Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1009
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1861391
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.29
Warning! 223269 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:1041392 original size:21 final size:21
Alignment explanation
Indices: 1041209--1041407 Score: 86
Period size: 21 Copynumber: 9.5 Consensus size: 21
1041199 AATGATAGTT
*
1041209 TCGCGAAAGTTAT-GCTTTATA
1 TCGCGAAAGTT-TCGCGTTATA
* *
1041230 TCGCGAAAGTTACGCGTTTTA
1 TCGCGAAAGTTTCGCGTTATA
* * *** *
1041251 TAGCAAAAGTAAAGTGTTCAT-
1 TCGCGAAAGTTTCGCGTT-ATA
* * **
1041272 TCGCAAAACTAACGCGTTATA
1 TCGCGAAAGTTTCGCGTTATA
* * *
1041293 GCGCGAAAATTTTGCGTT-TA
1 TCGCGAAAGTTTCGCGTTATA
*
1041313 TTCGCGAAAGTTACGCGTTATA
1 -TCGCGAAAGTTTCGCGTTATA
1041335 TCGC-AAACGTTTCGCGTT-TA
1 TCGCGAAA-GTTTCGCGTTATA
* ****
1041355 TTCGCAAAACAAACGCGTTATA
1 -TCGCGAAAGTTTCGCGTTATA
* *
1041377 TCGCGAAATTTTCGCGTTTATT
1 TCGCGAAAGTTTCGCG-TTATA
1041399 TC-CGAAAGT
1 TCGCGAAAGT
1041408 AACGCGTTTA
Statistics
Matches: 133, Mismatches: 35, Indels: 20
0.71 0.19 0.11
Matches are distributed among these distances:
20 9 0.07
21 110 0.83
22 14 0.11
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (21 bp):
TCGCGAAAGTTTCGCGTTATA
Found at i:1056946 original size:2 final size:2
Alignment explanation
Indices: 1056941--1056976 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1056931 CCCCCCCCCC
1056941 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1056977 GTTCATAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1063519 original size:21 final size:21
Alignment explanation
Indices: 1063493--1063564 Score: 144
Period size: 21 Copynumber: 3.4 Consensus size: 21
1063483 TTAGTTGATA
1063493 TATAACGGTCTGGGTGAGGGG
1 TATAACGGTCTGGGTGAGGGG
1063514 TATAACGGTCTGGGTGAGGGG
1 TATAACGGTCTGGGTGAGGGG
1063535 TATAACGGTCTGGGTGAGGGG
1 TATAACGGTCTGGGTGAGGGG
1063556 TATAACGGT
1 TATAACGGT
1063565 GAAATAGCAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.21, C:0.10, G:0.44, T:0.25
Consensus pattern (21 bp):
TATAACGGTCTGGGTGAGGGG
Found at i:1070239 original size:168 final size:168
Alignment explanation
Indices: 1069959--1070391 Score: 735
Period size: 168 Copynumber: 2.6 Consensus size: 168
1069949 NNNNNNNNNN
* * *
1069959 ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACACCTA--ACAAAGGGGTCAAGAATTTTACA
1 ATATGGCCATATTGGCCCCACCCTAGAGCCTG-A-ACCTATGACCAAGGGGTCATGAATTTCACA
* * *
1070022 ATTTTGGTAGAGGGCTTCATGGACATTATAACCAGGCATTTATTTTTAAACAAATATATATGGGA
64 ATTTTGGTAGAGGGCCTCATGGACATCATAACCAGGCATTTAGTTTTAAACAAATATATATGGGA
*
1070087 GTAAAGAACAAGATTTTCTAAGATTTAATACATTTTTACT
129 GTAAAGAACAAGATTTTCTAAGATTTAATACATTTTAACT
*
1070127 ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCTATGACCCAGGGGTCATGAATTTCACAAT
1 ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCTATGACCAAGGGGTCATGAATTTCACAAT
1070192 TTTGGTAGAGGGCCTCATGGACATCATAACCAGGCATTTAGTTTTAAACAAATATATATGGGAGT
66 TTTGGTAGAGGGCCTCATGGACATCATAACCAGGCATTTAGTTTTAAACAAATATATATGGGAGT
*
1070257 AGAGAACAAGATTTTCTAAGATTTAATACATTTTAACT
131 AAAGAACAAGATTTTCTAAGATTTAATACATTTTAACT
* *
1070295 ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCCATGACCAAGGGGTCATGAATTTCGCAAT
1 ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCTATGACCAAGGGGTCATGAATTTCACAAT
1070360 TTTGGTAGAGGGCCTCATGGACATCATAACCA
66 TTTGGTAGAGGGCCTCATGGACATCATAACCA
1070392 TACATTCAGT
Statistics
Matches: 251, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
166 5 0.02
167 1 0.00
168 245 0.98
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (168 bp):
ATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCTATGACCAAGGGGTCATGAATTTCACAAT
TTTGGTAGAGGGCCTCATGGACATCATAACCAGGCATTTAGTTTTAAACAAATATATATGGGAGT
AAAGAACAAGATTTTCTAAGATTTAATACATTTTAACT
Found at i:1071824 original size:36 final size:36
Alignment explanation
Indices: 1071748--1071824 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
1071738 TACATACATG
* * * * *
1071748 TATCTTGGACGTGTACCCATTGTCTACATATATACT
1 TATCTTGAACCTGTACCCATGGTCAACATATATACA
1071784 TATCTTGAACCTGTACCCATGGTCAACATAGTA-ACA
1 TATCTTGAACCTGTACCCATGGTCAACATA-TATACA
1071820 TATCT
1 TATCT
1071825 CTCTGACTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 33 0.94
37 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (36 bp):
TATCTTGAACCTGTACCCATGGTCAACATATATACA
Found at i:1072022 original size:36 final size:36
Alignment explanation
Indices: 1071829--1072313 Score: 424
Period size: 36 Copynumber: 13.4 Consensus size: 36
1071819 ATATCTCTCT
* * * **
1071829 GACTTGAATCCATCGTCTACATATGAACATCTCTTG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* * * * *
1071865 GATTTGAGCCCACT-GCCTACATATTAACACCTCTTCA
1 GACTTGAACCCA-TGGCCTACATATTTACATCTCTT-G
* * *
1071902 GACTTGAACCCATGGTCTATATATTCACA-CATCTTG
1 GACTTGAACCCATGGCCTACATATTTACATC-TCTTG
* * * * *
1071938 AATTTGAACCCATGGACTTCAT-TCTTACAACTCTCTTT
1 GACTTGAACCCATGGCCTACATAT-TTAC-A-TCTCTTG
* * * ** *
1071976 TACTTAAACCCATGGTCTACATATGAATATCTCTTG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
*
1072012 GACTTGAACCCATGGTCTACATATTTACATCTCTTG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* ** * ** *
1072048 GACTTGCACCTTTGGTCTATGTA-TTACATCTCTGG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* * * *
1072083 GA-TATGAAGACAATGACCTACAT-TTTAACATCTCTAG
1 GACT-TGAA-CCCATGGCCTACATATTT-ACATCTCTTG
* *
1072120 GACTTGAACCCATGGCCTCCATATTTACATCTCTAG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* *
1072156 GACTTGAACCCATGGCCTCCATATTTACATCTCTAG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* *
1072192 GACTTGAACCCATGGCCTCCATATTTACATCTCTAG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* *
1072228 GACTTGAACCCATGGCCTCCATATTTACATCTCTAG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
* * *
1072264 GACTTGAACCCATGACCTCCATATTTACATCTCTAG
1 GACTTGAACCCATGGCCTACATATTTACATCTCTTG
1072300 GACTTGAACCCATG
1 GACTTGAACCCATG
1072314 TTCTGTCCGT
Statistics
Matches: 380, Mismatches: 54, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
34 1 0.00
35 17 0.04
36 290 0.76
37 47 0.12
38 23 0.06
39 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (36 bp):
GACTTGAACCCATGGCCTACATATTTACATCTCTTG
Found at i:1074267 original size:2 final size:2
Alignment explanation
Indices: 1074260--1074309 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1074250 TTAGATTCAT
1074260 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1074302 TC TC TC TC
1 TC TC TC TC
1074310 CAACAGGATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1076983 original size:41 final size:41
Alignment explanation
Indices: 1076896--1077938 Score: 982
Period size: 41 Copynumber: 25.0 Consensus size: 41
1076886 TTACAGGCCC
* *
1076896 AGTAGGAATACCTTGTTACAAGAAGACTGTTATATTAGCAGGCT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* * **
1076940 TGTAGGAATAACTTGTTACAAGACTGTTATATTAGAAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * *
1076981 TGTAGGAATACTTTGTTACAAGAAGACTGTTATATTAGCAGCCT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* * * ** * * * *
1077025 TGTAGGAATAACTTGTTACAAGAATAATATATAATCA-ACA
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* *
1077065 AGTAGGAATATCTTGTTACAAGACTGTTATTTTACCAG-CT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* *
1077105 AGTAGGAATA-TTTGTTACAAGAAGACTGTTATATTACAAGCCT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* * * *
1077148 AGAAGAAATAACTTATTACAAGACTGTTATATTACCAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * *
1077189 AGTAGGAAAACCTTGTTACAGGACCACTGTTATATTACGAGCCT
1 AGTAGGAATACCTTGTTACA--A-GACTGTTATATTACCAGCCT
* *
1077233 AGAAGGAATACCTTGTTACAAGACTGTTATATTACTAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * *
1077274 CGAAGGAATACCTTGTTACAAGAAGACTGTTATTTTACAAGCCT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* * * *
1077318 AGAAGAAATAACTTATTACAAGACTGTTATATTACCAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
** * *
1077359 AGTAGGAATACCTTAATA-AGAAACTGTTATGTTACCAG-CT
1 AGTAGGAATACCTTGTTACA-AGACTGTTATATTACCAGCCT
* * * *
1077399 AGTAGTAATACTTTGTTACAAGAATGTTATTTTACCAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * *
1077440 AGTAAGAATACTTTGTTCCAAGACTGTTATATAACCAG-CT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * * ** *
1077480 AGAAGGAATACTTTGTTAAAAGACTTTTGCATTACCAGCCA
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * * *
1077521 AGAAGAAATACCTTATTACAAGACTGTTATATTACCATCTT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * *
1077562 GGTAGGAATCCCGTGTTACAAGAAGACTGTTATATTACAAGCCT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
** *
1077606 AGTAGGAATACCTTGTTACAGGAAGACTGTTATATTATAAGCGT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* * * *
1077650 AGAAGAAATACCTTGCTACAAGACTGTTATATTACAAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
** *
1077691 AGTAGGAATACCTTGTTACAGGAAGACTGTTATATTATAAGCGT
1 AGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCT
* *
1077735 AGAAGGAATACCTTGTTACAAGACTGTTATATTACCGGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * *
1077776 AGAAGAAATACCTTGTTACAAGACTGTAATATTACCAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * *
1077817 AGTAAGAATACCTTGTTACAAGACTGTTATATTACCGGCCA
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * * * *
1077858 AGAAAGAATGCCTTGTTACAAGAATGTTATTTTACCAGCCT
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
* * *
1077899 AGTAAGAATACTTTGTTCCAAGACTGTTATATTACCAGCC
1 AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCC
1077939 AAAAAAGAAT
Statistics
Matches: 832, Mismatches: 142, Indels: 53
0.81 0.14 0.05
Matches are distributed among these distances:
39 7 0.01
40 105 0.13
41 448 0.54
42 18 0.02
43 11 0.01
44 243 0.29
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (41 bp):
AGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCT
Found at i:1077040 original size:85 final size:82
Alignment explanation
Indices: 1076885--1077938 Score: 988
Period size: 85 Copynumber: 12.6 Consensus size: 82
1076875 TTCTTTTTAC
* * * * *
1076885 ATTACAGGCCCAGTAGGAATACCTTGTTACAAGAAGACTGTTATATTAGCAGGCTTGTAGGAATA
1 ATTACAAGCCTAGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCTAGTAGGAATA
*
1076950 ACTTGTTACAAGACTGTTAT
63 CCTTGTTACAAGACTGTTAT
* * * * *
1076970 ATTAGAAGCCTTGTAGGAATACTTTGTTACAAGAAGACTGTTATATTAGCAGCCTTGTAGGAATA
1 ATTACAAGCCTAGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCTAGTAGGAATA
* * **
1077035 ACTTGTTACAAGAATAATAT
63 CCTTGTTACAAGACTGTTAT
* * * * *
1077055 ATAATCAA--CAAGTAGGAATATCTTGTTACAAGACTGTTATTTTACCAG-CTAGTAGGAATA-T
1 ATTA-CAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACC
1077116 TTGTTACAAGAAGACTGTTAT
65 TTGTTAC---AAGACTGTTAT
* * * * *
1077137 ATTACAAGCCTAGAAGAAATAACTTATTACAAGACTGTTATATTACCAGCCTAGTAGGAAAACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
*
1077202 TGTTACAGGACCACTGTTAT
66 TGTTACA--A-GACTGTTAT
* * * * *
1077222 ATTACGAGCCTAGAAGGAATACCTTGTTACAAGACTGTTATATTACTAGCCTCGAAGGAATACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
1077287 TGTTACAAGAAGACTGTTAT
66 TGTTAC---AAGACTGTTAT
* * * * *
1077307 TTTACAAGCCTAGAAGAAATAACTTATTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
** *
1077372 TAATA-AGAAACTGTTAT
66 TGTTACA-AGACTGTTAT
* * * * * * * *
1077389 GTTACCAG-CTAGTAGTAATACTTTGTTACAAGAATGTTATTTTACCAGCCTAGTAAGAATACTT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
*
1077453 TGTTCCAAGACTGTTAT
66 TGTTACAAGACTGTTAT
* * * * * * ** * * *
1077470 ATAACCAG-CTAGAAGGAATACTTTGTTAAAAGACTTTTGCATTACCAGCCAAGAAGAAATACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
*
1077534 TATTACAAGACTGTTAT
66 TGTTACAAGACTGTTAT
* * * * * * *
1077551 ATTACCATCTTGGTAGGAATCCCGTGTTACAAGAAGACTGTTATATTACAAGCCTAGTAGGAATA
1 ATTACAAGCCTAGTAGGAATACCTTGTTAC---AAGACTGTTATATTACCAGCCTAGTAGGAATA
1077616 CCTTGTTACAGGAAGACTGTTAT
63 CCTTGTTAC---AAGACTGTTAT
