMTools SNP 1761256 1761256 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1009 SAMTools SNP 1761274 1761274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1762013 1762013 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C8%3BMQ%3D47%3BFQ%3D98%3BPV4%3D1%2C0.087%2C0.0016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1009 SAMTools SNP 1762058 1762058 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1009 SAMTools SNP 1762091 1762091 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C107:99 scaffold1009 SAMTools SNP 1762106 1762106 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C251:99 scaffold1009 SAMTools SNP 1762477 1762477 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1009 SAMTools SNP 1762525 1762525 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold101 SAMTools SNP 1435 1435 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold101 SAMTools SNP 1650 1650 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 3888 3888 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold101 SAMTools SNP 4258 4258 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C15%2C19%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.8%2C0.027%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 13407 13407 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold101 SAMTools SNP 21129 21129 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold101 SAMTools SNP 87308 87308 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold101 SAMTools SNP 87784 87784 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold101 SAMTools SNP 88807 88807 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold101 SAMTools SNP 90071 90071 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold101 SAMTools SNP 90373 90373 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold101 SAMTools SNP 90526 90526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 90749 90749 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold101 SAMTools SNP 91576 91576 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold101 SAMTools SNP 120831 120831 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.5%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C98:99 scaffold101 SAMTools SNP 123736 123736 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C0.47%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold101 SAMTools SNP 124105 124105 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.6e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold101 SAMTools SNP 124148 124148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold101 SAMTools SNP 124894 124894 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold101 SAMTools SNP 124900 124900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.6%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold101 SAMTools SNP 127930 127930 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold101 SAMTools SNP 127946 127946 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 128628 128628 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 129673 129673 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold101 SAMTools SNP 129678 129678 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.018%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold101 SAMTools SNP 129864 129864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold101 SAMTools SNP 129891 129891 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold101 SAMTools SNP 130417 130417 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C117%2C0:99 scaffold101 SAMTools SNP 134859 134859 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold101 SAMTools SNP 135646 135646 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold101 SAMTools SNP 136383 136383 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.5%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 136731 136731 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 136998 136998 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 137239 137239 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C35%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 142757 142757 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold101 SAMTools SNP 142774 142774 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.46%2C9.7e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C76:49 scaffold101 SAMTools SNP 144727 144727 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold101 SAMTools SNP 146979 146979 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C225%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 147049 147049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C14%2C17%2C273%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.61%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 152540 152540 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152552 152552 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152672 152672 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152921 152921 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold101 SAMTools SNP 153186 153186 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 153197 153197 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 154818 154818 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold101 SAMTools SNP 154872 154872 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold101 SAMTools SNP 157081 157081 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 158839 158839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 158854 158854 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 158899 158899 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 158938 158938 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold101 SAMTools SNP 158947 158947 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold101 SAMTools SNP 159810 159810 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold101 SAMTools SNP 165712 165712 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold101 SAMTools SNP 167211 167211 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold101 SAMTools SNP 169109 169109 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold101 SAMTools SNP 169431 169431 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold101 SAMTools SNP 169808 169808 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold101 SAMTools SNP 169820 169820 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C238:99 scaffold101 SAMTools SNP 170619 170619 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold101 SAMTools SNP 171014 171014 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 177136 177136 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 177190 177190 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.17%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C10%2C0:17 scaffold101 SAMTools SNP 177241 177241 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold101 SAMTools SNP 177740 177740 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold101 SAMTools SNP 178747 178747 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold101 SAMTools SNP 178968 178968 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C230:99 scaffold101 SAMTools SNP 179718 179718 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold101 SAMTools SNP 179870 179870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 179880 179880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 181919 181919 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold101 SAMTools SNP 181926 181926 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold101 SAMTools SNP 182026 182026 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 182050 182050 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold101 SAMTools SNP 185449 185449 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 189627 189627 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 189645 189645 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 199620 199620 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold101 SAMTools SNP 204968 204968 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 226351 226351 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226384 226384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.48%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226441 226441 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226682 226682 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold101 SAMTools SNP 226685 226685 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold101 SAMTools SNP 226739 226739 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.041%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold101 SAMTools SNP 228460 228460 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 229111 229111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.05%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 229476 229476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C21%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold101 SAMTools SNP 229922 229922 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C12%2C1%3BMQ%3D49%3BFQ%3D191%3BPV4%3D0.015%2C0.027%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold101 SAMTools SNP 229970 229970 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 229978 229978 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C11%2C33%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.61%2C1.8e-31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold101 SAMTools SNP 230132 230132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C4%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 232035 232035 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C23:26 scaffold101 SAMTools SNP 233148 233148 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.16%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold101 SAMTools SNP 234865 234865 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold101 SAMTools SNP 235990 235990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 239140 239140 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold101 SAMTools SNP 242840 242840 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 242861 242861 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 246248 246248 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C24%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C232:99 scaffold101 SAMTools SNP 246271 246271 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C230:99 scaffold101 SAMTools SNP 248261 248261 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold101 SAMTools SNP 261979 261979 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold101 SAMTools SNP 262213 262213 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold101 SAMTools SNP 262270 262270 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.26%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C74:77 scaffold101 SAMTools SNP 264084 264084 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.38%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold101 SAMTools SNP 264087 264087 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold101 SAMTools SNP 264105 264105 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 264123 264123 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold101 SAMTools SNP 264610 264610 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 264936 264936 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 264978 264978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold101 SAMTools SNP 265510 265510 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold101 SAMTools SNP 265553 265553 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold101 SAMTools SNP 280541 280541 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C227:48 scaffold101 SAMTools SNP 280560 280560 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold101 SAMTools SNP 280561 280561 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold101 SAMTools SNP 280689 280689 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 285912 285912 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 288379 288379 27.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold101 SAMTools SNP 291872 291872 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 291884 291884 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C127%2C166%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 294440 294440 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C20%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C9.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295831 295831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C103%2C0%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C5.6e-35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295851 295851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 295867 295867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C5%2C2%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-26%2C0.033%2C1%2C1.5e-57;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295944 295944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold101 SAMTools SNP 295947 295947 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C73%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0014%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C253:99 scaffold101 SAMTools SNP 296345 296345 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold101 SAMTools SNP 296996 296996 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C308%2C81%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297041 297041 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C75%2C335%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297059 297059 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C325%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297492 297492 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C62%2C146%2C39%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.014%2C3.2e-93%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 297961 297961 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold101 SAMTools SNP 305006 305006 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold101 SAMTools SNP 305774 305774 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C8%2C31%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold101 SAMTools SNP 305879 305879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C145%2C19%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 306273 306273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold101 SAMTools SNP 308453 308453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C3%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C3.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 308489 308489 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0044%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C20:23 scaffold101 SAMTools SNP 309014 309014 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.2%2C6.4e-10%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C99:62 scaffold101 SAMTools SNP 309606 309606 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold101 SAMTools SNP 312478 312478 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold101 SAMTools SNP 312500 312500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold101 SAMTools SNP 315243 315243 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold101 SAMTools SNP 315273 315273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 315354 315354 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C57%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 315816 315816 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.14%2C1e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold101 SAMTools SNP 315817 315817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 315869 315869 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C57%2C51%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.39%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 316441 316441 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 316462 316462 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C52%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 316498 316498 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C0%2C37%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.069%2C0.0012%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold101 SAMTools SNP 316501 316501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.085%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 317586 317586 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 317589 317589 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 317988 317988 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold101 SAMTools SNP 318481 318481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C0%2C152%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 319243 319243 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold101 SAMTools SNP 321107 321107 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C47%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold101 SAMTools SNP 321127 321127 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C153%2C1%2C47%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.24%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold101 SAMTools SNP 328260 328260 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 328349 328349 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 332777 332777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D829%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D271%2C227%2C0%2C327%3BMQ%3D47%3BFQ%3D225%3BPV4%3D2.4e-78%2C9e-10%2C0.00014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 332828 332828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D768%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C472%2C0%2C275%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 334516 334516 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C283%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 334546 334546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold101 SAMTools SNP 334603 334603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D994%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C842%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 335553 335553 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 335590 335590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 335843 335843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2227%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C2%2C982%2C1216%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 341497 341497 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D0.33%2C0.13%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold101 SAMTools SNP 343160 343160 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C21%2C0:39 scaffold101 SAMTools SNP 343623 343623 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold101 SAMTools SNP 343656 343656 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold101 SAMTools SNP 360516 360516 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold101 SAMTools SNP 364719 364719 91.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold101 SAMTools SNP 364934 364934 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold101 SAMTools SNP 386473 386473 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold101 SAMTools SNP 388147 388147 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold101 SAMTools SNP 417528 417528 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 417887 417887 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 420391 420391 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.37%2C3.6e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C118:28 scaffold101 SAMTools SNP 421133 421133 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 421986 421986 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 423436 423436 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 423450 423450 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 550334 550334 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C12%3BMQ%3D48%3BFQ%3D61%3BPV4%3D0.3%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold101 SAMTools SNP 606346 606346 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 610393 610393 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 610551 610551 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 620439 620439 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 620906 620906 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 621527 621527 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 621572 621572 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 640023 640023 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold101 SAMTools SNP 681147 681147 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 682141 682141 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 6603 6603 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 6647 6647 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 6662 6662 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1014 SAMTools SNP 6686 6686 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 25906 25906 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1014 SAMTools SNP 25945 25945 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C239:99 scaffold1014 SAMTools SNP 26863 26863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1014 SAMTools SNP 27090 27090 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1014 SAMTools SNP 36235 36235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1014 SAMTools SNP 36780 36780 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1014 SAMTools SNP 37247 37247 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C293%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37284 37284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37314 37314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C49%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold1014 SAMTools SNP 37455 37455 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37757 37757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C3%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 38062 38062 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 38514 38514 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C61%2C15%2C51%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.042%2C0.056%2C5.1e-08%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 39807 39807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C69%2C15%2C52%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 39816 39816 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C96%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 39854 39854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C39%2C9%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 40496 40496 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.01%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 41077 41077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C42%2C25%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold1014 SAMTools SNP 41113 41113 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C16%2C66%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold1014 SAMTools SNP 41160 41160 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C35%2C69%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C144:99 scaffold1014 SAMTools SNP 43555 43555 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C7.8e-12%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 43604 43604 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C45%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C232:33 scaffold1014 SAMTools SNP 43622 43622 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1014 SAMTools SNP 45308 45308 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1014 SAMTools SNP 45851 45851 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C3.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1014 SAMTools SNP 46260 46260 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 46469 46469 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 49620 49620 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1014 SAMTools SNP 50751 50751 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 52342 52342 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 52493 52493 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1014 SAMTools SNP 52534 52534 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1014 SAMTools SNP 52553 52553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 56627 56627 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 84468 84468 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1014 SAMTools SNP 84663 84663 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1014 SAMTools SNP 87360 87360 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C55:58 scaffold1014 SAMTools SNP 87392 87392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1014 SAMTools SNP 87506 87506 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1014 SAMTools SNP 87809 87809 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1014 SAMTools SNP 88331 88331 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.032%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C126:99 scaffold1014 SAMTools SNP 88364 88364 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1014 SAMTools SNP 88418 88418 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1014 SAMTools SNP 89252 89252 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1014 SAMTools SNP 89258 89258 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.47%2C0.2%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold1014 SAMTools SNP 89351 89351 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 89644 89644 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.33%2C9.6e-33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1014 SAMTools SNP 90069 90069 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1014 SAMTools SNP 90116 90116 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1014 SAMTools SNP 90169 90169 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1014 SAMTools SNP 90739 90739 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C33%2C0:63 scaffold1014 SAMTools SNP 91161 91161 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1014 SAMTools SNP 94350 94350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 96615 96615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1014 SAMTools SNP 98153 98153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1014 SAMTools SNP 98174 98174 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1014 SAMTools SNP 98304 98304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1014 SAMTools SNP 98878 98878 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1014 SAMTools SNP 100029 100029 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C30%2C0:50 scaffold1014 SAMTools SNP 102608 102608 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1014 SAMTools SNP 102616 102616 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold1014 SAMTools SNP 102656 102656 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C239:99 scaffold1014 SAMTools SNP 103107 103107 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C63%2C0:99 scaffold1014 SAMTools SNP 103350 103350 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 106979 106979 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 106985 106985 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 106990 106990 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.061%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1014 SAMTools SNP 107260 107260 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1014 SAMTools SNP 107294 107294 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 108303 108303 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 110194 110194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C35%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1014 SAMTools SNP 110221 110221 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C30%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1014 SAMTools SNP 110236 110236 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C4%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C187%2C0:99 scaffold1014 SAMTools SNP 110344 110344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 111675 111675 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1014 SAMTools SNP 112190 112190 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.21%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 112259 112259 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1014 SAMTools SNP 112271 112271 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 112782 112782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C43%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113108 113108 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113117 113117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C0%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113174 113174 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C60%2C0:99 scaffold1014 SAMTools SNP 113201 113201 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1014 SAMTools SNP 113240 113240 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1014 SAMTools SNP 113595 113595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.065%2C0.29%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1014 SAMTools SNP 113792 113792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 114699 114699 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1014 SAMTools SNP 115397 115397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C86%2C9%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115418 115418 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115451 115451 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115496 115496 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 116455 116455 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C0.18%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117296 117296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117374 117374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117531 117531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C6%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.49%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 118035 118035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 118062 118062 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1014 SAMTools SNP 118412 118412 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D6.6e-05%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1014 SAMTools SNP 118424 118424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D8.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1014 SAMTools SNP 118532 118532 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C1%2C26%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.04%2C0.059%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1014 SAMTools SNP 119082 119082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C36%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119112 119112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119127 119127 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C35%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1014 SAMTools SNP 119145 119145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C41%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119459 119459 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C6%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1014 SAMTools SNP 119462 119462 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119486 119486 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C9%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.00064%2C4.1e-12%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1014 SAMTools SNP 119504 119504 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C34%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1014 SAMTools SNP 119576 119576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C14%2C66%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119849 119849 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C11%2C66%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119966 119966 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C69%2C97%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 120352 120352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 120493 120493 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C27%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C4.2e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1014 SAMTools SNP 120572 120572 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C23%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C41%2C0:79 scaffold1014 SAMTools SNP 120682 120682 19 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1014 SAMTools SNP 123077 123077 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 123474 123474 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 124440 124440 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 124449 124449 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 126471 126471 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1014 SAMTools SNP 126998 126998 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1014 SAMTools SNP 127145 127145 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 127928 127928 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 128129 128129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 128162 128162 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 128492 128492 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1014 SAMTools SNP 128548 128548 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1014 SAMTools SNP 128778 128778 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 129446 129446 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 129554 129554 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1014 SAMTools SNP 129720 129720 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1014 SAMTools SNP 129777 129777 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold1014 SAMTools SNP 129801 129801 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1014 SAMTools SNP 130153 130153 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1014 SAMTools SNP 130204 130204 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1014 SAMTools SNP 132718 132718 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 133558 133558 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1014 SAMTools SNP 133663 133663 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1014 SAMTools SNP 133664 133664 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 133829 133829 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 134615 134615 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1014 SAMTools SNP 134653 134653 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C33%2C0:63 scaffold1014 SAMTools SNP 135718 135718 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 135723 135723 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 136023 136023 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 136053 136053 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 136317 136317 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1014 SAMTools SNP 136652 136652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138370 138370 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138429 138429 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138489 138489 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 140960 140960 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 141624 141624 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C251:33 scaffold1014 SAMTools SNP 142818 142818 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1014 SAMTools SNP 142893 142893 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1014 SAMTools SNP 142928 142928 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1014 SAMTools SNP 145445 145445 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 145456 145456 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 146382 146382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1014 SAMTools SNP 150251 150251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1014 SAMTools SNP 150338 150338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1014 SAMTools SNP 150360 150360 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold1014 SAMTools SNP 153495 153495 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1014 SAMTools SNP 153573 153573 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold1014 