Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold867
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1160077
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.29
Warning! 150854 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:715145 original size:31 final size:31
Alignment explanation
Indices: 715107--715168 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
715097 CCAATTTCTA
715107 GGGTACGTTTTCTCCAGGAGAAAACGTACCC
1 GGGTACGTTTTCTCCAGGAGAAAACGTACCC
*
715138 GGGTACGTTTTCTCCTGGAGAAAACGTACCC
1 GGGTACGTTTTCTCCAGGAGAAAACGTACCC
715169 TATGAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (31 bp):
GGGTACGTTTTCTCCAGGAGAAAACGTACCC
Found at i:715836 original size:16 final size:16
Alignment explanation
Indices: 715789--715838 Score: 91
Period size: 16 Copynumber: 3.1 Consensus size: 16
715779 CCCTAGAAAT
*
715789 TGGGTACGTTTTCTCT
1 TGGGTACGTTTTCTCC
715805 TGGGTACGTTTTCTCC
1 TGGGTACGTTTTCTCC
715821 TGGGTACGTTTTCTCC
1 TGGGTACGTTTTCTCC
715837 TG
1 TG
715839 ACACCCTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.06, C:0.22, G:0.26, T:0.46
Consensus pattern (16 bp):
TGGGTACGTTTTCTCC
Found at i:716129 original size:1 final size:1
Alignment explanation
Indices: 716125--716149 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
716115 AAAATACCTT
716125 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
716150 CTAAAATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:716154 original size:27 final size:28
Alignment explanation
Indices: 716103--716155 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
716093 CTTTTTTAAT
* *
716103 AAAAAAAAAAAAAAAATACCTTAAAAAA
1 AAAAAAAAAAAAAAAAAAACTTAAAAAA
716131 AAAAAAAAAAAAAAAAAAAC-TAAAA
1 AAAAAAAAAAAAAAAAAAACTTAAAA
716156 TAGTAATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.87, C:0.06, G:0.00, T:0.08
Consensus pattern (28 bp):
AAAAAAAAAAAAAAAAAAACTTAAAAAA
Found at i:720448 original size:17 final size:17
Alignment explanation
Indices: 720421--720453 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
720411 AAATACTTTG
720421 CTTTAAAAC-TTGAATA
1 CTTTAAAACTTTGAATA
720437 CTTTATAAACTTTGAAT
1 CTTTA-AAACTTTGAAT
720454 TAATACAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
CTTTAAAACTTTGAATA
Found at i:721533 original size:21 final size:21
Alignment explanation
Indices: 721490--721530 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
721480 TTTACTTCAA
* *
721490 CTTAGCGAAAATTCTGAATTT
1 CTTAGCCAAAACTCTGAATTT
721511 CTTAGCCAAAACT-TGAATTT
1 CTTAGCCAAAACTCTGAATTT
721531 TCTCACCTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (21 bp):
CTTAGCCAAAACTCTGAATTT
Found at i:728151 original size:63 final size:64
Alignment explanation
Indices: 728084--728210 Score: 193
Period size: 63 Copynumber: 2.0 Consensus size: 64
728074 TTTCATACAG
* * * *
728084 CTGTTATCAGTCTTAAAAAAAAAAAAAAAAAA-CTCCGACGAAAAAAAAAAAAAAAAAANACAA
1 CTGTTATCAGTCTTAAAAAAAAAAAAAAAAAACCCCCAACAAAAAAAAAAAAAAAAAAAAACAA
**
728147 CTGTTATCTTTCTTAAAAAAAAAAAAAAAAAACCCCCAACAAAAAAAAAAAAAAAAAAAAACAA
1 CTGTTATCAGTCTTAAAAAAAAAAAAAAAAAACCCCCAACAAAAAAAAAAAAAAAAAAAAACAA
728211 GCAAAAGAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
