Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold198
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1589021
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.28
Warning! 220217 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:826053 original size:81 final size:81
Alignment explanation
Indices: 825928--826093 Score: 269
Period size: 81 Copynumber: 2.0 Consensus size: 81
825918 ATAACATCAT
* * * *
825928 CTTTTATGTCGATTGGTATATATGTTCATTGTAACAATAGGTTACCTTTTATGGTAATTTAACTG
1 CTTTTATGTCGACTGGTATACATGTACATTGTAACAATAGGTTACCTTTAATGGTAATTTAACTG
825993 ACGGTCATAACAGTAC
66 ACGGTCATAACAGTAC
*
826009 CTTTTATGTTGACTGGTATACATGTACATTGTAACAATAGGTTACCTTTAATGGTAATTTAACTG
1 CTTTTATGTCGACTGGTATACATGTACATTGTAACAATAGGTTACCTTTAATGGTAATTTAACTG
* *
826074 ATGGTTATAACAGTAC
66 ACGGTCATAACAGTAC
826090 CTTT
1 CTTT
826094 CATGCCGATC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (81 bp):
CTTTTATGTCGACTGGTATACATGTACATTGTAACAATAGGTTACCTTTAATGGTAATTTAACTG
ACGGTCATAACAGTAC
Found at i:828048 original size:21 final size:21
Alignment explanation
Indices: 828022--828108 Score: 104
Period size: 21 Copynumber: 4.2 Consensus size: 21
828012 TTTTTCCATC
*
828022 AAATATGTCGACATGCATGAT
1 AAATATGTCGACATGCAAGAT
*
828043 AAATATGTTGACATGCAAGAT
1 AAATATGTCGACATGCAAGAT
* * *
828064 AATTATGTCAACATGCAACAT
1 AAATATGTCGACATGCAAGAT
* *
828085 AACTATGTTGACATGCAAGA-
1 AAATATGTCGACATGCAAGAT
828105 AAAT
1 AAAT
828109 TGCAATCAGA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
20 3 0.05
21 52 0.95
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.28
Consensus pattern (21 bp):
AAATATGTCGACATGCAAGAT
Found at i:828092 original size:42 final size:42
Alignment explanation
Indices: 828025--828109 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
828015 TTCCATCAAA
* ** *
828025 TATGTCGACATGCATGATAAATATGTTGACATGCAAGATAAT
1 TATGTCAACATGCAACATAAATATGTTGACATGCAAGAAAAT
*
828067 TATGTCAACATGCAACATAACTATGTTGACATGCAAGAAAAT
1 TATGTCAACATGCAACATAAATATGTTGACATGCAAGAAAAT
828109 T
1 T
828110 GCAATCAGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (42 bp):
TATGTCAACATGCAACATAAATATGTTGACATGCAAGAAAAT
Found at i:828217 original size:21 final size:21
Alignment explanation
Indices: 828193--828402 Score: 160
Period size: 21 Copynumber: 10.0 Consensus size: 21
828183 ATGCTACCTT
828193 TTTATGTCGACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
** **
828214 TTTATGTTAACATGCAAGATA
1 TTTATGTCGACATGCAACTTA
**
828235 AATATG-CTGACATGCAACTTA
1 TTTATGTC-GACATGCAACTTA
*
828256 TTTATGTCAACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
828277 TTTATGTC-ACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
* *
828297 TATATGTCAACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
* * *
828318 CTTATGTTGACATGCGAGA-TGA
1 TTTATGTCGACATGC-A-ACTTA
* *
828340 -ATATGTTGACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
* ** *
828360 GTTATGTTAACATGCGA-TATA
1 TTTATGTCGACATGCAACT-TA
** *
828381 AATATGTTGACATGCAACTTA
1 TTTATGTCGACATGCAACTTA
828402 T
1 T
828403 AAGTTGTATG
Statistics
Matches: 151, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.01
20 23 0.15
21 121 0.80
22 5 0.03
23 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (21 bp):
TTTATGTCGACATGCAACTTA
Found at i:828387 original size:104 final size:105
Alignment explanation
Indices: 828195--828403 Score: 287
Period size: 104 Copynumber: 2.0 Consensus size: 105
828185 GCTACCTTTT
* * *
828195 TATGTCGACATGCAACTTATTTATGTTAACATGCAAGATAAATATGCTGACATGCAACTTATTTA
1 TATGTCAACATGCAACTTACTTATGTTAACATGCAAGATAAATATGCTGACATGCAACTTAGTTA
**
828260 TGTCAACATGCAACTTATTTATG-TCACATGCAACTTATA
66 TGTCAACATGCAACTTAAATATGTTCACATGCAACTTATA
* * * *
828299 TATGTCAACATGCAACTTACTTATGTTGACATGCGAGATGAATATGTTGACATGCAACTTAGTTA
1 TATGTCAACATGCAACTTACTTATGTTAACATGCAAGATAAATATGCTGACATGCAACTTAGTTA
* * *
828364 TGTTAACATGCGA-TATAAATATGTTGACATGCAACTTATA
66 TGTCAACATGCAACT-TAAATATGTTCACATGCAACTTATA
828404 AGTTGTATGT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
103 1 0.01
104 75 0.82
105 15 0.16
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (105 bp):
TATGTCAACATGCAACTTACTTATGTTAACATGCAAGATAAATATGCTGACATGCAACTTAGTTA
TGTCAACATGCAACTTAAATATGTTCACATGCAACTTATA
Found at i:828534 original size:21 final size:21
Alignment explanation
Indices: 828401--828535 Score: 153
Period size: 21 Copynumber: 6.4 Consensus size: 21
828391 CATGCAACTT
* *
828401 ATAAGTTGTATGTCAACATAA
1 ATAAGTTGCATGTCGACATAA
* * * **
828422 CTTAGTCGCATGTTAACATAA
1 ATAAGTTGCATGTCGACATAA
*
828443 CTAAGTTGCATGTCGACATAA
1 ATAAGTTGCATGTCGACATAA
828464 ATAAGTTGCATGTCGACATAA
1 ATAAGTTGCATGTCGACATAA
*
828485 AGAAGTTGCATGTCGACATAA
1 ATAAGTTGCATGTCGACATAA
* * *
828506 AGAAGTTGCATGTTGACATCA
1 ATAAGTTGCATGTCGACATAA
*
828527 ATAGGTTGC
1 ATAAGTTGC
828536 GTATCTAGCA
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 99 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (21 bp):
ATAAGTTGCATGTCGACATAA
Found at i:828627 original size:21 final size:21
Alignment explanation
Indices: 828603--828687 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
828593 ATTTGATTGC
*
828603 AGTTTTCTTGCATGTCAACAT
1 AGTTATCTTGCATGTCAACAT
* * *
828624 AGTTATGTTGCATGTTAAAAT
1 AGTTATCTTGCATGTCAACAT
**
828645 AACTATCTTGCATGTCAACAT
1 AGTTATCTTGCATGTCAACAT
* *
828666 ATTTATCTTGCATGTCCACAT
1 AGTTATCTTGCATGTCAACAT
828687 A
1 A
828688 ATTAATAGAA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (21 bp):
AGTTATCTTGCATGTCAACAT
Found at i:829789 original size:19 final size:20
Alignment explanation
Indices: 829762--829800 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
829752 CAATAATTCG
829762 AATTATTGATATCAA-AAAT
1 AATTATTGATATCAAGAAAT
*
829781 AATTCTTGATATCAAGAAAT
1 AATTATTGATATCAAGAAAT
829801 CTACTTTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (20 bp):
AATTATTGATATCAAGAAAT
Found at i:829794 original size:41 final size:43
Alignment explanation
Indices: 829746--829854 Score: 109
Period size: 41 Copynumber: 2.6 Consensus size: 43
829736 AATAAATAGC
*
829746 TGATATCAATAATTCGAATTAT-TGATATCA-AAAAT-AATTCT
1 TGATATCAATAATTCGAATT-TGTGAAATCAGAAAATCAATTCT
* * * * *
829787 TGATATCAAGAAATCTACTTTGTGAAATCAGAAAATCATTTCT
1 TGATATCAATAATTCGAATTTGTGAAATCAGAAAATCAATTCT
*
829830 TGATATC-ATAAATTCGAATTCGTGA
1 TGATATCAAT-AATTCGAATTTGTGA
829855 TATTAAGAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
40 1 0.02
41 23 0.43
42 6 0.11
43 23 0.43
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (43 bp):
TGATATCAATAATTCGAATTTGTGAAATCAGAAAATCAATTCT
Found at i:829966 original size:22 final size:21
Alignment explanation
Indices: 829941--830088 Score: 79
Period size: 21 Copynumber: 6.7 Consensus size: 21
829931 AAATGAATTC
829941 TTGATATCAGAAAATAATTTTT
1 TTGATATCAGAAAATAA-TTTT
* *
829963 TTGATATCAAAAAATCGAA-TTA
1 TTGATATCAGAAAAT--AATTTT
*
829985 TTAATATCA-AAAA-ACATTTT
1 TTGATATCAGAAAATA-ATTTT
* * *
830005 TTGATATAAAAAAAAAATTTGTATTT
1 TTGATATCAGAAAATAA----T-TTT
* *
830031 TCTGATATCAAAAAAATAA-TTC
1 T-TGATATC-AGAAAATAATTTT
*
830053 TTGATATCAGAAAATGATTTT
1 TTGATATCAGAAAATAATTTT
*
830074 CTGATATCAGAAAAT
1 TTGATATCAGAAAAT
830089 GTGTTATTTT
Statistics
Matches: 99, Mismatches: 13, Indels: 29
0.70 0.09 0.21
Matches are distributed among these distances:
18 1 0.01
19 1 0.01
20 16 0.16
21 32 0.32
22 28 0.28
24 2 0.02
25 1 0.01
26 4 0.04
27 6 0.06
28 8 0.08
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (21 bp):
TTGATATCAGAAAATAATTTT
Found at i:829968 original size:112 final size:112
Alignment explanation
Indices: 829881--830088 Score: 289
Period size: 111 Copynumber: 1.9 Consensus size: 112
829871 TCCGATATCA
* * ** *
829881 CAAAAAAGATTTTTTGATATCAAGAATTAAAGTTG-ATTTT-TTATAT-AAAAAAATGAATTCTT
1 CAAAAAACATTTTTTGATAT-AAAAAAAAAAGTTGTATTTTCTGATATCAAAAAAAT-AATTCTT
829943 GATATCAGAAAATAATTTTTTTGATATCAAAAAATCGAATTATTAATAT
64 GATATCAGAAAATAATTTTTTTGATATCAAAAAATCGAATTATTAATAT
*
829992 CAAAAAACATTTTTTGATATAAAAAAAAAATTTGTATTTTCTGATATCAAAAAAATAATTCTTGA
1 CAAAAAACATTTTTTGATATAAAAAAAAAAGTTGTATTTTCTGATATCAAAAAAATAATTCTTGA
* * *
830057 TATCAGAAAATGA-TTTTCTGATATCAGAAAAT
66 TATCAGAAAATAATTTTTTTGATATCAAAAAAT
830089 GTGTTATTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
110 10 0.12
111 41 0.48
112 26 0.31
113 8 0.09
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (112 bp):
CAAAAAACATTTTTTGATATAAAAAAAAAAGTTGTATTTTCTGATATCAAAAAAATAATTCTTGA
TATCAGAAAATAATTTTTTTGATATCAAAAAATCGAATTATTAATAT
Found at i:829975 original size:42 final size:42
Alignment explanation
Indices: 829916--830018 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
829906 ATTAAAGTTG
* *
829916 ATTTTTT-ATATAAAAAAAT-GAATTCTTGATATCAGAAAATA-
1 ATTTTTTGATATAAAAAAATCGAATTATTAATATCA-AAAA-AC
*
829957 ATTTTTTTGATATCAAAAAATCGAATTATTAATATCAAAAAAC
1 A-TTTTTTGATATAAAAAAATCGAATTATTAATATCAAAAAAC
830000 ATTTTTTGATATAAAAAAA
1 ATTTTTTGATATAAAAAAA
830019 AAATTTGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.44
43 16 0.30
44 13 0.24
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (42 bp):
ATTTTTTGATATAAAAAAATCGAATTATTAATATCAAAAAAC
Found at i:830020 original size:44 final size:44
Alignment explanation
Indices: 829917--830019 Score: 119
Period size: 43 Copynumber: 2.4 Consensus size: 44
829907 TTAAAGTTGA
* *
829917 TTTTTT-ATAT-AAAAAAATGAATTCTTGATATCAGAAAATAAT
1 TTTTTTGATATAAAAAAAATGAATTATTAATATCAGAAAATAAT
*
829959 TTTTTTGATAT-CAAAAAATCGAATTATTAATATCA-AAAA-ACA-
1 TTTTTTGATATAAAAAAAAT-GAATTATTAATATCAGAAAATA-AT
830001 TTTTTTGATATAAAAAAAA
1 TTTTTTGATATAAAAAAAA
830020 AATTTGTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 18 0.34
43 22 0.42
44 13 0.25
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (44 bp):
TTTTTTGATATAAAAAAAATGAATTATTAATATCAGAAAATAAT
Found at i:830043 original size:23 final size:22
Alignment explanation
Indices: 830017--830178 Score: 68
Period size: 21 Copynumber: 7.2 Consensus size: 22
830007 GATATAAAAA
830017 AAAAATTTGTATTTTCTGATATC
1 AAAAATTTG-ATTTTCTGATATC
** * *
830040 AAAAAAATAATTCT-TGATATC
1 AAAAATTTGATTTTCTGATATC
830061 AGAAAA--TGATTTTCTGATATC
1 A-AAAATTTGATTTTCTGATATC
*
830082 AGAAAATGTGTTATTTT-T-ATATC
1 A-AAAAT-T-TGATTTTCTGATATC
* * * *
830105 ACGAAA-TCGATTTTTTTAATAT-
1 A-AAAATTTGA-TTTTCTGATATC
830127 AAAAATGGATTGTATTTTCTGATATC
1 AAAAAT---TTG-ATTTTCTGATATC
* * *
830153 AAGAATTCGAATTTCTGATATC
1 AAAAATTTGATTTTCTGATATC
830175 AAAA
1 AAAA
830179 TATCATTTTA
Statistics
Matches: 105, Mismatches: 19, Indels: 31
0.68 0.12 0.20
Matches are distributed among these distances:
20 6 0.06
21 29 0.28
22 25 0.24
23 21 0.20
24 1 0.01
25 17 0.16
26 6 0.06
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.41
Consensus pattern (22 bp):
AAAAATTTGATTTTCTGATATC
Found at i:830059 original size:21 final size:22
Alignment explanation
Indices: 829874--830087 Score: 101
Period size: 22 Copynumber: 9.5 Consensus size: 22
829864 ATGATTTTCC
*
829874 GATATCACAAAAAA-GATTTTTT
1 GATATCA-AAAAAATGAATTTTT
829896 GATATCAAGAATTAAAGTTG-ATTTTT
1 GATATCAA-AA--AAA--TGAATTTTT
* *
829922 TATAT-AAAAAAATGAATTCTT
1 GATATCAAAAAAATGAATTTTT
*
829943 GATATCAGAAAATAAT--TTTTTT
1 GATATCA-AAAA-AATGAATTTTT
*
829965 GATATC-AAAAAATCGAATTATT
1 GATATCAAAAAAAT-GAATTTTT
*
829987 AATATCAAAAAACAT---TTTTT
1 GATATCAAAAAA-ATGAATTTTT
* *
830007 GATATAAAAAAAAAATTTGTATTTTCT
1 GATAT--CAAAAAAA--TGAATTTT-T
*
830034 GATATCAAAAAAAT-AATTCTT
1 GATATCAAAAAAATGAATTTTT
*
830055 GATATC-AGAAAATG-ATTTTCT
1 GATATCAAAAAAATGAATTTT-T
*
830076 GATATCAGAAAA
1 GATATCAAAAAA
830088 TGTGTTATTT
Statistics
Matches: 147, Mismatches: 19, Indels: 52
0.67 0.09 0.24
Matches are distributed among these distances:
19 3 0.02
20 24 0.16
21 25 0.17
22 45 0.31
23 11 0.07
24 10 0.07
25 9 0.06
26 13 0.09
27 7 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (22 bp):
GATATCAAAAAAATGAATTTTT
Found at i:830088 original size:21 final size:21
Alignment explanation
Indices: 830027--830089 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
830017 AAAAATTTGT
* *
830027 ATTTTCTGATATCAAAAAAATA
1 ATTTTCTGATATC-AGAAAATG
*
830049 ATTCT-TGATATCAGAAAATG
1 ATTTTCTGATATCAGAAAATG
830069 ATTTTCTGATATCAGAAAATG
1 ATTTTCTGATATCAGAAAATG