* * * * * *
1077639 ATTATAAGCGTAGAAGAAATACCTTGCTACAAGACTGTTATATTACAAGCCTAGTAGGAATACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
1077704 TGTTACAGGAAGACTGTTAT
66 TGTTAC---AAGACTGTTAT
* * * * * *
1077724 ATTATAAGCGTAGAAGGAATACCTTGTTACAAGACTGTTATATTACCGGCCTAGAAGAAATACCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
*
1077789 TGTTACAAGACTGTAAT
66 TGTTACAAGACTGTTAT
* * * * * * *
1077806 ATTACCAGCCTAGTAAGAATACCTTGTTACAAGACTGTTATATTACCGGCCAAGAAAGAATGCCT
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
*
1077871 TGTTACAAGAATGTTAT
66 TGTTACAAGACTGTTAT
* * * * *
1077888 TTTACCAGCCTAGTAAGAATACTTTGTTCCAAGACTGTTATATTACCAGCC
1 ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCC
1077939 AAAAAAGAAT
Statistics
Matches: 813, Mismatches: 133, Indels: 49
0.82 0.13 0.05
Matches are distributed among these distances:
79 7 0.01
80 11 0.01
81 149 0.18
82 170 0.21
83 34 0.04
84 29 0.04
85 378 0.46
86 3 0.00
88 32 0.04
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (82 bp):
ATTACAAGCCTAGTAGGAATACCTTGTTACAAGACTGTTATATTACCAGCCTAGTAGGAATACCT
TGTTACAAGACTGTTAT
Found at i:1077080 original size:40 final size:40
Alignment explanation
Indices: 1077026--1077127 Score: 116
Period size: 40 Copynumber: 2.6 Consensus size: 40
1077016 TAGCAGCCTT
* *
1077026 GTAGGAATAACTTGTTACAAGAATAATATATAATCAACAA
1 GTAGGAATATCTTGTTACAAGAATAATATATAACCAACAA
* ** * * * *
1077066 GTAGGAATATCTTGTTACAAGACTGTTATTTTACCAGCTA
1 GTAGGAATATCTTGTTACAAGAATAATATATAACCAACAA
1077106 GTAGGAATAT-TTGTTACAAGAA
1 GTAGGAATATCTTGTTACAAGAA
1077128 GACTGTTATA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
39 11 0.21
40 41 0.79
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (40 bp):
GTAGGAATATCTTGTTACAAGAATAATATATAACCAACAA
Found at i:1078246 original size:44 final size:44
Alignment explanation
Indices: 1078187--1078295 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 44
1078177 TCTTCAAGAA
** * * *
1078187 TGTTATATTCCCAGCCAAGTAGGAATGCTTTGTTACAAGAAAAC
1 TGTTATATAACCAGCCTAGTAGGAATACTTTGTAACAAGAAAAC
* * *
1078231 TGTTGTATAACCAGCCTAGAAGGAATACTTTGTAACAAGAAGAC
1 TGTTATATAACCAGCCTAGTAGGAATACTTTGTAACAAGAAAAC
*
1078275 TGTTATATTACCAGCCTAGTA
1 TGTTATATAACCAGCCTAGTA
1078296 AGAAAACCTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (44 bp):
TGTTATATAACCAGCCTAGTAGGAATACTTTGTAACAAGAAAAC
Found at i:1084744 original size:57 final size:57
Alignment explanation
Indices: 1084656--1084826 Score: 317
Period size: 57 Copynumber: 3.0 Consensus size: 57
1084646 TAGAGTTTAA
*
1084656 ACAGAATTACA-AGATTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1 ACAGAA-TACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1084713 ACAGAATACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1 ACAGAATACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1084770 ACAGAATACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1 ACAGAATACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
1084827 CCACTGCGTG
Statistics
Matches: 112, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
56 4 0.04
57 108 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (57 bp):
ACAGAATACAGAGGTTGGACTTACACTTCAACGCTAGCGATCAGCTTATGGGGATCT
Found at i:1086028 original size:41 final size:41
Alignment explanation
Indices: 1085983--1086871 Score: 1141
Period size: 41 Copynumber: 21.8 Consensus size: 41
1085973 ATGTCACCTG
* *
1085983 ATGTCATAAATGATATCTCTTGAGATACAGTAAG-TAATACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
* * *
1086024 ATGTCATATATGATATTTTC-TGAGACACAGTACGTTAAACA
1 ATGTCATATATGATA-TCTCATGAGATACAGTAAGTTAAACA
* * * * * *
1086065 AAGTCATATTTGATATCTCATAAGACAGAGTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
1086106 ATGTCATATATGATATCTCATGAGATACAGTAAG-TAACACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
*
1086147 ATGTCATATATGATTTCTCATGAGATACAGTAAG-TAACACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
* *
1086188 ATGTCATATATGATATCTCAGGAGATACAGTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086229 ATGTCATATATGATATCTCATGAGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* * * *
1086270 ATGTCATATTTGATATCTCATGTGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* * * *
1086311 ATGTCTTATTTGATATCTCATGAGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
*
1086352 ATGTCTTATATGATATCTCATGAGATACAGTAAG-TAACACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
* * * *
1086393 ATGCCATATATGATATCTCATGAGTTAAAGTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
1086434 ATGTC--ATATGATATCTCATGAGATACAGT-AG-TAACACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
* * *
1086472 ATGTCATATATGATATCTCATGCGATAAAGTAAGTAAAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* * * *
1086513 ATGCCATATAAGTTATCTAATGAGATACAGTAAG-TAACACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAA-ACA
* * **
1086554 ATGCCATATATGATATCTCATGAGATAAAGTAAGCAAAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* * *
1086595 ATGCCATATATGATATCTCATGAGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086636 ATGTCATATATGATATCTCATGAGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086677 ATGTCATATATGATATCTCATGAGATACATTAAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086718 ATGTCATATATGATATCTCATGAGATACAGTTAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086759 ATGTCTTATATGATATCTCATGAGATACATTAAGTTAAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* * *
1086800 ATGTCATATATGATATCTCATTAGATACAGTTAGTTGAACA
1 ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
* *
1086841 ATGTCTTATATGATATCTCGTGAGATACAGT
1 ATGTCATATATGATATCTCATGAGATACAGT
1086872 CAGTAACACA
Statistics
Matches: 760, Mismatches: 74, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
37 2 0.00
38 10 0.01
39 22 0.03
40 31 0.04
41 681 0.90
42 14 0.02
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (41 bp):
ATGTCATATATGATATCTCATGAGATACAGTAAGTTAAACA
Found at i:1092625 original size:14 final size:14
Alignment explanation
Indices: 1092606--1092632 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1092596 TTTATCTTGA
1092606 AAAAAGAGAGAGAG
1 AAAAAGAGAGAGAG
1092620 AAAAAGAGAGAGA
1 AAAAAGAGAGAGA
1092633 TTCTTACCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAGAGAG
Found at i:1101725 original size:15 final size:17
Alignment explanation
Indices: 1101705--1101745 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1101695 GACGTCATTT
1101705 TATAAC-AAATT-CAGA
1 TATAACGAAATTACAGA
*
1101720 TATAACGAATTTACAGA
1 TATAACGAAATTACAGA
*
1101737 TATAGCGAA
1 TATAACGAA
1101746 CTGATTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 6 0.27
16 4 0.18
17 12 0.55
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (17 bp):
TATAACGAAATTACAGA
Found at i:1109298 original size:12 final size:12
Alignment explanation
Indices: 1109276--1109331 Score: 76
Period size: 12 Copynumber: 4.6 Consensus size: 12
1109266 GGAATCACCT
*
1109276 TGTCCGTCCGTC
1 TGTCTGTCCGTC
*
1109288 CGTCTGTCCGTC
1 TGTCTGTCCGTC
*
1109300 TGTCTGTCTGTC
1 TGTCTGTCCGTC
1109312 TTGTCTGTCCGTC
1 -TGTCTGTCCGTC
1109325 TGTCTGT
1 TGTCTGT
1109332 GCAATCGTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
12 27 0.71
13 11 0.29
ACGTcount: A:0.00, C:0.32, G:0.25, T:0.43
Consensus pattern (12 bp):
TGTCTGTCCGTC
Found at i:1109300 original size:8 final size:8
Alignment explanation
Indices: 1109276--1109328 Score: 70
Period size: 8 Copynumber: 6.5 Consensus size: 8
1109266 GGAATCACCT
1109276 TGTCCGTC
1 TGTCCGTC
*
1109284 CGTCCGTC
1 TGTCCGTC
1109292 TGTCCGTC
1 TGTCCGTC
*
1109300 TGTCTGTC
1 TGTCCGTC
*
1109308 TGTCTTGTC
1 TGTC-CGTC
1109317 TGTCCGTC
1 TGTCCGTC
1109325 TGTC
1 TGTC
1109329 TGTGCAATCG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
8 32 0.80
9 8 0.20
ACGTcount: A:0.00, C:0.34, G:0.25, T:0.42
Consensus pattern (8 bp):
TGTCCGTC
Found at i:1109304 original size:4 final size:4
Alignment explanation
Indices: 1109289--1109331 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
1109279 CCGTCCGTCC
* *
1109289 GTCT GTCC GTCT GTCT GTCT GTCTT GTCT GTCC GTCT GTCT GT
1 GTCT GTCT GTCT GTCT GTCT GTC-T GTCT GTCT GTCT GTCT GT
1109332 GCAATCGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.00, C:0.28, G:0.26, T:0.47
Consensus pattern (4 bp):
GTCT
Found at i:1109319 original size:17 final size:17
Alignment explanation
Indices: 1109285--1109329 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
1109275 TTGTCCGTCC
*
1109285 GTCCGTCTGTC-CGTCT
1 GTCCGTCTGTCTTGTCT
*
1109301 GTCTGTCTGTCTTGTCT
1 GTCCGTCTGTCTTGTCT
1109318 GTCCGTCTGTCT
1 GTCCGTCTGTCT
1109330 GTGCAATCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.00, C:0.31, G:0.24, T:0.44
Consensus pattern (17 bp):
GTCCGTCTGTCTTGTCT
Found at i:1109533 original size:146 final size:146
Alignment explanation
Indices: 1109336--1109878 Score: 928
Period size: 146 Copynumber: 3.7 Consensus size: 146
1109326 GTCTGTGCAA
*
1109336 TCGTGTCCGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
1 TCGTGTCAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
*
1109401 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAAGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAGGTCAAGGTCACTGGC
* *
1109466 AGAAAAAATACAAAAT
131 AGAAAAAGTGCAAAAT
*
1109482 TCGTGTGAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
1 TCGTGTCAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
1109547 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAGGTCAAGGTCACTGGC
1109612 AGAAAAAGTGCAAAAT
131 AGAAAAAGTGCAAAAT
* * * *
1109628 TTGTGTCCGGTCCATATCTTTCTTATGGGGAAACATTAGAAGTTCTTACTTCACACAAAGATTGC
1 TCGTGTCAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
*
1109693 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATTTGGGCAAGGTCAAGGTCACTGGC
66 TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAGGTCAAGGTCACTGGC
1109758 AGAAAAAGTGCAAAAT
131 AGAAAAAGTGCAAAAT
* * *
1109774 TCGTGTCCA-GTCCATATCTTTCTTATGGGGAAACATTGGAAGTTCTTACTTTAAACAAAGATTG
1 TCGTGT-CAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTG
*
1109838 CTTATGA-TTAAAGGGTGTGTCATGACCTTGACCCAAGGTCA
65 CTTATGACCT-AAGGGTGTGTCATGACCTTGACCCAAGGTCA
1109879 ATTGAGAAAG
Statistics
Matches: 378, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
145 1 0.00
146 376 0.99
147 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (146 bp):
TCGTGTCAGGTCCATATCTTTCTTATGGAGAAACATTGGAAGTTCTTACTTCACACAAAGATTGC
TTATGACCTAAGGGTGTGTCATGACCTTGACCCAAGGTCATCTGGGCAAGGTCAAGGTCACTGGC
AGAAAAAGTGCAAAAT
Found at i:1110498 original size:23 final size:23
Alignment explanation
Indices: 1110472--1110518 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
1110462 AATGGTCACA
1110472 AATAACATTCCACTATTCACTCC
1 AATAACATTCCACTATTCACTCC
*
1110495 AATAACATTCCACTATTCATTCC
1 AATAACATTCCACTATTCACTCC
1110518 A
1 A
1110519 GCAAGTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (23 bp):
AATAACATTCCACTATTCACTCC
Found at i:1110517 original size:12 final size:12
Alignment explanation
Indices: 1110477--1110518 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
1110467 TCACAAATAA
1110477 CATTCCACTATT
1 CATTCCACTATT
* * *
1110489 CACTCCAATA-A
1 CATTCCACTATT
1110500 CATTCCACTATT
1 CATTCCACTATT
1110512 CATTCCA
1 CATTCCA
1110519 GCAAGTTGAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (12 bp):
CATTCCACTATT
Found at i:1123082 original size:23 final size:23
Alignment explanation
Indices: 1123021--1123093 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
1123011 TGATATTACA
1123021 GTTT-CGGGAGGGCAATATAACT
1 GTTTCCGGGAGGGCAATATAACT
* *
1123043 ATTTCCTGTGA----AATATAACT
1 GTTTCC-GGGAGGGCAATATAACT
1123063 GTTTCCGGGAGGGCAATATAACT
1 GTTTCCGGGAGGGCAATATAACT
1123086 GTTTCCGG
1 GTTTCCGG
1123094 TGTGATTCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
19 3 0.07
20 14 0.34
22 3 0.07
23 18 0.44
24 3 0.07
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (23 bp):