63 30 0.53
64 27 0.47
ACGTcount: A:0.68, C:0.14, G:0.04, T:0.13
Consensus pattern (64 bp):
CTGTTATCAGTCTTAAAAAAAAAAAAAAAAAACCCCCAACAAAAAAAAAAAAAAAAAAAAACAA
Found at i:728215 original size:26 final size:26
Alignment explanation
Indices: 728161--728225 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
728151 TATCTTTCTT
***
728161 AAAAAAAAAAAAAAAAAACCCCCAAC
1 AAAAAAAAAAAAAAAAAACAAACAAC
728187 AAAAAAAAAAAAAAAAAA-AAACAAGC
1 AAAAAAAAAAAAAAAAAACAAACAA-C
*
728213 AAAAGAAAAAAAA
1 AAAAAAAAAAAAA
728226 GGCTGAAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 3 0.09
26 31 0.91
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAAAAAAAAACAAACAAC
Found at i:728221 original size:29 final size:29
Alignment explanation
Indices: 728161--728225 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
728151 TATCTTTCTT
**
728161 AAAAAAAAAAAAAAAAAACCCCCAACAAA
1 AAAAAAAAAAAAAAAAAACAACCAACAAA
* *
728190 AAAAAAAAAAAAAAAAAACAAGCAA-AAG
1 AAAAAAAAAAAAAAAAAACAACCAACAAA
728218 AAAAAAAA
1 AAAAAAAA
728226 GGCTGAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 10 0.31
29 22 0.69
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (29 bp):
AAAAAAAAAAAAAAAAAACAACCAACAAA
Found at i:728385 original size:42 final size:41
Alignment explanation
Indices: 728301--728386 Score: 136
Period size: 42 Copynumber: 2.1 Consensus size: 41
728291 AATAATAGAA
*
728301 AGAACGGGAAAAAATTAAATGGAGCTTTTTAGGGGTGTGAG
1 AGAACGGGAAAAAATTAAATGGAGCTTTTTAGGGGTGAGAG
**
728342 AGNAACGGGAAAAAATTAAATGGAGCTTTTTAGGTTTGAGAG
1 AG-AACGGGAAAAAATTAAATGGAGCTTTTTAGGGGTGAGAG
728384 AGA
1 AGA
728387 GAGAGAGAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 3 0.07
42 38 0.93
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.24
Consensus pattern (41 bp):
AGAACGGGAAAAAATTAAATGGAGCTTTTTAGGGGTGAGAG
Found at i:728386 original size:2 final size:2
Alignment explanation
Indices: 728379--728424 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
728369 TTTTAGGTTT
728379 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
728421 GA GA
1 GA GA
728425 TAGATGCACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:729114 original size:21 final size:22
Alignment explanation
Indices: 729090--729131 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
729080 CCAGAGGGCT
*
729090 AAATAAAACT-CTTTGTGTTTA
1 AAATAAAAATCCTTTGTGTTTA
729111 AAATAAAAATCCTTTGTGTTT
1 AAATAAAAATCCTTTGTGTTT
729132 GTTATCAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (22 bp):
AAATAAAAATCCTTTGTGTTTA
Found at i:729546 original size:2 final size:2
Alignment explanation
Indices: 729539--729577 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
729529 GAAGACTATG
*
729539 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
729578 NNNNNNNNNN
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:746411 original size:2 final size:2
Alignment explanation
Indices: 746404--746444 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
746394 ATCAACACCA
746404 TC TC TC TC TC TC TC TC TC TC TC TC TC -C TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
746445 CTTAATCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:753839 original size:25 final size:24