830090 TGTTATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 10 0.28
21 22 0.61
22 4 0.11
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (21 bp):
ATTTTCTGATATCAGAAAATG
Found at i:830104 original size:112 final size:112
Alignment explanation
Indices: 829881--830154 Score: 283
Period size: 111 Copynumber: 2.4 Consensus size: 112
829871 TCCGATATCA
* * * *
829881 CAAAAAAGATTTTTTGATATCAAGAATTAAAGTTG-ATTTT-TTATAT-AAAAAAATGAATTCTT
1 CAAAAAACATTTTTTGATAT-AAAAAATAAA-TTGTATTTTCTGATATCAAAAAAATGAATTCTT
*
829943 GATATCAGAAAATAATTTTTTTGATATCAAAAAATCGAATTATTAATAT
64 GATATCAGAAAATAATTTTTCTGATATCAAAAAATCGAATTATTAATAT
*
829992 CAAAAAACATTTTTTGATATAAAAAAAAAATTTGTATTTTCTGATATCAAAAAAAT-AATTCTTG
1 CAAAAAACATTTTTTGATATAAAAAATAAA-TTGTATTTTCTGATATCAAAAAAATGAATTCTTG
* * ** *
830056 ATATCAGAAAATGA-TTTTCTGATATCAGAAAAT-GTGTTATTTTTATAT
65 ATATCAGAAAATAATTTTTCTGATATCAAAAAATCGAATTA--TTAATAT
* * * **
830104 CACGAAATCGATTTTTTTA-ATATAAAAATGGATTGTATTTTCTGATATCAA
1 CA-AAAAAC-ATTTTTTGATATA-AAAAATAAATTGTATTTTCTGATATCAA
830155 GAATTCGAAT
Statistics
Matches: 137, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
110 14 0.10
111 41 0.30
112 34 0.25
113 34 0.25
114 14 0.10
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.40
Consensus pattern (112 bp):
CAAAAAACATTTTTTGATATAAAAAATAAATTGTATTTTCTGATATCAAAAAAATGAATTCTTGA
TATCAGAAAATAATTTTTCTGATATCAAAAAATCGAATTATTAATAT
Found at i:832617 original size:21 final size:21
Alignment explanation
Indices: 832555--832660 Score: 117
Period size: 21 Copynumber: 5.0 Consensus size: 21
832545 ATTGTTCTAT
*
832555 TATATACTGGTCT-GTCTATTA
1 TATATACTGGTCTATTC-ATTA
* * *
832576 TGTATGCTGCTCTATAT-ATTA
1 TATATACTGGTCTAT-TCATTA
* *
832597 TATATACTGGTATATCCATTA
1 TATATACTGGTCTATTCATTA
832618 TATATACTGGTCTATTCATTA
1 TATATACTGGTCTATTCATTA
*
832639 TATCTACTGGTCTATTCATTA
1 TATATACTGGTCTATTCATTA
832660 T
1 T
832661 TAAACTAAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
21 69 0.99
23 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.47
Consensus pattern (21 bp):
TATATACTGGTCTATTCATTA
Found at i:835253 original size:25 final size:25
Alignment explanation
Indices: 835218--835326 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 25
835208 GAAAGCTGTG
*
835218 GAGGATCTCCGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
835243 GAGGATATCCGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
* **
835268 GAGGATATCCGTG-AAGATAACATTA
1 GAGGATATCCGAGTAAG-TAACGGTA
* * * *
835293 AAGGATAGCTGAGTAAGTAATGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
835318 GAGGATATC
1 GAGGATATC
835327 TAAGTAGGTA
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 3 0.04
25 63 0.91
26 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (25 bp):
GAGGATATCCGAGTAAGTAACGGTA
Found at i:835332 original size:25 final size:25
Alignment explanation
Indices: 835218--835339 Score: 120
Period size: 25 Copynumber: 4.9 Consensus size: 25
835208 GAAAGCTGTG
* *
835218 GAGGATCTCCGAGTAAGTAACGGTA
1 GAGGATATCTGAGTAAGTAACGGTA
*
835243 GAGGATATCCGAGTAAGTAACGGTA
1 GAGGATATCTGAGTAAGTAACGGTA
* * **
835268 GAGGATATCCGTG-AAGATAACATTA
1 GAGGATATCTGAGTAAG-TAACGGTA
* * *
835293 AAGGATAGCTGAGTAAGTAATGGTA
1 GAGGATATCTGAGTAAGTAACGGTA
* *
835318 GAGGATATCTAAGTAGGTAACG
1 GAGGATATCTGAGTAAGTAACG
835340 TNATACGGGG
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
24 3 0.04
25 73 0.92
26 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (25 bp):
GAGGATATCTGAGTAAGTAACGGTA
Found at i:835693 original size:25 final size:25
Alignment explanation
Indices: 835658--836048 Score: 383
Period size: 25 Copynumber: 15.6 Consensus size: 25
835648 GAAAGCTGTG
*
835658 GAGGATCTCCGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
835683 GAGGATATCCGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
* **
835708 GAGGATATCCGTG-AAGATAACATTA
1 GAGGATATCCGAGTAAG-TAACGGTA
* * * *
835733 AAGGATAGCTGAGTAAGTAATGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
** * *
835758 GAGGATATCTAAGTAGGTAACGTTA
1 GAGGATATCCGAGTAAGTAACGGTA
* *
835783 GAGGATAGCCGAGTAAGTAACGATA
1 GAGGATATCCGAGTAAGTAACGGTA
* * * *
835808 GAGGATATCAGAGTAGGTAATGTTA
1 GAGGATATCCGAGTAAGTAACGGTA
* * *
835833 GAGGATATCCGAGGAATTAACGGTT
1 GAGGATATCCGAGTAAGTAACGGTA
*
835858 GA-GATTATCCGAGTAAGTAACGGTT
1 GAGGA-TATCCGAGTAAGTAACGGTA
*
835883 GAGGATATCTGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
* ** ** *
835908 AAGGATATCTAAGTTGGTAACGTTA
1 GAGGATATCCGAGTAAGTAACGGTA
* * * *
835933 GAGGATATCAGAGTAGGTAATGTTA
1 GAGGATATCCGAGTAAGTAACGGTA
*
835958 GAGGATATCCGAGTAAGTAACGGCA
1 GAGGATATCCGAGTAAGTAACGGTA
* *
835983 GAGGTTATCAGAGTAAGTAACGGTA
1 GAGGATATCCGAGTAAGTAACGGTA
* *
836008 GAGGATATCCGAAT-AGATAACGTTA
1 GAGGATATCCGAGTAAG-TAACGGTA
*
836033 GAGGATATTCGAGTAA
1 GAGGATATCCGAGTAA
836049 ATAGTTGTAG
Statistics
Matches: 298, Mismatches: 62, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
24 7 0.02
25 285 0.96
26 6 0.02
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.24
Consensus pattern (25 bp):
GAGGATATCCGAGTAAGTAACGGTA
Found at i:835723 original size:440 final size:439
Alignment explanation
Indices: 834902--835780 Score: 1749
Period size: 440 Copynumber: 2.0 Consensus size: 439
834892 TAGATGTTCC
834902 ATACGGGGGAATGGTTCTATTCAGCAATGTCATACCCCATCAGAGGTAAGAATATCAGCATCTTT
1 ATACGGGGGAATGGTTCTATTCAGCAATGTCATACCCCATCAGAGGTAAGAATATCAGCATCTTT
834967 GGCATCAGAAGATAAGACTTCTTTAAATTTTCTATTATTATTTTGTGATTATTGTATATTTTAGC
66 GGCATCAGAAGATAAGACTTCTTTAAATTTTCTATTATTATTTTGTGATTATTGTATATTTTAGC
835032 TTGCCCAATGTTACAAACAAGATTCGATGGTCCATGGATCTCAGATGGCAAGATGCAAACAAGCC
131 TTGCCCAATGTTACAAACAAGATTCGATGGTCCATGGATCTCAGATGGCAAGATGCAAACAAGCC
835097 TCCTGCGTTCCATGGTCTGAAAAACCACATTGTTTTCCGGACAGAAAAAGAGCCTAACCACGTGA
196 TCCTGCGTTCCATGGTCTGAAAAACCACATTGTTTTCCGGACAGAAAAAGAGCCTAACCACGTGA
835162 TTGACTGGGCGACCTTTGAGGCAGTAGACAGAACGAAAGTCCAGCTGAAAGCTGTGGAGGATCTC
261 TTGACTGGGCGACCTTTGAGGCAGTAGACAGAACGAAAGTCCAGCTGAAAGCTGTGGAGGATCTC
835227 CGAGTAAGTAACGGTAGAGGATATCCGAGTAAGTAACGGTAGAGGATATCCGTGAAGATAACATT
326 CGAGTAAGTAACGGTAGAGGATATCCGAGTAAGTAACGGTAGAGGATATCCGTGAAGATAACATT
835292 AAAGGATAGCTGAGTAAGTAATGGTAGAGGATATCTAAGTAGGTAACGT
391 AAAGGATAGCTGAGTAAGTAATGGTAGAGGATATCTAAGTAGGTAACGT
835341 NATACGGGGGAATGGTTCTATTCAGCAATGTCATACCCCATCAGAGGTAAGAATATCAGCATCTT
1 -ATACGGGGGAATGGTTCTATTCAGCAATGTCATACCCCATCAGAGGTAAGAATATCAGCATCTT
835406 TGGCATCAGAAGATAAGACTTCTTTAAATTTTCTATTATTATTTTGTGATTATTGTATATTTTAG
65 TGGCATCAGAAGATAAGACTTCTTTAAATTTTCTATTATTATTTTGTGATTATTGTATATTTTAG
835471 CTTGCCCAATGTTACAAACAAGATTCGATGGTCCATGGATCTCAGATGGCAAGATGCAAACAAGC
130 CTTGCCCAATGTTACAAACAAGATTCGATGGTCCATGGATCTCAGATGGCAAGATGCAAACAAGC
835536 CTCCTGCGTTCCATGGTCTGAAAAACCACATTGTTTTCCGGACAGAAAAAGAGCCTAACCACGTG
195 CTCCTGCGTTCCATGGTCTGAAAAACCACATTGTTTTCCGGACAGAAAAAGAGCCTAACCACGTG
835601 ATTGACTGGGCGACCTTTGAGGCAGTAGACAGAACGAAAGTCCAGCTGAAAGCTGTGGAGGATCT
260 ATTGACTGGGCGACCTTTGAGGCAGTAGACAGAACGAAAGTCCAGCTGAAAGCTGTGGAGGATCT
835666 CCGAGTAAGTAACGGTAGAGGATATCCGAGTAAGTAACGGTAGAGGATATCCGTGAAGATAACAT
325 CCGAGTAAGTAACGGTAGAGGATATCCGAGTAAGTAACGGTAGAGGATATCCGTGAAGATAACAT
835731 TAAAGGATAGCTGAGTAAGTAATGGTAGAGGATATCTAAGTAGGTAACGT
390 TAAAGGATAGCTGAGTAAGTAATGGTAGAGGATATCTAAGTAGGTAACGT
835781 TAGAGGATAG
Statistics
Matches: 439, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
440 439 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (439 bp):
ATACGGGGGAATGGTTCTATTCAGCAATGTCATACCCCATCAGAGGTAAGAATATCAGCATCTTT
GGCATCAGAAGATAAGACTTCTTTAAATTTTCTATTATTATTTTGTGATTATTGTATATTTTAGC
TTGCCCAATGTTACAAACAAGATTCGATGGTCCATGGATCTCAGATGGCAAGATGCAAACAAGCC
TCCTGCGTTCCATGGTCTGAAAAACCACATTGTTTTCCGGACAGAAAAAGAGCCTAACCACGTGA
TTGACTGGGCGACCTTTGAGGCAGTAGACAGAACGAAAGTCCAGCTGAAAGCTGTGGAGGATCTC
CGAGTAAGTAACGGTAGAGGATATCCGAGTAAGTAACGGTAGAGGATATCCGTGAAGATAACATT
AAAGGATAGCTGAGTAAGTAATGGTAGAGGATATCTAAGTAGGTAACGT
Found at i:836275 original size:25 final size:25
Alignment explanation
Indices: 836240--836360 Score: 129
Period size: 25 Copynumber: 4.8 Consensus size: 25
836230 TTCTCAAATN
*
836240 CGTTAGAGGATATCAGAGTAGGTAA
1 CGTTAGAGGATATCAGAGTAAGTAA
* *
836265 TGTTAGAGGATATCCGAGTAAGTAA
1 CGTTAGAGGATATCAGAGTAAGTAA
** *
836290 CGGCAGAGGTTATCAGAGTAAGTAA
1 CGTTAGAGGATATCAGAGTAAGTAA
* * *
836315 CGGTAGAGGATATCCGAAT-AGATAA
1 CGTTAGAGGATATCAGAGTAAG-TAA
836340 CGTTAGAGGATATTC-GAGTAA
1 CGTTAGAGGATA-TCAGAGTAA
836361 ATAGTTGTAG
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
24 2 0.03
25 74 0.94
26 3 0.04
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.24
Consensus pattern (25 bp):
CGTTAGAGGATATCAGAGTAAGTAA
Found at i:836300 original size:312 final size:311
Alignment explanation
Indices: 835928--836550 Score: 1237
Period size: 312 Copynumber: 2.0 Consensus size: 311
835918 AAGTTGGTAA
835928 CGTTAGAGGATATCAGAGTAGGTAATGTTAGAGGATATCCGAGTAAGTAACGGCAGAGGTTATCA
1 CGTTAGAGGATATCAGAGTAGGTAATGTTAGAGGATATCCGAGTAAGTAACGGCAGAGGTTATCA
835993 GAGTAAGTAACGGTAGAGGATATCCGAATAGATAACGTTAGAGGATATTCGAGTAAATAGTTGTA
66 GAGTAAGTAACGGTAGAGGATATCCGAATAGATAACGTTAGAGGATATTCGAGTAAATAGTTGTA
836058 GATGAAATCCGTCAAGTAACGGTTAAGGCATTGATTACAGCTCTCTTTTGTAGGAGGATAAACCA
131 GATGAAATCCGTCAAGTAACGGTTAAGGCATTGATTACAGCTCTCTTTTGTAGGAGGATAAACCA
836123 GAGAAGGGATTCGACACGCTGGTTTCTGGCCCCTGGATGAAAATGTGGGAAATTAATAACATAAA
196 GAGAAGGGATTCGACACGCTGGTTTCTGGCCCCTGGATGAAAATGTGGGAAATTAATAACATAAA
836188 TAGACATGTCATCTTCTAACGAGTGATATTGAAAACTTTGTTTTCTCAAAT
261 TAGACATGTCATCTTCTAACGAGTGATATTGAAAACTTTGTTTTCTCAAAT
836239 NCGTTAGAGGATATCAGAGTAGGTAATGTTAGAGGATATCCGAGTAAGTAACGGCAGAGGTTATC
1 -CGTTAGAGGATATCAGAGTAGGTAATGTTAGAGGATATCCGAGTAAGTAACGGCAGAGGTTATC
836304 AGAGTAAGTAACGGTAGAGGATATCCGAATAGATAACGTTAGAGGATATTCGAGTAAATAGTTGT
65 AGAGTAAGTAACGGTAGAGGATATCCGAATAGATAACGTTAGAGGATATTCGAGTAAATAGTTGT
836369 AGATGAAATCCGTCAAGTAACGGTTAAGGCATTGATTACAGCTCTCTTTTGTAGGAGGATAAACC
130 AGATGAAATCCGTCAAGTAACGGTTAAGGCATTGATTACAGCTCTCTTTTGTAGGAGGATAAACC
836434 AGAGAAGGGATTCGACACGCTGGTTTCTGGCCCCTGGATGAAAATGTGGGAAATTAATAACATAA
195 AGAGAAGGGATTCGACACGCTGGTTTCTGGCCCCTGGATGAAAATGTGGGAAATTAATAACATAA
836499 ATAGACATGTCATCTTCTAACGAGTGATATTGAAAACTTTGTTTTCTCAAAT
260 ATAGACATGTCATCTTCTAACGAGTGATATTGAAAACTTTGTTTTCTCAAAT
836551 AGATTTACTA
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
312 311 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (311 bp):
CGTTAGAGGATATCAGAGTAGGTAATGTTAGAGGATATCCGAGTAAGTAACGGCAGAGGTTATCA
GAGTAAGTAACGGTAGAGGATATCCGAATAGATAACGTTAGAGGATATTCGAGTAAATAGTTGTA
GATGAAATCCGTCAAGTAACGGTTAAGGCATTGATTACAGCTCTCTTTTGTAGGAGGATAAACCA
GAGAAGGGATTCGACACGCTGGTTTCTGGCCCCTGGATGAAAATGTGGGAAATTAATAACATAAA
TAGACATGTCATCTTCTAACGAGTGATATTGAAAACTTTGTTTTCTCAAAT
Found at i:841678 original size:4 final size:4
Alignment explanation
Indices: 841669--841832 Score: 153
Period size: 4 Copynumber: 41.8 Consensus size: 4
841659 GTTAATGACA
841669 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT
* * * * * * *
841717 A-CAG ATGT ATCA ATCT ATC- ATTT ATCT A-CAG ATTT ATCT ATTT ATC-
1 ATC-T ATCT ATCT ATCT ATCT ATCT ATCT ATC-T ATCT ATCT ATCT ATCT
* * *
841763 ATCT ATCT ATCT GTCT A-CAG ATGT ATCT ATCT ATC- ATCT ATCT ATCT
1 ATCT ATCT ATCT ATCT ATC-T ATCT ATCT ATCT ATCT ATCT ATCT ATCT
841810 ATCT ATCAT ATCT ATC- ATCT ATC
1 ATCT ATC-T ATCT ATCT ATCT ATC
841833 CTGTTTTAAC
Statistics
Matches: 129, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
3 14 0.11
4 111 0.86
5 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.46
Consensus pattern (4 bp):
ATCT
Found at i:841763 original size:35 final size:35
Alignment explanation
Indices: 841724--841832 Score: 132
Period size: 35 Copynumber: 3.1 Consensus size: 35
841714 TCTACAGATG
* * *
841724 TATCAATCTATC-ATTTATCTACAGATTTATCTATT
1 TATC-ATCTATCTATCTATCTACAGATGTATCTATC
*
841759 TATCATCTATCTATCTGTCTACAGATGTATCTATC
1 TATCATCTATCTATCTATCTACAGATGTATCTATC
* *
841794 TATCATCTATCTATCTATCTATCATATCTATC-ATC
1 TATCATCTATCTATCTATCTA-CAGATGTATCTATC
841829 TATC
1 TATC
841833 CTGTTTTAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
34 7 0.11
35 50 0.77
36 8 0.12
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.46
Consensus pattern (35 bp):
TATCATCTATCTATCTATCTACAGATGTATCTATC