GTTTCCGGGAGGGCAATATAACT
Found at i:1127694 original size:27 final size:27
Alignment explanation
Indices: 1127656--1127752 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
1127646 GAACGAGACT
* * *
1127656 ACGGGCGGACAGAAAGAGCAAAGTCTG
1 ACGGACGGACAGAAACAGCAAAGTTTG
* * * *
1127683 ACGGACGAACAGGAGACAACGAAA-TTTA
1 ACGGACGGACA-GAAACAGC-AAAGTTTG
1127711 ACGGACGGACAGAAACAGCAAAGTTTG
1 ACGGACGGACAGAAACAGCAAAGTTTG
*
1127738 ACGGACGGTCAGAAA
1 ACGGACGGACAGAAA
1127753 GTTCAAAGAG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
26 3 0.05
27 32 0.58
28 17 0.31
29 3 0.05
ACGTcount: A:0.41, C:0.19, G:0.31, T:0.09
Consensus pattern (27 bp):
ACGGACGGACAGAAACAGCAAAGTTTG
Found at i:1130211 original size:2 final size:2
Alignment explanation
Indices: 1130204--1130242 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
1130194 GTACATTCAC
*
1130204 GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1130243 TTTCTTTCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1135085 original size:11 final size:10
Alignment explanation
Indices: 1135056--1135086 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
1135046 GCGGCTGGGC
1135056 GGGGTGTGTG
1 GGGGTGTGTG
1135066 GGGGTGTGTG
1 GGGGTGTGTG
1135076 GGGGTCGTGTG
1 GGGGT-GTGTG
1135087 TCGATTTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.75
11 5 0.25
ACGTcount: A:0.00, C:0.03, G:0.68, T:0.29
Consensus pattern (10 bp):
GGGGTGTGTG
Found at i:1140434 original size:55 final size:55
Alignment explanation
Indices: 1140350--1140461 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
1140340 GTGTCTCACA
1140350 TCTACCTGACACCCCCAAACCCATCACTTAAGTCCTCCCACTGGCAGTTTCATGT
1 TCTACCTGACACCCCCAAACCCATCACTTAAGTCCTCCCACTGGCAGTTTCATGT
*
1140405 TCTACCTGACACCCCCAAACCCATCACTTAAGTCCTCCCATTGGCAGTTTCATGT
1 TCTACCTGACACCCCCAAACCCATCACTTAAGTCCTCCCACTGGCAGTTTCATGT
1140460 TC
1 TC
1140462 ATATTGTTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.23, C:0.39, G:0.11, T:0.27
Consensus pattern (55 bp):
TCTACCTGACACCCCCAAACCCATCACTTAAGTCCTCCCACTGGCAGTTTCATGT
Found at i:1147461 original size:16 final size:17
Alignment explanation
Indices: 1147428--1147470 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
1147418 TGAAAAAACA
1147428 AAAAAAACAAAACGAAC
1 AAAAAAACAAAACGAAC
**
1147445 AAAAAAACCCAAC-AAC
1 AAAAAAACAAAACGAAC
*
1147461 AAACAAACAA
1 AAAAAAACAA
1147471 TAATCAAACA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.74, C:0.23, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAACGAAC
Found at i:1148395 original size:40 final size:40
Alignment explanation
Indices: 1148292--1148816 Score: 658
Period size: 40 Copynumber: 13.3 Consensus size: 40
1148282 CTTTGTTTTG
1148292 GAGTTGTTGACCAG---TATTGTCACTTACCCATTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* *
1148329 GAGTTGTTGA--TGTCTTATTGTCACTTACCCATTGCGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* *
1148367 GAGTTGTTGACCAGTCTTACTGTCACTTACCCACTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* *
1148407 GAGTTGTTGACCAGTCTTATTATCACTTACCCACTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
** * *
1148447 GAGTTGTTGATAAGTCTCATTGTCACTTACCCATTATGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
** *
1148487 GAGTTGTTGATAAGTCTTATTGTCACTTACCCATTGCGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
*
1148527 GAGTTGTTGACCAGTCTTATTGTCATTTACCCATTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* * * *
1148567 CAGTTGTTGACCAGTCTTATTGTCATTTACCCACTGTATT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* * * *
1148607 GA-TCTGTTGACCAGTCTTACTGTAATTTACCCACTGTGTT
1 GAGT-TGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* * * * *
1148647 GAGTTGTTGACCAGTCTAACTGTCATTTACCCACTGTATT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
* * *
1148687 GA-TCTGTTGACCAGTCTTACTATCACTTACCCATTGCGTT
1 GAGT-TGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
**
1148727 GAAATGTTGACCAGTC----TGTCACTTACCCATTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
*
1148763 GAGTTGTTGACCAGTCTTACTGTCACTTACCCATTGTGTT
1 GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
1148803 GAGTTGTTGACCAG
1 GAGTTGTTGACCAG
1148817 GCCCCACCAG
Statistics
Matches: 433, Mismatches: 42, Indels: 23
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.00
36 32 0.07
37 10 0.02
38 32 0.07
39 2 0.00
40 355 0.82
41 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.19, T:0.40
Consensus pattern (40 bp):
GAGTTGTTGACCAGTCTTATTGTCACTTACCCATTGTGTT
Found at i:1151536 original size:44 final size:44
Alignment explanation
Indices: 1151439--1151536 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
1151429 TTAGATATCT
* *
1151439 GACTGGTTTGGTACCAACCCATTTTTTAATTCTCCGATAACATA
1 GACTGGTTTGGTACCAACCCATTTTCTAATTCTCCGATAACACA
* * * * * *
1151483 AACTTGTTTGGTACCTACCCATTTTCTGATTCTCTGATATCACA
1 GACTGGTTTGGTACCAACCCATTTTCTAATTCTCCGATAACACA
1151527 GACTGGTTTG
1 GACTGGTTTG
1151537 TTTGAGGGAG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (44 bp):
GACTGGTTTGGTACCAACCCATTTTCTAATTCTCCGATAACACA
Found at i:1151897 original size:41 final size:41
Alignment explanation
Indices: 1151848--1152008 Score: 216
Period size: 41 Copynumber: 4.0 Consensus size: 41
1151838 CACATGTATG
* **
1151848 GATGTCTATCATATAAAGTACAGCTAAAACTTTACACAATT
1 GATGTCTATCATAGAAAACACAGCTAAAACTTTACACAATT
* * *
1151889 GATGTCTATCATAAAAAACACAGTTTAAACTTTACACAATT
1 GATGTCTATCATAGAAAACACAGCTAAAACTTTACACAATT
* * *
1151930 GATGTCTATCATAGAAAACACAGTTTAAACTTTACACAA-G
1 GATGTCTATCATAGAAAACACAGCTAAAACTTTACACAATT
**
1151970 GATGTCTATCATAGAAAGTACAGCTAAAACTTTACACAA
1 GATGTCTATCATAGAAAACACAGCTAAAACTTTACACAA
1152009 AAAATTACCC
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 35 0.32
41 74 0.68
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (41 bp):
GATGTCTATCATAGAAAACACAGCTAAAACTTTACACAATT
Found at i:1153054 original size:13 final size:13
Alignment explanation
Indices: 1153036--1153063 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1153026 AGCATTCAGA
1153036 CTGTCGTGAATAG
1 CTGTCGTGAATAG
1153049 CTGTCGTGAATAG
1 CTGTCGTGAATAG
1153062 CT
1 CT
1153064 CAACACCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (13 bp):
CTGTCGTGAATAG
Found at i:1160768 original size:2 final size:2
Alignment explanation
Indices: 1160761--1160792 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1160751 ATTATTAGTG
1160761 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1160793 GAGAGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1160797 original size:2 final size:2
Alignment explanation
Indices: 1160792--1160840 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
1160782 ATATATATAT
1160792 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1160834 AG AG AG A
1 AG AG AG A
1160841 TAACTGCAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1161610 original size:9 final size:9
Alignment explanation
Indices: 1161598--1161637 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
1161588 TAATTAAGAT
1161598 ATTAATTAG
1 ATTAATTAG
*
1161607 ATTAGATAAG
1 ATTA-ATTAG
1161617 ATTAATTAG
1 ATTAATTAG
1161626 ATTAATTA-
1 ATTAATTAG
1161634 ATTA
1 ATTA
1161638 TAATATTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 4 0.14
9 16 0.57
10 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (9 bp):
ATTAATTAG
Found at i:1164573 original size:21 final size:21
Alignment explanation
Indices: 1164543--1164626 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
1164533 TTCTATTAAT
*
1164543 TATGTGGACATGCAAGATAAA
1 TATGTTGACATGCAAGATAAA
**
1164564 TATGTTGACATGCAAGATAGT
1 TATGTTGACATGCAAGATAAA
** * *
1164585 TATGTCAACATGCAACATAAC
1 TATGTTGACATGCAAGATAAA
1164606 TATGTTGACATGCAAGA-AAA
1 TATGTTGACATGCAAGATAAA
1164626 T
1 T
1164627 TGCAATCAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (21 bp):
TATGTTGACATGCAAGATAAA
Found at i:1164725 original size:21 final size:21
Alignment explanation
Indices: 1164701--1164955 Score: 321
Period size: 21 Copynumber: 12.1 Consensus size: 21
1164691 ATACGCTACC
*
1164701 TATTGATGTCAACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164722 TATTTATGTTAACATGCAACT
1 TATTTATGTCAACATGCAACT
* *
1164743 TCTTTATGTCGACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164764 TATTTATGTCGACATGCAACT
1 TATTTATGTCAACATGCAACT
* *
1164785 TAGTTATGTTAACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164806 TCTTTATGTCAACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164827 TATTTATGTCGACATGCAACT
1 TATTTATGTCAACATGCAACT
* *
1164848 TAGTTATGTTAACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164869 TCTTTATGTCAACATGCAACT
1 TATTTATGTCAACATGCAACT
*
1164890 TATTTATGTCGACATGCAACT
1 TATTTATGTCAACATGCAACT
* * *
1164911 TAGTTATGTTAACATGCGACT
1 TATTTATGTCAACATGCAACT
* * ** *
1164932 AAGTTATGTTGACATACAACT
1 TATTTATGTCAACATGCAACT
1164953 TAT
1 TAT
1164956 AAGTTGCATG
Statistics
Matches: 202, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 202 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (21 bp):
TATTTATGTCAACATGCAACT
Found at i:1164955 original size:63 final size:63
Alignment explanation
Indices: 1164701--1164927 Score: 418
Period size: 63 Copynumber: 3.6 Consensus size: 63
1164691 ATACGCTACC
* * * *
1164701 TATTGATGTCAACATGCAACTTATTTATGTTAACATGCAACTTCTTTATGTCGACATGCAACT
1 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
1164764 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
1 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
1164827 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
1 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
1164890 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGC
1 TATTTATGTCGACATGCAACTTAGTTATGTTAACATGC
1164928 GACTAAGTTA
Statistics
Matches: 160, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 160 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (63 bp):
TATTTATGTCGACATGCAACTTAGTTATGTTAACATGCAACTTCTTTATGTCAACATGCAACT
Found at i:1165014 original size:42 final size:42
Alignment explanation
Indices: 1164954--1165141 Score: 232
Period size: 42 Copynumber: 4.5 Consensus size: 42
1164944 CATACAACTT
1164954 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
1 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
* * * *
1164996 CTAAGTTGCATGTCAACATATTCATCTCACATGTCAACATAA
1 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
* ** ** ** * *
1165038 GTAAGTTGCATGTTGACATAAATAAGTTGCATGTTGACATAA
1 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
* *
1165080 ATAAGTTGCATGTCAGCATATTTATCTTGCATGTTAACATAA
1 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
*
1165122 ATAAGTTGCATGTCGACATA
1 ATAAGTTGCATGTCAACATA
1165142 AAAAGGTAGC
Statistics
Matches: 119, Mismatches: 27, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 119 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (42 bp):
ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAA
Found at i:1165049 original size:21 final size:21
Alignment explanation
Indices: 1164954--1165143 Score: 150
Period size: 21 Copynumber: 9.0 Consensus size: 21
1164944 CATACAACTT
*
1164954 ATAAGTTGCATGTCAACATAT
1 ATAAGTTGCATGTCAACATAA
* ** * *
1164975 TTATCTCGCATGTTAACATAA
1 ATAAGTTGCATGTCAACATAA
*
1164996 CTAAGTTGCATGTCAACAT-A
1 ATAAGTTGCATGTCAACATAA
* * *
1165016 TTCA-TCTCACATGTCAACATAA
1 ATAAGT-T-GCATGTCAACATAA
* **
1165038 GTAAGTTGCATGTTGACATAA
1 ATAAGTTGCATGTCAACATAA
**
1165059 ATAAGTTGCATGTTGACATAA
1 ATAAGTTGCATGTCAACATAA
* *
1165080 ATAAGTTGCATGTCAGCATAT
1 ATAAGTTGCATGTCAACATAA
* ** *
1165101 TTATCTTGCATGTTAACATAA
1 ATAAGTTGCATGTCAACATAA
*
1165122 ATAAGTTGCATGTCGACATAA
1 ATAAGTTGCATGTCAACATAA
1165143 A
1 A
1165144 AAGGTAGCAT
Statistics
Matches: 130, Mismatches: 35, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
19 1 0.01
20 4 0.03
21 120 0.92
22 4 0.03
23 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (21 bp):