Alignment explanation
Indices: 753810--753858 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
753800 CTTTCAAAAA
753810 GAACCATGAAACCTATAATTTTGG
1 GAACCATGAAACCTATAATTTTGG
753834 NGAACCATGAAACCTATAATTTTGG
1 -GAACCATGAAACCTATAATTTTGG
753859 CAAAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.29
Consensus pattern (24 bp):
GAACCATGAAACCTATAATTTTGG
Found at i:755355 original size:11 final size:11
Alignment explanation
Indices: 755327--755366 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
755317 GTTCACCAGT
755327 TATAATAATATAA
1 TATAATAAT-T-A
755340 TATAATAATTA
1 TATAATAATTA
755351 TATAATAATTA
1 TATAATAATTA
755362 TATAA
1 TATAA
755367 ATATAATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 17 0.63
12 1 0.04
13 9 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TATAATAATTA
Found at i:756605 original size:2 final size:2
Alignment explanation
Indices: 756598--756651 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
756588 TGGGTTGTTT
756598 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
756640 TC TC TC TC TC TC
1 TC TC TC TC TC TC
756652 GCTTACGCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:756751 original size:4 final size:4
Alignment explanation
Indices: 756742--756775 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
756732 TTGAGATTGA
756742 AATG AATG AATG AATG AATG AATG AATG AATG AA
1 AATG AATG AATG AATG AATG AATG AATG AATG AA
756776 ATGTCTTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:760988 original size:40 final size:40
Alignment explanation
Indices: 760914--760990 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
760904 TGTTTCTGTC
*
760914 TGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
1 TGTCTGTCTGTCTCTCTCTCTCTCTCTCTATCTCTCTCTT
* *
760954 TGTCTGTCTGTCTCTCTCTCTCTTTGTCTATCTCTCT
1 TGTCTGTCTGTCTCTCTCTCTCTCTCTCTATCTCTCT
760991 GTCTCTCTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.01, C:0.36, G:0.09, T:0.53
Consensus pattern (40 bp):
TGTCTGTCTGTCTCTCTCTCTCTCTCTCTATCTCTCTCTT
Found at i:761019 original size:2 final size:2
Alignment explanation
Indices: 760924--761007 Score: 96
Period size: 2 Copynumber: 42.0 Consensus size: 2
760914 TGTCTGTCTG
* * * *
760924 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TG TC TG TC TG TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * *
760966 TC TC TC TC TC TT TG TC TA TC TC TC TG TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
761008 CGTATCTCTC
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.01, C:0.40, G:0.06, T:0.52
Consensus pattern (2 bp):
TC
Found at i:770545 original size:11 final size:11
Alignment explanation
Indices: 770531--770690 Score: 113
Period size: 11 Copynumber: 14.5 Consensus size: 11
770521 CCTTAAACAG
*
770531 TCAGTCACATT
1 TCAGTCACCTT
*
770542 TCAGTTACCTT
1 TCAGTCACCTT
* *
770553 TAAGTCACTTT
1 TCAGTCACCTT
* *
770564 TCGGTAACCTT
1 TCAGTCACCTT
*
770575 TAAGTCACCTT
1 TCAGTCACCTT
*
770586 TCAGTTACCTT
1 TCAGTCACCTT
** **
770597 AAAGTCATTTTT
1 TCAGTCA-CCTT
*
770609 TCAGTTACCTT
1 TCAGTCACCTT
*
770620 TAAGTCACCTT
1 TCAGTCACCTT
* * *
770631 TCATTTACATT