Found at i:841768 original size:11 final size:11
Alignment explanation
Indices: 841752--841832 Score: 57
Period size: 11 Copynumber: 7.6 Consensus size: 11
841742 CTACAGATTT
*
841752 ATCTATTTATC
1 ATCTATCTATC
841763 ATCTATCTATC
1 ATCTATCTATC
* *
841774 TGTCTA-C-A-G
1 -ATCTATCTATC
*
841783 ATGTATCTATC
1 ATCTATCTATC
841794 TATC-ATCTATC
1 -ATCTATCTATC
841805 TATCTATCTATC
1 -ATCTATCTATC
841817 A--TATCTATC
1 ATCTATCTATC
841826 ATCTATC
1 ATCTATC
841833 CTGTTTTAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
8 3 0.05
9 10 0.18
10 2 0.04
11 27 0.49
12 13 0.24
ACGTcount: A:0.27, C:0.23, G:0.04, T:0.46
Consensus pattern (11 bp):
ATCTATCTATC
Found at i:842649 original size:4 final size:4
Alignment explanation
Indices: 842640--842767 Score: 172
Period size: 4 Copynumber: 32.2 Consensus size: 4
842630 ACAAACTTTG
* *
842640 TATC TATC TATC TATC TA-C AGATG TATC TATC TATC -ATC TATC TATC
1 TATC TATC TATC TATC TATC -TATC TATC TATC TATC TATC TATC TATC
* * *
842687 TATC TATC TATC TATC TATC TATC TATC TATC TA-C AGATG TATC TATT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC -TATC TATC TATC
842735 TATC TATC TATC TATC TATC TATC TATC TATC T
1 TATC TATC TATC TATC TATC TATC TATC TATC T
842768 TTTACAATTA
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
3 5 0.05
4 104 0.95
ACGTcount: A:0.27, C:0.23, G:0.03, T:0.48
Consensus pattern (4 bp):
TATC
Found at i:855754 original size:277 final size:277
Alignment explanation
Indices: 855259--855801 Score: 962
Period size: 277 Copynumber: 2.0 Consensus size: 277
855249 TAACATTAAA
*
855259 AATTGTTACATGCGCGAAAATTATGCGCGTACGGTTCGCTGTAGAATTCACGTTATTCCTATATA
1 AATTGTTACATGCGCGAAAATCATGCGCGTACGGTTCGCTGTAGAATTCACGTTATTCCTATATA
*
855324 AAAGCAGTAAAATTTTCTTTAAAATTAAGACATTCAGTATAACAAAATAAAAAATGCCTGTTTGG
66 AAAGCAGTAAAATTTTCTTTAAAATTAAGACATTCAGTATAACAAAATAAAAAATGCCTGCTTGG
855389 GAGGATAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCTCCGCTTCGCGTCGGTTGA
131 GAGGATAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCTCCGCTTCGCGTCGGTTGA
* * *
855454 CAGTGGTTTTCTCGGGTTGTCAATTTCAACTGTTACCCTCCCAAACAGGCACTATTTATATACTA
196 CAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGGCACTATTTATATAATA
855519 TTACCCTCAGCATTACG
261 TTACCCTCAGCATTACG
* *
855536 AATTGTTACATGCGCGAAAATCATGCGCGTACGGTTCGCCT-TAGAATTCACTTTATTCCTATCT
1 AATTGTTACATGCGCGAAAATCATGCGCGTACGGTTCG-CTGTAGAATTCACGTTATTCCTATAT
** * *
855600 AAAAGCAGTAATGTTTTCTTTAAAATTAAGACATTCAGTATAACAAAATAAATAGTGCCTGCTTG
65 AAAAGCAGTAAAATTTTCTTTAAAATTAAGACATTCAGTATAACAAAATAAAAAATGCCTGCTTG
855665 GGAGGATAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCTCCGCTTCGCGTCGGTTG
130 GGAGGATAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCTCCGCTTCGCGTCGGTTG
855730 ACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGGCACTATTTATATAAT
195 ACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGGCACTATTTATATAAT
*
855795 GTTACCC
260 ATTACCC
855802 GTTGCTAAGT
Statistics
Matches: 253, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
277 251 0.99
278 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (277 bp):
AATTGTTACATGCGCGAAAATCATGCGCGTACGGTTCGCTGTAGAATTCACGTTATTCCTATATA
AAAGCAGTAAAATTTTCTTTAAAATTAAGACATTCAGTATAACAAAATAAAAAATGCCTGCTTGG
GAGGATAACAGTTGAAATTGACACCCCTCGAAAACCATTGTCAACCTCCGCTTCGCGTCGGTTGA
CAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGGCACTATTTATATAATA
TTACCCTCAGCATTACG
Found at i:855949 original size:36 final size:36
Alignment explanation
Indices: 855902--855976 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
855892 ATAACAAAAT
855902 ATTTTATTATACTTTCATGTTAAATACTGAAATCTG
1 ATTTTATTATACTTTCATGTTAAATACTGAAATCTG
855938 ATTTTATTATACTTTCATGTTAAATACTGAAATCTG
1 ATTTTATTATACTTTCATGTTAAATACTGAAATCTG
855974 ATT
1 ATT
855977 GGTTTAGACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (36 bp):
ATTTTATTATACTTTCATGTTAAATACTGAAATCTG
Found at i:858649 original size:21 final size:21
Alignment explanation
Indices: 858625--858671 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
858615 GTTTGAGTCA
858625 ACATGCAAGATAATTATGTCG
1 ACATGCAAGATAATTATGTCG
*
858646 ACATGCAAGATAATTATGTTG
1 ACATGCAAGATAATTATGTCG
858667 ACATG
1 ACATG
858672 GAAGTTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (21 bp):
ACATGCAAGATAATTATGTCG
Found at i:858966 original size:21 final size:21
Alignment explanation
Indices: 858783--858968 Score: 108
Period size: 21 Copynumber: 8.9 Consensus size: 21
858773 ATGCATCGTC
*
858783 TTATTTATGTTGACATGCGAG
1 TTATTTATGTCGACATGCGAG
* * * ** *
858804 ATAATTATGTAGACATGTAAC
1 TTATTTATGTCGACATGCGAG
* * * *
858825 ATATCTATGTCGACATTCGAC
1 TTATTTATGTCGACATGCGAG
* *
858846 TAATTTATGTCAACATGCGAG
1 TTATTTATGTCGACATGCGAG
* * *
858867 TTGA-TTATGT-TATTATGC-AA
1 TT-ATTTATGTCGA-CATGCGAG
* *
858887 TATATTCATGTTGACATGCGAG
1 T-TATTTATGTCGACATGCGAG
* *
858909 TTAATTATGTCGACATGAGAG
1 TTATTTATGTCGACATGCGAG
* * *
858930 TCATTTATGTTGACATGCGAC
1 TTATTTATGTCGACATGCGAG
*
858951 TTATTTATGTCAACATGC
1 TTATTTATGTCGACATGC
858969 AATATATCTA
Statistics
Matches: 121, Mismatches: 38, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
20 4 0.03
21 113 0.93
22 4 0.03
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (21 bp):
TTATTTATGTCGACATGCGAG
Found at i:858981 original size:42 final size:41
Alignment explanation
Indices: 858858--858981 Score: 117
Period size: 42 Copynumber: 3.0 Consensus size: 41
858848 ATTTATGTCA
* * * **
858858 ACATGCGAGTTGATTATGTTATTATGCAATATATTCATGTTG
1 ACATGCGACTTAATTATGTCAACATGCAATATATT-ATGTTG
* *
858900 ACATGCGAGTTAATTATGTCGACATG-AGAGTCAT-TTATGTTG
1 ACATGCGACTTAATTATGTCAACATGCA-A-T-ATATTATGTTG
*
858942 ACATGCGACTTATTTATGTCAACATGCAATATATCTATGT
1 ACATGCGACTTAATTATGTCAACATGCAATATAT-TATGT
858982 CATCATGCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
40 2 0.03
41 3 0.04
42 57 0.84
43 4 0.06
44 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (41 bp):
ACATGCGACTTAATTATGTCAACATGCAATATATTATGTTG
Found at i:858997 original size:21 final size:20
Alignment explanation
Indices: 858951--858998 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
858941 GACATGCGAC
*
858951 TTATTTATGTCAACATGCAA
1 TTATCTATGTCAACATGCAA
*
858971 TATATCTATGTCATCATGCAA
1 T-TATCTATGTCAACATGCAA
858992 GTTATCT
1 -TTATCT
858999 CACAAGTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (20 bp):
TTATCTATGTCAACATGCAA
Found at i:859043 original size:21 final size:21
Alignment explanation
Indices: 859019--859065 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
859009 CATAATCAAC
*
859019 TCGCAGGTTAACATAAATAAG
1 TCGCAGATTAACATAAATAAG
* *
859040 TCGCATATTGACATAAATAAG
1 TCGCAGATTAACATAAATAAG
859061 TCGCA
1 TCGCA
859066 TGTTGTCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (21 bp):
TCGCAGATTAACATAAATAAG
Found at i:859066 original size:21 final size:21
Alignment explanation
Indices: 859029--859076 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
859019 TCGCAGGTTA
859029 ACATAAATAAGTCGCATATTG
1 ACATAAATAAGTCGCATATTG
*
859050 ACATAAATAAGTCGCATGTTG
1 ACATAAATAAGTCGCATATTG
*
859071 TCATAA
1 ACATAA
859077 TTAGGTTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (21 bp):
ACATAAATAAGTCGCATATTG
Found at i:859239 original size:22 final size:21
Alignment explanation
Indices: 859168--859240 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
859158 AAGATTTTAA
* *
859168 CTTGCATGTAC-ACATAACTAA
1 CTTGCATGT-CGACATAATTAT
*
859189 CTTGCATGTCGATATAATTAT
1 CTTGCATGTCGACATAATTAT
*
859210 CTTGCATGTTGACATAATTCAT
1 CTTGCATGTCGACATAATT-AT
*
859232 GTTGCATGT
1 CTTGCATGT
859241 AGGTGGCAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
20 1 0.02
21 33 0.75
22 10 0.23
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (21 bp):
CTTGCATGTCGACATAATTAT
Found at i:860833 original size:14 final size:14
Alignment explanation
Indices: 860814--860842 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
860804 TATCCGTATT
860814 TAGTGGTTCCAATC
1 TAGTGGTTCCAATC
860828 TAGTGGTTCCAATC
1 TAGTGGTTCCAATC
860842 T
1 T
860843 GTGTGTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (14 bp):
TAGTGGTTCCAATC
Found at i:860849 original size:2 final size:2
Alignment explanation
Indices: 860842--860878 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
860832 GGTTCCAATC
860842 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
860879 CTCTCTCTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:864258 original size:56 final size:57
Alignment explanation
Indices: 864149--864264 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 57
864139 AAAGCGGAAG
864149 GAACATCAATGACAAATTGTTAGCTGTTAAACCTATAGCTGGGTGTATTGAACTGTT
1 GAACATCAATGACAAATTGTTAGCTGTTAAACCTATAGCTGGGTGTATTGAACTGTT
864206 GAACATCAATGACAAATTGTTAGCTG-TAAACCTATAGCTGGGTGTATTGAACTGTT
1 GAACATCAATGACAAATTGTTAGCTGTTAAACCTATAGCTGGGTGTATTGAACTGTT
864262 GAA
1 GAA
864265 AGAACCAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 33 0.56
57 26 0.44
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (57 bp):
GAACATCAATGACAAATTGTTAGCTGTTAAACCTATAGCTGGGTGTATTGAACTGTT
Found at i:868182 original size:150 final size:149
Alignment explanation
Indices: 867911--868210 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 149
867901 TTCATTTGAC
867911 CTTGATGTACTACAGTGTATTGTTTTAAGTATTTAACAACAGGATAATACACGTTTACATTCCCT
1 CTTGATGTACTACAGTGTATTGTTTTAAGTATTTAACAACAGGATAATACACGTTTACATTCCCT
867976 GGAACACAAATAACTGAATGATGAGTAGATACTTACAGGTTTGATGGCTAGCTCATCAGGATCAA
66 GGAACACAAATAACTGAATGATGAGTAGATACTTACAGGTTTGATGGCTAGCTCATCAGGATCAA
868041 AATGTCCATCCCACAAAGA
131 AATGTCCATCCCACAAAGA
868060 NCTTGATGTACTACAGTGTATTGTTTTAAGTATTTAACAACAGGATAATACACGTTTACATTCCC
1 -CTTGATGTACTACAGTGTATTGTTTTAAGTATTTAACAACAGGATAATACACGTTTACATTCCC
868125 TGGAACACAAATAACTGAATGATGAGTAGATACTTACAGGTTTGATGGCTAGCTCATCAGGATCA
65 TGGAACACAAATAACTGAATGATGAGTAGATACTTACAGGTTTGATGGCTAGCTCATCAGGATCA
868190 AAATGTCCATCCCACAAAGA
130 AAATGTCCATCCCACAAAGA
868210 C
1 C
868211 ACCGTCATAC
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
149 1 0.01
150 149 0.99
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (149 bp):
CTTGATGTACTACAGTGTATTGTTTTAAGTATTTAACAACAGGATAATACACGTTTACATTCCCT
GGAACACAAATAACTGAATGATGAGTAGATACTTACAGGTTTGATGGCTAGCTCATCAGGATCAA
AATGTCCATCCCACAAAGA
Found at i:868264 original size:36 final size:36
Alignment explanation
Indices: 868223--868470 Score: 464
Period size: 36 Copynumber: 6.9 Consensus size: 36
868213 CGTCATACTG
*
868223 GCATTGGGCTACAAAACATAAACTCTTACAATACTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
868259 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
*
868295 GCATTGGACTACAAAACATAAACTCTTACAATGCTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
868331 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
868367 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
868403 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
1 GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
868439 GCATTGGGCTACAAAAC--AAACTCTTACAATGC
1 GCATTGGGCTACAAAACATAAACTCTTACAATGC
868471 ACCATATTCA
Statistics
Matches: 209, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
34 15 0.07
36 194 0.93
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (36 bp):
GCATTGGGCTACAAAACATAAACTCTTACAATGCTT
Found at i:870634 original size:23 final size:23
Alignment explanation
Indices: 870608--870767 Score: 293
Period size: 23 Copynumber: 7.0 Consensus size: 23
870598 TGATACACCG
*
870608 ACTAGCTGCCTTACACACAGGGT
1 ACTAGCTGCCTTACCCACAGGGT
870631 ACTAGCTGCCTTACCCACAGGGT
1 ACTAGCTGCCTTACCCACAGGGT
*
870654 ACTAGCTGCCTTACCCACAGGGG
1 ACTAGCTGCCTTACCCACAGGGT
870677 ACTAGCTGCCTTACCCACAGGGT
1 ACTAGCTGCCTTACCCACAGGGT
870700 ACTAGCTGCCTTACCCACAGGGT
1 ACTAGCTGCCTTACCCACAGGGT
*
870723 ACTAGCTGCCTTACCCACAGGGG
1 ACTAGCTGCCTTACCCACAGGGT
870746 ACTAGCTGCCTTACCCACAGGG
1 ACTAGCTGCCTTACCCACAGGG
870768 ACCTCGTTGG
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 133 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (23 bp):
ACTAGCTGCCTTACCCACAGGGT
Found at i:871540 original size:57 final size:52
Alignment explanation
Indices: 871478--871603 Score: 125