ATAAGTTGCATGTCAACATAA
Found at i:1165143 original size:63 final size:63
Alignment explanation
Indices: 1164954--1165143 Score: 231
Period size: 63 Copynumber: 3.0 Consensus size: 63
1164944 CATACAACTT
* * *
1164954 ATAAGTTGCATGTCAACATATTTATCTCGCATGTTAACATAACTAAGTTGCATGTCAACAT-A
1 ATAAGTTGCATGTCAACATATTTATCTTGCATGTTAACATAAATAAGTTGCATGTCGACATAA
* * * ** ** * *
1165016 TTCA-TCTCACATGTCAACATAAGTAAGTTGCATGTTGACATAAATAAGTTGCATGTTGACATAA
1 ATAAGT-T-GCATGTCAACATATTTATCTTGCATGTTAACATAAATAAGTTGCATGTCGACATAA
*
1165080 ATAAGTTGCATGTCAGCATATTTATCTTGCATGTTAACATAAATAAGTTGCATGTCGACATAA
1 ATAAGTTGCATGTCAACATATTTATCTTGCATGTTAACATAAATAAGTTGCATGTCGACATAA
1165143 A
1 A
1165144 AAGGTAGCAT
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
61 1 0.01
62 3 0.03
63 93 0.91
64 4 0.04
65 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (63 bp):
ATAAGTTGCATGTCAACATATTTATCTTGCATGTTAACATAAATAAGTTGCATGTCGACATAA
Found at i:1165301 original size:42 final size:42
Alignment explanation
Indices: 1165227--1165311 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
1165217 ATCTAATTGC
* * *
1165227 AATTTTCTTGCATGTCAACATAGTTATGTTGCATGTTGACAT
1 AATTATCTTGCATGTCAACATAGTTATCTTGCATGTCGACAT
*
1165269 AATTATCTTGCATGTCAACATATTTATCTTGCATGTCGACAT
1 AATTATCTTGCATGTCAACATAGTTATCTTGCATGTCGACAT
1165311 A
1 A
1165312 TTTGATGGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (42 bp):
AATTATCTTGCATGTCAACATAGTTATCTTGCATGTCGACAT
Found at i:1165312 original size:21 final size:21
Alignment explanation
Indices: 1165228--1165314 Score: 113
Period size: 21 Copynumber: 4.2 Consensus size: 21
1165218 TCTAATTGCA
1165228 ATTT-TCTTGCATGTCAACAT
1 ATTTATCTTGCATGTCAACAT
* * **
1165248 AGTTATGTTGCATGTTGACAT
1 ATTTATCTTGCATGTCAACAT
*
1165269 AATTATCTTGCATGTCAACAT
1 ATTTATCTTGCATGTCAACAT
*
1165290 ATTTATCTTGCATGTCGACAT
1 ATTTATCTTGCATGTCAACAT
1165311 ATTT
1 ATTT
1165315 GATGGAAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
20 3 0.05
21 53 0.95
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (21 bp):
ATTTATCTTGCATGTCAACAT
Found at i:1179798 original size:46 final size:47
Alignment explanation
Indices: 1179731--1179824 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 47
1179721 TTAAAAAGTT
1179731 AACATAATTTTCTTGCATGTTGATAAAATTT-GAGAGAGAAAGAGAG
1 AACATAATTTTCTTGCATGTTGATAAAATTTAGAGAGAGAAAGAGAG
* *
1179777 AACATAATTTTCTTGCATGTTGATATAATTTAGAGAGAGAGAGAGAG
1 AACATAATTTTCTTGCATGTTGATAAAATTTAGAGAGAGAAAGAGAG
1179824 A
1 A
1179825 GAGAGAAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 30 0.67
47 15 0.33
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.31
Consensus pattern (47 bp):
AACATAATTTTCTTGCATGTTGATAAAATTTAGAGAGAGAAAGAGAG
Found at i:1179815 original size:2 final size:2
Alignment explanation
Indices: 1179808--1179872 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
1179798 GATATAATTT
*
1179808 AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1179850 AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG A
1179873 AAACCATATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1180265 original size:13 final size:14
Alignment explanation
Indices: 1180237--1180279 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
1180227 TAATGTTAAA
*
1180237 TTGTACAATTTGTT
1 TTGTACAATTTTTT
1180251 TTGTA-AATTTTTT
1 TTGTACAATTTTTT
* *
1180264 TTATATAATTTTTT
1 TTGTACAATTTTTT
1180278 TT
1 TT
1180280 TCAAGGAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.67
Consensus pattern (14 bp):
TTGTACAATTTTTT
Found at i:1180320 original size:2 final size:2
Alignment explanation
Indices: 1180313--1180371 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
1180303 GACATTCAGC
1180313 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1180355 CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA C
1180372 TTATGAAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:1183905 original size:2 final size:2
Alignment explanation
Indices: 1183898--1183955 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
1183888 ATACTTTGCG
1183898 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1183940 TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC
1183956 GCGCGCGCGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1191378 original size:144 final size:144
Alignment explanation
Indices: 1191114--1191500 Score: 383
Period size: 144 Copynumber: 2.8 Consensus size: 144
1191104 CTGTCTGTGC
*
1191114 AAAATTCGTGTCCGCTCCATATCTTTCTTATGGAAAAACATTAGAAGTTTTTACTTCACAAAAAG
1 AAAATTCGTGTCCGCTCCATATCTTTCTTATGGAAAAACATTAGAAGTTCTTACTTCACAAAAAG
*
1191179 ATTGCATATGACCTAAAGGTGTGTCATGACCTTGACCCAAGGTCATTCGGACAAGGTCAGGGTCA
66 ATTGCATAAGACCTAAAGGTGTGTCATGACCTTGACCCAAGGTCATTCGGACAAGGTCAGGGTCA
1191244 CTGGTAGGAAGTGA
131 CTGGTAGGAAGTGA
* * * * * * *
1191258 AAAATTTGTGTCTGGTCCATAT-TATTCTTATGGAGAAACATTGGAAGTTCTTACTTCATACAAA
1 AAAATTCGTGTCCGCTCCATATCT-TTCTTATGGAAAAACATTAGAAGTTCTTACTTCACAAAAA
* ** * * *
1191322 GATTGCTTAAGACC-AGGGTGTGTGTCATGACC-TGACCCAATGTCATTTTTGG-CAAGGTCATT
65 GATTGCATAAGACCTAAAG-GTGTGTCATGACCTTGACCCAAGGTCA--TTCGGACAAGGTCA-G
*
1191384 GG-CA--GG-A-AAAGTGAA
126 GGTCACTGGTAGGAAGTG-A
* * * *
1191399 AAAATTCGTGTCCG-TTCATATCTTTCTTATGTAGAAACATTAGAA---CTT-CTT-A-AACAGA
1 AAAATTCGTGTCCGCTCCATATCTTTCTTATGGAAAAACATTAGAAGTTCTTACTTCACAA-AAA
* * * *
1191457 GATTGCTTATGACCTGAAGGTGTGACATGACCTTGACCCAAGGT
65 GATTGCATAAGACCTAAAGGTGTGTCATGACCTTGACCCAAGGT
1191501 AATTTGGGCA
Statistics
Matches: 204, Mismatches: 29, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
134 1 0.00
135 28 0.14
136 14 0.07
137 3 0.01
140 31 0.15
141 15 0.07
142 2 0.01
143 15 0.07
144 89 0.44
145 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (144 bp):
AAAATTCGTGTCCGCTCCATATCTTTCTTATGGAAAAACATTAGAAGTTCTTACTTCACAAAAAG
ATTGCATAAGACCTAAAGGTGTGTCATGACCTTGACCCAAGGTCATTCGGACAAGGTCAGGGTCA
CTGGTAGGAAGTGA
Found at i:1193948 original size:2 final size:2
Alignment explanation
Indices: 1193941--1193981 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1193931 TATAATCTAC
1193941 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1193982 TTATTCTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1207398 original size:102 final size:102
Alignment explanation
Indices: 1207261--1207444 Score: 269
Period size: 102 Copynumber: 1.8 Consensus size: 102
1207251 TAGCTCTCAA
* **
1207261 TCCTGTAAAATGACATAAGGGGACCCCTGGTCACCCTACAATGGATGACCAATGACTCTCCATAG
1 TCCTGTAAAATGACATAAGGGGACACCTGGTCACCCTACAATAAATGACCAATGACTCTCCATAG
1207326 TGTAAAATGACATAAGGTCATGACTGGTGATTCTCTG
66 TGTAAAATGACATAAGGTCATGACTGGTGATTCTCTG
* * * ** ** *
1207363 TCCTGTAAAATGACATAAGGTGACATCTGGTCACCCTACAGTAAATGACCGGTGACTCTCTGTAT
1 TCCTGTAAAATGACATAAGGGGACACCTGGTCACCCTACAATAAATGACCAATGACTCTCCATAG
1207428 TGTAAAATGACATAAGG
66 TGTAAAATGACATAAGG
1207445 GGACCCCTAG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 71 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (102 bp):
TCCTGTAAAATGACATAAGGGGACACCTGGTCACCCTACAATAAATGACCAATGACTCTCCATAG
TGTAAAATGACATAAGGTCATGACTGGTGATTCTCTG
Found at i:1207423 original size:62 final size:61
Alignment explanation
Indices: 1207345--1207580 Score: 247
Period size: 62 Copynumber: 3.8 Consensus size: 61
1207335 ACATAAGGTC
* * * * * **
1207345 ATGACTGGTGATTCTCTGTCCTGTAAAATGACATAAGGTGACATCTGGTCACCCTACAGTAA
1 ATGACCGGTGACTCTCTATACTGTAAAATGACATAAGGTGAC-CCTGGTCACCCTACAGTGG
* * * * * *
1207407 ATGACCGGTGACTCTCTGTATTGTAAAATGACATAAGGGGACCCCTAGTCACCTTACAATGG
1 ATGACCGGTGACTCTCTATACTGTAAAATGACATAAGGTGA-CCCTGGTCACCCTACAGTGG
* * * * *
1207469 ATGACCGGTCACTCTCCATAGTGTAAAATGACATAAGGTGACCCTTGGGCACCCTTCAGTGG
1 ATGACCGGTGACTCTCTATACTGTAAAATGACATAAGGTGACCC-TGGTCACCCTACAGTGG
* * *
1207531 ATGACTGGTGACTCTCTATCCTGTAAAATGACATAAGGTGATCCATGGTC
1 ATGACCGGTGACTCTCTATACTGTAAAATGACATAAGGTGA-CCCTGGTC
1207581 TCCGTATTGA
Statistics
Matches: 143, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
61 3 0.02
62 137 0.96
63 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (61 bp):
ATGACCGGTGACTCTCTATACTGTAAAATGACATAAGGTGACCCTGGTCACCCTACAGTGG
Found at i:1208493 original size:23 final size:23
Alignment explanation
Indices: 1208467--1208512 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1208457 AATCATCAGT
1208467 CATCCACTGTAGGATGACCAGGG
1 CATCCACTGTAGGATGACCAGGG
1208490 CATCCACTGTAGGATGACCAGGG
1 CATCCACTGTAGGATGACCAGGG
1208513 GTCACCTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.17
Consensus pattern (23 bp):
CATCCACTGTAGGATGACCAGGG
Found at i:1208576 original size:62 final size:62
Alignment explanation
Indices: 1208490--1209292 Score: 635
Period size: 62 Copynumber: 13.1 Consensus size: 62
1208480 ATGACCAGGG
* * * * * *
1208490 CATCCACTGTAGGATGACCAGGGGTCACCTTATGTCATTTTACACTTTGGAGAGTGATCGAT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * *
1208552 CATCCTCTTTAGGGTGACCTGGGGTC-CAGTTATGTCATTTTTA-ACTATGGAGAGTCACCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCAC-CTTATGTCA-TTTTACACTATGGAGAGTCACCGGT
* * * * * *
1208614 CATCCTCGGTAAGGTGACCAGGGGTCACCTTATATCCTTTAACACGATGGAGAGTCACCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * * * * ** * *
1208676 CATCCACTGCAGAGTTACCAGGGGTCCCCGTATGTCATTTAACACGGTTGAGAGTCATCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * *
1208738 CATCCACTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACAATGAAGAGTCACCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * * * *
1208800 CATCCTCTTTAGGGTGACCAGGGGTAACCTTATATCATTTTACACGATAGAGAGTCATCGTT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * *
1208862 CATCCTTTGTTA-GGTGACTAGGGGTCCCCATATGTCATTTTATA-TGATGGAGAGTCACCGGT
1 CATCCTCTG-TAGGGTGACCAGGGGTCACCTTATGTCATTTTACACT-ATGGAGAGTCACCGGT
* * * ** * * * * * *
1208924 CATTCACCGTAGTATCACCAGGGGTGACCTTATATTATTTTACACAATGGAGAGTCATCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * * * * * *
1208986 TATCATCTGCAGGGTGGCCAGGAGTCACTTTATGTCATTTTACACTTTGGAGAGTCAGCAGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* ** * * * * * * *
1209048 CGTCAACTGCAGGGTGACCAGGGGTCTCCGTATGTCATTTAACACGATGAATAGTCACCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * * * *
1209110 CATCCACTGCAGGGT-A--A------A-CTTATGTCATTTTACACGATAGATAGACACTGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
* * * * * * *
1209162 CATCCACTGTAGGTTGAACAGGGGTCACCTTATGTCATTTTACACGATAGAGAGACACTGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
** * * * * *
1209224 CATCCTCTGTAGGGTGACCAGTTGTCACTTTATGTCATTTGACGCCATGGAGAGTCATCGGT
1 CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
*
1209286 TATCCTC
1 CATCCTC
1209293 GGGAGGATGA
Statistics
Matches: 584, Mismatches: 139, Indels: 36
0.77 0.18 0.05
Matches are distributed among these distances:
52 41 0.07
53 1 0.00
55 1 0.00
59 1 0.00
61 9 0.02
62 523 0.90
63 8 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (62 bp):
CATCCTCTGTAGGGTGACCAGGGGTCACCTTATGTCATTTTACACTATGGAGAGTCACCGGT
Found at i:1213912 original size:13 final size:13
Alignment explanation
Indices: 1213894--1213919 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1213884 ACCTGTTCTG
1213894 ATAAATTTGGAAA
1 ATAAATTTGGAAA
1213907 ATAAATTTGGAAA
1 ATAAATTTGGAAA
1213920 CCATAAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
ATAAATTTGGAAA
Found at i:1219329 original size:2 final size:2
Alignment explanation
Indices: 1219322--1219367 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
1219312 GTGCTAACAT
*
1219322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1219363 TA TA T
1 TA TA T
1219368 TTGAGTGAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1233487 original size:29 final size:30
Alignment explanation
Indices: 1233413--1233522 Score: 204
Period size: 30 Copynumber: 3.7 Consensus size: 30
1233403 TTTTAGCAAA
*
1233413 ATTTGATTATGAAAATGGGTACTGTATATT
1 ATTTGATTATGAAAATGGGTACCGTATATT
1233443 ATTTGATTATGAAAATGGGTACCGTATATT