1 TCAGTCACCTT
*
770642 TAAGTCACCTT
1 TCAGTCACCTT
*
770653 TCAGTTACCTT
1 TCAGTCACCTT
*
770664 TAAGTCACCTT
1 TCAGTCACCTT
* *
770675 TCAATTACCTT
1 TCAGTCACCTT
770686 TCAGT
1 TCAGT
770691 TAAAAAGGGG
Statistics
Matches: 106, Mismatches: 42, Indels: 2
0.71 0.28 0.01
Matches are distributed among these distances:
11 100 0.94
12 6 0.06
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (11 bp):
TCAGTCACCTT
Found at i:770565 original size:22 final size:22
Alignment explanation
Indices: 770533--770686 Score: 209
Period size: 22 Copynumber: 7.0 Consensus size: 22
770523 TTAAACAGTC
*
770533 AGTCACATTTCAGTTACCTTTA
1 AGTCACCTTTCAGTTACCTTTA
* * *
770555 AGTCACTTTTCGGTAACCTTTA
1 AGTCACCTTTCAGTTACCTTTA
*
770577 AGTCACCTTTCAGTTACCTTAA
1 AGTCACCTTTCAGTTACCTTTA
**
770599 AGTCATTTTTTCAGTTACCTTTA
1 AGTCA-CCTTTCAGTTACCTTTA
* *
770622 AGTCACCTTTCATTTACATTTA
1 AGTCACCTTTCAGTTACCTTTA
770644 AGTCACCTTTCAGTTACCTTTA
1 AGTCACCTTTCAGTTACCTTTA
*
770666 AGTCACCTTTCAATTACCTTT
1 AGTCACCTTTCAGTTACCTTT
770687 CAGTTAAAAA
Statistics
Matches: 114, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
22 95 0.83
23 19 0.17
ACGTcount: A:0.25, C:0.24, G:0.08, T:0.43
Consensus pattern (22 bp):
AGTCACCTTTCAGTTACCTTTA
Found at i:770644 original size:67 final size:67
Alignment explanation
Indices: 770540--770670 Score: 208
Period size: 67 Copynumber: 2.0 Consensus size: 67
770530 GTCAGTCACA
* * *
770540 TTTCAGTTACCTTTAAGTCACTTTTCGGTAACCTTTAAGTCACCTTTCAGTTACCTTAAAGTCAT
1 TTTCAGTTACCTTTAAGTCACCTTTCAGTAACATTTAAGTCACCTTTCAGTTACCTTAAAGTCAT
770605 TT
66 TT
* * *
770607 TTTCAGTTACCTTTAAGTCACCTTTCATTTACATTTAAGTCACCTTTCAGTTACCTTTAAGTCA
1 TTTCAGTTACCTTTAAGTCACCTTTCAGTAACATTTAAGTCACCTTTCAGTTACCTTAAAGTCA
770671 CCTTTCAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.24, C:0.23, G:0.09, T:0.44
Consensus pattern (67 bp):
TTTCAGTTACCTTTAAGTCACCTTTCAGTAACATTTAAGTCACCTTTCAGTTACCTTAAAGTCAT
TT
Found at i:777138 original size:16 final size:16
Alignment explanation
Indices: 777117--777156 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
777107 TATTAATGGA
777117 GTTTGATAAAGTTTGT
1 GTTTGATAAAGTTTGT
* *
777133 GTTTGATGAATTTTGT
1 GTTTGATAAAGTTTGT
777149 GTTTGATA
1 GTTTGATA
777157 TTCTTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (16 bp):
GTTTGATAAAGTTTGT
Found at i:777493 original size:31 final size:32
Alignment explanation
Indices: 777394--777548 Score: 224
Period size: 31 Copynumber: 4.8 Consensus size: 32
777384 ATTTACCGGA
*
777394 TGGCAGTAAATACAAAATGCACAGCATGACAACT
1 TGGCAGTAAATACAAAATGTACA--ATGACAACT
777428 TGGCAGTAAATACAAAATGTACAGCATGACAACT
1 TGGCAGTAAATACAAAATGTACA--ATGACAACT
*
777462 TGGCATTAAATACAAAATGTACAA-GACAACT
1 TGGCAGTAAATACAAAATGTACAATGACAACT
*
777493 TGGCATTAAATACAAAATGTACAA-GACAACT
1 TGGCAGTAAATACAAAATGTACAATGACAACT
*
777524 TGGCAGTAAATACAAAATTTACAAT
1 TGGCAGTAAATACAAAATGTACAAT
777549 TTGACAGACG
Statistics
Matches: 116, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
31 60 0.52
32 1 0.01
34 55 0.47
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (32 bp):
TGGCAGTAAATACAAAATGTACAATGACAACT
Found at i:777683 original size:4 final size:4
Alignment explanation