SAMTools SNP 154306 154306 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 154848 154848 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1014 SAMTools SNP 154902 154902 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1014 SAMTools SNP 154959 154959 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold1014 SAMTools SNP 155343 155343 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1014 SAMTools SNP 155547 155547 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 155562 155562 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1014 SAMTools SNP 155934 155934 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1014 SAMTools SNP 155965 155965 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.3%2C0.09%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1014 SAMTools SNP 155976 155976 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1014 SAMTools SNP 156894 156894 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C1%2C10%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.066%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1014 SAMTools SNP 156896 156896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1014 SAMTools SNP 156948 156948 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.026%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1014 SAMTools SNP 157092 157092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1014 SAMTools SNP 158940 158940 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 161062 161062 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.12%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1014 SAMTools SNP 161104 161104 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0142%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.026%2C0.00013%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1014 SAMTools SNP 161662 161662 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 161665 161665 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 161695 161695 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 164539 164539 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C41:44 scaffold1014 SAMTools SNP 164610 164610 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1014 SAMTools SNP 164905 164905 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1014 SAMTools SNP 164977 164977 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1014 SAMTools SNP 166319 166319 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1014 SAMTools SNP 166628 166628 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1014 SAMTools SNP 172801 172801 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C0.049%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C216:61 scaffold1014 SAMTools SNP 172807 172807 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.043%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1014 SAMTools SNP 172923 172923 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C242:44 scaffold1014 SAMTools SNP 173871 173871 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1014 SAMTools SNP 173928 173928 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 174434 174434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1014 SAMTools SNP 176467 176467 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1014 SAMTools SNP 177658 177658 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1014 SAMTools SNP 178538 178538 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1014 SAMTools SNP 178555 178555 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1014 SAMTools SNP 180160 180160 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 181439 181439 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0025%2C0.24%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1014 SAMTools SNP 181465 181465 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1014 SAMTools SNP 181467 181467 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0088%2C0.12%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1014 SAMTools SNP 181532 181532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C7.6e-34%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 182223 182223 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C18%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.49%2C1.5e-32%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1014 SAMTools SNP 183464 183464 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C33%2C0:63 scaffold1014 SAMTools SNP 184048 184048 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1014 SAMTools SNP 186696 186696 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0004%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 186757 186757 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1014 SAMTools SNP 187389 187389 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00057%2C2.6e-06%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C249:94 scaffold1014 SAMTools SNP 189246 189246 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1014 SAMTools SNP 189261 189261 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 190392 190392 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1014 SAMTools SNP 191957 191957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1014 SAMTools SNP 191993 191993 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1014 SAMTools SNP 192007 192007 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1014 SAMTools SNP 192445 192445 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1014 SAMTools SNP 192688 192688 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.31%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1014 SAMTools SNP 192702 192702 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C0.12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1014 SAMTools SNP 192727 192727 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C230:99 scaffold1014 SAMTools SNP 192748 192748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1014 SAMTools SNP 193130 193130 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold1014 SAMTools SNP 193272 193272 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0.053%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1014 SAMTools SNP 193328 193328 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 193473 193473 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 193926 193926 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1014 SAMTools SNP 193955 193955 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold1014 SAMTools SNP 194314 194314 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.15%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C147:99 scaffold1014 SAMTools SNP 194386 194386 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold1014 SAMTools SNP 194392 194392 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C208:99 scaffold1014 SAMTools SNP 196704 196704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1014 SAMTools SNP 196748 196748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1014 SAMTools SNP 197536 197536 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C0.0081%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1014 SAMTools SNP 197542 197542 90 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.35%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1014 SAMTools SNP 197555 197555 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.19%2C4.4e-07%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1014 SAMTools SNP 198010 198010 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 198021 198021 78.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold1014 SAMTools SNP 198153 198153 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 198174 198174 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.31%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1014 SAMTools SNP 198514 198514 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C237:99 scaffold1014 SAMTools SNP 198526 198526 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1014 SAMTools SNP 198749 198749 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1014 SAMTools SNP 201706 201706 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.28%3BPV4%3D1%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C42:34 scaffold1014 SAMTools SNP 207604 207604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1014 SAMTools SNP 208578 208578 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 208752 208752 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1014 SAMTools SNP 208887 208887 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1014 SAMTools SNP 209709 209709 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1014 SAMTools SNP 209838 209838 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1014 SAMTools SNP 214626 214626 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1014 SAMTools SNP 214838 214838 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.41%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1014 SAMTools SNP 215114 215114 32.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1014 SAMTools SNP 215514 215514 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 217286 217286 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1014 SAMTools SNP 217319 217319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 226621 226621 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1014 SAMTools SNP 300866 300866 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1014 SAMTools SNP 308085 308085 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.66%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1014 SAMTools SNP 311728 311728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 311739 311739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1014 SAMTools SNP 312616 312616 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1014 SAMTools SNP 323893 323893 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 324027 324027 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 349270 349270 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1014 SAMTools SNP 349545 349545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 349547 349547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C29%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1014 SAMTools SNP 354450 354450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1014 SAMTools SNP 354496 354496 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D1%2C0.26%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C221:54 scaffold1014 SAMTools SNP 365835 365835 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1014 SAMTools SNP 384169 384169 9.08 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1014 SAMTools SNP 385082 385082 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.03%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1014 SAMTools SNP 385482 385482 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold1014 SAMTools SNP 385495 385495 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C3e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C74:77 scaffold1014 SAMTools SNP 385547 385547 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C6.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold1014 SAMTools SNP 388452 388452 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D46%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C96%2C0:99 scaffold1014 SAMTools SNP 388570 388570 73.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold1014 SAMTools SNP 411549 411549 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1014 SAMTools SNP 488982 488982 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1014 SAMTools SNP 490162 490162 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 506847 506847 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1014 SAMTools SNP 506896 506896 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1014 SAMTools SNP 509802 509802 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1014 SAMTools SNP 513444 513444 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1014 SAMTools SNP 580430 580430 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 580441 580441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 580537 580537 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C41:44 scaffold1014 SAMTools SNP 580600 580600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1014 SAMTools SNP 580947 580947 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1014 SAMTools SNP 580976 580976 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.6%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1014 SAMTools SNP 581021 581021 55.8 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1014 SAMTools SNP 581074 581074 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1014 SAMTools SNP 581840 581840 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1014 SAMTools SNP 581852 581852 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 582512 582512 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1014 SAMTools SNP 582518 582518 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 583002 583002 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 583356 583356 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 601226 601226 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1014 SAMTools SNP 601745 601745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 602279 602279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1014 SAMTools SNP 602327 602327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C59%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1014 SAMTools SNP 602663 602663 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1014 SAMTools SNP 607417 607417 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1014 SAMTools SNP 608052 608052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 608060 608060 31.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1014 SAMTools SNP 608673 608673 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 610917 610917 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 610925 610925 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 617742 617742 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 643022 643022 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1014 SAMTools SNP 643070 643070 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 643470 643470 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 998 998 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1044 1044 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1115 1115 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1140 1140 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1684 1684 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1016 SAMTools SNP 2603 2603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1016 SAMTools SNP 3965 3965 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1016 SAMTools SNP 3986 3986 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1016 SAMTools SNP 4041 4041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.052%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 4349 4349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1016 SAMTools SNP 4831 4831 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1016 SAMTools SNP 4843 4843 69.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold1016 SAMTools SNP 4878 4878 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1016 SAMTools SNP 4900 4900 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C224:99 scaffold1016 SAMTools SNP 4921 4921 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.42%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C222:99 scaffold1016 SAMTools SNP 5157 5157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.51%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1016 SAMTools SNP 5551 5551 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1016 SAMTools SNP 6138 6138 49.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1016 SAMTools SNP 6585 6585 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1016 SAMTools SNP 6987 6987 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1016 SAMTools SNP 9771 9771 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold1016 SAMTools SNP 9778 9778 7.79 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-67;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C215%2C255%2C0%2C247:44 scaffold1016 SAMTools SNP 11970 11970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C15%2C89%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 12066 12066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C121%2C17%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 15166 15166 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C12%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.32%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1016 SAMTools SNP 15992 15992 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1016 SAMTools SNP 28327 28327 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1016 SAMTools SNP 30318 30318 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 30366 30366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 33138 33138 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold1016 SAMTools SNP 33159 33159 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C124:99 scaffold1016 SAMTools SNP 145580 145580 40.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1016 SAMTools SNP 152016 152016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 153956 153956 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1016 SAMTools SNP 154575 154575 205 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C30%2C9%2C226%2C0%2C223:39 scaffold1016 SAMTools SNP 154587 154587 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1016 SAMTools SNP 167050 167050 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1016 SAMTools SNP 167906 167906 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 169177 169177 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C40:43 scaffold1016 SAMTools SNP 182197 182197 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1016 SAMTools SNP 182236 182236 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C24%2C0:38 scaffold1016 SAMTools SNP 182596 182596 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D0.33%2C0.048%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold1016 SAMTools SNP 182621 182621 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C38:41 scaffold1016 SAMTools SNP 182677 182677 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1016 SAMTools SNP 183070 183070 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D5.33%3BPV4%3D0.33%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C32:34 scaffold1016 SAMTools SNP 183243 183243 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1016 SAMTools SNP 183504 183504 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D6.96%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C33:36 scaffold1016 SAMTools SNP 183881 183881 24.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1016 SAMTools SNP 228203 228203 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1016 SAMTools SNP 239222 239222 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1016 SAMTools SNP 269501 269501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 272602 272602 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1016 SAMTools SNP 273723 273723 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.12%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 273781 273781 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1016 SAMTools SNP 429483 429483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1016 SAMTools SNP 432406 432406 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1016 SAMTools SNP 432415 432415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 433374 433374 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1016 SAMTools SNP 433659 433659 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C9%2C1%3BMQ%3D42%3BFQ%3D20.1%3BPV4%3D1%2C9.5e-19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C178:50 scaffold1016 SAMTools SNP 434210 434210 75.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold1016 SAMTools SNP 434850 434850 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C253:44 scaffold1016 SAMTools SNP 434880 434880 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C0%3BMQ%3D44%3BFQ%3D21%3BPV4%3D1%2C1%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1016 SAMTools SNP 434896 434896 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C7%2C1%3BMQ%3D46%3BFQ%3D39%3BPV4%3D0.22%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C228:69 scaffold1016 SAMTools SNP 434994 434994 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C17%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.0031%2C1.2e-35%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1016 SAMTools SNP 435045 435045 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1016 SAMTools SNP 435360 435360 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1016 SAMTools SNP 435371 435371 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C111:77 scaffold1016 SAMTools SNP 435378 435378 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D37%3BFQ%3D39%3BPV4%3D1%2C1%2C0.097%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C66:69 scaffold1016 SAMTools SNP 435384 435384 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D38%3BFQ%3D28%3BPV4%3D1%2C0.07%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C149:58 scaffold1016 SAMTools SNP 436774 436774 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C8%3BMQ%3D45%3BFQ%3D109%3BPV4%3D1%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C233:99 scaffold1016 SAMTools SNP 436803 436803 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C226:44 scaffold1016 SAMTools SNP 438817 438817 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 438818 438818 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 439004 439004 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 439041 439041 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 443548 443548 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold1016 SAMTools SNP 443869 443869 25.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1016 SAMTools SNP 462034 462034 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1017 SAMTools SNP 2155 2155 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 2243 2243 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1017 SAMTools SNP 11434 11434 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold1017 SAMTools SNP 17816 17816 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1017 SAMTools SNP 19197 19197 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C6%2C0%3BMQ%3D48%3BFQ%3D43%3BPV4%3D0.3%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1017 SAMTools SNP 19251 19251 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C7%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 19305 19305 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1017 SAMTools SNP 24279 24279 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C3%2C46%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.26%2C0.017%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1017 SAMTools SNP 24292 24292 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C36%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1017 SAMTools SNP 24322 24322 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C25%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1017 SAMTools SNP 24360 24360 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1017 SAMTools SNP 28845 28845 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1017 SAMTools SNP 29089 29089 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.59%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C231:53 scaffold1017 SAMTools SNP 29190 29190 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 29514 29514 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C134:51 scaffold1017 SAMTools SNP 29586 29586 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 31876 31876 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C32:35 scaffold1017 SAMTools SNP 46291 46291 56.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold1017 SAMTools SNP 46471 46471 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1017 SAMTools SNP 52389 52389 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 61321 61321 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1017 SAMTools SNP 61323 61323 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1017 SAMTools SNP 62259 62259 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 62463 62463 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 80365 80365 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C13%2C72%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.84%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 80557 80557 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C11%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.46%2C9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1017 SAMTools SNP 94855 94855 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C5%3BMQ%3D45%3BFQ%3D219%3BPV4%3D0.42%2C0.069%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1017 SAMTools SNP 97065 97065 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C26%2C19%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C5.1e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1017 SAMTools SNP 97968 97968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C121%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.018%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 98007 98007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C92%2C129%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.48%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 100267 100267 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D1%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C99%2C0:63 scaffold1017 SAMTools SNP 100767 100767 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C290%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 100820 100820 17.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0%2C48%2C1%2C45:6 scaffold1017 SAMTools SNP 101557 101557 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C76%2C3%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.4%2C0.0086%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1017 SAMTools SNP 102047 102047 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C48%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102050 102050 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C16%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102082 102082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C22%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102138 102138 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C15%2C49%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102575 102575 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 106264 106264 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C17%2C62%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107006 107006 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C62%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107075 107075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C18%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107090 107090 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 107481 107481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C19%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1017 SAMTools SNP 108151 108151 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 109033 109033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 109484 109484 101 . . REF=T;ALT=A,G,C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0%2C119%2C4%2C116%2C129%2C14%2C110%2C126:57 scaffold1017 SAMTools SNP 109910 109910 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1017 SAMTools SNP 111514 111514 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 111548 111548 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 111561 111561 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 112506 112506 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C5%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1017 SAMTools SNP 112522 112522 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C17%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.2%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 112884 112884 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 113317 113317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1017 SAMTools SNP 113323 113323 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C12%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0019%2C0.36%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 113677 113677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C41%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1017 SAMTools SNP 113794 113794 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C64:67 scaffold1017 SAMTools SNP 114123 114123 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 114176 114176 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1017 SAMTools SNP 114225 114225 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C12%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1017 SAMTools SNP 114246 114246 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C10%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 114991 114991 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C5%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.4%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 115033 115033 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.038%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 116067 116067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 116137 116137 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.66%2C3.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 116241 116241 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 124146 124146 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C79%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C255%2C0:99 scaffold1017 SAMTools SNP 124728 124728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D48%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1017 SAMTools SNP 126648 126648 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D26%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0017%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 128054 128054 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C19%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D3.1e-06%2C2.8e-11%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1017 SAMTools SNP 128072 128072 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C9%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0016%2C9.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1017 SAMTools SNP 128289 128289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.066%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 131731 131731 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1017 SAMTools SNP 132689 132689 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C16%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1017 SAMTools SNP 144003 144003 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C0%2C10%3BMQ%3D41%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C213:99 scaffold1017 SAMTools SNP 144221 144221 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C7%3BMQ%3D32%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C194:55 scaffold1017 SAMTools SNP 147573 147573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 147636 147636 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 147660 147660 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.6e-09%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C198:59 scaffold1017 SAMTools SNP 148214 148214 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C240:82 scaffold1017 SAMTools SNP 153028 153028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 153304 153304 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 154849 154849 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.57%2C9.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1017 SAMTools SNP 155038 155038 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.39%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1017 SAMTools SNP 156815 156815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 157405 157405 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 158662 158662 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C2%2C13%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1017 SAMTools SNP 158670 158670 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1017 SAMTools SNP 158719 158719 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1017 SAMTools SNP 159048 159048 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1017 SAMTools SNP 162125 162125 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1017 SAMTools SNP 162667 162667 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 162668 162668 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 162690 162690 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1017 SAMTools SNP 163077 163077 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 163082 163082 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 163793 163793 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1017 SAMTools SNP 167793 167793 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 167799 167799 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C5%2C22%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.062%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1017 SAMTools SNP 168032 168032 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C37%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 168418 168418 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C5%3BMQ%3D42%3BFQ%3D14.2%3BPV4%3D0.055%2C0.47%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C252:43 scaffold1017 SAMTools SNP 179514 179514 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C160%2C0:99 scaffold1017 SAMTools SNP 179564 179564 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C151%2C0:99 scaffold1017 SAMTools SNP 179823 179823 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C218:57 scaffold1017 SAMTools SNP 179892 179892 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.26%2C1.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C227:99 scaffold1017 SAMTools SNP 180400 180400 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.17%2C6e-21%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1017 SAMTools SNP 181715 181715 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 182129 182129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186115 186115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186331 186331 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186934 186934 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1017 SAMTools SNP 186935 186935 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1017 SAMTools SNP 186936 186936 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.22%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1017 SAMTools SNP 186950 186950 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 187000 187000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 187239 187239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C17%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1017 SAMTools SNP 187953 187953 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 187964 187964 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.32%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C251:54 scaffold1017 SAMTools SNP 188175 188175 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold1017 SAMTools SNP 188372 188372 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1017 SAMTools SNP 188460 188460 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.56%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C246:99 scaffold1017 SAMTools SNP 188681 188681 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1017 SAMTools SNP 188682 188682 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C10%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.001%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1017 SAMTools SNP 188862 188862 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C27%2C0:51 scaffold1017 SAMTools SNP 189516 189516 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.2%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C29:32 scaffold1017 SAMTools SNP 189781 189781 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.22%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1017 SAMTools SNP 190132 190132 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C8%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.71%2C8.