1 ATTTGATTATGAAAATGGGTACCGTATATT
1233473 A-TTGATTATGAAAATGGGTACCGTATATT
1 ATTTGATTATGAAAATGGGTACCGTATATT
1233502 ATTTGATTATGAAAATGGGTA
1 ATTTGATTATGAAAATGGGTA
1233523 TATTAGTTTT
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
29 29 0.37
30 49 0.63
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.40
Consensus pattern (30 bp):
ATTTGATTATGAAAATGGGTACCGTATATT
Found at i:1243372 original size:12 final size:12
Alignment explanation
Indices: 1243349--1243381 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
1243339 ATCACATTTT
1243349 GTCTGT-CGTCC
1 GTCTGTCCGTCC
1243360 GTCTGTCCGTCC
1 GTCTGTCCGTCC
1243372 GTCTGTCCGT
1 GTCTGTCCGT
1243382 AAACTTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.00, C:0.36, G:0.27, T:0.36
Consensus pattern (12 bp):
GTCTGTCCGTCC
Found at i:1247735 original size:22 final size:23
Alignment explanation
Indices: 1247687--1247735 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
1247677 GGTGAAAGAA
* * *
1247687 AATTCGTTATAGTTATTATTACG
1 AATTCGTTATACTGATTATAACG
1247710 AATTCGTTATACTGA-TATAACG
1 AATTCGTTATACTGATTATAACG
1247732 AATT
1 AATT
1247736 ACGGATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (23 bp):
AATTCGTTATACTGATTATAACG
Found at i:1248382 original size:8 final size:8
Alignment explanation
Indices: 1248369--1248432 Score: 82
Period size: 8 Copynumber: 8.5 Consensus size: 8
1248359 GGTTTCACCT
1248369 TGTCCGTC
1 TGTCCGTC
1248377 TGTCCGTC
1 TGTCCGTC
1248385 --T--GTC
1 TGTCCGTC
1248389 TGTCCGTC
1 TGTCCGTC
* *
1248397 CGTCTGTC
1 TGTCCGTC
1248405 TGTCCGTC
1 TGTCCGTC
1248413 TGTCCGTC
1 TGTCCGTC
1248421 TGTCCGTC
1 TGTCCGTC
1248429 TGTC
1 TGTC
1248433 TGTAGACGCA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 3 0.06
6 2 0.04
8 43 0.90
ACGTcount: A:0.00, C:0.36, G:0.25, T:0.39
Consensus pattern (8 bp):
TGTCCGTC
Found at i:1248391 original size:12 final size:12
Alignment explanation
Indices: 1248374--1248435 Score: 79
Period size: 12 Copynumber: 5.2 Consensus size: 12
1248364 CACCTTGTCC
1248374 GTCTGTCCGTCT
1 GTCTGTCCGTCT
*
1248386 GTCTGTCCGTCC
1 GTCTGTCCGTCT
* *
1248398 GTCTGTCTGTCC
1 GTCTGTCCGTCT
1248410 GTCTGTCCGTCT
1 GTCTGTCCGTCT
* *
1248422 GTCCGTCTGTCT
1 GTCTGTCCGTCT
1248434 GT
1 GT
1248436 AGACGCAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.00, C:0.34, G:0.26, T:0.40
Consensus pattern (12 bp):
GTCTGTCCGTCT
Found at i:1263850 original size:20 final size:19
Alignment explanation
Indices: 1263821--1263878 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
1263811 TTTCAAATTA
1263821 CCTATAGGAATATTGATTTT
1 CCTATAGGAATATT-ATTTT
* *
1263841 CCTATGGGAAAAATTATTTT
1 CCTATAGG-AATATTATTTT
1263861 CCTATAGGAAT-TTATTTT
1 CCTATAGGAATATTATTTT
1263879 TGAAAGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 7 0.21
19 2 0.06
20 19 0.58
21 5 0.15
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (19 bp):
CCTATAGGAATATTATTTT
Found at i:1270443 original size:166 final size:165
Alignment explanation
Indices: 1270030--1271055 Score: 1321
Period size: 166 Copynumber: 6.3 Consensus size: 165
1270020 TATTTTTCAA
* * * * *
1270030 AAATCTTCTTCTCAAAAACTATTCGGCCTGAAAAGCTTAAACTT---GTGTGGAGGCATCCTCAG
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTAAAATG-GGA-GAATCCTCAG
** * * * * * * **
1270092 GCAGTGTAAATTCAAGTTTGTTCAAATCATGGTCCACGGGGGAAGGGAGGGGCCACAAGAGGGGG
63 ATAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCGGGGTAA-GGTGGTGCCACAATTGGGGG
1270157 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
127 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
* *
1270196 AAA---TCTTCTAAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
* *
1270258 GTGTAGATTCAAGTTTGTTCAAAT-ATTGGTCCCCAGGGGTAAGGTGGTGCCACAGTTGGGGGAT
66 GTGTAGATTCAAGTTTGTTCAAATCA-TAGTCCCC-GGGGTAAGGTGGTGCCACAATTGGGGGAT
1270322 CAAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
129 CAAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
*
1270359 AAATCTTCTTCTCAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
* * *
1270424 GTGTAGATTCAGGTTTGTTCAAATCATGGTCCCCAGGGGTAGGGTGGTGCCACAATTGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCC-GGGGTAAGGTGGTGCCACAATTGGGGGATC
* **
1270489 AAGTTTTACATAGGAATATAAAGAGAAAATCTTTAA
130 AAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
* * * * * * **
1270525 AAATCTTCTTTTCAAAAACAATTTGGCCAGAAAAGCTCAAATTATAATGGAAGCATTTTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
** *
1270590 GTGTAGATTCAAGTTTGTTCATGTCATAGTCCCCGGGAGTAGGGTGGTGCCACAATTGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCGGG-GTAAGGTGGTGCCACAATTGGGGGATC
* *
1270655 ATGTTTTACAAAGGAATATATAGAGAAAATCTTTTT
130 AAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
*
1270691 AAATCTTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
* *
1270756 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTGTGGTTAAGGTGGTGCCACAATTGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCG-GGGTAAGGTGGTGCCACAATTGGGGGATC
1270821 AAGTTTTACATAGGAATATATAGAG---A-------
130 AAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
* * ** * * *
1270847 AAATCTTCTTCTCAAAAACTATTTGGCCAGAAATGCTCAAATTTGAGTGGAAGCATCCTCAGATA
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
* * **
1270912 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTGTGGGTAAGGTGGGGCCACAACGGGGGGATC
66 GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCG-GGGTAAGGTGGTGCCACAATTGGGGGATC
* **
1270977 AAGTGTTACATAGGAATATATAGAGAAAATCTTTAA
130 AAGTTTTACATAGGAATATATAGAGAAAATCTTTTT
* *
1271013 AAATCTTCTTCTCAAAAACTATTTGGCCAGAAATGCTCAAATT
1 AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATT
1271056 TGAGTGGAAG
Statistics
Matches: 768, Mismatches: 71, Indels: 42
0.87 0.08 0.05
Matches are distributed among these distances:
156 142 0.18
159 1 0.00
162 3 0.00
163 128 0.17
164 9 0.01
165 5 0.01
166 477 0.62
167 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (165 bp):
AAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATA
GTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCGGGGTAAGGTGGTGCCACAATTGGGGGATCA
AGTTTTACATAGGAATATATAGAGAAAATCTTTTT
Found at i:1271030 original size:488 final size:486
Alignment explanation
Indices: 1270028--1271055 Score: 1427
Period size: 488 Copynumber: 2.1 Consensus size: 486
1270018 GGTATTTTTC
* * * * * * *
1270028 AAAAATCTTCTTCTCAAAAACTATTCGGCCTGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTTGGCCAGAAAAGCTCAAA-TTATATGGAAGCATCCTCAGA
* *
1270093 CAGTGTAAATTCAAGTTTGTTCAAATCATGGTCCACGGGGGAAGGGAGGGGCCACAAGAGGGGGA
65 CAGTGTAAATTCAAGTTTGTTCAAATCATAGTCCACGGGAGAAGGGAGGGGCCACAAGAGGGGGA
* *
1270158 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTTTTAAATCTTCTAAAAAACTATTAGGCCAA
130 TCAAGTTTTACAAAGGAATATATAGAGAAAATCTTTTTAAATCTTCTAAAAAACTATCAGGCCAA
*
1270223 AAAAGCTCAAATTAAAATGGGAGAATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATATTGGT
195 AAAAGCTCAAATTAAAATGGGAGAATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATATTAGT
*
1270288 CCCCAGGGGTAAGGTGGTGCCACAGTTGGGGGATCAAGTTTTACATAGGAATATATAGAGAAAAT
260 CCCCAGGGGTAAGGTGGTGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAG--AA-
*
1270353 CTTTTTAAATCTTCTTCTCAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGGAGAATCCT
322 -----TAAATCTTCTTCTCAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGAAGAATCCT
* * * * **
1270418 CAGATAGTGTAGATTCAGGTTTGTTCAAATCATGGTCCCCAGGGGTAGGGTGGTGCCACAATTGG
382 CAGATAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCAGGGGTAAGGTGGGGCCACAACGGG
*
1270483 GGGATCAAGTTTTACATAGGAATATAAAGAGAAAATCTTT
447 GGGATCAAGTGTTACATAGGAATATAAAGAGAAAATCTTT
* * **
1270523 AAAAATCTTCTTTTCAAAAACAATTTGGCCAGAAAAGCTCAAATTATAATGGAAGCATTTTCAGA
1 AAAAATCTTCTTCTCAAAAACTATTTGGCCAGAAAAGCTCAAATTAT-ATGGAAGCATCCTCAGA
* * ** * * * * **
1270588 TAGTGTAGATTCAAGTTTGTTCATGTCATAGTCCCCGGGAGTAGGGTGGTGCCACAATTGGGGGA
65 CAGTGTAAATTCAAGTTTGTTCAAATCATAGTCCACGGGAGAAGGGAGGGGCCACAAGAGGGGGA
* *
1270653 TCATGTTTTACAAAGGAATATATAGAGAAAATCTTTTTAAATCTTCTTCTCAAAAACTATCAGGC
130 TCAAGTTTTACAAAGGAATATATAGAGAAAATCTTTTTAAA---TCTTCTAAAAAACTATCAGGC
*
1270718 CAGAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATCA-
192 CAAAAAAGCTCAAATTAAAATGGGAGAATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAAT-AT
* *
1270782 TAGT-CCCTGTGGTTAAGGTGGTGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAG
256 TAGTCCCCAG-GGGTAAGGTGGTGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAG
* * * ** * *
1270846 -A-AAATCTTCTTCTCAAAAACTATTTGGCCAGAAATGCTCAAATTTGAGTGGAAGCATCCTCAG
320 AATAAATCTTCTTCTCAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGAAGAATCCTCAG
*
1270909 ATAGTGTAGATTCAAGTTTGTTCAAATCATAGT-CCCTGTGGGTAAGGTGGGGCCACAACGGGGG
385 ATAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCCAG-GGGTAAGGTGGGGCCACAACGGGGG
*
1270973 GATCAAGTGTTACATAGGAATATATAGAGAAAATCTTT
449 GATCAAGTGTTACATAGGAATATAAAGAGAAAATCTTT
*
1271011 AAAAATCTTCTTCTCAAAAACTATTTGGCCAGAAATGCTCAAATT
1 AAAAATCTTCTTCTCAAAAACTATTTGGCCAGAAAAGCTCAAATT
1271056 TGAGTGGAAG
Statistics
Matches: 474, Mismatches: 52, Indels: 21
0.87 0.10 0.04
Matches are distributed among these distances:
487 4 0.01
488 184 0.39
494 3 0.01
495 143 0.30
497 4 0.01
498 135 0.28
499 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (486 bp):
AAAAATCTTCTTCTCAAAAACTATTTGGCCAGAAAAGCTCAAATTATATGGAAGCATCCTCAGAC
AGTGTAAATTCAAGTTTGTTCAAATCATAGTCCACGGGAGAAGGGAGGGGCCACAAGAGGGGGAT
CAAGTTTTACAAAGGAATATATAGAGAAAATCTTTTTAAATCTTCTAAAAAACTATCAGGCCAAA
AAAGCTCAAATTAAAATGGGAGAATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAATATTAGTC
CCCAGGGGTAAGGTGGTGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAATAAA
TCTTCTTCTCAAAAACTATTAGGCCAAAAAAGCTCAAATTAAAATGGAAGAATCCTCAGATAGTG
TAGATTCAAGTTTGTTCAAATCATAGTCCCCAGGGGTAAGGTGGGGCCACAACGGGGGGATCAAG
TGTTACATAGGAATATAAAGAGAAAATCTTT
Found at i:1272263 original size:9 final size:9
Alignment explanation
Indices: 1272241--1272274 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
1272231 ACAATTAGTC
1272241 CGTTGTCTGT
1 CGTTGTC-GT
1272251 CGTTGTCGT
1 CGTTGTCGT
1272260 CGTTGTCGT
1 CGTTGTCGT
*
1272269 TGTTGT
1 CGTTGT
1272275 AAACTTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.00, C:0.18, G:0.32, T:0.50
Consensus pattern (9 bp):
CGTTGTCGT
Found at i:1272718 original size:166 final size:165
Alignment explanation
Indices: 1272444--1273277 Score: 915
Period size: 166 Copynumber: 5.0 Consensus size: 165
1272434 GGTATTTTTC
* * * *** **
1272444 AAAAATCTTCTTCTCAAAAACTATTTGGCCTGAAAAGCTTAAACTT-GTGTGGAGGCATCCTCAG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTAAAATGGAAACATCCTCAG
* * *
1272508 GTAGTGTAGATTTAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAAGAGTGGG
65 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAA-AGGGGG
*
1272573 ATCAAGTTTTACATAGGAATATGTAGAGAAAATCTTT
129 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* *
1272610 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGAAACATTCTCATG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGAAACATCCTCAGG
*
1272675 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAA-AGGGGGA
**
1272740 TCAAGTTTTACATAGGAATATATAGAGAAAATCTAAA
130 TCAAGTTTTACATAGGAATATATAGAGAAAATCT-TT
** * ** * * * *
1272777 AAAAAAATTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATTCTCAGA
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGAAACATCCTCAGG
* * * * * * *
1272842 TAATGTAGATTCAATTTTGTTCAAAACATAGTCCCTGGTGGTATGGTGGGGCCACAAAGGGGGAA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAAGGGGG-A
** *
1272907 TGGA-TGTTTACATAGGAATATATAGAGAAAATCTGT
130 TCAAGT-TTTACATAGGAATATATAGAGAAAATCTTT
* *
1272943 AAAAATCTTCTTCTCAAAAACTTTTAGGCCAGAAAAGCTCAAACTAAAAT-GAAAGCATCCTCAG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGAAA-CATCCTCAG
* **
1273007 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCTCGGGGGTAGGGTGGGGCCACAATTTGGGG