Period size: 48 Copynumber: 2.4 Consensus size: 52
871468 CTTCATCTTC
*
871478 AGGTAGTTTAACCTCCATCTATACTGTAAATATAGGCACAGGTAAAGCCTACTCTCT
1 AGGTAGTTTAACCTCCATCTAT-CTGT--ACAT--GCACAGGTAAAGCCTACTCTCT
* * *
871535 AGGTAG-TTAA--ACC-TCTGTCTGTACCTGCACAGGTAAAGCCTACTCTCT
1 AGGTAGTTTAACCTCCATCTATCTGTACATGCACAGGTAAAGCCTACTCTCT
*
871583 AGGTAGTTTAAACCTTCATCT
1 AGGTAGTTT-AACCTCCATCT
871604 GTACCTGTTG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
48 28 0.48
49 2 0.03
50 4 0.07
52 5 0.09
53 7 0.12
54 2 0.03
56 4 0.07
57 6 0.10
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (52 bp):
AGGTAGTTTAACCTCCATCTATCTGTACATGCACAGGTAAAGCCTACTCTCT
Found at i:871576 original size:48 final size:49
Alignment explanation
Indices: 871513--871610 Score: 164
Period size: 48 Copynumber: 2.0 Consensus size: 49
871503 GTAAATATAG
*
871513 GCACAGGTAAAGCCTACTCTCTAGGTAG-TTAAACC-TCTGTCTGTACCT
1 GCACAGGTAAAGCCTACTCTCTAGGTAGTTTAAACCTTC-ATCTGTACCT
871561 GCACAGGTAAAGCCTACTCTCTAGGTAGTTTAAACCTTCATCTGTACCT
1 GCACAGGTAAAGCCTACTCTCTAGGTAGTTTAAACCTTCATCTGTACCT
871610 G
1 G
871611 TTGAGCTGGG
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
48 28 0.60
49 17 0.36
50 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
GCACAGGTAAAGCCTACTCTCTAGGTAGTTTAAACCTTCATCTGTACCT
Found at i:890091 original size:29 final size:29
Alignment explanation
Indices: 890058--890209 Score: 178
Period size: 29 Copynumber: 5.2 Consensus size: 29
890048 AGCTTTCCCC
* * *
890058 GACAAATAGCACACCAGTATGGTTTACCT
1 GACAAATAGCACACCTGTAAGATTTACCT
* *
890087 GACAAATATACCACACGTGTAAGATTTACCT
1 GAC-AA-ATAGCACACCTGTAAGATTTACCT
* * *
890118 GGCAAATAGCACACCTGTAAGGTTTACTT
1 GACAAATAGCACACCTGTAAGATTTACCT
* * * *
890147 GACAAGTAGCACACCTGTAAAATTAAACT
1 GACAAATAGCACACCTGTAAGATTTACCT
890176 GACAAATAGCACACCTGTAAGATTTACCT
1 GACAAATAGCACACCTGTAAGATTTACCT
890205 GACAA
1 GACAA
890210 CTGTATTTAC
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
29 75 0.75
30 4 0.04
31 21 0.21
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (29 bp):
GACAAATAGCACACCTGTAAGATTTACCT
Found at i:890219 original size:17 final size:17
Alignment explanation
Indices: 890197--890232 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
890187 CACCTGTAAG
890197 ATTTACCTGACAACTGT
1 ATTTACCTGACAACTGT
890214 ATTTACCTGACAACTGT
1 ATTTACCTGACAACTGT
890231 AT
1 AT
890233 CTTCAGGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (17 bp):
ATTTACCTGACAACTGT
Found at i:895385 original size:2 final size:2
Alignment explanation
Indices: 895371--895436 Score: 107
Period size: 2 Copynumber: 33.0 Consensus size: 2
895361 ACGGTATTTT
*
895371 TC TC TC ATC -C TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC
1 TC TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
895413 TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC
895437 AAAATGAACA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.02
2 57 0.95
3 2 0.03
ACGTcount: A:0.02, C:0.48, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:906529 original size:166 final size:166
Alignment explanation
Indices: 906243--906690 Score: 652
Period size: 166 Copynumber: 2.7 Consensus size: 166
906233 GGTATTTTTC
* * * * * *
906243 AAAAACCTTCTTCTCAAAAACTATTTGGCCTGAAAAGCTAAAACTT---GTGAGGAGGAATCCTC
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTAAAATG-GGA-GCATCCTC
* *
906305 AGGTAGTGAAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAAGAAGG
63 AGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAGAAGG
*
906370 GGATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
128 GGATCAAGTTTTACATAGGAATATATAGAGAAAATCTAT
* * *
906409 AAAAATCTTCTCCTCAAAAACTATTGGGCCAGAAAAGCTCAAATTAAAATGGGAGCATCCACAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGCATCCTCAGG
* * *
906474 TAGTGTAGATTCAAATTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATATGGGGA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAGAAGGGGA
906539 TCAAGTTTTACATAGGAATATATAGAGAAAATCTAT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTAT
* * * *
906575 AAAAATATTCTTCTCAAAAACAATTAGGCCAGAAAAGATCAAATTAAAATGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGCATCCTCAGG
*
906640 TAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTC-GGGGTAGGGTGGGG
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCC-CGGGGGTAGGGTGGGG
906691 GGGGGGGGGA
Statistics
Matches: 255, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
165 2 0.01
166 247 0.97
167 4 0.02
168 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (166 bp):
AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGCATCCTCAGG
TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAGAAGGGGA
TCAAGTTTTACATAGGAATATATAGAGAAAATCTAT
Found at i:908710 original size:43 final size:43
Alignment explanation
Indices: 908649--908740 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
908639 CAAATAAATC
* * *
908649 AAATAGATAGATGAAAAATATGTTTTATTTCAACTCTTCTAAA
1 AAATAAATAGATGAAAAATATATTTTATATCAACTCTTCTAAA
908692 AAATAAATAGATGAAAAATATATTTTATATCAACTCTTCTAAA
1 AAATAAATAGATGAAAAATATATTTTATATCAACTCTTCTAAA
908735 AAATAA
1 AAATAA
908741 GTTAACATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.35
Consensus pattern (43 bp):
AAATAAATAGATGAAAAATATATTTTATATCAACTCTTCTAAA
Found at i:913209 original size:26 final size:26
Alignment explanation
Indices: 913156--913716 Score: 761
Period size: 26 Copynumber: 21.1 Consensus size: 26
913146 AATTAATCTC
*
913156 TGTCAAATATCATGTGGTGTACACTAAA
1 TGTCAAATATCA--TAGTGTACACTAAA
*
913184 TGTCAAATATCATAATGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
*
913210 TGGCAGTACCAATATCATAGTGTACAC----
1 T----GT-CAAATATCATAGTGTACACTAAA
*
913237 TGTCAAATATCATAGTGTACACTTAA
1 TGTCAAATATCATAGTGTACACTAAA
* *
913263 TGTCAAATATAATAATGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913289 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913315 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
*
913341 TGTCAAATATCATAGTGTACACTAAC
1 TGTCAAATATCATAGTGTACACTAAA
* *
913367 TGTCAATACCGATGTCATAGTGTACACTTAA
1 TGTC-A-A---ATATCATAGTGTACACTAAA
*
913398 TGTCAAATATCATAGTGTACACTTAA
1 TGTCAAATATCATAGTGTACACTAAA
* *
913424 TATCAAATATCATAGTGTACACTAAC
1 TGTCAAATATCATAGTGTACACTAAA
* * *
913450 TGTCAAATATAATATTGTACACAAAA
1 TGTCAAATATCATAGTGTACACTAAA
913476 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
*
913502 TGTCAAATATTATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
*
913528 TGTCAAATATTATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
* *
913554 TGTCAAATATATATAATAATGTACACTAAA
1 TGTC--A-A-ATATCATAGTGTACACTAAA
913584 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
* *
913610 CGTCAAATATCAAAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913636 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913662 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913688 TGTCAAATATCATAGTGTACACTAAA
1 TGTCAAATATCATAGTGTACACTAAA
913714 TGT
1 TGT
913717 AATTAGTTTA
Statistics
Matches: 480, Mismatches: 35, Indels: 38
0.87 0.06 0.07
Matches are distributed among these distances:
22 18 0.04
23 2 0.00
26 377 0.79
27 3 0.01
28 15 0.03
29 2 0.00
30 25 0.05
31 38 0.08
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (26 bp):
TGTCAAATATCATAGTGTACACTAAA
Found at i:914482 original size:31 final size:31
Alignment explanation
Indices: 914447--915239 Score: 1002
Period size: 31 Copynumber: 25.5 Consensus size: 31
914437 TCAACTTAAC
* *
914447 ACAGGTAAAGCATGACAGGCATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
*
914478 ACAGGTAAAGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
914509 ACAGGTAAAGCATGACATGTATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * * *
914540 ACAGGAAAAGCATGACATATATCAATCTATA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
914571 ACAGGTAAAGCATGACATATATCAACCTATA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * *
914602 ACAGGTAAAGCATGACAGGCATCAACGTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
*
914633 ACAGGTAAAGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
914664 ACAGGTAAAGCATGACATGTATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
*
914695 ACAGGAAAAGCATGACATGTATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
914726 ACAGGAAAAGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
*
914757 ACAGGTAAAGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
914788 ACAGGGAAAGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * **
914819 ACAGGTAAAGCATGACAGGCATCAAGGTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
914850 ACAGGTAAAGCATGACATATATCAATCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
914881 ACAGGT-AAGGATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * *
914911 ACAGGTAAAGCATGACAGGTGTCACCCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
914942 ACAGGTAAAGCAT-A-ATGGGTATCAACCTACA
1 ACAGGTAAAGCATGACAT--GTATCAACCTACA
***
914973 ACAGGTAAAGCATGATGGGTATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * *
915004 ACAGGTAAGGCATTACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * *
915035 ACAGGTAAAACATGACAGGTATCACCCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
915066 ACAGGTAAAGCATGACATGTATCAATCTTCA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* *
915097 ACAGGTAAGGCATGACATATATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * * *
915128 ACAGGTTAAGCATAACAGGTGTCAAACTACATGTACA
1 ACAGGTAAAGCATGACATGTATC-AAC--C---TACA
* *
915165 ACAGATAAAGCATG--ATGTGTCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
* * *
915194 ACAGGAAAAGCATGAAAGGTATCAACCTACA
1 ACAGGTAAAGCATGACATGTATCAACCTACA
*
915225 ACAGATAAAGCATGA
1 ACAGGTAAAGCATGA
915240 TACACAAGGT
Statistics
Matches: 665, Mismatches: 84, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
29 17 0.03
30 29 0.04
31 589 0.89
32 5 0.01
34 4 0.01
35 6 0.01
37 15 0.02
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (31 bp):
ACAGGTAAAGCATGACATGTATCAACCTACA
Found at i:916939 original size:62 final size:62
Alignment explanation
Indices: 916873--917059 Score: 338
Period size: 62 Copynumber: 3.0 Consensus size: 62
916863 ATTTTACAAT
916873 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
1 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
* *
916935 GTGTTGGTATAGGATGGCAGCATAAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
1 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
* *
916997 GTGTTGTTAGAGGATGGTAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
1 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
917059 G
1 G
917060 ATGGTAAGCA
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 119 1.00
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (62 bp):
GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAA
Found at i:917063 original size:26 final size:26
Alignment explanation
Indices: 917032--917085 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
917022 GATATGCTGC
917032 AGATGGTAAGCATAGAGAATTAATAA
1 AGATGGTAAGCATAGAGAATTAATAA
*
917058 AGATGGTAAGCATAGAGATTTAATAA
1 AGATGGTAAGCATAGAGAATTAATAA
917084 AG
1 AG
917086 TGTTGGTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (26 bp):
AGATGGTAAGCATAGAGAATTAATAA
Found at i:917074 original size:88 final size:88
Alignment explanation
Indices: 916970--917147 Score: 329
Period size: 88 Copynumber: 2.0 Consensus size: 88
916960 GATATGCTGC
*
916970 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGTTAGAGGATGGTAGCATTAGATATGCTGCAGA
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGA
*
917035 TGGTAAGCATAGAGAATTAATAA
66 TGGTAAGCATAGAGAATGAATAA
*
917058 AGATGGTAAGCATAGAGATTTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGA
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGA
917123 TGGTAAGCATAGAGAATGAATAA
66 TGGTAAGCATAGAGAATGAATAA
917146 AG
1 AG
917148 TGTTGTTAGA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (88 bp):
AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGA
TGGTAAGCATAGAGAATGAATAA
Found at i:917126 original size:62 final size:62
Alignment explanation
Indices: 917058--917267 Score: 357
Period size: 62 Copynumber: 3.4 Consensus size: 62
917048 GAATTAATAA
*
917058 AGATGGTAAGCATAGAGATTTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
* * *
917120 AGATGGTAAGCATAGAGAATGAATAAAGTGTTGTTAGAGGATGGCAGCATTAGATATGCTGC
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
*
917182 AGATGGTAAGCATAGAGATTTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
* *
917244 AGACGGTAAGCATAGGGAATTAAT
1 AGATGGTAAGCATAGAGAATTAAT
917268 GTGTACATAG
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 137 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.27
Consensus pattern (62 bp):
AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGC
Found at i:917179 original size:150 final size:150
Alignment explanation
Indices: 916908--917209 Score: 541
Period size: 150 Copynumber: 2.0 Consensus size: 150
916898 GATATGCTGC
*
916908 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTATAGGATGGCAGCATAAGATATGCTGCAGA
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGCAGCATAAGATATGCTGCAGA
* *
916973 TGGTAAGCATAGAGAATTAATAAAGTGTTGTTAGAGGATGGTAGCATTAGATATGCTGCAGATGG
66 TGGTAAGCATAGAGAATGAATAAAGTGTTGTTAGAGGATGGCAGCATTAGATATGCTGCAGATGG
917038 TAAGCATAGAGAATTAATAA
131 TAAGCATAGAGAATTAATAA
* * *
917058 AGATGGTAAGCATAGAGATTTAATAAAGTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGA
1 AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGCAGCATAAGATATGCTGCAGA
917123 TGGTAAGCATAGAGAATGAATAAAGTGTTGTTAGAGGATGGCAGCATTAGATATGCTGCAGATGG
66 TGGTAAGCATAGAGAATGAATAAAGTGTTGTTAGAGGATGGCAGCATTAGATATGCTGCAGATGG
*
917188 TAAGCATAGAGATTTAATAA
131 TAAGCATAGAGAATTAATAA
917208 AG
1 AG
917210 TGTTGGTAGA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 145 1.00
ACGTcount: A:0.38, C:0.07, G:0.29, T:0.27
Consensus pattern (150 bp):
AGATGGTAAGCATAGAGAATTAATAAAGTGTTGGTAGAGGATGGCAGCATAAGATATGCTGCAGA
TGGTAAGCATAGAGAATGAATAAAGTGTTGTTAGAGGATGGCAGCATTAGATATGCTGCAGATGG
TAAGCATAGAGAATTAATAA
Found at i:917240 original size:212 final size:212
Alignment explanation
Indices: 916873--917267 Score: 709
Period size: 212 Copynumber: 1.9 Consensus size: 212
916863 ATTTTACAAT
*
916873 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGTG
1 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATGAATAAAGTG
*
916938 TTGGTATAGGATGGCAGCATAAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGTGTTG
66 TTGGTAGAGGATGGCAGCATAAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGTGTTG
* *
917003 TTAGAGGATGGTAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGATGGTAAG
131 GTAGAGGATGGTAGCATTAGATATGCTGCAGACGGTAAGCATAGAGAATTAATAAAGATGGTAAG
917068 CATAGAGATTTAATAAA
196 CATAGAGATTTAATAAA
*
917085 GTGTTGGTAGAGGATGGTAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATGAATAAAGTG
1 GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATGAATAAAGTG
* * *
917150 TTGTTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGATTTAATAAAGTGTTG
66 TTGGTAGAGGATGGCAGCATAAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGTGTTG
*
917215 GTAGAGGATGGTAGCATTAGATATGCTGCAGACGGTAAGCATAGGGAATTAAT
131 GTAGAGGATGGTAGCATTAGATATGCTGCAGACGGTAAGCATAGAGAATTAAT
917268 GTGTACATAG
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
212 174 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.27
Consensus pattern (212 bp):
GTGTTGGTAGAGGATGGCAGCATTAGATATGCTGCAGATGGTAAGCATAGAGAATGAATAAAGTG
TTGGTAGAGGATGGCAGCATAAGATATGCTGCAGATGGTAAGCATAGAGAATTAATAAAGTGTTG
GTAGAGGATGGTAGCATTAGATATGCTGCAGACGGTAAGCATAGAGAATTAATAAAGATGGTAAG
CATAGAGATTTAATAAA
Found at i:922866 original size:11 final size:10
Alignment explanation
Indices: 922844--922888 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
922834 TATTAGTCAG
922844 TTTTT-GTTT
1 TTTTTGGTTT
*
922853 TTTTGGGTTT
1 TTTTTGGTTT
922863 TTTTTGGTTT
1 TTTTTGGTTT
*
922873 TTTTGTTGTTT
1 TTTT-TGGTTT
922884 TTTTT
1 TTTTT
922889 TTTGCAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 4 0.13
10 18 0.58
11 9 0.29
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (10 bp):
TTTTTGGTTT
Found at i:922872 original size:20 final size:20
Alignment explanation
Indices: 922844--922888 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
922834 TATTAGTCAG
922844 TTTTTGTTTTTTTG-GGTTT
1 TTTTTGTTTTTTTGTGGTTT
*
922863 TTTTTGGTTTTTTTGTTGTTT
1 TTTTT-GTTTTTTTGTGGTTT
922884 TTTTT
1 TTTTT
922889 TTTGCAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 9 0.39
21 9 0.39
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (20 bp):
TTTTTGTTTTTTTGTGGTTT
Found at i:926390 original size:2 final size:2
Alignment explanation
Indices: 926383--926419 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
926373 TTAATAATTT
926383 AG AG AG AG AG AG A- AG AG AG AG AG AG AG -G AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
926420 CTTTAAAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:926401 original size:11 final size:12
Alignment explanation
Indices: 926383--926419 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
926373 TTAATAATTT
926383 AGAGAGAGAGAG
1 AGAGAGAGAGAG
926395 A-AGAGAGAGAG
1 AGAGAGAGAGAG
926406 AGAG-GAGAGAG
1 AGAGAGAGAGAG
926417 AGA
1 AGA
926420 CTTTAAAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 21 0.88
12 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (12 bp):
AGAGAGAGAGAG
Found at i:926401 original size:13 final size:13
Alignment explanation
Indices: 926383--926419 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
926373 TTAATAATTT
926383 AGAGAGAGAGAGA
1 AGAGAGAGAGAGA
926396 AGAGAGAGAGAGA
1 AGAGAGAGAGAGA
*
926409 GGAGAGAGAGA
1 AGAGAGAGAGA
926420 CTTTAAAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (13 bp):
AGAGAGAGAGAGA
Found at i:926403 original size:15 final size:15
Alignment explanation
Indices: 926383--926419 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
926373 TTAATAATTT
926383 AGAGAGAGAGAGAAG
1 AGAGAGAGAGAGAAG
*
926398 AGAGAGAGAGAGGAG
1 AGAGAGAGAGAGAAG
926413 AGAGAGA
1 AGAGAGA
926420 CTTTAAAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (15 bp):
AGAGAGAGAGAGAAG
Found at i:928678 original size:14 final size:14
Alignment explanation
Indices: 928659--928686 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
928649 AGTAGCAGCC
928659 AAAGTTCAAGACAT
1 AAAGTTCAAGACAT
928673 AAAGTTCAAGACAT
1 AAAGTTCAAGACAT
928687 GATGTTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (14 bp):
AAAGTTCAAGACAT
Found at i:936463 original size:37 final size:37
Alignment explanation
Indices: 936413--936854 Score: 568
Period size: 37 Copynumber: 11.8 Consensus size: 37
936403 AGTAAACACG
936413 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
936450 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
936487 AGGGCAGAAACAGACACGAGGGC-AAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
* *
936523 AGGGCAGAAACAGACACGAGGGCAAAAATAGACATCG
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
*
936560 AGGACAGAAACAGACACGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
936597 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
* * * * *
936634 AGGGCAGAAACAGGCACGANAAATAGAGGACAGAAGTAAAC-ACG
1 AGGGCAGAAACAGACACG------AG-GG-CAAAAATAGACAACA
936678 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
**** * *
936715 AGGGCAGCTGTAGGCACGAGGGC-AAAATAGACAACG
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
* * *
936751 AGGACAGAAATAGACATGAGGGCAAAAATAGACAACA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
* *
936788 AGGGCAGAAACAGACACGAGAGC-AAAATAGACAACG
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
* * * *
936824 AGGACAGAAATAGACAACGAGGACAGAAATA
1 AGGGCAGAAACAGAC-ACGAGGGCAAAAATA
936855 CATACGAGGA
Statistics
Matches: 353, Mismatches: 39, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
36 98 0.28
37 217 0.61
38 7 0.02
43 2 0.01
44 21 0.06
45 8 0.02
ACGTcount: A:0.50, C:0.18, G:0.28, T:0.04
Consensus pattern (37 bp):
AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
Found at i:936606 original size:110 final size:110
Alignment explanation
Indices: 936413--936854 Score: 573
Period size: 110 Copynumber: 3.9 Consensus size: 110
936403 AGTAAACACG
936413 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAA
936478 TAGACAACAAGGGCAGAAACAGACACGAGGGCAAAATAGACAACA
66 TAGACAACAAGGGCAGAAACAGACACGAGGGCAAAATAGACAACA
* * *
936523 AGGGCAGAAACAGACACGAGGGCAAAAATAGACATCGAGGACAGAAACAGACACGAGGGCAAAAA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAA
936588 TAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAATAGACAACA
66 TAGACAACAAGGGCAGAAACAGACACGAGGGC-AAAATAGACAACA
* * * * *
936634 AGGGCAGAAACAGGCACGANAAATAGAGGACAGAAGTAAAC-ACGAGGGCAGAAACAGACACGAG
1 AGGGCAGAAACAGACACG------AG-GG-CAAAAATAGACAACAAGGGCAGAAACAGACACGAG
**** * *
936698 GGCAAAAATAGACAACAAGGGCAGCTGTAGGCACGAGGGCAAAATAGACAACG
58 GGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAATAGACAACA
* * * *
936751 AGGACAGAAATAGACATGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGAGC-AAAA
1 AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAA
* * * *
936815 TAGACAACGAGGACAGAAATAGACAACGAGGACAGAAATA
66 TAGACAACAAGGGCAGAAACAGAC-ACGAGGGCA-AAATA
936855 CATACGAGGA
Statistics
Matches: 289, Mismatches: 31, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
109 30 0.10
110 128 0.44
111 37 0.13
117 28 0.10
118 58 0.20
119 8 0.03
ACGTcount: A:0.50, C:0.18, G:0.28, T:0.04
Consensus pattern (110 bp):
AGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGGGCAAAAA
TAGACAACAAGGGCAGAAACAGACACGAGGGCAAAATAGACAACA
Found at i:936794 original size:73 final size:73
Alignment explanation
Indices: 936675--936854 Score: 252
Period size: 73 Copynumber: 2.5 Consensus size: 73
936665 AGAAGTAAAC
* * **** * *
936675 ACGAGGGCAGAAACAGACACGAGGGCAAAAATAGACAACAAGGGCAGCTGTAGGCACGAGGGCAA
1 ACGAGGACAGAAATAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGAGCAA
936740 AATAGACA
66 AATAGACA
*
936748 ACGAGGACAGAAATAGACATGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGAGCAA
1 ACGAGGACAGAAATAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGAGCAA
936813 AATAGACA
66 AATAGACA
* *
936821 ACGAGGACAGAAATAGACAACGAGGACAGAAATA
1 ACGAGGACAGAAATAGAC-ACGAGGGCAAAAATA
936855 CATACGAGGA
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 82 0.87
74 12 0.13
ACGTcount: A:0.49, C:0.17, G:0.28, T:0.06
Consensus pattern (73 bp):
ACGAGGACAGAAATAGACACGAGGGCAAAAATAGACAACAAGGGCAGAAACAGACACGAGAGCAA
AATAGACA
Found at i:940785 original size:2 final size:2
Alignment explanation
Indices: 940778--940820 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
940768 TCTTTAAATG
940778 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
940820 G
1 G
940821 TAAACCGCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:941152 original size:13 final size:13
Alignment explanation
Indices: 941134--941158 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
941124 GAATCCGAGG
941134 AGGGGCGCGGGGT
1 AGGGGCGCGGGGT
941147 AGGGGCGCGGGG
1 AGGGGCGCGGGG
941159 NNNNNNNNNN
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.72, T:0.04
Consensus pattern (13 bp):
AGGGGCGCGGGGT
Found at i:943958 original size:20 final size:20
Alignment explanation
Indices: 943933--943977 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
943923 TTACAGAACA
943933 AAAGCACGGGTACCTACCAC
1 AAAGCACGGGTACCTACCAC
*
943953 AAAGCACGGGTACCTACCCC
1 AAAGCACGGGTACCTACCAC
943973 AAAGC
1 AAAGC
943978 TTTCTTTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.36, G:0.20, T:0.09
Consensus pattern (20 bp):
AAAGCACGGGTACCTACCAC
Found at i:947075 original size:37 final size:37
Alignment explanation
Indices: 947034--947110 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
947024 GTACTTAGTG
947034 AACAGTCATCTAGATAAATAAACCTAGTATCTATAGA
1 AACAGTCATCTAGATAAATAAACCTAGTATCTATAGA
*
947071 AACAGTCATTTAGATAAATAAACCTAGTATCTATAGA
1 AACAGTCATCTAGATAAATAAACCTAGTATCTATAGA
947108 AAC
1 AAC
947111 TAATACACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (37 bp):
AACAGTCATCTAGATAAATAAACCTAGTATCTATAGA
Found at i:948397 original size:2 final size:2
Alignment explanation
Indices: 948390--948427 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
948380 ATGACAACAA
948390 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