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1017 SAMTools SNP 190391 190391 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C54%2C0:99 scaffold1017 SAMTools SNP 190478 190478 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C120%2C0:99 scaffold1017 SAMTools SNP 190517 190517 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C63%2C0:99 scaffold1017 SAMTools SNP 190586 190586 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 190595 190595 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 190799 190799 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 191113 191113 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 191719 191719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 191722 191722 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 192150 192150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 205765 205765 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D28%3BFQ%3D23%3BPV4%3D1%2C0.22%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C50:53 scaffold1017 SAMTools SNP 205920 205920 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 205970 205970 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1017 SAMTools SNP 206497 206497 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 213010 213010 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold1017 SAMTools SNP 213040 213040 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 213691 213691 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.48%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 213721 213721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214081 214081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214087 214087 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214265 214265 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.27%2C0.0011%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1017 SAMTools SNP 214285 214285 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 214642 214642 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.45%2C0.19%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 214653 214653 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 214739 214739 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214965 214965 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1017 SAMTools SNP 215025 215025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 215468 215468 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 215495 215495 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.15%2C0.025%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1017 SAMTools SNP 215591 215591 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1017 SAMTools SNP 215955 215955 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.37%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C190:99 scaffold1017 SAMTools SNP 215975 215975 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 215994 215994 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 216620 216620 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 216650 216650 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C36%2C0:69 scaffold1017 SAMTools SNP 216699 216699 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1017 SAMTools SNP 216722 216722 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.2%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold1017 SAMTools SNP 217155 217155 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 219638 219638 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 219653 219653 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 220038 220038 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1017 SAMTools SNP 220075 220075 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 220089 220089 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0071%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C228:99 scaffold1017 SAMTools SNP 220136 220136 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1017 SAMTools SNP 220161 220161 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1017 SAMTools SNP 220191 220191 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1017 SAMTools SNP 220200 220200 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1017 SAMTools SNP 221452 221452 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 221820 221820 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1017 SAMTools SNP 222209 222209 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C7:10 scaffold1017 SAMTools SNP 222303 222303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1017 SAMTools SNP 222575 222575 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 222586 222586 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 223028 223028 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 223061 223061 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1017 SAMTools SNP 223103 223103 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1017 SAMTools SNP 223353 223353 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 223357 223357 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 223461 223461 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 223656 223656 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 223710 223710 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1017 SAMTools SNP 224394 224394 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1017 SAMTools SNP 224457 224457 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1017 SAMTools SNP 224469 224469 49.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1017 SAMTools SNP 224502 224502 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.028%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C53:56 scaffold1017 SAMTools SNP 224523 224523 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.05%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C10%2C0:17 scaffold1017 SAMTools SNP 225037 225037 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C72%2C0:99 scaffold1017 SAMTools SNP 226032 226032 43.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1017 SAMTools SNP 226386 226386 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C226:99 scaffold1017 SAMTools SNP 226410 226410 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1017 SAMTools SNP 226640 226640 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.007%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1017 SAMTools SNP 226693 226693 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1017 SAMTools SNP 226831 226831 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 227314 227314 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.063%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 227326 227326 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1017 SAMTools SNP 227589 227589 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1017 SAMTools SNP 227598 227598 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C9%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.77%2C1.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 227616 227616 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.37%2C0.096%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1017 SAMTools SNP 227779 227779 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C17%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1017 SAMTools SNP 227931 227931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1017 SAMTools SNP 227972 227972 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 227978 227978 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 227990 227990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 228008 228008 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 228350 228350 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 228443 228443 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold1017 SAMTools SNP 228637 228637 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 228640 228640 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 228646 228646 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1017 SAMTools SNP 228685 228685 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 228697 228697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 228889 228889 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 228910 228910 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C21%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.78%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1017 SAMTools SNP 228943 228943 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C6%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.21%2C6.3e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 228982 228982 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1017 SAMTools SNP 229344 229344 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.54%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1017 SAMTools SNP 229359 229359 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.43%2C0.21%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C134:99 scaffold1017 SAMTools SNP 229383 229383 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1017 SAMTools SNP 229784 229784 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 229808 229808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1017 SAMTools SNP 229904 229904 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1017 SAMTools SNP 230250 230250 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C30:33 scaffold1017 SAMTools SNP 230254 230254 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1017 SAMTools SNP 230272 230272 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold1017 SAMTools SNP 231176 231176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1017 SAMTools SNP 231227 231227 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C4%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1017 SAMTools SNP 231564 231564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 231598 231598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C8%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D7.8e-05%2C0.012%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1017 SAMTools SNP 232058 232058 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 232067 232067 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 232142 232142 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 234709 234709 34.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold1017 SAMTools SNP 234763 234763 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1017 SAMTools SNP 234772 234772 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C174:99 scaffold1017 SAMTools SNP 235012 235012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 235225 235225 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1017 SAMTools SNP 235234 235234 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold1017 SAMTools SNP 235243 235243 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.049%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1017 SAMTools SNP 235255 235255 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 235560 235560 156 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66%2C197%2C0%2C191:39 scaffold1017 SAMTools SNP 235769 235769 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.2%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1017 SAMTools SNP 235790 235790 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 235793 235793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 235954 235954 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1017 SAMTools SNP 236026 236026 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold1017 SAMTools SNP 236269 236269 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1017 SAMTools SNP 236320 236320 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1017 SAMTools SNP 236383 236383 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1017 SAMTools SNP 236393 236393 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1017 SAMTools SNP 236728 236728 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C21%2C0:39 scaffold1017 SAMTools SNP 236749 236749 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1017 SAMTools SNP 236852 236852 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 236863 236863 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1017 SAMTools SNP 236866 236866 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold1017 SAMTools SNP 237618 237618 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1017 SAMTools SNP 237876 237876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 237891 237891 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 238234 238234 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 238255 238255 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 238667 238667 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.24%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold1017 SAMTools SNP 238670 238670 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1017 SAMTools SNP 239017 239017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1017 SAMTools SNP 239090 239090 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.0023%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1017 SAMTools SNP 239119 239119 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1017 SAMTools SNP 239510 239510 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1017 SAMTools SNP 239516 239516 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 239582 239582 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C202:99 scaffold1017 SAMTools SNP 239811 239811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C17%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.15%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1017 SAMTools SNP 240171 240171 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold1017 SAMTools SNP 240215 240215 96.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold1017 SAMTools SNP 240252 240252 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1017 SAMTools SNP 240532 240532 60 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C213%2C162%2C255%2C0%2C241:98 scaffold1017 SAMTools SNP 240929 240929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1017 SAMTools SNP 241314 241314 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C9:12 scaffold1017 SAMTools SNP 241359 241359 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1017 SAMTools SNP 241398 241398 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1017 SAMTools SNP 241695 241695 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 241742 241742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 241745 241745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 244859 244859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 245215 245215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C18%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1017 SAMTools SNP 249565 249565 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 253637 253637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 253641 253641 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 253960 253960 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1017 SAMTools SNP 254551 254551 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 254939 254939 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 256125 256125 80.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold1017 SAMTools SNP 256170 256170 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.38%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C170:99 scaffold1017 SAMTools SNP 256191 256191 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 256480 256480 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold1017 SAMTools SNP 256543 256543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 256657 256657 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 256768 256768 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C75%2C0:99 scaffold1017 SAMTools SNP 256811 256811 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold1017 SAMTools SNP 257027 257027 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C20%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.53%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold1017 SAMTools SNP 257028 257028 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.53%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1017 SAMTools SNP 257052 257052 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold1017 SAMTools SNP 257410 257410 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 258124 258124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 258430 258430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 259365 259365 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1017 SAMTools SNP 259374 259374 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.65%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1017 SAMTools SNP 260758 260758 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C18%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C33:36 scaffold1017 SAMTools SNP 260776 260776 222 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0%2C247%2C31%2C244:99 scaffold1017 SAMTools SNP 260779 260779 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.41%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1017 SAMTools SNP 261384 261384 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1017 SAMTools SNP 261387 261387 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1017 SAMTools SNP 261516 261516 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C21:24 scaffold1017 SAMTools SNP 261872 261872 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 261895 261895 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1017 SAMTools SNP 261926 261926 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 261983 261983 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1017 SAMTools SNP 265899 265899 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1017 SAMTools SNP 267311 267311 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1017 SAMTools SNP 267377 267377 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 267401 267401 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0:63 scaffold1017 SAMTools SNP 267410 267410 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.15%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1017 SAMTools SNP 267464 267464 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 268512 268512 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1017 SAMTools SNP 268560 268560 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1017 SAMTools SNP 268623 268623 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0063%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C3.2e-05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 268644 268644 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 268653 268653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 268972 268972 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 270073 270073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1017 SAMTools SNP 270085 270085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1017 SAMTools SNP 270175 270175 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C126%2C0:99 scaffold1017 SAMTools SNP 270229 270229 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1017 SAMTools SNP 270568 270568 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 271132 271132 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 271150 271150 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1017 SAMTools SNP 271361 271361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 271364 271364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1017 SAMTools SNP 272363 272363 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1017 SAMTools SNP 272369 272369 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 272880 272880 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.59%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1017 SAMTools SNP 273353 273353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 273689 273689 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 273751 273751 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C10%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0017%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1017 SAMTools SNP 274269 274269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 275660 275660 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C25%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D0.49%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold1017 SAMTools SNP 275714 275714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1017 SAMTools SNP 276347 276347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C4%2C268%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D3e-26%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 276376 276376 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C269%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 276392 276392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1017 SAMTools SNP 276595 276595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 276615 276615 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C18%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C68:71 scaffold1017 SAMTools SNP 279067 279067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1017 SAMTools SNP 279109 279109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C15%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 282568 282568 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C41%2C8%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D6e-05%2C0.24%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1017 SAMTools SNP 282574 282574 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.00016%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 282586 282586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C15%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold1017 SAMTools SNP 282607 282607 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C13%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.29%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1017 SAMTools SNP 282677 282677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1017 SAMTools SNP 283133 283133 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C4%3BMQ%3D46%3BFQ%3D131%3BPV4%3D0.0016%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C210:99 scaffold1017 SAMTools SNP 283157 283157 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1017 SAMTools SNP 283169 283169 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C39%2C0:75 scaffold1017 SAMTools SNP 283247 283247 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1017 SAMTools SNP 283250 283250 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C0%3BMQ%3D47%3BFQ%3D55%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 284209 284209 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 284314 284314 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C33%2C0:63 scaffold1017 SAMTools SNP 285855 285855 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C27%2C22%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 286034 286034 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C34%2C11%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.094%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1017 SAMTools SNP 286181 286181 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C58%2C7%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.056%2C4e-08%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1017 SAMTools SNP 286652 286652 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C54%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 286671 286671 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 288900 288900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 290059 290059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C19%2C15%3BMQ%3D49%3BFQ%3D24%3BPV4%3D0.14%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1017 SAMTools SNP 290095 290095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1017 SAMTools SNP 292799 292799 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0011%2C2.1e-08%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1017 SAMTools SNP 292805 292805 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.58%2C0.074%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1017 SAMTools SNP 293143 293143 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 293160 293160 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C59:62 scaffold1017 SAMTools SNP 293251 293251 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C217:99 scaffold1017 SAMTools SNP 298225 298225 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 299017 299017 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 299376 299376 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1017 SAMTools SNP 299724 299724 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 299745 299745 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 300125 300125 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 300128 300128 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 300923 300923 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1017 SAMTools SNP 301846 301846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.011%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1017 SAMTools SNP 304063 304063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 304090 304090 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C232:99 scaffold1017 SAMTools SNP 304116 304116 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1017 SAMTools SNP 304579 304579 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 312204 312204 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 312243 312243 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 312255 312255 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 312674 312674 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 312677 312677 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 315625 315625 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 315631 315631 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 315649 315649 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 318059 318059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318114 318114 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D67.8%3BPV4%3D0.17%2C0.24%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C109:98 scaffold1017 SAMTools SNP 318245 318245 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318249 318249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318560 318560 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C20%2C53%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.053%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1017 SAMTools SNP 318802 318802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C20%2C74%2C140%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318832 318832 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C100%2C37%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318892 318892 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C144%2C12%2C14%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1017 SAMTools SNP 318943 318943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C68%2C27%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319114 319114 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C62%2C2%2C29%3BMQ%3D50%3BFQ%3D143%3BPV4%3D3.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1017 SAMTools SNP 319144 319144 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C62%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319625 319625 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 319631 319631 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 319649 319649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 319659 319659 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 319836 319836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C8%2C136%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319929 319929 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C142%2C43%2C173%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 320485 320485 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C80%2C2%2C68%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1.1e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 323698 323698 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1017 SAMTools SNP 325335 325335 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 325815 325815 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 325962 325962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 326143 326143 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.015%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 326451 326451 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 326597 326597 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C173:99 scaffold1017 SAMTools SNP 326602 326602 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1017 SAMTools SNP 326639 326639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.56%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1017 SAMTools SNP 326851 326851 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 327139 327139 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.23%2C0.22%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1017 SAMTools SNP 327243 327243 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1017 SAMTools SNP 327334 327334 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1017 SAMTools SNP 327367 327367 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C166:99 scaffold1017 SAMTools SNP 327382 327382 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C188:99 scaffold1017 SAMTools SNP 327603 327603 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C160:99 scaffold1017 SAMTools SNP 327609 327609 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 327621 327621 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.2%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C226:59 scaffold1017 SAMTools SNP 327630 327630 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C79:82 scaffold1017 SAMTools SNP 327651 327651 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold1017 SAMTools SNP 328050 328050 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 328194 328194 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 328203 328203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 328435 328435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1017 SAMTools SNP 328453 328453 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C37%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0013%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1017 SAMTools SNP 328592 328592 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C37%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1017 SAMTools SNP 328856 328856 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C114%2C0:99 scaffold1017 SAMTools SNP 329630 329630 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1017 SAMTools SNP 333953 333953 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 333967 333967 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C244:99 scaffold1017 SAMTools SNP 333991 333991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C315%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 338656 338656 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold1017 SAMTools SNP 338992 338992 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D891%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C26%2C0:49 scaffold1017 SAMTools SNP 339067 339067 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D855%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0026%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C32:35 scaffold1017 SAMTools SNP 339100 339100 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1200%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C60%2C0:99 scaffold1017 SAMTools SNP 339184 339184 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1384%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C1145%2C186%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.2e-36%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 339208 339208 62 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D1651%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C53%2C6%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C7e-19%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C108%2C0%2C64%2C60%2C80:99 scaffold1017 SAMTools SNP 339238 339238 59.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2344%3BVDB%3D0.0057%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.18%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C7:10 scaffold1017 SAMTools SNP 339442 339442 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D822%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold1017 SAMTools SNP 340227 340227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C67%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 340240 340240 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C37%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 341458 341458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D990%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D507%2C3%2C477%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.053%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 343062 343062 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C484%2C5%2C240%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C2.3e-06%2C9.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 343077 343077 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C327%2C5%2C72%3BMQ%3D49%3BFQ%3D39%3BPV4%3D0.56%2C1%2C2.1e-12%2C1.1e-34;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1017 SAMTools SNP 343089 343089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C2%2C8%2C253%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D2.