65 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAA-AGGGGG
1273072 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
129 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * * * *** * ** *
1273109 AAAAATCTTCTTTTTAAAGACTATTTGGCCAGAAAAGCTTAAACTT-GTGTAGAGGCATCCTCGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTAAAATGGAAACATCCTCAG
* ** ** * * *** *
1273173 GTAGTGTAAATTCAAGTTTG--CAAAATCACAGTCCCTAGTGGTAGGGCGGGGCCGTGATGGCGG
65 GTAGTGTAGATTCAAGTTTGTTC-AAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAAGG-GG
** * *
1273236 TTTGAATTTTTACATAGGAATATATAGAGAAAATCTTT
128 GATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
1273274 AAAA
1 AAAA
1273278 TTATCCTGGG
Statistics
Matches: 565, Mismatches: 92, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
164 3 0.01
165 70 0.12
166 347 0.61
167 145 0.26
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (165 bp):
AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAATGGAAACATCCTCAGG
TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAAAGGGGGAT
CAAGTTTTACATAGGAATATATAGAGAAAATCTTT
Found at i:1272939 original size:333 final size:331
Alignment explanation
Indices: 1272451--1273277 Score: 1122
Period size: 333 Copynumber: 2.5 Consensus size: 331
1272441 TTCAAAAATC
*
1272451 TTCTTCTCAAAAACTATTTGGCCTGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGGTAGTGTA
1 TTCTTCTCAAAAACTATTTGGCCAGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGGTAGTGTA
* * * * * * *
1272516 GATTTAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAAGAGTGGGATCAA-GT
66 GATTCAAGTTTGTTCAAAACATAGTCCCTGGTGGTAGGGAGGGGCCACAA-AGGGGGATGAATG-
*
1272580 TTTACATAGGAATATGTAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAA
129 TTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAA
* * *
1272645 AGCTCAAATTAAAATGGAAA-CATTCTCATGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCC
194 AGCTCAAACTAAAAT-GAAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCC
1272709 CCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCT
258 CCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCT
1272774 AAAAAAAAAA
323 -AAAAAAAAA
** * * * * * * *
1272784 TTCTTCTCAAAAACTATCAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATTCTCAGATAATGTA
1 TTCTTCTCAAAAACTATTTGGCCAGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGGTAGTGTA
* * * *
1272849 GATTCAATTTTGTTCAAAACATAGTCCCTGGTGGTATGGTGGGGCCACAAAGGGGGAATGGATGT
66 GATTCAAGTTTGTTCAAAACATAGTCCCTGGTGGTAGGGAGGGGCCACAAAGGGGG-ATGAATGT
* *
1272914 TTACATAGGAATATATAGAGAAAATCTGTAAAAATCTTCTTCTCAAAAACTTTTAGGCCAGAAAA
130 TTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAA
*
1272979 GCTCAAACTAAAATGAAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCTC
195 GCTCAAACTAAAATGAAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCC
* **
1273044 GGGGGTAGGGTGGGGCCACAATTTGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
260 GGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCTAA
**
1273109 AAAAATC
325 AAAAAAA
* * * * *
1273116 TTCTTTTTAAAGACTATTTGGCCAGAAAAGCTTAAACTTGTGTAGAGGCATCCTCGGGTAGTGTA
1 TTCTTCTCAAAAACTATTTGGCCAGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGGTAGTGTA
* * * * *** * ** *
1273181 AATTCAAGTTTG--CAAAATCACAGTCCCTAGTGGTAGGGCGGGGCCGTGATGGCGGTTTGAATT
66 GATTCAAGTTTGTTCAAAA-CATAGTCCCTGGTGGTAGGGAGGGGCCACAAAGG-GGGATGAATG
1273244 TTTACATAGGAATATATAGAGAAAATCTTTAAAA
129 TTTACATAGGAATATATAGAGAAAATCTTTAAAA
1273278 TTATCCTGGG
Statistics
Matches: 427, Mismatches: 62, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
330 5 0.01
331 63 0.15
332 77 0.18
333 281 0.66
334 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (331 bp):
TTCTTCTCAAAAACTATTTGGCCAGAAAAGCTTAAACTTGTGTGGAGGCATCCTCAGGTAGTGTA
GATTCAAGTTTGTTCAAAACATAGTCCCTGGTGGTAGGGAGGGGCCACAAAGGGGGATGAATGTT
TACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAG
CTCAAACTAAAATGAAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCG
GGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCTAAA
AAAAAA
Found at i:1274101 original size:26 final size:26
Alignment explanation
Indices: 1274052--1274103 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1274042 CTTTCTTTAA
**
1274052 ATTTTGCTTTTATTTGGCTTCCTGGT
1 ATTTTGCTTTTATTTGGCCGCCTGGT
1274078 ATTTTGCTTTTATTTGGCCGCCTGGT
1 ATTTTGCTTTTATTTGGCCGCCTGGT
1274104 TTTCTGGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.08, C:0.17, G:0.21, T:0.54
Consensus pattern (26 bp):
ATTTTGCTTTTATTTGGCCGCCTGGT
Found at i:1274140 original size:22 final size:21
Alignment explanation
Indices: 1274110--1274162 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
1274100 TGGTTTTCTG
*
1274110 GGGGGGGGGGGTGGCATTTTTT
1 GGGGAGGGGGGTGG-ATTTTTT
* *
1274132 GGGGAGGGGGTTGGTTTTTTT
1 GGGGAGGGGGGTGGATTTTTT
1274153 GGAGGAGGGG
1 GG-GGAGGGG
1274163 TCCTCCCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.08, C:0.02, G:0.60, T:0.30
Consensus pattern (21 bp):
GGGGAGGGGGGTGGATTTTTT
Found at i:1276799 original size:2 final size:2
Alignment explanation
Indices: 1276792--1276823 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1276782 GTACGCCGAT
1276792 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1276824 NTTTGTTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1294397 original size:17 final size:16
Alignment explanation
Indices: 1294372--1294406 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
1294362 CTGGCGTGCG
1294372 ACCAGTTCTCGCCGAGT
1 ACCAGTTCTCGCC-AGT
*
1294389 ACCATTTCTCGCCAGT
1 ACCAGTTCTCGCCAGT
1294405 AC
1 AC
1294407 ATTGTGACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.20, C:0.37, G:0.17, T:0.26
Consensus pattern (16 bp):
ACCAGTTCTCGCCAGT
Found at i:1294490 original size:17 final size:16
Alignment explanation
Indices: 1294463--1294497 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
1294453 ACGTCACAAT
1294463 GTACTGGCGAGAAATG
1 GTACTGGCGAGAAATG
*
1294479 GTACTCGGCGAGAACTG
1 GTACT-GGCGAGAAATG
1294496 GT
1 GT
1294498 CGCGCGCCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.17, G:0.37, T:0.20
Consensus pattern (16 bp):
GTACTGGCGAGAAATG
Found at i:1298807 original size:5 final size:5
Alignment explanation
Indices: 1298797--1298821 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1298787 AAAGTTGACA
1298797 AGGAT AGGAT AGGAT AGGAT AGGAT
1 AGGAT AGGAT AGGAT AGGAT AGGAT
1298822 GCACGATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
AGGAT
Found at i:1298866 original size:5 final size:5
Alignment explanation
Indices: 1298856--1298891 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
1298846 AAATTAAGTT
*
1298856 CTATC CTATC CTATC CAATC CTAT- CTATC CTATC CT
1 CTATC CTATC CTATC CTATC CTATC CTATC CTATC CT
1298892 GCATCCTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (5 bp):
CTATC
Found at i:1308480 original size:16 final size:16
Alignment explanation
Indices: 1308461--1308505 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
1308451 CCCGTGCTGT
*
1308461 AAGAGCCGGAGCTACG
1 AAGAGCCGGAGCCACG
*
1308477 AAGAGCAGGAGCCACG
1 AAGAGCCGGAGCCACG
1308493 AAGAGCCGGAGCC
1 AAGAGCCGGAGCC
1308506 GCGCTGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.38, T:0.02
Consensus pattern (16 bp):
AAGAGCCGGAGCCACG
Found at i:1308567 original size:14 final size:15
Alignment explanation
Indices: 1308513--1308568 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
1308503 GCCGCGCTGA
1308513 AAGAGCCGGAGCCAT
1 AAGAGCCGGAGCCAT
* * * *
1308528 TATAGCC-GTGCTAT
1 AAGAGCCGGAGCCAT
1308542 AAGAGCCGGAGCCAT
1 AAGAGCCGGAGCCAT
1308557 AAGAGCC-GAGCC
1 AAGAGCCGGAGCC
1308569 TGCATATAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
14 15 0.47
15 17 0.53
ACGTcount: A:0.30, C:0.27, G:0.30, T:0.12
Consensus pattern (15 bp):
AAGAGCCGGAGCCAT
Found at i:1310238 original size:147 final size:147
Alignment explanation
Indices: 1309988--1310255 Score: 371
Period size: 147 Copynumber: 1.8 Consensus size: 147
1309978 GAGTACTTTT
* *
1309988 TATGCAATATTTTGCCAAAAAATGACTAAGTTCAATTTAAGCTGTTTTTTTTCCATAAATAAATC
1 TATGCAATATTTTGCCAAAAAATGACCAAGTTCAA--TAAGCTGTTTGTTTTCCATAAAT-AATC
* *
1310053 AGAAATCAAACTCCTAGCAATATACACACCTCTAATATAAGAACAATTGATTTGCAGGAGTTATC
63 AGAAATCAAAATCCTAGCAATATACACACCTCTAATATAAGAACAATTGATCTGCAGGAGTTATC
1310118 CGTACAATCGGGGTACCCTA
128 CGTACAATCGGGGTACCCTA
*
1310138 TATGCAATATTTTGCCAAAATATGACCAAGTTCAA-AAGCTGGTATTGTTTT-CATAAACT-ATC
1 TATGCAATATTTTGCCAAAAAATGACCAAGTTCAATAAGCT-GT-TTGTTTTCCATAAA-TAATC
* * * * *
1310200 GGAAATCAAAATCCTAGCAATATGCACACCTCTGATATATGAACATTTGATCTGCA
63 AGAAATCAAAATCCTAGCAATATACACACCTCTAATATAAGAACAATTGATCTGCA
1310256 AAAGGCCAAC
Statistics
Matches: 105, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
147 57 0.54
148 8 0.08
149 7 0.07
150 33 0.31
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (147 bp):
TATGCAATATTTTGCCAAAAAATGACCAAGTTCAATAAGCTGTTTGTTTTCCATAAATAATCAGA
AATCAAAATCCTAGCAATATACACACCTCTAATATAAGAACAATTGATCTGCAGGAGTTATCCGT
ACAATCGGGGTACCCTA
Found at i:1310413 original size:180 final size:178
Alignment explanation
Indices: 1310110--1310675 Score: 746
Period size: 180 Copynumber: 3.2 Consensus size: 178
1310100 TGATTTGCAG
* *
1310110 GAGTTATCCGTACAATCG-GGGTACCCTATATGCAATATTTTGCCAAAATATGACCAAGTTCAAA
1 GAGTTATCCGTACAAT-GAGGGTACCCTATATGCAATATTTTGCCAAAAAATGA-TAAGTTCAAA
* *
1310174 AGCTGGTATTGTTTTCATAAACTATCGGAAATCAAAATCCTAGCAATATGCACACCTCTGATATA
64 AGCTGGTATTATTTTCATAAATTATCGGAAATCAAAATCCTAGCAATATGCACACCTCTGATATA
* ** * *
1310239 TGAACATTTGATCTGCAAAAGGCCAACTTTCTATTTTGAGAACTGTAGGA
129 TGTACATTTGATCTGCAAAAGAACAACTTTCTATCTTGAAAACTGTAGGA
1310289 GAAGTTATCCGTACAATGAGGGTACCCTATATGCAATATTTTGCCAAAAAATGATAAAGTTCAAA
1 G-AGTTATCCGTACAATGAGGGTACCCTATATGCAATATTTTGCCAAAAAATGAT-AAGTTCAAA
*
1310354 AGCTGGTATTATTTTCATAAATTATTGGAAATCAAAATCCTAGCAATAAT-CACACCTCTGATAT
64 AGCTGGTATTATTTTCATAAATTATCGGAAATCAAAATCCTAGCAAT-ATGCACACCTCTGATAT
* *
1310418 AAGTACAATAT-ATCTGCAAAAGAACAAC-TTCGTATCTTGAAAACTGTAGGA
128 ATGTAC-ATTTGATCTGCAAAAGAACAACTTTC-TATCTTGAAAACTGTAGGA
* * * * * * *
1310469 TGAGTTATCCGTACAACGAGGGTATCTTATATGCAATATATTACCAACAAATGACTATGTTCAAA
1 -GAGTTATCCGTACAATGAGGGTACCCTATATGCAATATTTTGCCAAAAAATGA-TAAGTTCAAA
* * * *
1310534 AGCTGGTATTTTTTTCATTAATTATCGGAAATCAAAATCCTAGCAATATGCACACTTCCG-TATA
64 AGCTGGTATTATTTTCATAAATTATCGGAAATCAAAATCCTAGCAATATGCACACCTCTGATATA
* * **
1310598 TGTACAATTGATCTGCAAAAGAACAAGTGCCTATCTTGAAAACTGTAGGA
129 TGTACATTTGATCTGCAAAAGAACAACTTTCTATCTTGAAAACTGTAGGA
* *
1310648 GGAGTTATCCGTACAATAAGGGTTCCCT
1 -GAGTTATCCGTACAATGAGGGTACCCT
1310676 TTTGGCAGCT
Statistics
Matches: 340, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
178 2 0.01
179 72 0.21
180 259 0.76
181 7 0.02
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (178 bp):
GAGTTATCCGTACAATGAGGGTACCCTATATGCAATATTTTGCCAAAAAATGATAAGTTCAAAAG
CTGGTATTATTTTCATAAATTATCGGAAATCAAAATCCTAGCAATATGCACACCTCTGATATATG
TACATTTGATCTGCAAAAGAACAACTTTCTATCTTGAAAACTGTAGGA
Found at i:1317505 original size:11 final size:11
Alignment explanation
Indices: 1317489--1317533 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
1317479 AGAAAATTTG
1317489 TCAAAATTTCA
1 TCAAAATTTCA
*
1317500 TCAAAACTTCA
1 TCAAAATTTCA
1317511 TCAAAA---CA
1 TCAAAATTTCA
1317519 TC-AAATTTCA
1 TCAAAATTTCA
1317529 TCAAA
1 TCAAA
1317534 CAAAATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
7 3 0.10
8 4 0.14
10 4 0.14
11 18 0.62
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (11 bp):
TCAAAATTTCA
Found at i:1318336 original size:21 final size:21
Alignment explanation
Indices: 1318307--1318405 Score: 99
Period size: 21 Copynumber: 4.7 Consensus size: 21
1318297 TACAAGATAA
*
1318307 ACGAGAGGATAGGATTCACGC
1 ACGATAGGATAGGATTCACGC
*
1318328 ACGATAGGATAGGATTAACGC
1 ACGATAGGATAGGATTCACGC
* * * *
1318349 ACGATAGAACAGTATACACGC
1 ACGATAGGATAGGATTCACGC
* * **
1318370 ACGATATGATAGGATTGATAC
1 ACGATAGGATAGGATTCACGC
*