948428 GTTAGTTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:969613 original size:22 final size:22
Alignment explanation
Indices: 969585--969654 Score: 131
Period size: 22 Copynumber: 3.2 Consensus size: 22
969575 ACTTCCGCCC
969585 ACCCACGGCCCGGTAAACACCT
1 ACCCACGGCCCGGTAAACACCT
*
969607 ACCCACGGCCCGGTAAACACCC
1 ACCCACGGCCCGGTAAACACCT
969629 ACCCACGGCCCGGTAAACACCT
1 ACCCACGGCCCGGTAAACACCT
969651 ACCC
1 ACCC
969655 CCCTTTGTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.27, C:0.49, G:0.17, T:0.07
Consensus pattern (22 bp):
ACCCACGGCCCGGTAAACACCT
Found at i:973051 original size:42 final size:42
Alignment explanation
Indices: 972992--973155 Score: 260
Period size: 42 Copynumber: 4.0 Consensus size: 42
972982 CGCAGGGGTG
972992 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
1 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
973034 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
1 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
* * **
973076 TTTCTGTAGAGAATTGAGTGTAAGGTGT--GTGTAAGGTATT
1 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
* *
973116 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTA
1 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTA
973156 TCAGTGTAAG
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 36 0.32
42 78 0.68
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.34
Consensus pattern (42 bp):
TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
Found at i:973134 original size:82 final size:83
Alignment explanation
Indices: 972992--973155 Score: 258
Period size: 82 Copynumber: 2.0 Consensus size: 83
972982 CGCAGGGGTG
*
972992 TTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGAAA
1 TTTCTGTAGAGAATTGAGTGAAAGGTAT-AGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAA
973057 GGTATCAGTGTAAGGTACC
65 GGTATCAGTGTAAGGTACC
* * ** *
973076 TTTCTGTAGAGAATTGAGTGTAAGGTGT-GTGTAAGGTATTTTTCTGTAGAGAACTGAGTGTAAG
1 TTTCTGTAGAGAATTGAGTGAAAGGTATAGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAG
973140 GTATCAGTGTAAGGTA
66 GTATCAGTGTAAGGTA
973156 TCAGTGTAAG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
82 48 0.65
84 26 0.35
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.34
Consensus pattern (83 bp):
TTTCTGTAGAGAATTGAGTGAAAGGTATAGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAG
GTATCAGTGTAAGGTACC
Found at i:973150 original size:13 final size:13
Alignment explanation
Indices: 973132--973168 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
973122 TAGAGAACTG
973132 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973145 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973158 AGTGTAAGGTA
1 AGTGTAAGGTA
973169 CCTTTCTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.30
Consensus pattern (13 bp):
AGTGTAAGGTATC
Found at i:973175 original size:55 final size:53
Alignment explanation
Indices: 973092--973360 Score: 208
Period size: 55 Copynumber: 5.4 Consensus size: 53
973082 TAGAGAATTG
* ** *
973092 AGTGTAAGGTGTGTGTAAGGTATTTTTCTGTAGAGAACTGAGTGTAAGGTATC
1 AGTGTAAGGTATGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
*
973145 AGTGTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGAAAGGTATC
1 AGTGTAAGGTAT--GTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
* *
973200 ----------A-GTGTAAGGTACCTTTCTGTAGAGAATTGAGTGTAAGG--T-
1 AGTGTAAGGTATGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
* *
973239 -GTGT---GTA-----A-GGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATC
1 AGTGTAAGGTATGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
* *
973282 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATC
1 AGTGTAAGGTAT--GTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
*
973337 AGGGTAAGGTATCAGTGTAAGGTA
1 AGTGTAAGGTAT--GTGTAAGGTA
973361 TCAGTGTAAG
Statistics
Matches: 182, Mismatches: 11, Indels: 44
0.77 0.05 0.19
Matches are distributed among these distances:
40 30 0.16
41 1 0.01
42 37 0.20
44 4 0.02
45 2 0.01
47 3 0.02
53 11 0.06
54 1 0.01
55 93 0.51
ACGTcount: A:0.29, C:0.07, G:0.31, T:0.33
Consensus pattern (53 bp):
AGTGTAAGGTATGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGAAAGGTATC
Found at i:973196 original size:42 final size:42
Alignment explanation
Indices: 973145--973951 Score: 819
Period size: 42 Copynumber: 19.3 Consensus size: 42
973135 GTAAGGTATC
*
973145 AGTGTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
* *
973187 AGTGAAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
* *
973229 AGTGTAAGGTGT--GTGTAAGGTATCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
** * *
973269 AGTGTAAGGTATCAGTGTAAGGTATC--AGTGTA-AGGTATCTT
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA-GAAT-TG
** * * * *** * *
973310 TCTGT-AGAGAATTGAGTGAAAGGTATC--AGGGTA-AG-GTATC
1 AGTGTAAG-GTA-TCAGTGTAAGGTATCTTTCTGTAGAGAAT-TG
973350 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973392 AGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
* * *
973434 AGGGTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973476 AGTGTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
* * *
973518 AGGGTAAAGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973560 AGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973602 AGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
* * * *
973644 AGGGTAAGGTATCAGTGTAAGGTATC--ACTG-AGTGTAAGGTATC
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAG-AA--T-TG
** * *** * *
973687 AGTGTAAGGTATCTTTCTGT-AGAG-AACTGAGTGTA-AG-GTATC
1 AGTGTAAGGTATC--AGTGTAAG-GTATCTTTCTGTAGAGAAT-TG
** * *** * * *
973729 AGTGTAAGGTATCTTTCTGT-AGAGAAT-TGAGTG-AAAG-GTATC
1 AGTGTAAGGTATC--AGTGTAAG-GTATCTTTCTGTAGAGAAT-TG
* *
973771 AGTGTTAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973813 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973855 AGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
*
973897 AGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
973939 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973952 TTTCTGTAGA
Statistics
Matches: 673, Mismatches: 65, Indels: 54
0.85 0.08 0.07
Matches are distributed among these distances:
39 17 0.03
40 63 0.09
41 18 0.03
42 547 0.81
43 15 0.02
44 4 0.01
45 4 0.01
46 4 0.01
47 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (42 bp):
AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTG
Found at i:973287 original size:13 final size:13
Alignment explanation
Indices: 973269--973375 Score: 117
Period size: 13 Copynumber: 8.0 Consensus size: 13
973259 TAGAGAACTG
973269 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973282 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973295 AGTGTAAGGTATC
1 AGTGTAAGGTATC
** * *
973308 TTTCTGT-AGAGAATTG
1 --AGTGTAAG-GTA-TC
*
973324 AGTGAAAGGTATC
1 AGTGTAAGGTATC
*
973337 AGGGTAAGGTATC
1 AGTGTAAGGTATC
973350 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973363 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973376 TTTCTGTAGA
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
13 63 0.82
14 6 0.08
15 7 0.09
16 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (13 bp):
AGTGTAAGGTATC
Found at i:973361 original size:55 final size:55
Alignment explanation
Indices: 973241--973457 Score: 253
Period size: 55 Copynumber: 3.9 Consensus size: 55
973231 TGTAAGGTGT
* *
973241 GTGTAAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCA
1 GTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGGGTAAGGTATCA
*
973296 GTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGGGTAAGGTATCA
1 GTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGGGTAAGGTATCA
** * *** * *
973351 GTGTAAGGTATC--AGTGTA-AGGTATCTTTCTGT-AGAGAATTGAGGGTAAGGTATCA
1 GTGTAAGGTATCTTTCTGTAGA-GAAT-TGAGTGTAAG-GTA-TCAGGGTAAGGTATCA
* *
973406 GTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTA
1 GTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGGGTAAGGTA
973458 CCTTTCTGTA
Statistics
Matches: 132, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 9 0.07
54 5 0.04
55 102 0.77
56 5 0.04
57 9 0.07
58 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.31, T:0.32
Consensus pattern (55 bp):
GTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGGGTAAGGTATCA
Found at i:973401 original size:68 final size:68
Alignment explanation
Indices: 973272--973417 Score: 265
Period size: 68 Copynumber: 2.1 Consensus size: 68
973262 AGAACTGAGT
*
973272 GTAAGGTATCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATC
1 GTAAGGTATCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGAAAGGTATC
973337 AGG
66 AGG
*
973340 GTAAGGTATCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGAAAGGTATC
*
973405 AGT
66 AGG
973408 GTAAGGTATC
1 GTAAGGTATC
973418 TTTCTGTAGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 75 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.32
Consensus pattern (68 bp):
GTAAGGTATCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGAAAGGTATC
AGG
Found at i:973511 original size:126 final size:126
Alignment explanation
Indices: 973148--974033 Score: 1043
Period size: 126 Copynumber: 7.2 Consensus size: 126
973138 AGGTATCAGT
* * *
973148 GTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGTGTAAGGTACC
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
* * * *
973213 TTTCTGTAGAGAATTGAGTGTAAGGTGT--GTGTAAGGTATCTTTCTGTAGAGAACTGAGT
66 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
** * *** * * *
973272 GTAAGGTATCAGTGTAAGGTATC--AGTGTA-AGGTATCTTTCTGT-AGAGAATTGAGTGAAAGG
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA-GAAT-TGAGTGTAAG-GTA-TCAGTGTAAGG
*** * *
973333 TATC--AGGGTA-AGGTA-TCAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAG
62 TATCTTTCTGTAGA-GAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAG
973394 G
126 G
* *
973395 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTACC
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
*
973460 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGG
66 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
* * *
973521 GTAAAGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
* *
973586 TTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
66 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
*
973647 GTAAGGTATCAGTGTAAGGTA----TC--------ACTGAGTGTAAGGTATCAGTGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
973700 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAA
66 TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGA--G---
973765 G
126 G
*
973766 GTATCAGTGTTAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGT
1 G--T-A-----AGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGT
*
973831 AAGGTATCTTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATT
58 AAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATT
973896 GAGG
123 GAGG
973900 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAG-A---A-T-T---G----AGTGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
* *
973952 TTTCTGTAGAGAATTGAAG-GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGT
66 TTTCTGTAGAGAACTG-AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
974013 GTAAGGTATCAGTGTAAGGTA
1 GTAAGGTATCAGTGTAAGGTA
974034 NNNNNNNNNN
Statistics
Matches: 670, Mismatches: 51, Indels: 93
0.82 0.06 0.11
Matches are distributed among these distances:
113 90 0.13
114 87 0.13
116 1 0.00
117 1 0.00
119 2 0.00
120 1 0.00
121 16 0.02
122 18 0.03
123 69 0.10
124 39 0.06
125 15 0.02
126 218 0.33
127 18 0.03
131 3 0.00
132 1 0.00
134 2 0.00
137 1 0.00
139 88 0.13
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (126 bp):
GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGTGTAAGGTATC
TTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGG
Found at i:973666 original size:55 final size:55
Alignment explanation
Indices: 973605--973838 Score: 260
Period size: 55 Copynumber: 4.2 Consensus size: 55
973595 AGAATTGAGG
*
973605 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGT
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGT
** * *** * *
973660 GTAAGGTATCACTGAGTGTAAGGTATC--AGTGTA-AGGTATCTTTCTGT-AGAGAACTGAGT