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 343131 343131 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C64%2C0%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.42%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C200:85 scaffold1017 SAMTools SNP 344058 344058 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D855%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C35%2C0:67 scaffold1017 SAMTools SNP 344182 344182 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C15%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C3.2e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 356252 356252 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.09%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 356311 356311 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 365792 365792 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1017 SAMTools SNP 365990 365990 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C62%2C79%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1.6e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 366112 366112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 366639 366639 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1017 SAMTools SNP 366722 366722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1017 SAMTools SNP 370840 370840 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C56%2C9%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 370851 370851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C38%2C14%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 370896 370896 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C65%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372265 372265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C14%2C50%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372295 372295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C22%2C41%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372322 372322 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C32%2C60%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-09%2C0.021%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372337 372337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 373225 373225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 373263 373263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 373278 373278 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 373677 373677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C32%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1017 SAMTools SNP 373710 373710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C10%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1017 SAMTools SNP 373887 373887 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C0.072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 374938 374938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C37%2C36%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C0.048%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 377060 377060 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 377225 377225 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold1017 SAMTools SNP 377860 377860 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C16%2C35%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.35%2C3.3e-121%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1017 SAMTools SNP 378098 378098 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C111%2C61%2C101%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.49%2C1.7e-236%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1017 SAMTools SNP 378137 378137 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold1017 SAMTools SNP 378164 378164 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C0%2C42%3BMQ%3D50%3BFQ%3D26%3BPV4%3D9.7e-06%2C7.8e-19%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1017 SAMTools SNP 378425 378425 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D48%3BFQ%3D-50%3BPV4%3D1%2C0.0085%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C23%2C0:43 scaffold1017 SAMTools SNP 378847 378847 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 380312 380312 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C17%2C37%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.3%2C1.5e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1017 SAMTools SNP 380689 380689 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold1017 SAMTools SNP 381799 381799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 382044 382044 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 382079 382079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 382759 382759 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1017 SAMTools SNP 383412 383412 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 384485 384485 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1017 SAMTools SNP 384575 384575 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1017 SAMTools SNP 385676 385676 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.077%2C0.34%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 386124 386124 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1017 SAMTools SNP 386924 386924 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold1017 SAMTools SNP 386993 386993 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.61%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1017 SAMTools SNP 387381 387381 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1017 SAMTools SNP 388157 388157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 388418 388418 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 388420 388420 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 389159 389159 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 389174 389174 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1017 SAMTools SNP 389249 389249 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1017 SAMTools SNP 389399 389399 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C180:99 scaffold1017 SAMTools SNP 391498 391498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1017 SAMTools SNP 391546 391546 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 391801 391801 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold1017 SAMTools SNP 392245 392245 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1017 SAMTools SNP 392290 392290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0023%2C0.008%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1017 SAMTools SNP 392300 392300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 392335 392335 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold1017 SAMTools SNP 392612 392612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 392937 392937 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 395026 395026 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 395041 395041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 395178 395178 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 423389 423389 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 423392 423392 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 429674 429674 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1017 SAMTools SNP 429714 429714 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1017 SAMTools SNP 429915 429915 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1017 SAMTools SNP 429933 429933 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1017 SAMTools SNP 430747 430747 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1017 SAMTools SNP 430844 430844 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 431419 431419 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 431683 431683 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C5%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.39%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 431785 431785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1017 SAMTools SNP 431804 431804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.13%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433029 433029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433035 433035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433371 433371 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.5%2C2.7e-07%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1017 SAMTools SNP 433401 433401 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 433408 433408 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 446078 446078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446431 446431 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446479 446479 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.074%2C0.035%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1017 SAMTools SNP 446482 446482 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.62%2C0.066%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1017 SAMTools SNP 446703 446703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446751 446751 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.3%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1017 SAMTools SNP 447227 447227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.14%2C0.00052%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1017 SAMTools SNP 449087 449087 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1017 SAMTools SNP 450593 450593 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 451585 451585 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 451946 451946 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 451948 451948 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 452050 452050 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452290 452290 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 452324 452324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 452332 452332 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452342 452342 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452585 452585 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 461737 461737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 461749 461749 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 461942 461942 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00064%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 462183 462183 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.13%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 462246 462246 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C3%2C6%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1017 SAMTools SNP 462264 462264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 464669 464669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C46%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 464840 464840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1017 SAMTools SNP 465273 465273 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C84%2C35%2C23%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1e-05%2C1.9e-71%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 465285 465285 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C129%2C35%2C60%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00046%2C1.3e-138%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1017 SAMTools SNP 465318 465318 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C123%2C7%2C141%3BMQ%3D50%3BFQ%3D66%3BPV4%3D4.8e-06%2C3.7e-218%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1017 SAMTools SNP 465399 465399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C60%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1017 SAMTools SNP 465423 465423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 465435 465435 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C7%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0039%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1017 SAMTools SNP 465577 465577 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1017 SAMTools SNP 466269 466269 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C9.9e-06%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1017 SAMTools SNP 466272 466272 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C0:57 scaffold1017 SAMTools SNP 466305 466305 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C11%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.1%2C1.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1017 SAMTools SNP 473787 473787 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 474964 474964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 474973 474973 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1017 SAMTools SNP 475066 475066 23.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1017 SAMTools SNP 475450 475450 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C51%2C0:99 scaffold1017 SAMTools SNP 475852 475852 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C30%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.51%2C4.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1017 SAMTools SNP 475906 475906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 475917 475917 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 476786 476786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 477131 477131 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.36%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1017 SAMTools SNP 481490 481490 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1017 SAMTools SNP 481746 481746 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1017 SAMTools SNP 483752 483752 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 484616 484616 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 484846 484846 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1017 SAMTools SNP 484848 484848 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1017 SAMTools SNP 485230 485230 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C237:69 scaffold1017 SAMTools SNP 486300 486300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1017 SAMTools SNP 486915 486915 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 487206 487206 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1017 SAMTools SNP 487719 487719 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.67%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C251:99 scaffold1017 SAMTools SNP 487986 487986 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1017 SAMTools SNP 488275 488275 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1017 SAMTools SNP 499122 499122 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 499256 499256 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 499313 499313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 500643 500643 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 500688 500688 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 500706 500706 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 502700 502700 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 507759 507759 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 508065 508065 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 508263 508263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 508322 508322 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514717 514717 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 514750 514750 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 514777 514777 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514783 514783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514799 514799 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1017 SAMTools SNP 515071 515071 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 515548 515548 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold1017 SAMTools SNP 515575 515575 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1017 SAMTools SNP 516066 516066 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1017 SAMTools SNP 516126 516126 56.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1017 SAMTools SNP 522497 522497 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 522509 522509 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 532147 532147 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 532174 532174 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 533867 533867 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.01%2C1%2C1%2C4.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 533930 533930 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C252:99 scaffold1017 SAMTools SNP 534924 534924 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 540535 540535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C22%2C32%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 540559 540559 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C6%2C71%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 542564 542564 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 542949 542949 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C27%2C44%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 543000 543000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 543305 543305 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C32%2C31%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.3e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 543532 543532 54.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1017 SAMTools SNP 544618 544618 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C30%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 545007 545007 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C3%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1017 SAMTools SNP 545019 545019 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C3%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1017 SAMTools SNP 555236 555236 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1017 SAMTools SNP 557672 557672 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C38%2C91%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.16%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1017 SAMTools SNP 559214 559214 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C45%2C48%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D3.5e-07%2C7e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1017 SAMTools SNP 559649 559649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C122%2C8%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 559688 559688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C77%2C4%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 560087 560087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 560096 560096 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 560117 560117 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 560126 560126 190 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C30%2C0%2C204%2C0%2C201:57 scaffold1017 SAMTools SNP 560609 560609 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 560670 560670 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C84%2C0:99 scaffold1017 SAMTools SNP 568364 568364 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.4e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1017 SAMTools SNP 568640 568640 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1017 SAMTools SNP 569712 569712 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold1017 SAMTools SNP 569718 569718 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1017 SAMTools SNP 570546 570546 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1017 SAMTools SNP 570817 570817 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.15%2C0.18%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1017 SAMTools SNP 570823 570823 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C0.14%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1017 SAMTools SNP 570847 570847 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 572909 572909 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C12%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.26%2C5.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1017 SAMTools SNP 573279 573279 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 576503 576503 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1017 SAMTools SNP 577084 577084 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1017 SAMTools SNP 577905 577905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 577920 577920 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0028%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1017 SAMTools SNP 577953 577953 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 577980 577980 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0025%2C0.37%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1017 SAMTools SNP 578001 578001 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C11%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.027%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1017 SAMTools SNP 578034 578034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C13%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1017 SAMTools SNP 578358 578358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C59%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1017 SAMTools SNP 578401 578401 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.23%2C1%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1017 SAMTools SNP 578403 578403 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.19%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1017 SAMTools SNP 578707 578707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1017 SAMTools SNP 579674 579674 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C72%2C7%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 580415 580415 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C60%2C44%2C58%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.23%2C1.6e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1017 SAMTools SNP 582134 582134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C405%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 587939 587939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 588329 588329 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 588370 588370 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 590844 590844 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C189:62 scaffold1017 SAMTools SNP 590852 590852 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 591893 591893 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1017 SAMTools SNP 591911 591911 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 602852 602852 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 627423 627423 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 645847 645847 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1017 SAMTools SNP 646840 646840 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C227:99 scaffold1017 SAMTools SNP 647465 647465 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1017 SAMTools SNP 647638 647638 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 647657 647657 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C217:99 scaffold1017 SAMTools SNP 656302 656302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 657576 657576 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.28%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1017 SAMTools SNP 657607 657607 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 660349 660349 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 662065 662065 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 662317 662317 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 662347 662347 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1017 SAMTools SNP 664286 664286 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 702625 702625 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 703602 703602 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.59%2C4.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C234:57 scaffold1017 SAMTools SNP 703677 703677 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.037%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1017 SAMTools SNP 714762 714762 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold1017 SAMTools SNP 714976 714976 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C219:53 scaffold1017 SAMTools SNP 715210 715210 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 715501 715501 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1017 SAMTools SNP 734294 734294 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 736104 736104 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold1017 SAMTools SNP 736137 736137 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 736139 736139 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold1017 SAMTools SNP 736479 736479 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C135:99 scaffold1017 SAMTools SNP 736959 736959 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 740855 740855 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C255%2C0:99 scaffold1017 SAMTools SNP 742629 742629 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.32%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 742900 742900 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 742901 742901 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 742917 742917 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 742979 742979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 743675 743675 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1017 SAMTools SNP 743783 743783 196 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C226%2C0%2C223:39 scaffold1017 SAMTools SNP 743968 743968 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C75%2C0:99 scaffold1017 SAMTools SNP 744439 744439 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1017 SAMTools SNP 744678 744678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 747568 747568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C21%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1017 SAMTools SNP 747742 747742 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1017 SAMTools SNP 747743 747743 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.26%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 748314 748314 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 748923 748923 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C21%2C30%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.83%2C1.8e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1017 SAMTools SNP 749040 749040 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C63%2C35%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1.8e-16%2C1.7e-46%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1017 SAMTools SNP 749190 749190 37.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1017 SAMTools SNP 749331 749331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C51%3BMQ%3D49%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1017 SAMTools SNP 751465 751465 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752454 752454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C33%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1017 SAMTools SNP 752792 752792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C10%2C119%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C2.5e-33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752888 752888 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C103%2C1%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.46%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752964 752964 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 753324 753324 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C70%2C16%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 754201 754201 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1017 SAMTools SNP 754219 754219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 754921 754921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 754951 754951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C27%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C1%2C0.006%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 755944 755944 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C33%2C6%2C27%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0022%2C0.099%2C0.0033%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 757388 757388 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C15%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1017 SAMTools SNP 758083 758083 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C18%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.63%2C1%2C0.084%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 758530 758530 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C0%2C11%3BMQ%3D42%3BFQ%3D118%3BPV4%3D0.0038%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 758584 758584 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C30%2C29%2C11%3BMQ%3D46%3BFQ%3D192%3BPV4%3D0.062%2C1%2C0.0082%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1017 SAMTools SNP 758626 758626 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C16%2C32%2C17%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 758943 758943 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C50:53 scaffold1017 SAMTools SNP 758945 758945 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C152:62 scaffold1017 SAMTools SNP 758952 758952 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.18%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C250:75 scaffold1017 SAMTools SNP 758987 758987 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C103:31 scaffold1017 SAMTools SNP 759389 759389 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C0.014%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C153:28 scaffold1017 SAMTools SNP 759394 759394 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.023%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1017 SAMTools SNP 759468 759468 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 760934 760934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 761440 761440 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D6.9e-05%2C0.00022%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 762128 762128 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C14%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.19%2C0.31%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1017 SAMTools SNP 762238 762238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1017 SAMTools SNP 763870 763870 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C250:99 scaffold1017 SAMTools SNP 770540 770540 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1017 SAMTools SNP 770567 770567 196 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C230%2C0%2C227:39 scaffold1017 SAMTools SNP 770739 770739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 775987 775987 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 776689 776689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 776695 776695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 779128 779128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 779910 779910 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 781929 781929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 782025 782025 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1017 SAMTools SNP 782481 782481 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold1017 SAMTools SNP 782909 782909 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C132%2C0:99 scaffold1017 SAMTools SNP 789581 789581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1017 SAMTools SNP 790134 790134 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C0%2C8%3BMQ%3D49%3BFQ%3D66%3BPV4%3D0.036%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1017 SAMTools SNP 802589 802589 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 803452 803452 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C28%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 803503 803503 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0038%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 804836 804836 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 806850 806850 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C39%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1017 SAMTools SNP 806886 806886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C42%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1017 SAMTools SNP 809833 809833 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810534 810534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C32%2C17%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.28%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810594 810594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810609 810609 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C2%2C14%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.61%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1017 SAMTools SNP 810630 810630 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C4%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0031%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C244:99 scaffold1017 SAMTools SNP 810814 810814 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.41%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1017 SAMTools SNP 811171 811171 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 811544 811544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C2%2C13%2C136%3BMQ%3D50%3BFQ%3D-154%3BPV4%3D5.6e-06%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C127%2C0:99 scaffold1017 SAMTools SNP 811566 811566 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.013%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1017 SAMTools SNP 811768 811768 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1017 SAMTools SNP 812132 812132 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.2%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C239:68 scaffold1017 SAMTools SNP 812164 812164 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 812949 812949 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C39%2C0:75 scaffold1017 SAMTools SNP 813512 813512 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1017 SAMTools SNP 813836 813836 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1017 SAMTools SNP 814432 814432 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold1017 SAMTools SNP 818298 818298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 819432 819432 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C249:99 scaffold1017 SAMTools SNP 821383 821383 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C17%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1017 SAMTools SNP 821577 821577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 822953 822953 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C146:99 scaffold1017 SAMTools SNP 826816 826816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 826862 826862 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1017 SAMTools SNP 828843 828843 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.011%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C88:57 scaffold1017 SAMTools SNP 846025 846025 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold1017 SAMTools SNP 846415 846415 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold1017 SAMTools SNP 847866 847866 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 850763 850763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 850764 850764 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 850839 850839 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold1017 SAMTools SNP 853119 853119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1017 SAMTools SNP 853575 853575 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1017 SAMTools SNP 856824 856824 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C108%2C1%2C15%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C0.012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1017 SAMTools SNP 863969 863969 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 864002 864002 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 864849 864849 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C9.6e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C206:33 scaffold1017 SAMTools SNP 916352 916352 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 927912 927912 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 927921 927921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 931192 931192 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1017 SAMTools SNP 937146 937146 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1017 SAMTools SNP 937389 937389 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1017 SAMTools SNP 941372 941372 18.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1017 SAMTools SNP 952888 952888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C13%3BMQ%3D47%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1017 SAMTools SNP 954745 954745 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.67%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 958464 958464 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.48%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 959868 959868 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C30%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1017 SAMTools SNP 960289 960289 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 964364 964364 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.36%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1017 SAMTools SNP 965805 965805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 974858 974858 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1017 SAMTools SNP 974897 974897 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1017 SAMTools SNP 976738 976738 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 982040 982040 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1017 SAMTools SNP 1002531 1002531 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 1005545 1005545 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 1021084 1021084 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00023%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C198:49 scaffold1017 SAMTools SNP 1022765 1022765 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1017 SAMTools SNP 1022801 1022801 99.