1318391 ACGATAGGAAAGGAT
1 ACGATAGGATAGGAT
1318406 AAACGATGTT
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.18
Consensus pattern (21 bp):
ACGATAGGATAGGATTCACGC
Found at i:1321565 original size:21 final size:21
Alignment explanation
Indices: 1321531--1321664 Score: 110
Period size: 21 Copynumber: 6.4 Consensus size: 21
1321521 CGATAAACCT
*
1321531 GATAGGATTCACGCACGATAG
1 GATAGGATTAACGCACGATAG
*
1321552 GATAGCATTAACGCACGATAG
1 GATAGGATTAACGCACGATAG
* * * *
1321573 AACAGTA-TACACGCACGAAAG
1 GATAGGATTA-ACGCACGATAG
1321594 GATAGGATTAACGCACGATAG
1 GATAGGATTAACGCACGATAG
* * * *
1321615 AACAGTA-TACACGCACGATAC
1 GATAGGATTA-ACGCACGATAG
* ** *
1321636 GATAGGATTGATACACGATAC
1 GATAGGATTAACGCACGATAG
1321657 GATAGGAT
1 GATAGGAT
1321665 AGGATGGTAA
Statistics
Matches: 89, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
20 4 0.04
21 82 0.92
22 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.18
Consensus pattern (21 bp):
GATAGGATTAACGCACGATAG
Found at i:1321655 original size:42 final size:42
Alignment explanation
Indices: 1321540--1321644 Score: 183
Period size: 42 Copynumber: 2.5 Consensus size: 42
1321530 TGATAGGATT
*
1321540 CACGCACGATAGGATAGCATTAACGCACGATAGAACAGTATA
1 CACGCACGATAGGATAGGATTAACGCACGATAGAACAGTATA
*
1321582 CACGCACGAAAGGATAGGATTAACGCACGATAGAACAGTATA
1 CACGCACGATAGGATAGGATTAACGCACGATAGAACAGTATA
*
1321624 CACGCACGATACGATAGGATT
1 CACGCACGATAGGATAGGATT
1321645 GATACACGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (42 bp):
CACGCACGATAGGATAGGATTAACGCACGATAGAACAGTATA
Found at i:1336181 original size:202 final size:201
Alignment explanation
Indices: 1335835--1336227 Score: 777
Period size: 202 Copynumber: 2.0 Consensus size: 201
1335825 NNNNNNNNNN
1335835 TGAGAAATTGTATTCACATCTGCGGCACTGTCAAGTTGAAATCTAATGTCACACTCATTGATACG
1 TGAGAAATTGTATTCACATCTGCGGCACTGTCAAGTTGAAATCTAATGTCACACTCATTGATACG
1335900 CATTATTGCAGTCACTTCTTTGCCACCAGAACTAACAGCTTTCAACCATTGGTCCTCGTTGAATT
66 CATTATTGCAGTCACTTCTTTGCCACCAGAACTAACAGCTTTCAACCATTGGTCCTCGTTGAATT
1335965 CTTCTTCCTGACTGACTGAATGTATCTTCTTGCACTTTGCTTTGAAGTGATTCCTTCCACCNGAC
131 CTTCTTCCTGACTGACTGAATGTATCTTCTTGCACTTTGCTTTGAAGTGATTCCTTCCACC-GAC
1336030 ATAACGC
195 ATAACGC
1336037 TGAGAAATTGTATTCACATCTGCGGCACTGTCAAGTTGAAATCTAATGTCACACTCATTGATACG
1 TGAGAAATTGTATTCACATCTGCGGCACTGTCAAGTTGAAATCTAATGTCACACTCATTGATACG
1336102 CATTATTGCAGTCACTTCTTTGCCACCAGAACTAACAGCTTTCAACCATTGGTCCTCGTTGAATT
66 CATTATTGCAGTCACTTCTTTGCCACCAGAACTAACAGCTTTCAACCATTGGTCCTCGTTGAATT
1336167 CTTCTTCCTGACTGACTGAATGTATCTTCTTGCACTTTGCTTTGAAGTGATTCCTTCCACC
131 CTTCTTCCTGACTGACTGAATGTATCTTCTTGCACTTTGCTTTGAAGTGATTCCTTCCACC
1336228 ACACTGTTCA
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 191 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (201 bp):
TGAGAAATTGTATTCACATCTGCGGCACTGTCAAGTTGAAATCTAATGTCACACTCATTGATACG
CATTATTGCAGTCACTTCTTTGCCACCAGAACTAACAGCTTTCAACCATTGGTCCTCGTTGAATT
CTTCTTCCTGACTGACTGAATGTATCTTCTTGCACTTTGCTTTGAAGTGATTCCTTCCACCGACA
TAACGC
Found at i:1338805 original size:21 final size:20
Alignment explanation
Indices: 1338764--1338805 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1338754 GTGTATATCG
* *
1338764 TTCTATCGTGCTTAGTCCTA
1 TTCTATCGTGCATAATCCTA
1338784 TTCTATCGTGCGATAATCCTA
1 TTCTATCGTGC-ATAATCCTA
1338805 T
1 T
1338806 CAGGTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (20 bp):
TTCTATCGTGCATAATCCTA
Found at i:1341590 original size:2 final size:2
Alignment explanation
Indices: 1341583--1341616 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1341573 AACGGGGATT
1341583 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1341617 TCTTCATTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1342326 original size:13 final size:13
Alignment explanation
Indices: 1342310--1342334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1342300 GAAAATGTCC
1342310 AAAAAAAATATAA
1 AAAAAAAATATAA
1342323 AAAAAAAATATA
1 AAAAAAAATATA
1342335 TTCAATCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAATATAA
Found at i:1343766 original size:13 final size:13
Alignment explanation
Indices: 1343748--1343776 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1343738 GGGGTTTTAC
1343748 CAAAAAACAACAA
1 CAAAAAACAACAA
1343761 CAAAAAACAACAA
1 CAAAAAACAACAA
1343774 CAA
1 CAA
1343777 CAAGGGGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAAAACAACAA
Found at i:1343774 original size:16 final size:15
Alignment explanation
Indices: 1343749--1343779 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
1343739 GGGTTTTACC
1343749 AAAAAACAACAACAA
1 AAAAAACAACAACAA
1343764 AAAACAACAACAACAA
1 AAAA-AACAACAACAA
1343780 GGGGGTTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAACAACAACAA
Found at i:1347136 original size:15 final size:16
Alignment explanation
Indices: 1347106--1347154 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
1347096 AATACAGCTT
* *
1347106 ACTCCACTTATATTGA
1 ACTCCGCTTATTTTGA
1347122 ACT-CGCTTATTTTGAA
1 ACTCCGCTTATTTTG-A
*
1347138 ATTCCGCTTATTTTGA
1 ACTCCGCTTATTTTGA
1347154 A
1 A
1347155 ATAGAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 9 0.32
16 8 0.29
17 11 0.39
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (16 bp):
ACTCCGCTTATTTTGA
Found at i:1352724 original size:14 final size:14
Alignment explanation
Indices: 1352707--1352736 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1352697 CCATGTTTCT
*
1352707 GAGTGCATGCAAAG
1 GAGTGAATGCAAAG
1352721 GAGTGAATGCAAAG
1 GAGTGAATGCAAAG
1352735 GA
1 GA
1352737 AATCAAGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.10, G:0.37, T:0.13
Consensus pattern (14 bp):
GAGTGAATGCAAAG
Found at i:1360952 original size:14 final size:13
Alignment explanation
Indices: 1360931--1360971 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
1360921 CCCCCCCAAA
1360931 AAAAAAAAACAAC
1 AAAAAAAAACAAC
*
1360944 AACAAAAAACAAC
1 AAAAAAAAACAAC
1360957 AAAAACAAAACAAC
1 AAAAA-AAAACAAC
1360971 A
1 A
1360972 GGCACTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACAAC
Found at i:1360952 original size:16 final size:16
Alignment explanation
Indices: 1360931--1360966 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1360921 CCCCCCCAAA
*
1360931 AAAAAAAAACAACAAC
1 AAAAAAAAACAAAAAC
*
1360947 AAAAAACAACAAAAAC
1 AAAAAAAAACAAAAAC
1360963 AAAA
1 AAAA
1360967 CAACAGGCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAACAAAAAC
Found at i:1364467 original size:13 final size:14
Alignment explanation
Indices: 1364449--1364477 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
1364439 ATTTGGGATG
1364449 GAAAGATGCT-GGT
1 GAAAGATGCTCGGT
1364462 GAAAGATGCTCGGT
1 GAAAGATGCTCGGT
1364476 GA
1 GA
1364478 CAGGAAAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.10, G:0.38, T:0.21
Consensus pattern (14 bp):
GAAAGATGCTCGGT
Found at i:1380239 original size:168 final size:171
Alignment explanation
Indices: 1379960--1380387 Score: 535
Period size: 173 Copynumber: 2.5 Consensus size: 171
1379950 ATCTTTTGAT
* * * * * *
1379960 ACTATATGGCCATATTGGCCACACCTTACAGCCGGAATCCCTGACCCAGGTGTCATGAGTTTCAC
1 ACTATATGGCCATATTGGCCACACCCTAGAGCCTGAACCCCTGACCCAGGGGCCATGA-TTTCAC
* * *
1380025 AATTTTGGTAGAGGGCTTCCTGGACATCATACCCATGCAATTAG-TTTTTAACCAATATATATGA
65 AATTTTGGTAGAGGGCTTCATGGACATCATAACCATGCAATTAGTTTTTTAACAAATATATATG-
* * **
1380089 GG-GT-AGA-GAA-GAAGATTTTCTATGATTTTGTACATTTTC
129 GGAGTAAGATGAATGAAGATTTTCAAAGATTTAATACATTTTC
* * *
1380128 ACTATATAGCCATATTGGCCA-ATCCCTAGAGCCTGAACCCCTGACCAAGGGGCCATGGATTACA
1 ACTATATGGCCATATTGGCCACA-CCCTAGAGCCTGAACCCCTGACCCAGGGGCCAT-GATTTCA
* * * *
1380192 TAATTTTGGTAGAGGGCTTCATGGACATCATAACCATGTATTTAGTTTTTTTACAAATATATATG
64 CAATTTTGGTAGAGGGCTTCATGGACATCATAACCATGCAATTAGTTTTTTAACAAATATATATG
* *
1380257 GGAGTAGAGATGAATTAAGATTTTCAAAGATTTAATACATTTTT
129 GGAGTA-AGATGAATGAAGATTTTCAAAGATTTAATACATTTTC
* *
1380301 ACTTTATGGCCATATTGGCCACACCCTAGAGCCTGAACCCCTGACCCAGGGGCCATTCATTTCAC
1 ACTATATGGCCATATTGGCCACACCCTAGAGCCTGAACCCCTGACCCAGGGGCCA-TGATTTCAC
*
1380366 AATTTTGGCAGAGGGCTTCATG
65 AATTTTGGTAGAGGGCTTCATG
1380388 AACAGTCTTT
Statistics
Matches: 221, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
167 1 0.00
168 92 0.42
169 21 0.10
171 3 0.01
172 3 0.01
173 99 0.45
174 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (171 bp):
ACTATATGGCCATATTGGCCACACCCTAGAGCCTGAACCCCTGACCCAGGGGCCATGATTTCACA
ATTTTGGTAGAGGGCTTCATGGACATCATAACCATGCAATTAGTTTTTTAACAAATATATATGGG
AGTAAGATGAATGAAGATTTTCAAAGATTTAATACATTTTC
Found at i:1382747 original size:21 final size:21
Alignment explanation
Indices: 1382721--1382785 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
1382711 CTAAAACGCA
*
1382721 TGCAACGAATGCGAGAGCTCG
1 TGCAACGTATGCGAGAGCTCG
* * *
1382742 TGCAACGTACGCGAGAGTTAG
1 TGCAACGTATGCGAGAGCTCG
* *
1382763 TGCAACGTGTGAGAGAGCTCG
1 TGCAACGTATGCGAGAGCTCG
1382784 TG
1 TG
1382786 AGAATCTAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.26, C:0.20, G:0.35, T:0.18
Consensus pattern (21 bp):
TGCAACGTATGCGAGAGCTCG
Found at i:1382878 original size:32 final size:32
Alignment explanation
Indices: 1382837--1382908 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
1382827 CTAGCCATCT
1382837 TTCCCCCCGGAAAAATAGCTATATAGCAGTTC
1 TTCCCCCCGGAAAAATAGCTATATAGCAGTTC
* *
1382869 TTCCCCCCGGAAAAATGGCTATATAGCAGTTT
1 TTCCCCCCGGAAAAATAGCTATATAGCAGTTC
1382901 TTCCCCCC
1 TTCCCCCC
1382909 ACGGAAAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (32 bp):
TTCCCCCCGGAAAAATAGCTATATAGCAGTTC
Found at i:1382925 original size:34 final size:32
Alignment explanation
Indices: 1382837--1382928 Score: 114
Period size: 32 Copynumber: 2.8 Consensus size: 32
1382827 CTAGCCATCT
1382837 TTCCCCCCGGAAAAAT-AGCTATATAGCAGTTC
1 TTCCCCCCGGAAAAATGA-CTATATAGCAGTTC
* *
1382869 TTCCCCCCGGAAAAATGGCTATATAGCAGTTT
1 TTCCCCCCGGAAAAATGACTATATAGCAGTTC
**
1382901 TTCCCCCCACGGAAAGCTGACTATATAG
1 TT-CCCCC-CGGAAAAATGACTATATAG
1382929 TGGGCTTTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
32 31 0.60
33 5 0.10
34 16 0.31
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (32 bp):
TTCCCCCCGGAAAAATGACTATATAGCAGTTC
Found at i:1391737 original size:45 final size:42
Alignment explanation
Indices: 1391611--1391742 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 42
1391601 GGCAATTTTT
* **
1391611 AATTTTATTTTTGCCGATTTAGTTGGTCTCCGAATTTGGAGAC
1 AATTTTATTTTTGCCGATTTGGCAGGTCTCCG-ATTTGGAGAC
** *
1391654 AATTTTATTTTTGCTAATTTGGCAAGG-CTCCGATTTGGAGGC
1 AATTTTATTTTTGCCGATTTGGC-AGGTCTCCGATTTGGAGAC
*
1391696 AATTTTTAATTTTTGTCCGATTTGGCAGGTCTCCGAGTTGGAGAC
1 AA-TTTT-ATTTTTG-CCGATTTGGCAGGTCTCCGATTTGGAGAC
1391741 AA
1 AA
1391743 GTTTGAATGG
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 11 0.15
43 28 0.38
44 12 0.16
45 23 0.31
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (42 bp):
AATTTTATTTTTGCCGATTTGGCAGGTCTCCGATTTGGAGAC
Found at i:1391756 original size:28 final size:28
Alignment explanation
Indices: 1391723--1391777 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
1391713 CGATTTGGCA
*
1391723 GGTCTCCGAGTTGGAGACAAGTTTGAAT
1 GGTCTCCAAGTTGGAGACAAGTTTGAAT
* * *
1391751 GGTCTCCAATTTGGGGGCAAGTTTGAA
1 GGTCTCCAAGTTGGAGACAAGTTTGAA
1391778 AATTTTTGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.29
Consensus pattern (28 bp):
GGTCTCCAAGTTGGAGACAAGTTTGAAT
Found at i:1396295 original size:17 final size:17
Alignment explanation
Indices: 1396273--1396313 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
1396263 ATTGTAAAAA
1396273 CTTTTCTAAACCAATTG
1 CTTTTCTAAACCAATTG
1396290 CTTTTCTAAACCAATTG
1 CTTTTCTAAACCAATTG
1396307 CTTTTCT
1 CTTTTCT
1396314 TTCATGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.46
Consensus pattern (17 bp):
CTTTTCTAAACCAATTG
Found at i:1402452 original size:43 final size:43
Alignment explanation
Indices: 1402391--1402510 Score: 195
Period size: 43 Copynumber: 2.8 Consensus size: 43