Indices: 777674--777741 Score: 136
Period size: 4 Copynumber: 17.0 Consensus size: 4
777664 GTTCGTGTAG
777674 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
777722 TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC
777742 AGGAAGTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
TATC
Found at i:779881 original size:203 final size:203
Alignment explanation
Indices: 779289--779893 Score: 1075
Period size: 203 Copynumber: 3.0 Consensus size: 203
779279 GGCTGGGGTG
* *
779289 GTAGATTCATACAAAGTGTGATCTATTTTTCATTTCCCTTAGACCCCTGTTTAAATACGAACTGC
1 GTAGATTCATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
779354 AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
66 AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
* * *
779419 TGGATCAAATTGTGACGTTGGTAAGTTTTAATTGAAGCTGACGGTCAATTGATCATGGATTCATT
131 TGGATCAAATTGTGACGTTGGTGAGTTTTAATTGAAGCTGAAGGTCAATTGATCATTGATTCATT
779484 AATGTATA
196 AATGTATA
*
779492 GTAGATTAATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
1 GTAGATTCATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
779557 AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
66 AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
*
779622 TGGATCAAATTGTGACGTTGGTGAGTTTTAATTGAAGCTGAAGGCCAATTGATCATTGATTCATT
131 TGGATCAAATTGTGACGTTGGTGAGTTTTAATTGAAGCTGAAGGTCAATTGATCATTGATTCATT
779687 AATGTATA
196 AATGTATA
779695 GTAGATTCATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
1 GTAGATTCATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
* *
779760 AACCAAGGAAGTTGTGAATCTTTGTCAGAAACACAAACACAGTGTAATTGCGACGCTGGATGGTT
66 AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
* ** * * *
779825 TGGACCAGCTTGTGACGTTGGTGAGTTTAAATTGAAGCTGAAGGTCAATTGATCATTGAGTCTTT
131 TGGATCAAATTGTGACGTTGGTGAGTTTTAATTGAAGCTGAAGGTCAATTGATCATTGATTCATT
779890 AATG
196 AATG
779894 CATTTTTGTT
Statistics
Matches: 385, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
203 385 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (203 bp):
GTAGATTCATACAAAGTGTGATGTATTTTTCATTTCTCTTAGACCCCTGTTTAAATACGAACTGC
AACCAAGGAAGTTGTGAAGCTTTGTCAGAAACACAAACACAGTGTAATTGCGACCCTGGATGGTT
TGGATCAAATTGTGACGTTGGTGAGTTTTAATTGAAGCTGAAGGTCAATTGATCATTGATTCATT
AATGTATA
Found at i:781143 original size:29 final size:29
Alignment explanation
Indices: 781110--781269 Score: 176
Period size: 29 Copynumber: 5.5 Consensus size: 29
781100 AAATTGTAAT
*
781110 CCAATGTAATTATAATCAGAGACATAGAC
1 CCAATGTAATTGTAATCAGAGACATAGAC
** *
781139 CCAATGTAATTGTAATCAGAGACCCAAAC
1 CCAATGTAATTGTAATCAGAGACATAGAC
* * ** *
781168 ACAATGTAATTGTAATCAAAGATGTAGTC
1 CCAATGTAATTGTAATCAGAGACATAGAC
* * * *
781197 TCAATGTAATTGTAATCAGAGATACAGAG
1 CCAATGTAATTGTAATCAGAGACATAGAC
* * *
781226 ACAATGTAATTGTAATCATAGACATAGAA
1 CCAATGTAATTGTAATCAGAGACATAGAC
781255 CCAATGTAATTGTAA
1 CCAATGTAATTGTAA
781270 AATTTTTAGA
Statistics
Matches: 108, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 108 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (29 bp):
CCAATGTAATTGTAATCAGAGACATAGAC
Found at i:781202 original size:58 final size:57
Alignment explanation
Indices: 781111--781269 Score: 201