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold1018 SAMTools SNP 1412 1412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 2457 2457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1018 SAMTools SNP 108807 108807 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1018 SAMTools SNP 113626 113626 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C68%2C1%2C50%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C2.8e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1018 SAMTools SNP 114095 114095 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C136:47 scaffold1018 SAMTools SNP 115474 115474 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1018 SAMTools SNP 117080 117080 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1018 SAMTools SNP 117836 117836 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1018 SAMTools SNP 117837 117837 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1018 SAMTools SNP 117904 117904 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 118672 118672 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C6.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 119253 119253 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C19%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.027%2C1.1e-09%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1018 SAMTools SNP 119476 119476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 122028 122028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 122035 122035 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1018 SAMTools SNP 127533 127533 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C87%2C0:99 scaffold1018 SAMTools SNP 127669 127669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C53%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 127879 127879 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 128681 128681 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1018 SAMTools SNP 130286 130286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C96%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 131663 131663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 131723 131723 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1018 SAMTools SNP 132229 132229 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 132344 132344 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C81%2C9%2C108%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.8%2C9.8e-148%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1018 SAMTools SNP 133061 133061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 134505 134505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 134688 134688 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1018 SAMTools SNP 134733 134733 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C35%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1018 SAMTools SNP 134908 134908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 135305 135305 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1018 SAMTools SNP 135324 135324 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 135346 135346 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 135893 135893 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 136102 136102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C51%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.00025%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 136114 136114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C52%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 136333 136333 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1018 SAMTools SNP 136348 136348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C23%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1018 SAMTools SNP 136831 136831 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 136900 136900 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1018 SAMTools SNP 137011 137011 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.29%2C1.2e-32%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1018 SAMTools SNP 137020 137020 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C27%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C3.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1018 SAMTools SNP 137056 137056 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold1018 SAMTools SNP 137158 137158 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1018 SAMTools SNP 137523 137523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1018 SAMTools SNP 137577 137577 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1018 SAMTools SNP 137848 137848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 138178 138178 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 138208 138208 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1018 SAMTools SNP 138246 138246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C25%2C20%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1018 SAMTools SNP 138331 138331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 138497 138497 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1e-06%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 138524 138524 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0064%2C0.014%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1018 SAMTools SNP 138527 138527 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.088%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C175:99 scaffold1018 SAMTools SNP 138707 138707 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00084%2C1.1e-05%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1018 SAMTools SNP 139117 139117 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 139144 139144 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1018 SAMTools SNP 139386 139386 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1018 SAMTools SNP 139795 139795 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 139990 139990 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1018 SAMTools SNP 140220 140220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1018 SAMTools SNP 140223 140223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1018 SAMTools SNP 140479 140479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1018 SAMTools SNP 140510 140510 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold1018 SAMTools SNP 140570 140570 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C10%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1018 SAMTools SNP 140860 140860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C12%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1018 SAMTools SNP 140881 140881 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C15%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1018 SAMTools SNP 141331 141331 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1018 SAMTools SNP 141452 141452 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1018 SAMTools SNP 142436 142436 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1018 SAMTools SNP 143369 143369 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1018 SAMTools SNP 143429 143429 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 143453 143453 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1018 SAMTools SNP 143456 143456 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1018 SAMTools SNP 143477 143477 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1018 SAMTools SNP 143776 143776 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 145083 145083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.029%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1018 SAMTools SNP 145705 145705 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0052%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.055%2C0.13%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1018 SAMTools SNP 145935 145935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1018 SAMTools SNP 146016 146016 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C5%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C196%2C0:99 scaffold1018 SAMTools SNP 146214 146214 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C9%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.075%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1018 SAMTools SNP 146359 146359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C24%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1018 SAMTools SNP 146569 146569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 147305 147305 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.7e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1018 SAMTools SNP 147347 147347 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.33%2C0.14%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1018 SAMTools SNP 150506 150506 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1018 SAMTools SNP 150552 150552 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1018 SAMTools SNP 151765 151765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 151774 151774 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1018 SAMTools SNP 151795 151795 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 153723 153723 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 153777 153777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 155337 155337 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1018 SAMTools SNP 157743 157743 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C214:99 scaffold1018 SAMTools SNP 157836 157836 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1018 SAMTools SNP 157887 157887 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1018 SAMTools SNP 158309 158309 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.021%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C213:99 scaffold1018 SAMTools SNP 158628 158628 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1018 SAMTools SNP 166757 166757 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1018 SAMTools SNP 168796 168796 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold1018 SAMTools SNP 172113 172113 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1018 SAMTools SNP 173336 173336 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1018 SAMTools SNP 173357 173357 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 173401 173401 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 175103 175103 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1018 SAMTools SNP 178757 178757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C6%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1018 SAMTools SNP 180034 180034 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 184379 184379 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold1018 SAMTools SNP 184387 184387 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 191101 191101 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C1%2C21%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C8.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1018 SAMTools SNP 191124 191124 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C37%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C4.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1018 SAMTools SNP 194843 194843 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1949%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D504%2C465%2C435%2C253%3BMQ%3D16%3BFQ%3D57%3BPV4%3D5.9e-06%2C2.4e-07%2C5.4e-07%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C163:87 scaffold1018 SAMTools SNP 219495 219495 39.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1018 SAMTools SNP 221639 221639 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold1018 SAMTools SNP 221767 221767 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1018 SAMTools SNP 222730 222730 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1018 SAMTools SNP 223012 223012 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C85:41 scaffold1018 SAMTools SNP 223374 223374 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C87%2C0:99 scaffold1018 SAMTools SNP 242939 242939 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 242948 242948 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1018 SAMTools SNP 242962 242962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 247696 247696 202 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20%2C234%2C0%2C231:51 scaffold1018 SAMTools SNP 248091 248091 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C6%3BMQ%3D48%3BFQ%3D136%3BPV4%3D0.59%2C0.21%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1018 SAMTools SNP 248106 248106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 251608 251608 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1018 SAMTools SNP 273856 273856 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C39%2C0:75 scaffold1018 SAMTools SNP 277152 277152 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0033%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C137:41 scaffold1018 SAMTools SNP 277290 277290 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1018 SAMTools SNP 279136 279136 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1018 SAMTools SNP 279714 279714 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00074%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1018 SAMTools SNP 279944 279944 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1018 SAMTools SNP 280836 280836 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 280969 280969 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1018 SAMTools SNP 282005 282005 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold1018 SAMTools SNP 283100 283100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283164 283164 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283662 283662 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283793 283793 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.15%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1018 SAMTools SNP 292268 292268 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C152:73 scaffold1018 SAMTools SNP 295453 295453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1018 SAMTools SNP 296761 296761 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1018 SAMTools SNP 302168 302168 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 302180 302180 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 307094 307094 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1018 SAMTools SNP 307833 307833 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1018 SAMTools SNP 310315 310315 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C77%2C0%2C73%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.12%2C6e-16%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 310453 310453 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1018 SAMTools SNP 310602 310602 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 314181 314181 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C94%2C0%2C28%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.36%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C242:99 scaffold1018 SAMTools SNP 314199 314199 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C70%2C0%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C205:94 scaffold1018 SAMTools SNP 318056 318056 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 318074 318074 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C213:70 scaffold1018 SAMTools SNP 318095 318095 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 318609 318609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 320345 320345 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1018 SAMTools SNP 320463 320463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 322472 322472 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 322685 322685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C78%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D8.8e-09%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold1018 SAMTools SNP 322960 322960 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C152%2C14%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324631 324631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C167%2C8%2C151%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324688 324688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324903 324903 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 325332 325332 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C72%2C58%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 325449 325449 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C62%2C6%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 326078 326078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C21%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1018 SAMTools SNP 326501 326501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 327123 327123 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C56%2C0%2C21%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1018 SAMTools SNP 327148 327148 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C0%2C15%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.057%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1018 SAMTools SNP 327600 327600 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.54%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1018 SAMTools SNP 328959 328959 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C79%2C6%2C28%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.00025%2C1%2C1%2C3.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1018 SAMTools SNP 330392 330392 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C38%2C74%3BMQ%3D50%3BFQ%3D224%3BPV4%3D4.1e-07%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1018 SAMTools SNP 330395 330395 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C73%2C1%2C51%3BMQ%3D50%3BFQ%3D215%3BPV4%3D4.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1018 SAMTools SNP 330966 330966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 331339 331339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 335246 335246 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 335258 335258 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 336487 336487 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1018 SAMTools SNP 339724 339724 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 343570 343570 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C94%3BMQ%3D21%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 345811 345811 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D40%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C42%2C0:81 scaffold1018 SAMTools SNP 345819 345819 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C0%3BMQ%3D45%3BFQ%3D99%3BPV4%3D0.0028%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1018 SAMTools SNP 347396 347396 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 365004 365004 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 370652 370652 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1018 SAMTools SNP 370661 370661 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1018 SAMTools SNP 372470 372470 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1018 SAMTools SNP 373009 373009 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1018 SAMTools SNP 373044 373044 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1018 SAMTools SNP 373062 373062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1018 SAMTools SNP 373416 373416 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold1018 SAMTools SNP 373779 373779 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1018 SAMTools SNP 373815 373815 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold1018 SAMTools SNP 373843 373843 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1018 SAMTools SNP 374354 374354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1018 SAMTools SNP 374385 374385 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1018 SAMTools SNP 374433 374433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1018 SAMTools SNP 374787 374787 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.23%2C0.025%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1018 SAMTools SNP 374877 374877 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 375969 375969 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 375993 375993 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 376805 376805 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1018 SAMTools SNP 377612 377612 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1018 SAMTools SNP 378134 378134 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 378620 378620 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 379117 379117 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 379243 379243 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 379249 379249 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1018 SAMTools SNP 380978 380978 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1018 SAMTools SNP 387242 387242 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 387964 387964 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1018 SAMTools SNP 389733 389733 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1018 SAMTools SNP 406150 406150 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1018 SAMTools SNP 430404 430404 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1018 SAMTools SNP 449970 449970 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1018 SAMTools SNP 451167 451167 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1018 SAMTools SNP 451257 451257 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1018 SAMTools SNP 506710 506710 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1018 SAMTools SNP 524988 524988 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 525001 525001 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 573552 573552 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1018 SAMTools SNP 574062 574062 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D5.38%3BPV4%3D1%2C5.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C35:32 scaffold1018 SAMTools SNP 574815 574815 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1018 SAMTools SNP 580396 580396 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold1018 SAMTools SNP 583137 583137 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 583140 583140 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1018 SAMTools SNP 586932 586932 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1018 SAMTools SNP 587002 587002 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1018 SAMTools SNP 587035 587035 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.11%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold1018 SAMTools SNP 587051 587051 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1018 SAMTools SNP 587060 587060 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1018 SAMTools SNP 587250 587250 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1018 SAMTools SNP 595784 595784 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1018 SAMTools SNP 595850 595850 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.18%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1018 SAMTools SNP 595965 595965 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.49%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1018 SAMTools SNP 596329 596329 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 596653 596653 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold1018 SAMTools SNP 598258 598258 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.003%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C129:84 scaffold1018 SAMTools SNP 598270 598270 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1018 SAMTools SNP 598483 598483 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold1018 SAMTools SNP 598492 598492 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1018 SAMTools SNP 598696 598696 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1018 SAMTools SNP 600349 600349 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1018 SAMTools SNP 600352 600352 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.34%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1018 SAMTools SNP 600852 600852 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1018 SAMTools SNP 600858 600858 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold102 SAMTools SNP 5191 5191 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D788%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold102 SAMTools SNP 11146 11146 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C114%2C0:99 scaffold102 SAMTools SNP 12103 12103 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C255%2C0:99 scaffold102 SAMTools SNP 17818 17818 222 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0%2C238%2C58%2C226:99 scaffold102 SAMTools SNP 20559 20559 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 54442 54442 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 55790 55790 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 57626 57626 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 62329 62329 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 66360 66360 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 68945 68945 26.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold102 SAMTools SNP 70916 70916 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 70924 70924 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 73252 73252 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C84%2C0:99 scaffold102 SAMTools SNP 77333 77333 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C46%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C199%2C0:99 scaffold102 SAMTools SNP 80050 80050 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C137%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold102 SAMTools SNP 80202 80202 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C18%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C1.5e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold102 SAMTools SNP 80976 80976 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C8%2C49%2C13%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C3.8e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold102 SAMTools SNP 81674 81674 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold102 SAMTools SNP 82960 82960 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 83993 83993 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C238:65 scaffold102 SAMTools SNP 90919 90919 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold102 SAMTools SNP 91672 91672 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold102 SAMTools SNP 91731 91731 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 92185 92185 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C243:99 scaffold102 SAMTools SNP 92201 92201 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold102 SAMTools SNP 92285 92285 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.56%2C4.4e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold102 SAMTools SNP 93775 93775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 93803 93803 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 94156 94156 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 94221 94221 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C134:99 scaffold102 SAMTools SNP 94412 94412 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.3%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold102 SAMTools SNP 94484 94484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.16%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold102 SAMTools SNP 94919 94919 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 96529 96529 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 96536 96536 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 96840 96840 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 97012 97012 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.2%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold102 SAMTools SNP 97034 97034 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 97041 97041 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold102 SAMTools SNP 97712 97712 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 97729 97729 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 97810 97810 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 97833 97833 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 98297 98297 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 98514 98514 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold102 SAMTools SNP 99143 99143 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold102 SAMTools SNP 99255 99255 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 99263 99263 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 99281 99281 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold102 SAMTools SNP 99665 99665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 100883 100883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.078%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 101344 101344 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C12%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.00047%2C0.41%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 101362 101362 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C2%3BMQ%3D47%3BFQ%3D152%3BPV4%3D0.38%2C5e-05%2C0.3%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold102 SAMTools SNP 101564 101564 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 101611 101611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 103855 103855 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C3%3BMQ%3D47%3BFQ%3D23%3BPV4%3D0.26%2C9.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C225:53 scaffold102 SAMTools SNP 103889 103889 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold102 SAMTools SNP 103929 103929 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold102 SAMTools SNP 105072 105072 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold102 SAMTools SNP 105993 105993 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 106984 106984 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold102 SAMTools SNP 108250 108250 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold102 SAMTools SNP 108637 108637 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C202:99 scaffold102 SAMTools SNP 109739 109739 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C211:99 scaffold102 SAMTools SNP 110519 110519 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold102 SAMTools SNP 110650 110650 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold102 SAMTools SNP 110724 110724 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 110726 110726 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 111369 111369 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.45%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold102 SAMTools SNP 111580 111580 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 113763 113763 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 115806 115806 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold102 SAMTools SNP 116420 116420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 116466 116466 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C6.5e-09%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold102 SAMTools SNP 116520 116520 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold102 SAMTools SNP 117239 117239 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold102 SAMTools SNP 117754 117754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 117760 117760 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.28%2C4.5e-07%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold102 SAMTools SNP 118771 118771 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 121903 121903 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C20%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0077%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C156:99 scaffold102 SAMTools SNP 122215 122215 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C13%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.26%2C5.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C85:88 scaffold102 SAMTools SNP 122828 122828 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 129340 129340 64.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold102 SAMTools SNP 137729 137729 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 137749 137749 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 137968 137968 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 179972 179972 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 263101 263101 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 263524 263524 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C160:48 scaffold102 SAMTools SNP 267311 267311 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 295687 295687 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold102 SAMTools SNP 296655 296655 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold102 SAMTools SNP 296724 296724 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 299908 299908 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 300513 300513 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 300622 300622 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 331696 331696 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 370179 370179 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.018%2C5.2e-06%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C158:64 scaffold102 SAMTools SNP 375253 375253 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 378334 378334 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold102 SAMTools SNP 378364 378364 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 380859 380859 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold102 SAMTools SNP 387163 387163 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold102 SAMTools SNP 387470 387470 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold102 SAMTools SNP 387790 387790 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold102 SAMTools SNP 387798 387798 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 399244 399244 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold102 SAMTools SNP 433563 433563 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold102 SAMTools SNP 446605 446605 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 458448 458448 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold102 SAMTools SNP 458880 458880 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 460466 460466 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.07%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C73:52 scaffold102 SAMTools SNP 462488 462488 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 464003 464003 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 464053 464053 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 464566 464566 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold102 SAMTools SNP 464578 464578 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold102 SAMTools SNP 497768 497768 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 497769 497769 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 498347 498347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold102 SAMTools SNP 507170 507170 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507179 507179 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C47%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.46%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507545 507545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D630%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D326%2C103%2C176%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507582 507582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C44%2C35%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507661 507661 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C2%2C34%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold102 SAMTools SNP 508184 508184 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0021%2C0.2%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold102 SAMTools SNP 508539 508539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.17%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 508667 508667 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C24%2C6%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold102 SAMTools SNP 508706 508706 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C18%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 510785 510785 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.057%2C0.32%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold102 SAMTools SNP 510854 510854 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C62%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 511804 511804 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 513928 513928 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C52%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold102 SAMTools SNP 514429 514429 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C7%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.7%2C0.0082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold102 SAMTools SNP 514469 514469 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.018%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 514551 514551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C34%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold102 SAMTools SNP 514733 514733 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C9%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.66%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold102 SAMTools SNP 514817 514817 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold102 SAMTools SNP 515475 515475 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold102 SAMTools SNP 515583 515583 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C48%2C0:93 scaffold102 SAMTools SNP 516897 516897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C15%2C12%3BMQ%3D42%3BFQ%3D200%3BPV4%3D0.0065%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold102 SAMTools SNP 516927 516927 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C15%2C22%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 518917 518917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C33%3BMQ%3D43%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold102 SAMTools SNP 518961 518961 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C75%2C1%3BMQ%3D46%3BFQ%3D225%3BPV4%3D3.8e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 519893 519893 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold102 SAMTools SNP 521428 521428 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C14%2C12%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold102 SAMTools SNP 528057 528057 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42.9%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C88:73 scaffold102 SAMTools SNP 528861 528861 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C4%2C6%3BMQ%3D45%3BFQ%3D49%3BPV4%3D0.0009%2C3.7e-08%2C0.47%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C239:79 scaffold102 SAMTools SNP 536278 536278 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C49%3BMQ%3D47%3BFQ%3D216%3BPV4%3D0.093%2C1%2C0.16%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold102 SAMTools SNP 536302 536302 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold102 SAMTools SNP 536553 536553 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C15%2C0%3BMQ%3D49%3BFQ%3D200%3BPV4%3D0.23%2C0.15%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold102 SAMTools SNP 536622 536622 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C3%2C4%3BMQ%3D49%3BFQ%3D122%3BPV4%3D0.005%2C1%2C0.014%2C1.