1402381 ATAGAGTAAA
* * * *
1402391 ATTATTATAGGAAGAGTGAATGTACTTCGACATATTATGACCC
1 ATTATTTTAGGAAAAGTGAATGTACTTTGACATATTATGACAC
*
1402434 ATTATTTTAGGAAAAGTGAATGTACTTTGACATATTTTGACAC
1 ATTATTTTAGGAAAAGTGAATGTACTTTGACATATTATGACAC
1402477 ATTATTTTAGGAAAAGTGAATGTACTTTGACATA
1 ATTATTTTAGGAAAAGTGAATGTACTTTGACATA
1402511 CTGTGATATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (43 bp):
ATTATTTTAGGAAAAGTGAATGTACTTTGACATATTATGACAC
Found at i:1407602 original size:11 final size:11
Alignment explanation
Indices: 1407586--1407618 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1407576 GGAGATTTGA
1407586 ATTATCCAAAT
1 ATTATCCAAAT
1407597 ATTATCC-AA-
1 ATTATCCAAAT
1407606 ATTATCCAAAT
1 ATTATCCAAAT
1407617 AT
1 AT
1407619 GATATCGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 7 0.35
10 4 0.20
11 9 0.45
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (11 bp):
ATTATCCAAAT
Found at i:1416401 original size:21 final size:21
Alignment explanation
Indices: 1416377--1416426 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
1416367 GCCAAGACAA
*
1416377 TAGCATCTTACCAATAACTTC
1 TAGCATCTTACCAATAACCTC
*
1416398 TAGCATCTTGCCAATAACCTC
1 TAGCATCTTACCAATAACCTC
*
1416419 TATCATCT
1 TAGCATCT
1416427 GAGGTCATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (21 bp):
TAGCATCTTACCAATAACCTC
Found at i:1417719 original size:34 final size:34
Alignment explanation
Indices: 1417681--1417749 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 34
1417671 CTATCAATGA
*
1417681 AACATCTCT-CTCTTTCTTTTACTGTTAATTTATT
1 AACATCTCTAC-CTTTCTTTAACTGTTAATTTATT
*
1417715 AACATTTCTACCTTTCTTTAACTGTTAATTTATT
1 AACATCTCTACCTTTCTTTAACTGTTAATTTATT
1417749 A
1 A
1417750 TGTCAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.03, T:0.54
Consensus pattern (34 bp):
AACATCTCTACCTTTCTTTAACTGTTAATTTATT
Found at i:1418062 original size:2 final size:2
Alignment explanation
Indices: 1418055--1418081 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1418045 TCACATGTTT
1418055 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1418082 GACTAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1421687 original size:28 final size:28
Alignment explanation
Indices: 1421654--1421710 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
1421644 TTTTCGAGAT
*
1421654 AATCATTTCAGAGATTATAAATCAATAC
1 AATCATTTCAGAGATAATAAATCAATAC
1421682 AATCATTTCAGAGATAATAAATCAATAC
1 AATCATTTCAGAGATAATAAATCAATAC
1421710 A
1 A
1421711 CCGCCAGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (28 bp):
AATCATTTCAGAGATAATAAATCAATAC
Found at i:1422828 original size:131 final size:131
Alignment explanation
Indices: 1422594--1422850 Score: 471
Period size: 131 Copynumber: 2.0 Consensus size: 131
1422584 CATCGCAGTT
*
1422594 TATGGTATTGTTAAAATGTTTCTAGTTGGAGAAACTTGCATTTTAGGAGAAGGTTGATAGGCAAA
1 TATGGTATTGTTAAAATGTTTCTAGTTGGAGAAACTTGCATTTTAAGAGAAGGTTGATAGGCAAA
* *
1422659 ACAAAGTCTACGGTAGCCAAATCAAGAATTATACATAACAGCACATTCTGTGATGTTTGAAAAGT
66 ACAAAGTATACAGTAGCCAAATCAAGAATTATACATAACAGCACATTCTGTGATGTTTGAAAAGT
1422724 C
131 C
1422725 TATGGTATTGTTAAAATGTTTCTAGTTGGAGAAACTTGCATTTTAAGAGAAGGTTGATAGGCAAA
1 TATGGTATTGTTAAAATGTTTCTAGTTGGAGAAACTTGCATTTTAAGAGAAGGTTGATAGGCAAA
1422790 ACAAAGTATACAGTAGCCAAATCAATG-ATTATACATAACAGCACATTCTGTGATGTTTGAA
66 ACAAAGTATACAGTAGCCAAATCAA-GAATTATACATAACAGCACATTCTGTGATGTTTGAA
1422851 TGGTGCTCCT
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
131 121 0.99
132 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (131 bp):
TATGGTATTGTTAAAATGTTTCTAGTTGGAGAAACTTGCATTTTAAGAGAAGGTTGATAGGCAAA
ACAAAGTATACAGTAGCCAAATCAAGAATTATACATAACAGCACATTCTGTGATGTTTGAAAAGT
C
Found at i:1432323 original size:11 final size:12
Alignment explanation
Indices: 1432295--1432320 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1432285 GTCTCGATTG
1432295 TTTCAATATTCT
1 TTTCAATATTCT
1432307 TTTCAATATTCT
1 TTTCAATATTCT
1432319 TT
1 TT
1432321 CAAACATCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCAATATTCT
Found at i:1450297 original size:20 final size:20
Alignment explanation
Indices: 1450268--1450315 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
1450258 CCAGGACGGT
1450268 GGGAAATACTGGTAATTCCC
1 GGGAAATACTGGTAATTCCC
* * *
1450288 GGGAATTACTGGTATTTCCT
1 GGGAAATACTGGTAATTCCC
1450308 GGGAAATA
1 GGGAAATA
1450316 TTGGGAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (20 bp):
GGGAAATACTGGTAATTCCC
Found at i:1455823 original size:1 final size:1
Alignment explanation
Indices: 1455819--1455844 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
1455809 ACCCCCACAT
1455819 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
1455845 ACACACAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:1462886 original size:14 final size:14
Alignment explanation
Indices: 1462869--1462910 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
1462859 CACATTTCTA
*
1462869 AATATGCAATCATG
1 AATATACAATCATG
*
1462883 AATATACAATTATG
1 AATATACAATCATG
1462897 AATATACAATCATG
1 AATATACAATCATG
1462911 TGAATTTGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (14 bp):
AATATACAATCATG
Found at i:1462900 original size:28 final size:28
Alignment explanation
Indices: 1462850--1462910 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
1462840 TGATTCCCAG
* * *
1462850 TCATGAATACACATTTCTAAATATGCAA
1 TCATGAATACACAATTATAAATATACAA
* *
1462878 TCATGAATATACAATTATGAATATACAA
1 TCATGAATACACAATTATAAATATACAA
1462906 TCATG
1 TCATG
1462911 TGAATTTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (28 bp):
TCATGAATACACAATTATAAATATACAA
Found at i:1463386 original size:17 final size:16
Alignment explanation
Indices: 1463355--1463400 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
1463345 ATAACAGAGG
*
1463355 AAGAAAGAGAAAAGAA
1 AAGAAAGAAAAAAGAA
1463371 AAGAATAGAAAAAAGAA
1 AAGAA-AGAAAAAAGAA
1463388 AAGCAAAGAAAAA
1 AAG-AAAGAAAAA
1463401 GGTACCTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 5 0.19
17 20 0.74
18 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (16 bp):
AAGAAAGAAAAAAGAA
Found at i:1479762 original size:27 final size:27
Alignment explanation
Indices: 1479724--1479905 Score: 301
Period size: 27 Copynumber: 6.7 Consensus size: 27
1479714 ATAAACAACT
*
1479724 CATGGATACGACAACACATCGATAGTC
1 CATGGATATGACAACACATCGATAGTC
*
1479751 CATGGATACGACAACACATCGATAGTC
1 CATGGATATGACAACACATCGATAGTC
*
1479778 CATGGATATGACAACACATCGATATTC
1 CATGGATATGACAACACATCGATAGTC
1479805 CATGGATATGACAACACATCGATAGTC
1 CATGGATATGACAACACATCGATAGTC
*
1479832 CATGGATATGCCAACACATCGATAGTC
1 CATGGATATGACAACACATCGATAGTC
* *
1479859 CGTGGATATGACAACACATCGATATTC
1 CATGGATATGACAACACATCGATAGTC
*
1479886 CATGGATACGACAACACATC
1 CATGGATATGACAACACATC
1479906 ACACTGATAC
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (27 bp):
CATGGATATGACAACACATCGATAGTC
Found at i:1489286 original size:421 final size:420
Alignment explanation
Indices: 1488502--1489342 Score: 1610
Period size: 421 Copynumber: 2.0 Consensus size: 420
1488492 TCGAACATCG
1488502 TCTGAACTTGTAGATAAATCATTAACGTTTGTTAAATAATCGGCATTGTTCTTGATTTCAGGACT
1 TCTGAACTTGTAGATAAATCATTAACGTTTGTTAAATAATCGGCATTGTTCTTGATTTCAGGACT
*
1488567 CGAGGTGTTGTTTCTAAGAGCAGCCAACATAATGTTGTTATGGCGTCGTTTGAAGGCCTGCTTCA
66 CGAGGTGTTGTTTCTAAGAGCAGCCAACATAATGTTGTTATGGCGTCGTTTGAAAGCCTGCTTCA
*
1488632 TTTCGGGGTCAGAACTTCTCCGCTGGTACTGAGTTCGCGGACCCAGTCTATGGACCTCGGCCGTC
131 TTTCGGGGTCAGAACTTCTCCGCTGATACTGAGTTCGCGGACCCAGTCTATGGACCTCGGCCGTC
*
1488697 ACGTGCATTGTGCTCTCACTAGGAGCCGGCGATCGACTACGCGATGGGTCTCTCTCACACAGGCT
196 ACGTGCATCGTGCTCTCACTAGGAGCCGGCGATCGACTACGCGATGGGTCTCTCTCACACAGGCT
* *
1488762 TCCCACAGAATGACGTATCGGATCGTGGAATGTCACACACCGCGGTCCACTCCGTCTATGTCGAT
261 CCCCACAGAATGACGTATCGGATCGTGAAATGTCACACACCGCGGTCCACTCCGTCTATGTCGAT
1488827 TTCTGCGCACGATGACGTCACTGGGGAAGCCATTTTCAATGCTGTCTTCATGGACCGGGGCTAGC
326 TTCTGCGCACGATGACGTCACTGGGGAAGCCATTTTCAATGCTGTCTTCATGGACCGGGGCTAGC
1488892 ACTGTCCCATAGCGGTCATCCTCGGACGAC
391 ACTGTCCCATAGCGGTCATCCTCGGACGAC
1488922 NTCTGAACTTGTAGATAAATCATTAACGTTTGTTAAATAATCGGCATTGTTCTTGATTTCAGGAC
1 -TCTGAACTTGTAGATAAATCATTAACGTTTGTTAAATAATCGGCATTGTTCTTGATTTCAGGAC
1488987 TCGAGGTGTTGTTTCTAAGAGCAGCCAACATAATGTTGTTATGGCGTCGTTTGAAAGCCTGCTTC
65 TCGAGGTGTTGTTTCTAAGAGCAGCCAACATAATGTTGTTATGGCGTCGTTTGAAAGCCTGCTTC
1489052 ATTTCGGGGTCAGAACTTCTCCGCTGATACTGAGTTCGCGGACCCAGTCTATGGACCTCGGCCGT
130 ATTTCGGGGTCAGAACTTCTCCGCTGATACTGAGTTCGCGGACCCAGTCTATGGACCTCGGCCGT
*
1489117 CACGTGCATCGTGCTCTCACTAGGAGCCGGCGATCGACTACGTGATGGGTCTCTCTCACACAGGC
195 CACGTGCATCGTGCTCTCACTAGGAGCCGGCGATCGACTACGCGATGGGTCTCTCTCACACAGGC
1489182 TCCCCACAGAATGACGTATCGGATCGTGAAATGTCACACACCGCGGTCCACTCCGTCTATGTCGA
260 TCCCCACAGAATGACGTATCGGATCGTGAAATGTCACACACCGCGGTCCACTCCGTCTATGTCGA
*
1489247 TTTCTGCGCACGATGACGTCACTGGGGAAGCCGTTTTCAATGCTGTCTTCATGGACCGGGGCTAG
325 TTTCTGCGCACGATGACGTCACTGGGGAAGCCATTTTCAATGCTGTCTTCATGGACCGGGGCTAG
1489312 CACTGTCCCATAGCGGTCATCCTCGGACGAC
390 CACTGTCCCATAGCGGTCATCCTCGGACGAC
1489343 AACCCTACTT
Statistics
Matches: 413, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
421 413 1.00
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (420 bp):
TCTGAACTTGTAGATAAATCATTAACGTTTGTTAAATAATCGGCATTGTTCTTGATTTCAGGACT
CGAGGTGTTGTTTCTAAGAGCAGCCAACATAATGTTGTTATGGCGTCGTTTGAAAGCCTGCTTCA
TTTCGGGGTCAGAACTTCTCCGCTGATACTGAGTTCGCGGACCCAGTCTATGGACCTCGGCCGTC
ACGTGCATCGTGCTCTCACTAGGAGCCGGCGATCGACTACGCGATGGGTCTCTCTCACACAGGCT
CCCCACAGAATGACGTATCGGATCGTGAAATGTCACACACCGCGGTCCACTCCGTCTATGTCGAT
TTCTGCGCACGATGACGTCACTGGGGAAGCCATTTTCAATGCTGTCTTCATGGACCGGGGCTAGC
ACTGTCCCATAGCGGTCATCCTCGGACGAC
Found at i:1499118 original size:15 final size:15
Alignment explanation
Indices: 1499098--1499127 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1499088 GGTAAGTGAA
1499098 GCGTCCGGATATCTG
1 GCGTCCGGATATCTG
1499113 GCGTCCGGATATCTG
1 GCGTCCGGATATCTG
1499128 AGGCTCCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27
Consensus pattern (15 bp):
GCGTCCGGATATCTG
Found at i:1504592 original size:35 final size:36
Alignment explanation
Indices: 1504501--1504594 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 36
1504491 CAGCATAATT
* * * * *
1504501 AAAATGATGATGTTTATAGAACGAGCAACAGCTTTG
1 AAAATCATGATCTTTATAGAATGAACAACAGCATTG
*
1504537 -AAATCATGATCTTTATAGAATGAACAATAGCATTG
1 AAAATCATGATCTTTATAGAATGAACAACAGCATTG
*
1504572 AAAAT-ATGATTTTTATAGAATGA
1 AAAATCATGATCTTTATAGAATGA
1504595 TTTATTTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
35 46 0.92
36 4 0.08
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (36 bp):
AAAATCATGATCTTTATAGAATGAACAACAGCATTG
Found at i:1506415 original size:42 final size:42
Alignment explanation
Indices: 1506356--1506442 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
1506346 TAAAAAGCAA
* * *
1506356 TTTCTACGCAATCTGTGCATATTTCACTTGATATCAACATTC
1 TTTCTACACAATCTGTGCATATTTCACTCGATATCAACATCC
1506398 TTTCTACACAATCTGTGCATATTTCACTCGATATCAACATCC
1 TTTCTACACAATCTGTGCATATTTCACTCGATATCAACATCC
1506440 TTT
1 TTT
1506443 TAATTTGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.25, G:0.08, T:0.40
Consensus pattern (42 bp):
TTTCTACACAATCTGTGCATATTTCACTCGATATCAACATCC
Found at i:1509221 original size:14 final size:14
Alignment explanation
Indices: 1509204--1509232 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1509194 ATGATACTAA
1509204 ACATGTACAGATAT
1 ACATGTACAGATAT
1509218 ACATGTACAGATAT
1 ACATGTACAGATAT
1509232 A
1 A
1509233 TATAATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (14 bp):
ACATGTACAGATAT
Found at i:1517680 original size:11 final size:11
Alignment explanation
Indices: 1517664--1517689 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1517654 TACCTTTTGA
1517664 AAAACATATAC
1 AAAACATATAC
1517675 AAAACATATAC
1 AAAACATATAC
1517686 AAAA
1 AAAA
1517690 TTCATTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAACATATAC
Done.