1 GTAAGGTAT--C--AGTGTAAGGTATCTTTCTGTAGA-GAAT-TGAGTGTAAG-GTA-TCAGT
*
973719 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGT
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGT
* *
973774 GTTAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCAGT
1 GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGT
973829 GTAAGGTATC
1 GTAAGGTATC
973839 TTTCTGTAGA
Statistics
Matches: 145, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
55 87 0.60
56 6 0.04
57 20 0.14
58 6 0.04
59 26 0.18
ACGTcount: A:0.29, C:0.09, G:0.29, T:0.33
Consensus pattern (55 bp):
GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGT
Found at i:973683 original size:30 final size:30
Alignment explanation
Indices: 973642--973699 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
973632 TGTAGAGAAT
973642 TGAGGGTAAGGTATCAGTGTAAGGTATCAC
1 TGAGGGTAAGGTATCAGTGTAAGGTATCAC
*
973672 TGAGTGTAAGGTATCAGTGTAAGGTATC
1 TGAGGGTAAGGTATCAGTGTAAGGTATC
973700 TTTCTGTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (30 bp):
TGAGGGTAAGGTATCAGTGTAAGGTATCAC
Found at i:973766 original size:29 final size:28
Alignment explanation
Indices: 973729--973825 Score: 108
Period size: 29 Copynumber: 3.5 Consensus size: 28
973719 GTAAGGTATC
973729 AGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCTTTCTGTAGAGAA-TG
* ** * * *
973758 AGTGAAAGGTATCAGTGT-TAG-GTATC
1 AGTGTAAGGTATCTTTCTGTAGAGAATG
973784 AGTGTAAGGTATCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCTTTCTGTAGAGAA-TG
973813 AGTGTAAGGTATC
1 AGTGTAAGGTATC
973826 AGTGTAAGGT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
26 15 0.28
27 5 0.09
28 5 0.09
29 28 0.53
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
AGTGTAAGGTATCTTTCTGTAGAGAATG
Found at i:973913 original size:253 final size:251
Alignment explanation
Indices: 973521--974033 Score: 852
Period size: 253 Copynumber: 2.0 Consensus size: 251
973511 AGAATTGAGG
* *
973521 GTAAAGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATC
*
973586 TTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAA
66 TTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAA
*
973651 GGTATCAGTGTAAGGTATC-ACTG-AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAAC
131 GGTATCAGTGTAAGGTATCTACTGTAGAG-AA--T-TCAGTGTAAGGTATCTTTCTGTAGAGAAC
973714 TG-AGTGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGT
192 TGAAG-GTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGT
* * *
973774 GTTAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCAGTGTAAGGTATC
1 GTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATC
973839 TTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAA
66 TTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAA
* * *
973904 GGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCTTTCTGTAGAGAATTGA
131 GGTATCAGTGTAAGGTATC-TACTGTAGAGAATTCAGTGTAAGGTATCTTTCTGTAGAGAACTGA
*
973969 AGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATCAGT
195 AGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGT
974026 GTAAGGTA
1 GTAAGGTA
974034 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 12, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
252 90 0.37
253 146 0.60
255 5 0.02
256 3 0.01
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (251 bp):
GTAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATC
TTTCTGTAGAGAACTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAA
GGTATCAGTGTAAGGTATCTACTGTAGAGAATTCAGTGTAAGGTATCTTTCTGTAGAGAACTGAA
GGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGAAAGGTATCAGT
Found at i:973952 original size:29 final size:30
Alignment explanation
Indices: 973910--973980 Score: 128
Period size: 29 Copynumber: 2.4 Consensus size: 30
973900 GTAAGGTATC
973910 AGTGTAAGGTATCTTTCTGTAGAGAATTG-
1 AGTGTAAGGTATCTTTCTGTAGAGAATTGA
973939 AGTGTAAGGTATCTTTCTGTAGAGAATTGA
1 AGTGTAAGGTATCTTTCTGTAGAGAATTGA
973969 AG-GTAAGGTATC
1 AGTGTAAGGTATC
973981 AGTGTAAGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 39 0.95
30 2 0.05
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (30 bp):
AGTGTAAGGTATCTTTCTGTAGAGAATTGA
Found at i:973952 original size:71 final size:71
Alignment explanation
Indices: 973868--974022 Score: 301
Period size: 71 Copynumber: 2.2 Consensus size: 71
973858 GTAAGGTATC
*
973868 AGTGTAAGGTATCTTTCTGTAGAGAATTGAGGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA
1 AGTGTAAGGTATCTTTCTGTAGAGAATTGAAGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA
973933 GAATTG
66 GAATTG
973939 AGTGTAAGGTATCTTTCTGTAGAGAATTGAAGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA
1 AGTGTAAGGTATCTTTCTGTAGAGAATTGAAGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA
974004 GAATTG
66 GAATTG
974010 AGTGTAAGGTATC
1 AGTGTAAGGTATC
974023 AGTGTAAGGT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 83 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.35
Consensus pattern (71 bp):
AGTGTAAGGTATCTTTCTGTAGAGAATTGAAGGTAAGGTATCAGTGTAAGGTATCTTTCTGTAGA
GAATTG
Found at i:973985 original size:42 final size:42
Alignment explanation
Indices: 973939--974033 Score: 174
Period size: 42 Copynumber: 2.3 Consensus size: 42
973929 TAGAGAATTG
973939 AGTGTAAGGTATCTTTCTGTAGAGAATTGAAG-GTAAGGTATC
1 AGTGTAAGGTATCTTTCTGTAGAGAATTG-AGTGTAAGGTATC
973981 AGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATC
1 AGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATC
974023 AGTGTAAGGTA
1 AGTGTAAGGTA
974034 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 2 0.04
42 50 0.96
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (42 bp):
AGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGTAAGGTATC
Found at i:977311 original size:13 final size:13
Alignment explanation
Indices: 977293--977318 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
977283 TAGAGAACTG
977293 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977306 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977319 TTTCTGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
AGTGTAAGGTATC
Found at i:977315 original size:42 final size:42
Alignment explanation
Indices: 977256--977599 Score: 589
Period size: 42 Copynumber: 8.2 Consensus size: 42
977246 NNNNNNNNNN
* *
977256 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGT
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
*
977298 AAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGA
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
* *
977340 AAGGTATCCGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGT
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
* *
977382 AAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAACTGAGTGA
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
* *
977424 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAACTGAGTGT
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
*
977466 AAGGTATCAGTGTAAGGTATCTTTCTGTAGAGAATTGAGTGA
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
977508 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
*
977550 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGT
1 AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
977592 AAGGTATC
1 AAGGTATC
977600 TTTCTGTAGA
Statistics
Matches: 285, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 285 1.00
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (42 bp):
AAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGA
Found at i:977395 original size:13 final size:13
Alignment explanation
Indices: 977377--977402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
977367 TAGAGAATTG
977377 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977390 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977403 TTTCTGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
AGTGTAAGGTATC
Found at i:977479 original size:13 final size:13
Alignment explanation
Indices: 977461--977486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
977451 TAGAGAACTG
977461 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977474 AGTGTAAGGTATC
1 AGTGTAAGGTATC
977487 TTTCTGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
AGTGTAAGGTATC
Found at i:977602 original size:29 final size:29
Alignment explanation
Indices: 977556--977628 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
977546 GTGAAAGGTA
*
977556 TCAGTGTAAGGTACCTTTCTGTAGAGAAT
1 TCAGTGTAAGGTATCTTTCTGTAGAGAAT
*
977585 TGAGTGTAAGGTATCTTTCTGTAGAGAAT
1 TCAGTGTAAGGTATCTTTCTGTAGAGAAT
*
977614 TCAGGGTAAGGTATC
1 TCAGTGTAAGGTATC
977629 AGTGTAAGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (29 bp):
TCAGTGTAAGGTATCTTTCTGTAGAGAAT
Found at i:977635 original size:13 final size:13
Alignment explanation
Indices: 977614--977667 Score: 90
Period size: 13 Copynumber: 4.2 Consensus size: 13
977604 TGTAGAGAAT
*
977614 TCAGGGTAAGGTA
1 TCAGTGTAAGGTA
977627 TCAGTGTAAGGTA
1 TCAGTGTAAGGTA
977640 TCAGTGTAAGGTA
1 TCAGTGTAAGGTA
*
977653 TCAGTGCAAGGTA
1 TCAGTGTAAGGTA
977666 TC
1 TC
977668 TTTCTGTAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (13 bp):
TCAGTGTAAGGTA
Found at i:977692 original size:29 final size:29
Alignment explanation
Indices: 977655--977725 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
977645 GTAAGGTATC
*
977655 AGTGCAAGGTATCTTTCTGTAGAGAACTG
1 AGTGTAAGGTATCTTTCTGTAGAGAACTG
*
977684 AGTGTAAGGTATCTTTCTGTAGAGAATTG
1 AGTGTAAGGTATCTTTCTGTAGAGAACTG
*
977713 AGTGTTAGGTATC
1 AGTGTAAGGTATC
977726 AGTGTATGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.27, C:0.10, G:0.28, T:0.35
Consensus pattern (29 bp):
AGTGTAAGGTATCTTTCTGTAGAGAACTG
Found at i:977723 original size:97 final size:97
Alignment explanation
Indices: 977545--977731 Score: 311
Period size: 97 Copynumber: 1.9 Consensus size: 97
977535 TAGAGAATTG
* *
977545 AGTGAAAGGTATCAGTGTAAGGTACCTTTCTGTAGAGAATTGAGTGTAAGGTATCTTTCTGTAGA
1 AGTGAAAGGTATCAGTGCAAGGTACCTTTCTGTAGAGAACTGAGTGTAAGGTATCTTTCTGTAGA
977610 GAATTCAGGGTAAGGTATCAGTGTAAGGTATC
66 GAATTCAGGGTAAGGTATCAGTGTAAGGTATC
* *
977642 AGTGTAAGGTATCAGTGCAAGGTATCTTTCTGTAGAGAACTGAGTGTAAGGTATCTTTCTGTAGA
1 AGTGAAAGGTATCAGTGCAAGGTACCTTTCTGTAGAGAACTGAGTGTAAGGTATCTTTCTGTAGA
* * *
977707 GAATTGAGTGTTAGGTATCAGTGTA
66 GAATTCAGGGTAAGGTATCAGTGTA
977732 TGGCATCTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 83 1.00
ACGTcount: A:0.29, C:0.09, G:0.29, T:0.33
Consensus pattern (97 bp):
AGTGAAAGGTATCAGTGCAAGGTACCTTTCTGTAGAGAACTGAGTGTAAGGTATCTTTCTGTAGA
GAATTCAGGGTAAGGTATCAGTGTAAGGTATC
Found at i:979288 original size:11 final size:11
Alignment explanation
Indices: 979272--979298 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
979262 ACTTAACCTA
979272 ATCAAAGAGAT
1 ATCAAAGAGAT
979283 ATCAAAGAGAT
1 ATCAAAGAGAT
979294 ATCAA
1 ATCAA
979299 TTTATTGGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.11, G:0.15, T:0.19
Consensus pattern (11 bp):
ATCAAAGAGAT
Found at i:989627 original size:33 final size:33
Alignment explanation
Indices: 989582--989785 Score: 363
Period size: 33 Copynumber: 6.2 Consensus size: 33
989572 CACGAGTAGA
* *
989582 TGTCATTCAGACCGGCCCATCCATGGCCCAGGA
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
*
989615 TGCCATTCAGACCGGCCCATCCACGGCCCAGGG
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
989648 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
989681 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
989714 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
* *
989747 TGTCATTCAGACCGGCCAATCCATGGCCCAGGG
1 TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
989780 TGTCAT
1 TGTCAT
989786 ATGTACTCCA
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 165 1.00
ACGTcount: A:0.19, C:0.38, G:0.26, T:0.17
Consensus pattern (33 bp):
TGTCATTCAGACCGGCCCATCCACGGCCCAGGG
Found at i:995755 original size:21 final size:21
Alignment explanation
Indices: 995731--995774 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
995721 CAAAGAGGAA
995731 AAGTATATATAATAAAAATAT
1 AAGTATATATAATAAAAATAT
*
995752 AAGTATATATAATAAACATAT
1 AAGTATATATAATAAAAATAT
995773 AA
1 AA
995775 AATACTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (21 bp):
AAGTATATATAATAAAAATAT
Found at i:1008296 original size:22 final size:22