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold102 SAMTools SNP 536676 536676 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C99%2C9%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold102 SAMTools SNP 536680 536680 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C70%2C1%2C49%3BMQ%3D50%3BFQ%3D209%3BPV4%3D2.1e-07%2C0.4%2C0.067%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold102 SAMTools SNP 537302 537302 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C162%2C5%2C61%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 538034 538034 49.1 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C20%2C2%2C73%2C0%2C70:33 scaffold102 SAMTools SNP 538165 538165 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C25%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold102 SAMTools SNP 542995 542995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 543055 543055 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0031%2C0.24%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold102 SAMTools SNP 543177 543177 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.1e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C244:44 scaffold102 SAMTools SNP 550560 550560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C67%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 555638 555638 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C49%2C0%2C11%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.34%2C0.058%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold102 SAMTools SNP 558111 558111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold102 SAMTools SNP 558180 558180 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0086%2C3.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold102 SAMTools SNP 558228 558228 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00012%2C4.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold102 SAMTools SNP 558243 558243 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0034%2C5.5e-13%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C242:83 scaffold102 SAMTools SNP 558291 558291 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 559332 559332 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 559350 559350 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 559521 559521 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.051%2C1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C216:65 scaffold102 SAMTools SNP 559576 559576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 560127 560127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 560139 560139 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 561556 561556 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C31%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0002%2C5.5e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold102 SAMTools SNP 561563 561563 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.00018%2C6.2e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold102 SAMTools SNP 561596 561596 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C48%2C0%2C15%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.33%2C7.1e-09%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold102 SAMTools SNP 562467 562467 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 562470 562470 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 562890 562890 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.14%2C5.5e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold102 SAMTools SNP 562938 562938 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold102 SAMTools SNP 563296 563296 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.037%2C0.065%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold102 SAMTools SNP 563477 563477 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C119:99 scaffold102 SAMTools SNP 575125 575125 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C157:99 scaffold102 SAMTools SNP 575134 575134 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C241:99 scaffold102 SAMTools SNP 575399 575399 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.16%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C167:99 scaffold102 SAMTools SNP 575645 575645 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 575664 575664 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold102 SAMTools SNP 575720 575720 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0047%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold102 SAMTools SNP 576407 576407 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 576702 576702 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 577679 577679 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold102 SAMTools SNP 577987 577987 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 579545 579545 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold102 SAMTools SNP 579602 579602 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold102 SAMTools SNP 579642 579642 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C127:99 scaffold102 SAMTools SNP 579644 579644 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.003%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C176:99 scaffold102 SAMTools SNP 580268 580268 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold102 SAMTools SNP 580631 580631 226 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold102 SAMTools SNP 581304 581304 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold102 SAMTools SNP 593519 593519 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold102 SAMTools SNP 594229 594229 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 594257 594257 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 603985 603985 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 603989 603989 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 604454 604454 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 604459 604459 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 640437 640437 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C156:49 scaffold102 SAMTools SNP 648552 648552 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 648581 648581 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 658817 658817 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 658829 658829 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 659326 659326 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold102 SAMTools SNP 659462 659462 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 660959 660959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 660986 660986 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 663991 663991 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold102 SAMTools SNP 665909 665909 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 667064 667064 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold102 SAMTools SNP 667472 667472 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold102 SAMTools SNP 669745 669745 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold102 SAMTools SNP 669895 669895 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 669906 669906 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 678861 678861 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C42%2C0:81 scaffold102 SAMTools SNP 753858 753858 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 762443 762443 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold102 SAMTools SNP 789041 789041 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 806349 806349 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 806385 806385 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold102 SAMTools SNP 806464 806464 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold102 SAMTools SNP 806697 806697 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 806730 806730 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 806733 806733 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 807531 807531 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 807868 807868 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold102 SAMTools SNP 809168 809168 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 810151 810151 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 810157 810157 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 810881 810881 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold102 SAMTools SNP 810926 810926 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold102 SAMTools SNP 811363 811363 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold102 SAMTools SNP 811524 811524 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C5.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C254:78 scaffold102 SAMTools SNP 811932 811932 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 811934 811934 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 812067 812067 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold102 SAMTools SNP 812091 812091 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 813265 813265 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C77:78 scaffold102 SAMTools SNP 813345 813345 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.34%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold102 SAMTools SNP 820132 820132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 849691 849691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D652%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 849728 849728 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C341%2C57%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-08%2C2.9e-259%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 850333 850333 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D231%2C42%2C147%2C44%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.04%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold102 SAMTools SNP 850396 850396 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C51%2C0:99 scaffold102 SAMTools SNP 850629 850629 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold102 SAMTools SNP 851698 851698 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold102 SAMTools SNP 852376 852376 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold102 SAMTools SNP 853732 853732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 854079 854079 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 855792 855792 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold102 SAMTools SNP 856025 856025 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold102 SAMTools SNP 857410 857410 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold102 SAMTools SNP 857983 857983 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 858478 858478 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 858487 858487 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 867807 867807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 870888 870888 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-221%3BPV4%3D1%2C1%2C1%2C5.5e-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C194%2C0:99 scaffold102 SAMTools SNP 870912 870912 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C93%2C0%3BMQ%3D50%3BFQ%3D-260%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C233%2C0:99 scaffold102 SAMTools SNP 871845 871845 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C93%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 872998 872998 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C192%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 887715 887715 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 890748 890748 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 897230 897230 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 897233 897233 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 898895 898895 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold102 SAMTools SNP 898907 898907 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 901470 901470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 911261 911261 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 911569 911569 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 919843 919843 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold102 SAMTools SNP 920184 920184 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold102 SAMTools SNP 920187 920187 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold102 SAMTools SNP 920199 920199 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold102 SAMTools SNP 920551 920551 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 922249 922249 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold102 SAMTools SNP 922378 922378 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 922426 922426 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold102 SAMTools SNP 923667 923667 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 923695 923695 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 923928 923928 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold102 SAMTools SNP 923933 923933 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold102 SAMTools SNP 923949 923949 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold102 SAMTools SNP 924571 924571 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 924688 924688 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold102 SAMTools SNP 925275 925275 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 925317 925317 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 925318 925318 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.47%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold102 SAMTools SNP 925729 925729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold102 SAMTools SNP 926270 926270 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 930230 930230 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6.8e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold102 SAMTools SNP 930644 930644 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold102 SAMTools SNP 930659 930659 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 930671 930671 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C48%2C0:93 scaffold102 SAMTools SNP 931821 931821 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 931891 931891 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold102 SAMTools SNP 931942 931942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold102 SAMTools SNP 933078 933078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C24%2C58%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C4.1e-69%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 933252 933252 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C22%2C24%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.83%2C6.5e-94%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold102 SAMTools SNP 933261 933261 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C4%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.74%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 935294 935294 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.058%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold102 SAMTools SNP 935316 935316 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold102 SAMTools SNP 935397 935397 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold102 SAMTools SNP 935691 935691 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold102 SAMTools SNP 940211 940211 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 940632 940632 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold102 SAMTools SNP 954079 954079 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold102 SAMTools SNP 971923 971923 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold102 SAMTools SNP 972869 972869 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 972881 972881 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 972890 972890 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 973209 973209 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold102 SAMTools SNP 973329 973329 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold102 SAMTools SNP 973664 973664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 973966 973966 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C36%2C0:69 scaffold102 SAMTools SNP 977037 977037 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 977063 977063 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 977875 977875 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 978843 978843 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 979320 979320 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold102 SAMTools SNP 981346 981346 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 985002 985002 17.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold102 SAMTools SNP 985170 985170 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 985256 985256 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 985263 985263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 987864 987864 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold102 SAMTools SNP 987916 987916 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 988514 988514 22.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold102 SAMTools SNP 990377 990377 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 990402 990402 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 990692 990692 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 991188 991188 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1005959 1005959 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1005963 1005963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1006030 1006030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C7%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1014079 1014079 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C0%2C28%3BMQ%3D50%3BFQ%3D208%3BPV4%3D3.5e-10%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold102 SAMTools SNP 1017714 1017714 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C7%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D3.5e-06%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold102 SAMTools SNP 1017723 1017723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold102 SAMTools SNP 1017765 1017765 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold102 SAMTools SNP 1017828 1017828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1017918 1017918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 1017952 1017952 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C4%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.71%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold102 SAMTools SNP 1017975 1017975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1018442 1018442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1018466 1018466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1018958 1018958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1018988 1018988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C40%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019009 1019009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019420 1019420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C11%2C26%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019462 1019462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C24%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold102 SAMTools SNP 1019973 1019973 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C28%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1020021 1020021 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C30%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1020078 1020078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C50%2C58%3BMQ%3D50%3BFQ%3D-270%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C243%2C0:99 scaffold102 SAMTools SNP 1021072 1021072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C49%2C46%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D0.24%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold102 SAMTools SNP 1021103 1021103 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold102 SAMTools SNP 1021523 1021523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C60%2C8%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C3.2e-06%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1021572 1021572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C15%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.9e-08%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1022760 1022760 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C255%2C0:99 scaffold102 SAMTools SNP 1036219 1036219 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1039300 1039300 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.096%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold102 SAMTools SNP 1039483 1039483 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C176:91 scaffold102 SAMTools SNP 1040242 1040242 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold102 SAMTools SNP 1040244 1040244 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold102 SAMTools SNP 1042681 1042681 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold102 SAMTools SNP 1044082 1044082 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C109:74 scaffold102 SAMTools SNP 1044111 1044111 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1044453 1044453 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 1044481 1044481 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1045119 1045119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C7%3BMQ%3D40%3BFQ%3D13.2%3BPV4%3D0.27%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold102 SAMTools SNP 1046062 1046062 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C13%2C0%3BMQ%3D30%3BFQ%3D51%3BPV4%3D0.096%2C1%2C0.12%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C197:81 scaffold102 SAMTools SNP 1046278 1046278 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C9%2C10%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold102 SAMTools SNP 1046295 1046295 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.47%2C9.1e-26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold102 SAMTools SNP 1046838 1046838 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D35%3BFQ%3D3.48%3BPV4%3D1%2C0.0022%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C32:28 scaffold102 SAMTools SNP 1046949 1046949 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold102 SAMTools SNP 1049621 1049621 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1053055 1053055 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C0.11%2C0.25%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C77:78 scaffold102 SAMTools SNP 1053449 1053449 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C4%3BMQ%3D45%3BFQ%3D20.1%3BPV4%3D0.54%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold102 SAMTools SNP 1053520 1053520 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C11%3BMQ%3D41%3BFQ%3D92%3BPV4%3D0.056%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C119:99 scaffold102 SAMTools SNP 1062703 1062703 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold102 SAMTools SNP 1062753 1062753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1067370 1067370 12.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold102 SAMTools SNP 1069120 1069120 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.025%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C43:43 scaffold102 SAMTools SNP 1069146 1069146 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.00022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C141:68 scaffold102 SAMTools SNP 1069462 1069462 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C61%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C205%2C0:99 scaffold102 SAMTools SNP 1069636 1069636 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold102 SAMTools SNP 1070198 1070198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C41%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1070264 1070264 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C21%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1071859 1071859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C7%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1071919 1071919 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.18%2C0.075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold102 SAMTools SNP 1073125 1073125 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold102 SAMTools SNP 1075149 1075149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 1075218 1075218 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1075875 1075875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C9%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.057%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1076140 1076140 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C2%2C23%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1078793 1078793 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1078795 1078795 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1082576 1082576 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.18%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C133:75 scaffold102 SAMTools SNP 1083180 1083180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold102 SAMTools SNP 1083479 1083479 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold102 SAMTools SNP 1084751 1084751 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C190%2C0:99 scaffold102 SAMTools SNP 1084906 1084906 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C6.4e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C71:74 scaffold102 SAMTools SNP 1085173 1085173 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.00096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold102 SAMTools SNP 1085176 1085176 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.34%2C1%2C1%2C4.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold102 SAMTools SNP 1087115 1087115 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C6.2e-15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C150:44 scaffold102 SAMTools SNP 1087501 1087501 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold102 SAMTools SNP 1087970 1087970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2142%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C936%2C805%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1088021 1088021 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5797%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C78%2C456%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0033%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1088716 1088716 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C120%2C1%2C44%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C3.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold102 SAMTools SNP 1095313 1095313 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C7.4e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C196:93 scaffold102 SAMTools SNP 1096009 1096009 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold102 SAMTools SNP 1106169 1106169 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1108776 1108776 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C50%2C15%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C6e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1108785 1108785 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1110306 1110306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold102 SAMTools SNP 1110324 1110324 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C4%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0073%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold102 SAMTools SNP 1110336 1110336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold102 SAMTools SNP 1111443 1111443 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.15%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C3%2C0:6 scaffold102 SAMTools SNP 1113116 1113116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1113389 1113389 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C243:59 scaffold102 SAMTools SNP 1117631 1117631 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C13%2C20%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C6.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold102 SAMTools SNP 1118095 1118095 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.48%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold102 SAMTools SNP 1121188 1121188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 1125228 1125228 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1125749 1125749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1125837 1125837 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C19%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C217%2C0:99 scaffold102 SAMTools SNP 1130227 1130227 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold102 SAMTools SNP 1130540 1130540 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1132439 1132439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C2%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold102 SAMTools SNP 1132462 1132462 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C9%2C61%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.027%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold102 SAMTools SNP 1133203 1133203 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold102 SAMTools SNP 1133303 1133303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C24%2C42%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.01%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1136257 1136257 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C15%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 1138096 1138096 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C255%2C0:99 scaffold102 SAMTools SNP 1138630 1138630 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C246:99 scaffold102 SAMTools SNP 1138659 1138659 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold102 SAMTools SNP 1138681 1138681 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1138813 1138813 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 1142479 1142479 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1142500 1142500 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1142988 1142988 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1142989 1142989 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1143013 1143013 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1143091 1143091 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C12%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold102 SAMTools SNP 1157431 1157431 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold102 SAMTools SNP 1159050 1159050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C89%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.43%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1159406 1159406 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold102 SAMTools SNP 1159930 1159930 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1160000 1160000 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold102 SAMTools SNP 1160010 1160010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C13%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold102 SAMTools SNP 1164036 1164036 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold102 SAMTools SNP 1164068 1164068 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D290%2C0%2C146%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold102 SAMTools SNP 1165460 1165460 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C21%2C67%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold102 SAMTools SNP 1165849 1165849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C180%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1165857 1165857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1166035 1166035 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold102 SAMTools SNP 1166044 1166044 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C21:24 scaffold102 SAMTools SNP 1166995 1166995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D709%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C442%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1167197 1167197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D713%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C700%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1167248 1167248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C699%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1168453 1168453 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1171060 1171060 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold102 SAMTools SNP 1171090 1171090 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 1171108 1171108 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1171934 1171934 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1172188 1172188 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1172230 1172230 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1173008 1173008 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1173140 1173140 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold102 SAMTools SNP 1173484 1173484 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold102 SAMTools SNP 1173809 1173809 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1174252 1174252 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.037%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold102 SAMTools SNP 1174673 1174673 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1174702 1174702 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1174926 1174926 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1174941 1174941 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1174965 1174965 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1175441 1175441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1175707 1175707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1178878 1178878 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C87%2C0:99 scaffold102 SAMTools SNP 1178901 1178901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 1180800 1180800 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold102 SAMTools SNP 1182600 1182600 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 1182654 1182654 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold102 SAMTools SNP 1191599 1191599 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold102 SAMTools SNP 1192426 1192426 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C63:66 scaffold102 SAMTools SNP 1192474 1192474 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1192575 1192575 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold102 SAMTools SNP 1195072 1195072 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold102 SAMTools SNP 1195360 1195360 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 1195443 1195443 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.1e-29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C215:46 scaffold102 SAMTools SNP 1195519 1195519 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C10%2C14%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.31%2C1.