Period size: 58 Copynumber: 2.7 Consensus size: 57
781101 AATTGTAATC
* * *
781111 CAATGTAATTATAATCAGAGACATAGACCCAATGTAATTGTAATCAGAGACCCAAACA
1 CAATGTAATTGTAATCAAAGACATAGA-CCAATGTAATTGTAATCAGAGACACAAACA
** * * * *
781169 CAATGTAATTGTAATCAAAGATGTAGTCTCAATGTAATTGTAATCAGAGATACAGAGA
1 CAATGTAATTGTAATCAAAGACATAGAC-CAATGTAATTGTAATCAGAGACACAAACA
*
781227 CAATGTAATTGTAATCATAGACATAGAACCAATGTAATTGTAA
1 CAATGTAATTGTAATCAAAGACATAG-ACCAATGTAATTGTAA
781270 AATTTTTAGA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
57 1 0.01
58 84 0.98
59 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (57 bp):
CAATGTAATTGTAATCAAAGACATAGACCAATGTAATTGTAATCAGAGACACAAACA
Found at i:781237 original size:87 final size:87
Alignment explanation
Indices: 781111--781269 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
781101 AATTGTAATC
* * *
781111 CAATGTAATTATAATCAGAGACATAGACCCAATGTAATTGTAATCAGAGACCCA-AACACAATGT
1 CAATGTAATTATAATCAGAGACACAGACACAATGTAATTGTAATCAGAGACACAGAAC-CAATGT
781175 AATTGTAATCAAAGATGTAGTCT
65 AATTGTAATCAAAGATGTAGTCT
* * * * *
781198 CAATGTAATTGTAATCAGAGATACAGAGACAATGTAATTGTAATCATAGACATAGAACCAATGTA
1 CAATGTAATTATAATCAGAGACACAGACACAATGTAATTGTAATCAGAGACACAGAACCAATGTA
781263 ATTGTAA
66 ATTGTAA
781270 AATTTTTAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 60 0.95
88 3 0.05
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (87 bp):
CAATGTAATTATAATCAGAGACACAGACACAATGTAATTGTAATCAGAGACACAGAACCAATGTA
ATTGTAATCAAAGATGTAGTCT
Found at i:781374 original size:8 final size:8
Alignment explanation
Indices: 781361--782334 Score: 1354
Period size: 8 Copynumber: 117.9 Consensus size: 8
781351 AAATGACACA
781361 AATGATAC
1 AATGATAC
781369 AATGATAC
1 AATGATAC
781377 AATGATAC
1 AATGATAC
*
781385 AATGACAC
1 AATGATAC
781393 AAATGATAC
1 -AATGATAC
*
781402 AATGGTAC
1 AATGATAC
781410 AATGATAC
1 AATGATAC
781418 AAATGATAC
1 -AATGATAC
*
781427 AATGAAAC
1 AATGATAC
781435 AATGATAC
1 AATGATAC
*
781443 AAATGATGC
1 -AATGATAC
781452 AATGATAC
1 AATGATAC
781460 AATGATAC
1 AATGATAC
781468 AAATGATAC
1 -AATGATAC
781477 AATGATAC
1 AATGATAC
781485 AAATGATAC
1 -AATGATAC
781494 AAATGATAC
1 -AATGATAC
781503 AATGATAC
1 AATGATAC
781511 AAATGATAC
1 -AATGATAC
*
781520 AATGGTAC
1 AATGATAC
781528 AATGATAC
1 AATGATAC
*
781536 AATGGTAC
1 AATGATAC
781544 AATGATAC
1 AATGATAC
781552 AATGATAC
1 AATGATAC
781560 AATGATAC
1 AATGATAC
781568 AATGATAC
1 AATGATAC
781576 AAATGATAC
1 -AATGATAC
781585 AATGATAC
1 AATGATAC
781593 AAATGATAC
1 -AATGATAC
781602 AATGATAC
1 AATGATAC
781610 AAATGATAC
1 -AATGATAC
*
781619 AATGGTAC
1 AATGATAC
781627 AATGATAC
1 AATGATAC
*
781635 AATGGTAC
1 AATGATAC
781643 AATGATAC
1 AATGATAC
781651 AAATGATAC
1 -AATGATAC
781660 AATGATAC
1 AATGATAC
781668 AATGATAC
1 AATGATAC
*
781676 AATGGTAC
1 AATGATAC
781684 AATGATAC
1 AATGATAC
*
781692 AATGGTAC
1 AATGATAC
781700 AATGATAC
1 AATGATAC
781708 AATGATAC
1 AATGATAC
*
781716 AATGACAC
1 AATGATAC
781724 AAATGATAC
1 -AATGATAC
781733 AATGATAC
1 AATGATAC
781741 AATGATAC
1 AATGATAC
*
781749 AATGAAAC
1 AATGATAC
*
781757 AATGACAC
1 AATGATAC
781765 AAATGATAC
1 -AATGATAC
781774 AATGATAC
1 AATGATAC
781782 AAATGATAC
1 -AATGATAC
781791 AAATGATAC
1 -AATGATAC