Alignment explanation
Indices: 1008268--1008337 Score: 140
Period size: 22 Copynumber: 3.2 Consensus size: 22
1008258 AAGAAACCCT
1008268 GTAAAATAGTGAGCTTATACCG
1 GTAAAATAGTGAGCTTATACCG
1008290 GTAAAATAGTGAGCTTATACCG
1 GTAAAATAGTGAGCTTATACCG
1008312 GTAAAATAGTGAGCTTATACCG
1 GTAAAATAGTGAGCTTATACCG
1008334 GTAA
1 GTAA
1008338 TTCTGTCTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (22 bp):
GTAAAATAGTGAGCTTATACCG
Found at i:1017246 original size:20 final size:20
Alignment explanation
Indices: 1017221--1017272 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1017211 ACTTTATTTC
*
1017221 CCAGTATTTCCCGGGAATAA
1 CCAGTATTTCCCGGAAATAA
* *
1017241 CCAGTAATTCCCGGAAATTA
1 CCAGTATTTCCCGGAAATAA
1017261 CCAGTATTTCCC
1 CCAGTATTTCCC
1017273 ACCGTCCTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (20 bp):
CCAGTATTTCCCGGAAATAA
Found at i:1020863 original size:11 final size:11
Alignment explanation
Indices: 1020843--1020901 Score: 104
Period size: 11 Copynumber: 5.5 Consensus size: 11
1020833 GTTAAAGGTN
1020843 AATG-AACCAC
1 AATGAAACCAC
1020853 AATGAAACCAC
1 AATGAAACCAC
1020864 AATGAAACCAC
1 AATGAAACCAC
1020875 AATG-AACCAC
1 AATGAAACCAC
1020885 AATGAAACCAC
1 AATGAAACCAC
1020896 AATGAA
1 AATGAA
1020902 CCTAAATTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
10 14 0.30
11 33 0.70
ACGTcount: A:0.54, C:0.25, G:0.10, T:0.10
Consensus pattern (11 bp):
AATGAAACCAC
Found at i:1020902 original size:21 final size:21
Alignment explanation
Indices: 1020843--1020903 Score: 106
Period size: 21 Copynumber: 2.9 Consensus size: 21
1020833 GTTAAAGGTN
1020843 AATG-AACCACAATGAAACCAC
1 AATGAAACCACAATG-AACCAC
1020864 AATGAAACCACAATGAACCAC
1 AATGAAACCACAATGAACCAC
1020885 AATGAAACCACAATGAACC
1 AATGAAACCACAATGAACC
1020904 TAAATTAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 29 0.74
22 10 0.26
ACGTcount: A:0.52, C:0.28, G:0.10, T:0.10
Consensus pattern (21 bp):
AATGAAACCACAATGAACCAC
Found at i:1023722 original size:2 final size:2
Alignment explanation
Indices: 1023717--1023802 Score: 156
Period size: 2 Copynumber: 43.5 Consensus size: 2
1023707 CTGTAATTTA
1023717 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
1023759 AG AG AG AG AG AG AG -G GG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1023800 AG A
1 AG A
1023803 TCCCCAATTA
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
1 1 0.01
2 81 0.99
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1025769 original size:10 final size:10
Alignment explanation
Indices: 1025741--1025825 Score: 125
Period size: 10 Copynumber: 8.3 Consensus size: 10
1025731 CCTTAATAAA
*
1025741 GTTCATTGTA
1 GTTCATTGTG
1025751 GTATCATTGTG
1 GT-TCATTGTG
1025762 GTTCATTGTG
1 GTTCATTGTG
1025772 GTTTCATTGTG
1 G-TTCATTGTG
*
1025783 GTTCATTGCG
1 GTTCATTGTG
1025793 GTTCATTGTG
1 GTTCATTGTG
*
1025803 GTTCATTGCG
1 GTTCATTGTG
1025813 GTTCATTGTG
1 GTTCATTGTG
1025823 GTT
1 GTT
1025826 AAAAGACGCG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
10 49 0.72
11 19 0.28
ACGTcount: A:0.12, C:0.12, G:0.28, T:0.48
Consensus pattern (10 bp):
GTTCATTGTG
Found at i:1033297 original size:12 final size:11
Alignment explanation
Indices: 1033280--1033318 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 11
1033270 TCCACCGCTG
1033280 TACCTACCTGT
1 TACCTACCTGT
1033291 ATACCTACCTGT
1 -TACCTACCTGT
1033303 GTACCTACCTGT
1 -TACCTACCTGT
1033315 TACC
1 TACC
1033319 CCCCCCCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.21, C:0.36, G:0.10, T:0.33
Consensus pattern (11 bp):
TACCTACCTGT
Found at i:1033491 original size:21 final size:21
Alignment explanation
Indices: 1033467--1033538 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
1033457 GATTATTTTA
*
1033467 ATTATTAAATTGTTTTGTGAG
1 ATTATCAAATTGTTTTGTGAG
* * *
1033488 ATTATCAAA-CGATTTATTTTA-
1 ATTATCAAATTG-TTT-TGTGAG
1033509 ATTATCAAATTGTTTTGTGAG
1 ATTATCAAATTGTTTTGTGAG
1033530 ATTATCAAA
1 ATTATCAAA
1033539 CGAATTAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
20 4 0.10
21 32 0.80
22 4 0.10
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (21 bp):
ATTATCAAATTGTTTTGTGAG
Found at i:1033511 original size:42 final size:42
Alignment explanation
Indices: 1033459--1033541 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
1033449 TTATCCTGGA
*
1033459 TTATTTTAATTATTAAATTGTTTTGTGAGATTATCAAACGAT
1 TTATTTTAATTATCAAATTGTTTTGTGAGATTATCAAACGAT
1033501 TTATTTTAATTATCAAATTGTTTTGTGAGATTATCAAACGA
1 TTATTTTAATTATCAAATTGTTTTGTGAGATTATCAAACGA
1033542 ATTAAACAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (42 bp):
TTATTTTAATTATCAAATTGTTTTGTGAGATTATCAAACGAT
Found at i:1039219 original size:14 final size:14
Alignment explanation
Indices: 1039202--1039235 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
1039192 AGTCGATTTT
1039202 AACAGTTCCAATCC
1 AACAGTTCCAATCC
*
1039216 AACAGTTCCAGTCC
1 AACAGTTCCAATCC
1039230 AACAGT
1 AACAGT
1039236 CAAAATGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.32, G:0.12, T:0.21
Consensus pattern (14 bp):
AACAGTTCCAATCC
Found at i:1039684 original size:14 final size:16
Alignment explanation
Indices: 1039648--1039684 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
1039638 GCTAAAATCC
1039648 ATAATTAATACAAAAT
1 ATAATTAATACAAAAT
1039664 ATGAATTAA-A-AAAAT
1 AT-AATTAATACAAAAT
1039679 ATAATT
1 ATAATT
1039685 TGGGTGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.20
15 7 0.35
16 3 0.15
17 6 0.30
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAATTAATACAAAAT
Found at i:1047169 original size:12 final size:12
Alignment explanation
Indices: 1047151--1047225 Score: 114
Period size: 12 Copynumber: 6.2 Consensus size: 12
1047141 GGAATCACCT
*
1047151 TGTCCGTCTGTC
1 TGTCCGTCCGTC
*
1047163 CGTCCGTCCGTC
1 TGTCCGTCCGTC
*
1047175 TGTCCGTCCATC
1 TGTCCGTCCGTC
1047187 TGTCCGTCCGTC
1 TGTCCGTCCGTC
1047199 TGTCCGTCCGTC
1 TGTCCGTCCGTC
*
1047211 TGTCCGTCTGTC
1 TGTCCGTCCGTC
1047223 TGT
1 TGT
1047226 GCAATCGTGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 57 1.00
ACGTcount: A:0.01, C:0.39, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTCCGTCCGTC
Found at i:1047225 original size:4 final size:4
Alignment explanation
Indices: 1047152--1047218 Score: 80
Period size: 4 Copynumber: 16.8 Consensus size: 4
1047142 GAATCACCTT
* * * * *
1047152 GTCC GTCT GTCC GTCC GTCC GTCT GTCC GTCC ATCT GTCC GTCC GTCT
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC
*
1047200 GTCC GTCC GTCT GTCC GTC
1 GTCC GTCC GTCC GTCC GTC
1047219 TGTCTGTGCA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.01, C:0.42, G:0.24, T:0.33
Consensus pattern (4 bp):
GTCC
Found at i:1047495 original size:146 final size:146
Alignment explanation
Indices: 1047230--1047886 Score: 889
Period size: 146 Copynumber: 4.5 Consensus size: 146
1047220 GTCTGTGCAA
*
1047230 TCGTGTCCGGTCCATATCTTTCTTATAGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
1 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
* *
1047295 TTATGACCTAAGGATGTGTCATGACCTTGACCCAATGTCATTTGGGCAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACTGGC
1047360 AGAAAAAATACAAAAT
131 AGAAAAAATACAAAAT
* *
1047376 CCGTGTCCAGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
1 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
*
1047441 TTATGACCTAAGGGTGTGTCATGACCTTGATCCAAGGTCATTTGGGCAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACTGGC
1047506 AGAAAAAATACAAAAT
131 AGAAAAAATACAAAAT
* * ** *
1047522 TTGTGTCCGGTCCATATCTATCTTATGGAGAAACATTGCCAGTCCTTTA-TTCACACAAAGATTG
1 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTC-TTACTTCACACAAAGATTG
* * * * * **
1047586 CTTATGACCTAAGGTTGTGCCATGACTTTTATCCAAGGTCATTTGGGCAAGGTCAAGGTCGTTAG
65 CTTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACT-G
* *
1047651 G-A-AAAATAGTGCAAAAT
129 GCAGAAAA-AATACAAAAT
* * *
1047668 TCGTGTCCAGT-CATTATCTTTCTTATGGAGAAGCATT-GAATGTTC-TAGCTTCACACAAATAT
1 TCGTGTCCGGTCCA-TATCTTTCTTATGGAGAAACATTGGAA-GTTCTTA-CTTCACACAAAGAT
* * * *
1047730 TGCTTAGGACCAAAAGGTGTGTCCTGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACT
63 TGCTTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACT
* *
1047795 GGCAGAAAAAGTGCAAAAT
128 GGCAGAAAAAATACAAAAT
* * * *
1047814 TTGTGTCCGGT-CATTATTTTTCTTATGGAGAAGCATT-GAATGTTCTTACTTCACACAAATATT
1 TCGTGTCCGGTCCA-TATCTTTCTTATGGAGAAACATTGGAA-GTTCTTACTTCACACAAAGATT
1047877 GCTTATGACC
64 GCTTATGACC
1047887 AACAGTTTAA
Statistics
Matches: 457, Mismatches: 44, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
144 2 0.00
145 9 0.02
146 435 0.95
147 11 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (146 bp):
TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACTGGC
AGAAAAAATACAAAAT
Found at i:1058471 original size:48 final size:48
Alignment explanation
Indices: 1058400--1058556 Score: 314
Period size: 48 Copynumber: 3.3 Consensus size: 48
1058390 GATACGGAGA
1058400 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1058448 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1058496 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1 TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
1058544 TAAACAATGTATA
1 TAAACAATGTATA
1058557 ATGAGGTTAG
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 109 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (48 bp):
TAAACAATGTATACACAATGTATACATAAAAAGACAATAAACAACACG
Found at i:1064186 original size:18 final size:18
Alignment explanation
Indices: 1064163--1064197 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1064153 CTACATGTAT
1064163 ATAGCTTGAATAAGCTAA
1 ATAGCTTGAATAAGCTAA
* *
1064181 ATAGCTTTATTAAGCTA
1 ATAGCTTGAATAAGCTA
1064198 TTCAGAGTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (18 bp):
ATAGCTTGAATAAGCTAA
Found at i:1064763 original size:18 final size:18
Alignment explanation
Indices: 1064739--1064780 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1064729 GCTATTTTGA
1064739 ATAGCTTTATAAAGCTAT
1 ATAGCTTTATAAAGCTAT
* * *
1064757 GTAGCTTTTTCAAGCTAT
1 ATAGCTTTATAAAGCTAT
1064775 ATAGCT
1 ATAGCT
1064781 AAATTAAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (18 bp):
ATAGCTTTATAAAGCTAT
Found at i:1066315 original size:53 final size:53
Alignment explanation
Indices: 1066252--1066519 Score: 437
Period size: 53 Copynumber: 5.1 Consensus size: 53
1066242 CCATTCCAGA
*** *
1066252 AGGCCATTGTAAGTACTCCCAAACACAAACAATCCTCTTAATGATAGAACAGG
1 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
* *
1066305 AGGCCATTGTAAGTACTCCCTCCCACATAGAATCCTCATAATGATAGAACAGG
1 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
* * *
1066358 AGGCCATTGTAAGTACTTCCTCCCACAAACAATCCTCATCATGAAAGAACAGG
1 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
1066411 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
1 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
* *
1066464 AGGCCATTGTAAGTATTCCCTCCCACAAAGAATCCTCATAATGATAGAACAGG
1 AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
1066517 AGG
1 AGG
1066520 TCAAGGCCTG
Statistics
Matches: 199, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 199 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (53 bp):
AGGCCATTGTAAGTACTCCCTCCCACAAACAATCCTCATAATGATAGAACAGG
Found at i:1067665 original size:73 final size:73
Alignment explanation
Indices: 1067573--1067765 Score: 332
Period size: 73 Copynumber: 2.6 Consensus size: 73
1067563 ATAAAATCCT
* ** *
1067573 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAATTGTAAACTTTTCTTTCTACTAGATGTG
1 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTTTTCTACCTACTAGATGTC
*
1067638 TGTTATGC
66 TATTATGC
*
1067646 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTTTTCTACCTACTAGATTTC
1 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTTTTCTACCTACTAGATGTC
1067711 TATTATGC
66 TATTATGC
1067719 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTT
1 AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTT
1067766 GTTTGAAGCA
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 114 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (73 bp):
AAACTGTAAACTTGTTTGAAGCAGTGTGACATTTGAACTGTAAACTTTTCTACCTACTAGATGTC
TATTATGC
Done.