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold102 SAMTools SNP 1195674 1195674 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold102 SAMTools SNP 1241259 1241259 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C16%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.5%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold102 SAMTools SNP 1242457 1242457 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold102 SAMTools SNP 1243629 1243629 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1243690 1243690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.01%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1244640 1244640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1244685 1244685 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C157:99 scaffold102 SAMTools SNP 1244707 1244707 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.29%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C228:99 scaffold102 SAMTools SNP 1244721 1244721 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.52%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold102 SAMTools SNP 1245238 1245238 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.12%2C0.021%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C230:36 scaffold102 SAMTools SNP 1247012 1247012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1247746 1247746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold102 SAMTools SNP 1256333 1256333 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1256839 1256839 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold102 SAMTools SNP 1257053 1257053 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold102 SAMTools SNP 1257174 1257174 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C39%2C0:75 scaffold102 SAMTools SNP 1257414 1257414 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold102 SAMTools SNP 1257648 1257648 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C39%2C0:65 scaffold102 SAMTools SNP 1260561 1260561 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C175%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1260930 1260930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1260984 1260984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold102 SAMTools SNP 1261600 1261600 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.034%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C208:91 scaffold102 SAMTools SNP 1261669 1261669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C43%2C39%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1261787 1261787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1263010 1263010 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C54%2C1%2C57%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1.6e-16%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold102 SAMTools SNP 1266982 1266982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1271866 1271866 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1271917 1271917 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 1282063 1282063 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C51%2C0:89 scaffold102 SAMTools SNP 1283264 1283264 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold102 SAMTools SNP 1283298 1283298 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.03%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold102 SAMTools SNP 1283299 1283299 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.028%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold102 SAMTools SNP 1283308 1283308 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold102 SAMTools SNP 1283338 1283338 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold102 SAMTools SNP 1283823 1283823 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1284791 1284791 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0091%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold102 SAMTools SNP 1284833 1284833 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold102 SAMTools SNP 1286435 1286435 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1288251 1288251 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold102 SAMTools SNP 1288456 1288456 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold102 SAMTools SNP 1288977 1288977 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C175:99 scaffold102 SAMTools SNP 1289628 1289628 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold102 SAMTools SNP 1291678 1291678 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.02%2C1.2e-23%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C214:99 scaffold102 SAMTools SNP 1291771 1291771 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C11%2C12%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.19%2C3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold102 SAMTools SNP 1292120 1292120 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold102 SAMTools SNP 1292936 1292936 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C161:99 scaffold102 SAMTools SNP 1295078 1295078 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 1298514 1298514 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1298543 1298543 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold102 SAMTools SNP 1298750 1298750 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold102 SAMTools SNP 1298897 1298897 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold102 SAMTools SNP 1304643 1304643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1304696 1304696 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 1304789 1304789 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C56%2C64%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C7.6e-91%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1304826 1304826 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C9%2C9%2C11%3BMQ%3D50%3BFQ%3D154%3BPV4%3D2.3e-06%2C1%2C1%2C2.8e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold102 SAMTools SNP 1305041 1305041 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C205%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1306212 1306212 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1306227 1306227 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1314195 1314195 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold102 SAMTools SNP 1317145 1317145 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1317547 1317547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold102 SAMTools SNP 1317621 1317621 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold102 SAMTools SNP 1346292 1346292 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold102 SAMTools SNP 1347462 1347462 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1348251 1348251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C11%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold102 SAMTools SNP 1348260 1348260 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold102 SAMTools SNP 1349870 1349870 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold102 SAMTools SNP 1350046 1350046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1350062 1350062 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1350586 1350586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1351505 1351505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold102 SAMTools SNP 1351656 1351656 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1361127 1361127 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1381380 1381380 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1381395 1381395 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1388627 1388627 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1390769 1390769 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.5%2C0.031%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C246:47 scaffold102 SAMTools SNP 1390904 1390904 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1391279 1391279 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold102 SAMTools SNP 1402272 1402272 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 1454622 1454622 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold102 SAMTools SNP 1456051 1456051 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 1456082 1456082 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1469523 1469523 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold102 SAMTools SNP 1475323 1475323 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1475334 1475334 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold102 SAMTools SNP 1476323 1476323 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4038%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1236%2C839%2C172%2C785%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-107%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1478949 1478949 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6346%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1316%2C1356%2C2544%2C1083%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-63%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479018 1479018 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6297%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3193%2C1082%2C1509%2C510%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.98%2C0%2C1%2C2.2e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479027 1479027 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5743%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2981%2C1131%2C712%2C61%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.9e-37%2C1%2C1%2C1.7e-156;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold102 SAMTools SNP 1479063 1479063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4012%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D954%2C2097%2C83%2C875%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479090 1479090 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5434%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3549%2C86%2C1771%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479301 1479301 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2050%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1381%2C0%2C668%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold102 SAMTools SNP 1480609 1480609 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C89%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C148:99 scaffold102 SAMTools SNP 1480610 1480610 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C242:99 scaffold102 SAMTools SNP 1480653 1480653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1489264 1489264 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C25%2C1%2C26%3BMQ%3D50%3BFQ%3D57%3BPV4%3D4.8e-14%2C1.2e-12%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold102 SAMTools SNP 1489337 1489337 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C27%2C40%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1490038 1490038 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C27%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold102 SAMTools SNP 1490056 1490056 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C19%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold102 SAMTools SNP 1490511 1490511 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C7%2C17%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold102 SAMTools SNP 1490574 1490574 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C56%2C27%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.059%2C0.06%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold102 SAMTools SNP 1491051 1491051 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D519%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C62%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold102 SAMTools SNP 1491141 1491141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold102 SAMTools SNP 1491162 1491162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C256%2C41%2C138%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1491600 1491600 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C55%2C72%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1492971 1492971 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C86%2C0%2C72%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.00072%2C1%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold102 SAMTools SNP 1496771 1496771 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 1496772 1496772 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 1496842 1496842 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 1496853 1496853 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1501537 1501537 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1505005 1505005 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1511596 1511596 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C54%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0049%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C78:81 scaffold102 SAMTools SNP 1511614 1511614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C50%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.042%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold102 SAMTools SNP 1511653 1511653 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.64%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold102 SAMTools SNP 1512057 1512057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.38%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold102 SAMTools SNP 1513043 1513043 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1513055 1513055 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1513299 1513299 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1514424 1514424 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold102 SAMTools SNP 1516405 1516405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 1516459 1516459 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold102 SAMTools SNP 1516483 1516483 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C109:80 scaffold102 SAMTools SNP 1516755 1516755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 1516781 1516781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.59%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold102 SAMTools SNP 1518680 1518680 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C10%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1.3e-24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold102 SAMTools SNP 1518710 1518710 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold102 SAMTools SNP 1519925 1519925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.21%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1520108 1520108 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C5%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.3%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold102 SAMTools SNP 1521754 1521754 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1521864 1521864 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold102 SAMTools SNP 1521883 1521883 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1522632 1522632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold102 SAMTools SNP 1523133 1523133 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C93:96 scaffold102 SAMTools SNP 1523157 1523157 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold102 SAMTools SNP 1525348 1525348 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C24%2C0:45 scaffold102 SAMTools SNP 1526025 1526025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1526056 1526056 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.48%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold102 SAMTools SNP 1526914 1526914 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1529047 1529047 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold102 SAMTools SNP 1529065 1529065 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.27%2C5.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C109:66 scaffold102 SAMTools SNP 1529202 1529202 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1529205 1529205 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 1529238 1529238 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1533266 1533266 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C19%2C13%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.38%2C1.2e-30%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C144:99 scaffold102 SAMTools SNP 1533638 1533638 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C1.2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C149%2C0:99 scaffold102 SAMTools SNP 1533818 1533818 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C21%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold102 SAMTools SNP 1534195 1534195 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C6%2C37%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.31%2C1.9e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold102 SAMTools SNP 1534400 1534400 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.14%2C5.5e-08%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C104:75 scaffold102 SAMTools SNP 1535639 1535639 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold102 SAMTools SNP 1536550 1536550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1537087 1537087 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold102 SAMTools SNP 1537180 1537180 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold102 SAMTools SNP 1537186 1537186 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D0.1%2C0.1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold102 SAMTools SNP 1537192 1537192 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C245:91 scaffold102 SAMTools SNP 1537372 1537372 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.18%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold102 SAMTools SNP 1537606 1537606 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold102 SAMTools SNP 1537719 1537719 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C14%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold102 SAMTools SNP 1539275 1539275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C28%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold102 SAMTools SNP 1539474 1539474 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold102 SAMTools SNP 1539513 1539513 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold102 SAMTools SNP 1539627 1539627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1540027 1540027 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold102 SAMTools SNP 1540254 1540254 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540334 1540334 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.5%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540355 1540355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540520 1540520 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540615 1540615 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.018%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1540960 1540960 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1541280 1541280 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold102 SAMTools SNP 1541640 1541640 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C27%2C0:51 scaffold102 SAMTools SNP 1568237 1568237 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C223:99 scaffold102 SAMTools SNP 1568264 1568264 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C40:43 scaffold102 SAMTools SNP 1568338 1568338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1568354 1568354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold102 SAMTools SNP 1568884 1568884 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold102 SAMTools SNP 1569592 1569592 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold102 SAMTools SNP 1573063 1573063 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold102 SAMTools SNP 1573103 1573103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold102 SAMTools SNP 1578008 1578008 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.44%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold102 SAMTools SNP 1580651 1580651 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold102 SAMTools SNP 1593352 1593352 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1593358 1593358 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1596313 1596313 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1628%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C373%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold102 SAMTools SNP 1596447 1596447 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1489%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C69%2C1378%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.094%2C4.6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C255%2C0:99 scaffold102 SAMTools SNP 1596711 1596711 39.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.25%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C15:18 scaffold102 SAMTools SNP 1597111 1597111 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1192%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1191%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C255%2C0:99 scaffold102 SAMTools SNP 1597159 1597159 41.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D766%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold102 SAMTools SNP 1597723 1597723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D783%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C228%2C335%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597762 1597762 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D726%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C150%2C77%2C315%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597763 1597763 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D730%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C315%2C178%2C155%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-20%2C3.8e-11%2C1%2C1.2e-56;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597769 1597769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C309%2C6%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C5.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598332 1598332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C76%2C116%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-17%2C1%2C1%2C1.7e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598677 1598677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D213%2C26%2C301%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.18%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598698 1598698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C663%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1603025 1603025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 1605216 1605216 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold102 SAMTools SNP 1605217 1605217 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold102 SAMTools SNP 1605225 1605225 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C11%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold102 SAMTools SNP 1605267 1605267 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1.6e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold102 SAMTools SNP 1605529 1605529 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold102 SAMTools SNP 1606132 1606132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C27%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold102 SAMTools SNP 1606142 1606142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C16%2C27%3BMQ%3D50%3BFQ%3D216%3BPV4%3D9.8e-10%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold102 SAMTools SNP 1606143 1606143 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C33%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D9.8e-10%2C0.082%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold102 SAMTools SNP 1606173 1606173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C44%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1606393 1606393 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C63%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold102 SAMTools SNP 1606428 1606428 224 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold102 SAMTools SNP 1606925 1606925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold102 SAMTools SNP 1606962 1606962 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C225:99 scaffold102 SAMTools SNP 1607279 1607279 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.66%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold102 SAMTools SNP 1608301 1608301 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C41%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-09%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1608548 1608548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C11%2C35%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.67%2C5.6e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold102 SAMTools SNP 1608554 1608554 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold102 SAMTools SNP 1608677 1608677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1608843 1608843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1608935 1608935 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C73%2C3%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1609038 1609038 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C66%2C0:99 scaffold102 SAMTools SNP 1609050 1609050 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C51%2C0:99 scaffold102 SAMTools SNP 1617067 1617067 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold102 SAMTools SNP 1619069 1619069 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C2%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619302 1619302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C49%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619317 1619317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619492 1619492 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619531 1619531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1620332 1620332 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C56%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1620398 1620398 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C7%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.17%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold102 SAMTools SNP 1621736 1621736 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C0.26%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1622629 1622629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C16%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1622650 1622650 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1622654 1622654 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0015%2C0.013%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold102 SAMTools SNP 1623133 1623133 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.09%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold102 SAMTools SNP 1623533 1623533 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold102 SAMTools SNP 1623542 1623542 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1623653 1623653 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold102 SAMTools SNP 1628370 1628370 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.17%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold102 SAMTools SNP 1628373 1628373 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.58%2C0.089%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold102 SAMTools SNP 1641326 1641326 52.3 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C75%2C60%2C93%2C0%2C78:27 scaffold102 SAMTools SNP 1641368 1641368 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C36%2C0:69 scaffold102 SAMTools SNP 1642069 1642069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1647673 1647673 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold102 SAMTools SNP 1648035 1648035 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.059%2C8.8e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold102 SAMTools SNP 1648060 1648060 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold102 SAMTools SNP 1648148 1648148 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C0%2C18%3BMQ%3D50%3BFQ%3D151%3BPV4%3D9.7e-08%2C7.7e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold102 SAMTools SNP 1648238 1648238 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1649895 1649895 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0027%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold102 SAMTools SNP 1650187 1650187 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold102 SAMTools SNP 1650217 1650217 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C0%2C4%3BMQ%3D49%3BFQ%3D41%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold102 SAMTools SNP 1650310 1650310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold102 SAMTools SNP 1651086 1651086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold102 SAMTools SNP 1651274 1651274 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651292 1651292 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.19%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651456 1651456 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651546 1651546 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold102 SAMTools SNP 1651560 1651560 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651789 1651789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold102 SAMTools SNP 1651978 1651978 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold102 SAMTools SNP 1651990 1651990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1652036 1652036 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold102 SAMTools SNP 1652039 1652039 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold102 SAMTools SNP 1652475 1652475 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1652555 1652555 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C10%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold102 SAMTools SNP 1653009 1653009 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C1%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold102 SAMTools SNP 1653031 1653031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold102 SAMTools SNP 1653598 1653598 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C9%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold102 SAMTools SNP 1653637 1653637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold102 SAMTools SNP 1653666 1653666 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C0%2C16%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0012%2C1.5e-05%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 1654205 1654205 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C52%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654213 1654213 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654360 1654360 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold102 SAMTools SNP 1654381 1654381 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.029%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 1654413 1654413 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold102 SAMTools SNP 1654441 1654441 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654807 1654807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold102 SAMTools SNP 1654811 1654811 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C0.28%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold102 SAMTools SNP 1656700 1656700 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 1657545 1657545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold102 SAMTools SNP 1657547 1657547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C4%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold102 SAMTools SNP 1657587 1657587 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C27%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1.4e-05%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold102 SAMTools SNP 1657595 1657595 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C1%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.02%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 1657871 1657871 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold102 SAMTools SNP 1657891 1657891 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1657910 1657910 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold102 SAMTools SNP 1657942 1657942 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C6%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.044%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold102 SAMTools SNP 1658148 1658148 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C11%2C20%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold102 SAMTools SNP 1670027 1670027 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold102 SAMTools SNP 1671912 1671912 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold102 SAMTools SNP 1674642 1674642 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold102 SAMTools SNP 1674776 1674776 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold102 SAMTools SNP 1679293 1679293 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold102 SAMTools SNP 1679484 1679484 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold102 SAMTools SNP 1680014 1680014 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1680035 1680035 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1680136 1680136 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1681045 1681045 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.7e-05%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold102 SAMTools SNP 1681170 1681170 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1681406 1681406 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1681461 1681461 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1681810 1681810 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1684416 1684416 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold102 SAMTools SNP 1684900 1684900 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold102 SAMTools SNP 1684918 1684918 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1685487 1685487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.21%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold102 SAMTools SNP 1685886 1685886 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold102 SAMTools SNP 1686640 1686640 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold102 SAMTools SNP 1687020 1687020 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold102 SAMTools SNP 1696680 1696680 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold102 SAMTools SNP 1697811 1697811 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.087%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold102 SAMTools SNP 1697814 1697814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold102 SAMTools SNP 1697823 1697823 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C150:99 scaffold102 SAMTools SNP 1697871 1697871 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.022%2C0.083%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold102 SAMTools SNP 1698653 1698653 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 1698683 1698683 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-06%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1699258 1699258 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold102 SAMTools SNP 1709520 1709520 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold102 SAMTools SNP 1709525 1709525 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold102 SAMTools SNP 1721699 1721699 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1020 SAMTools SNP 3363 3363 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 3393 3393 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1020 SAMTools SNP 10765 10765 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 42414 42414 58.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1020 SAMTools SNP 43681 43681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 140682 140682 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1020 SAMTools SNP 140802 140802 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1020 SAMTools SNP 163415 163415 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1020 SAMTools SNP 163468 163468 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1020 SAMTools SNP 175893 175893 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1020 SAMTools SNP 176859 176859 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 176876 176876 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1020 SAMTools SNP 178218 178218 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 178251 178251 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 178954 178954 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C74:52 scaffold1020 SAMTools SNP 189534 189534 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1020 SAMTools SNP 205887 205887 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 205930 205930 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 209928 209928 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 210935 210935 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 210949 210949 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 215780 215780 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C63%2C0:99 scaffold1020 SAMTools SNP 216016 216016 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1020 SAMTools SNP 219078 219078 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 219096 219096 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 219300 219300 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1020 SAMTools SNP 226941 226941 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 230371 230371 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 230416 230416 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1020 SAMTools SNP 319983 319983 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 321245 321245 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C100:99 scaffold1020 SAMTools SNP 321296 321296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1020 SAMTools SNP 321328 321328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C10%2C7%3BMQ%3D47%3BFQ%3D198%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1020 SAMTools SNP 322909 322909 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C4%3BMQ%3D44%3BFQ%3D50%3BPV4%3D1%2C0.014%2C0.0055%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1020 SAMTools SNP 330089 330089 79.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C15%2C0:27 scaffold1020 SAMTools SNP 331587 331587 8.67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C24%2C0:29 scaffold1021 SAMTools SNP 3623 3623 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3644 3644 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3730 3730 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3754 3754 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 6175 6175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 6371 6371 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C52%2C24%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 6473 6473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1021 SAMTools SNP 6494 6494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1021 SAMTools SNP 6940 6940 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 7329 7329 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1021 SAMTools SNP 7800 7800 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1021 SAMTools SNP 8461 8461 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1021 SAMTools SNP 8572 8572 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 14410 14410 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1021 SAMTools SNP 15171 15171 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 15173 15173 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 21726 21726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1021 SAMTools SNP 21827 21827 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1021 SAMTools SNP 22003 22003 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1021 SAMTools SNP 22069 22069 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 22135 22135 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1021 SAMTools SNP 23030 23030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 23217 23217 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold1021 SAMTools SNP 25362 25362 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C211:99 scaffold1021 SAMTools SNP 25414 25414 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.24%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1021 SAMTools SNP 28817 28817 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C26:57 scaffold1021 SAMTools SNP 28827 28827 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.044%2C0.0027%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1021 SAMTools SNP 28830 28830 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C0.0074%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1021 SAMTools SNP 29611 29611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1021 SAMTools SNP 29885 29885 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1021 SAMTools SNP 29939 29939 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C39%2C0:75 scaffold1021 SAMTools SNP 35380 35380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1021 SAMTools SNP 37374 37374 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 38587 38587 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.32%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1021 SAMTools SNP 38593 38593 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1021 SAMTools SNP 39202 39202 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.72%2C3.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1021 SAMTools SNP 39872 39872 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1021 SAMTools SNP 39896 39896 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1021 SAMTools SNP 40037 40037 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1021 SAMTools SNP 40359 40359 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C15%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.09%2C4.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1021 SAMTools SNP 40803 40803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C49%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1021 SAMTools SNP 41192 41192 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C241:99 scaffold1021 SAMTools SNP 55040 55040 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 61730 61730 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C45%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.014%2C0.37%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C37:40 scaffold1021 SAMTools SNP 62129 62129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D44%2C2%2C195%2C120%3BMQ%3D50%3BFQ%3D-80%3BPV4%3D6e-07%2C0.47%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C53%2C0:99 scaffold1021 SAMTools SNP 62216 62216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C239%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 62225 62225 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C194%2C10%2C36%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.18%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1021 SAMTools SNP 62434 62434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C48%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1021 SAMTools SNP 62470 62470 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 63862 63862 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C87%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 64034 64034 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1021 SAMTools SNP 65907 65907 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 67184 67184 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1021 SAMTools SNP 67189 67189 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1021 SAMTools SNP 81815 81815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C123%2C22%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 81866 81866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C335%2C55%2C276%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.008%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 85231 85231 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C141%2C468%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 85286 85286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C56%2C82%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 90296 90296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C173%2C9%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 90308 90308 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C31%2C298%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 92937 92937 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 92938 92938 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 97562 97562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1021 SAMTools SNP 97586 97586 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.068%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold1021 SAMTools SNP 97607 97607 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1021 SAMTools SNP 97889 97889 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C138%2C0:99 scaffold1021 SAMTools SNP 114004 114004 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1021 SAMTools SNP 119093 119093 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 119686 119686 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1021 SAMTools SNP 119699 119699 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 126569 126569 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1021 SAMTools SNP 128571 128571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 128593 128593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C16%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1021 SAMTools SNP 128822 128822 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1021 SAMTools SNP 129484 129484 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1021 SAMTools SNP 129560 129560 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1021 SAMTools SNP 129587 129587 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 169995 169995 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1021 SAMTools SNP 171602 171602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 200374 200374 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 225866 225866 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1021 SAMTools SNP 236933 236933 16.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1021 SAMTools SNP 242695 242695 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 244850 244850 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1021 SAMTools SNP 248451 248451 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1021 SAMTools SNP 259375 259375 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C80:59 scaffold1021 SAMTools SNP 259687 259687 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1021 SAMTools SNP 290494 290494 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1021 SAMTools SNP 291717 291717 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 292534 292534 9.63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold1021 SAMTools SNP 292555 292555 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1021 SAMTools SNP 292785 292785 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 293004 293004 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.52%2C7.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1021 SAMTools SNP 326357 326357 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 326373 326373 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 327912 327912 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1021 SAMTools SNP 327922 327922 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1021 SAMTools SNP 328059 328059 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.032%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1021 SAMTools SNP 328477 328477 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold1021 SAMTools SNP 328674 328674 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1021 SAMTools SNP 328846 328846 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1021 SAMTools SNP 328895 328895 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C0.046%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C68:43 scaffold1021 SAMTools SNP 330164 330164 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C72%2C0:99 scaffold1021 SAMTools SNP 330225 330225 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C13%2C6%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1021 SAMTools SNP 330626 330626 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C3.9e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1021 SAMTools SNP 330754 330754 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1021 SAMTools SNP 332226 332226 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1021 SAMTools SNP 332996 332996 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold1021 SAMTools SNP 333552 333552 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1021 SAMTools SNP 338582 338582 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold1021 SAMTools SNP 353660 353660 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1021 SAMTools SNP 353672 353672 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1021 SAMTools SNP 358678 358678 35.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1021 SAMTools SNP 359122 359122 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1021 SAMTools SNP 359751 359751 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold1021 SAMTools SNP 360249 360249 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 360501 360501 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1021 SAMTools SNP 360506 360506 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 360509 360509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C46%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1021 SAMTools SNP 361346 361346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C44%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.00081%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1021 SAMTools SNP 369473 369473 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1021 SAMTools SNP 382143 382143 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold1021 SAMTools SNP 387108 387108 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C13%3BMQ%3D47%3BFQ%3D155%3BPV4%3D1%2C0.16%2C0.084%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C244:99 scaffold1021 SAMTools SNP 388630 388630 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold1021 SAMTools SNP 391291 391291 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D43%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C26:29 scaffold1021 SAMTools SNP 391332 391332 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold1021 SAMTools SNP 391383 391383 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C0.4%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C26:29 scaffold1021 SAMTools SNP 392933 392933 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C0.32%2C0.37%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C26:29 scaffold1021 SAMTools SNP 408980 408980 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1021 SAMTools SNP 409021 409021 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1021 SAMTools SNP 423639 423639 116 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold1021 SAMTools SNP 423641 423641 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1021 SAMTools SNP 443356 443356 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1021 SAMTools SNP 447217 447217 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1021 SAMTools SNP 447280 447280 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1021 SAMTools SNP 456565 456565 15.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1021 SAMTools SNP 456746 456746 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C1%2C5%3BMQ%3D26%3BFQ%3D51%3BPV4%3D0.28%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C146:81 scaffold1021 SAMTools SNP 457812 457812 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C16%3BMQ%3D29%3BFQ%3D45%3BPV4%3D1%2C0.21%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C180:75 scaffold1021 SAMTools SNP 458145 458145 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 461731 461731 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1021 SAMTools SNP 463003 463003 56.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C5%2C0:9 scaffold1021 SAMTools SNP 467962 467962 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1021 SAMTools SNP 473280 473280 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1021 SAMTools SNP 473288 473288 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1021 SAMTools SNP 486498 486498 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 487685 487685 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 487702 487702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 489740 489740 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 495799 495799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.12%2C0.49%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1021 SAMTools SNP 495823 495823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.016%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1021 SAMTools SNP 495826 495826 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C25%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1021 SAMTools SNP 496495 496495 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.033%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1021 SAMTools SNP 496496 496496 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 496768 496768 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C41%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C2.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C253:99 scaffold1021 SAMTools SNP 497064 497064 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1021 SAMTools SNP 498942 498942 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C75%2C0:99 scaffold1021 SAMTools SNP 499055 499055 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.37%2C0.34%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C205:99 scaffold1021 SAMTools SNP 500843 500843 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 500852 500852 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 500968 500968 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold1021 SAMTools SNP 502248 502248 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold1021 SAMTools SNP 502275 502275 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1021 SAMTools SNP 502752 502752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1021 SAMTools SNP 502796 502796 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1021 SAMTools SNP 502802 502802 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1021 SAMTools SNP 504562 504562 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1021 SAMTools SNP 505082 505082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C14%2C9%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.08%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold1021 SAMTools SNP 506730 506730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1021 SAMTools SNP 506796 506796 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 506805 506805 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1021 SAMTools SNP 508158 508158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 508188 508188 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 509308 509308 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 509332 509332 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1021 SAMTools SNP 509822 509822 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1021 SAMTools SNP 509850 509850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 510259 510259 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1021 SAMTools SNP 510283 510283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1021 SAMTools SNP 510591 510591 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1021 SAMTools SNP 510973 510973 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 513171 513171 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1021 SAMTools SNP 538711 538711 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 538751 538751 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 538756 538756 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 553241 553241 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 553313 553313 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1021 SAMTools SNP 558530 558530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1021 SAMTools SNP 558598 558598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 564741 564741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1021 SAMTools SNP 564744 564744 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1021 SAMTools SNP 566638 566638 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C48%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1021 SAMTools SNP 566714 566714 46.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1021 SAMTools SNP 573436 573436 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C2.6e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C254:99 scaffold1021 SAMTools SNP 573672 573672 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1021 SAMTools SNP 576173 576173 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.59%2C1%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1021 SAMTools SNP 576229 576229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1021 SAMTools SNP 576348 576348 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1021 SAMTools SNP 576350 576350 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.01%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1021 SAMTools SNP 576352 576352 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1021 SAMTools SNP 586507 586507 40.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1021 SAMTools SNP 591382 591382 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1021 SAMTools SNP 599047 599047 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 599050 599050 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 599055 599055 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 600832 600832 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 696681 696681 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 697519 697519 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 709748 709748 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1021 SAMTools SNP 709751 709751 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1021 SAMTools SNP 710676 710676 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1021 SAMTools SNP 710687 710687 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1021 SAMTools SNP 714974 714974 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1021 SAMTools SNP 715775 715775 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 715783 715783 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 717460 717460 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1021 SAMTools SNP 717478 717478 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1021 SAMTools SNP 727517 727517 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 731208 731208 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 731223 731223 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold1021 SAMTools SNP 731722 731722 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold1021 SAMTools SNP 757791 757791 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1024 SAMTools SNP 326 326 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1024 SAMTools SNP 855 855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1024 SAMTools SNP 882 882 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1024 SAMTools SNP 923 923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 5427 5427 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 5932 5932 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 5972 5972 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1024 SAMTools SNP 6015 6015 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D1%2C0.05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C80:68 scaffold1024 SAMTools SNP 6339 6339 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 6454 6454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1024 SAMTools SNP 8107 8107 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1024 SAMTools SNP 8145 8145 173 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C69%2C0%2C199%2C48%2C196:99 scaffold1024 SAMTools SNP 8172 8172 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1024 SAMTools SNP 8617 8617 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 64109 64109 43.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1024 SAMTools SNP 64164 64164 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1024 SAMTools SNP 66792 66792 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1024 SAMTools SNP 67432 67432 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1024 SAMTools SNP 208420 208420 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1024 SAMTools SNP 208432 208432 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1024 SAMTools SNP 213080 213080 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1024 SAMTools SNP 216410 216410 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 216446 216446 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 216467 216467 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 217124 217124 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1024 SAMTools SNP 217253 217253 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C132%2C0:99 scaffold1024 SAMTools SNP 217337 217337 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C20%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.085%2C3.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1024 SAMTools SNP 218006 218006 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.37%2C1.5e-16%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C137:99 scaffold1024 SAMTools SNP 218182 218182 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1024 SAMTools SNP 224595 224595 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1024 SAMTools SNP 226121 226121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 228109 228109 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C47%2C55%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 228577 228577 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C46%2C51%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 228631 228631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C71%2C5%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 229707 229707 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 238311 238311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 239918 239918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C5%2C62%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 241632 241632 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1024 SAMTools SNP 241647 241647 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C11%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.41%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1024 SAMTools SNP 246733 246733 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1024 SAMTools SNP 246881 246881 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.058%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1024 SAMTools SNP 249904 249904 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C132%2C2%2C152%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C5.5e-267%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1024 SAMTools SNP 249913 249913 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C151%2C1%2C130%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C4.1e-191%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 250166 250166 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold1024 SAMTools SNP 250461 250461 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.029%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C175:99 scaffold1024 SAMTools SNP 251747 251747 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1024 SAMTools SNP 252779 252779 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C5%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.26%2C0.42%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1024 SAMTools SNP 252780 252780 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C5%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.27%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1024 SAMTools SNP 256389 256389 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 256905 256905 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 258111 258111 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.012%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 258578 258578 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 258587 258587 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.063%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1024 SAMTools SNP 258608 258608 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 258650 258650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C29%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1024 SAMTools SNP 268886 268886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1024 SAMTools SNP 273592 273592 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C4.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1024 SAMTools SNP 274357 274357 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 274884 274884 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.5%2C0.055%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C157:44 scaffold1024 SAMTools SNP 275968 275968 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1024 SAMTools SNP 281409 281409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 301830 301830 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C0.0048%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1024 SAMTools SNP 342736 342736 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1024 SAMTools SNP 347505 347505 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 353398 353398 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 376897 376897 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C98:34 scaffold1024 SAMTools SNP 379061 379061 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1024 SAMTools SNP 379164 379164 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold1024 SAMTools SNP 380386 380386 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 380422 380422 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1024 SAMTools SNP 380479 380479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 381089 381089 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1024 SAMTools SNP 381126 381126 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1024 SAMTools SNP 381424 381424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1024 SAMTools SNP 381463 381463 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.03%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1024 SAMTools SNP 423781 423781 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1024 SAMTools SNP 424575 424575 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1024 SAMTools SNP 424626 424626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 424629 424629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 425085 425085 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 425643 425643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 426291 426291 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 426312 426312 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 426622 426622 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 427077 427077 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 427078 427078 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428669 428669 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428687 428687 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428737 428737 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 429081 429081 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C38:41 scaffold1024 SAMTools SNP 429096 429096 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 429105 429105 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1024 SAMTools SNP 429132 429132 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold1024 SAMTools SNP 429490 429490 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 429526 429526 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 430128 430128 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 430177 430177 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1024 SAMTools SNP 432805 432805 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 432810 432810 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1024 SAMTools SNP 437219 437219 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.061%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1024 SAMTools SNP 437282 437282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1024 SAMTools SNP 439449 439449 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 439467 439467 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C64:67 scaffold1024 SAMTools SNP 439883 439883 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 439892 439892 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 440173 440173 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 440725 440725 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1024 SAMTools SNP 446076 446076 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 446346 446346 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1024 SAMTools SNP 447360 447360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1024 SAMTools SNP 447651 447651 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1024 SAMTools SNP 447729 447729 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 447731 447731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 447739 447739 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1024 SAMTools SNP 447958 447958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1024 SAMTools SNP 447985 447985 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C171:99 scaffold1024 SAMTools SNP 448001 448001 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold1024 SAMTools SNP 448219 448219 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1024 SAMTools SNP 448243 448243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1024 SAMTools SNP 448421 448421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 448561 448561 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1024 SAMTools SNP 449269 449269 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1024 SAMTools SNP 449319 449319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 463003 463003 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1024 SAMTools SNP 464188 464188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 465451 465451 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1024 SAMTools SNP 466276 466276 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 469720 469720 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 470191 47