781800 AATGATAC
1 AATGATAC
781808 AATGATAC
1 AATGATAC
781816 AATGATAC
1 AATGATAC
781824 AAATGATAC
1 -AATGATAC
*
781833 AATGGTAC
1 AATGATAC
781841 AATGATAC
1 AATGATAC
*
781849 AATGGTAC
1 AATGATAC
781857 AATGATAC
1 AATGATAC
781865 AATGATAC
1 AATGATAC
*
781873 AATGACAC
1 AATGATAC
*
781881 AAAGGATAC
1 -AATGATAC
781890 AATGATAC
1 AATGATAC
*
781898 AATGACAC
1 AATGATAC
781906 AAATGATAC
1 -AATGATAC
781915 AATGATAC
1 AATGATAC
*
781923 AATGACAC
1 AATGATAC
781931 AAATGATAC
1 -AATGATAC
781940 AATGATAC
1 AATGATAC
781948 AATGATAC
1 AATGATAC
781956 AATTGATAC
1 AA-TGATAC
781965 AATGATAC
1 AATGATAC
781973 AAATGATAC
1 -AATGATAC
*
781982 AATGGTAC
1 AATGATAC
*
781990 AATGGTAC
1 AATGATAC
781998 AATGATAC
1 AATGATAC
782006 AATGATAC
1 AATGATAC
782014 AATGATAC
1 AATGATAC
* *
782022 AATGACAT
1 AATGATAC
782030 ATATGATAC
1 A-ATGATAC
*
782039 AATGACAC
1 AATGATAC
*
782047 AATGACAC
1 AATGATAC
782055 AACTGATAC
1 AA-TGATAC
782064 AATGATAC
1 AATGATAC
782072 AATGATAC
1 AATGATAC
782080 AATGATAC
1 AATGATAC
*
782088 AATGACAC
1 AATGATAC
782096 AAATGATAC
1 -AATGATAC
782105 AATGATAC
1 AATGATAC
*
782113 AATGACAC
1 AATGATAC
782121 AAATGATAC
1 -AATGATAC
782130 AATGATAC
1 AATGATAC
782138 AATGATAC
1 AATGATAC
782146 AATTGATAC
1 AA-TGATAC
782155 AATGATAC
1 AATGATAC
782163 AAATGATAC
1 -AATGATAC
*
782172 AATGGTAC
1 AATGATAC
*
782180 AATGGTAC
1 AATGATAC
782188 AATGATAC
1 AATGATAC
782196 AATGATAC
1 AATGATAC
782204 AATGATAC
1 AATGATAC
* *
782212 AATGACAT
1 AATGATAC
782220 ATATGATAC
1 A-ATGATAC
*
782229 AATGACAC
1 AATGATAC
*
782237 AATGACAC
1 AATGATAC
782245 AACTGATAC
1 AA-TGATAC
782254 AATGATAC
1 AATGATAC
782262 AATGATAC
1 AATGATAC
782270 AATGATAC
1 AATGATAC
*
782278 AATGACAC
1 AATGATAC
782286 AAATGATAC
1 -AATGATAC
782295 AATGATAC
1 AATGATAC
782303 AATGATAC
1 AATGATAC
782311 AAATGATAC
1 -AATGATAC
*
782320 AATGTTAC
1 AATGATAC
782328 AATGATA
1 AATGATA
782335 AAAAATACAA
Statistics
Matches: 876, Mismatches: 61, Indels: 58
0.88 0.06 0.06
Matches are distributed among these distances:
8 643 0.73
9 233 0.27
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (8 bp):
AATGATAC
Found at i:781381 original size:25 final size:24
Alignment explanation
Indices: 781361--782334 Score: 1354
Period size: 25 Copynumber: 39.3 Consensus size: 24
781351 AAATGACACA
781361 AATGATACAATGATACAATGATAC
1 AATGATACAATGATACAATGATAC
* *
781385 AATGACACAAATGATACAATGGTAC
1 AATGATAC-AATGATACAATGATAC
*
781410 AATGATACAAATGATACAATGAAAC
1 AATGATAC-AATGATACAATGATAC
*
781435 AATGATACAAATGATGCAATGATAC
1 AATGATAC-AATGATACAATGATAC
781460 AATGATACAAATGATACAATGATAC
1 AATGATAC-AATGATACAATGATAC
781485 AAATGATACAAATGATACAATGATAC
1 -AATGATAC-AATGATACAATGATAC
*
781511 AAATGATACAATGGTACAATGATAC
1 -AATGATACAATGATACAATGATAC
*
781536 AATGGTACAATGATACAATGATAC
1 AATGATACAATGATACAATGATAC
781560 AATGATACAATGATACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
781585 AATGATACAAATGATACAATGATAC
1 AATGATAC-AATGATACAATGATAC
*
781610 AAATGATACAATGGTACAATGATAC
1 -AATGATACAATGATACAATGATAC
*
781635 AATGGTACAATGATACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
*
781660 AATGATACAATGATACAATGGTAC
1 AATGATACAATGATACAATGATAC
*
781684 AATGATACAATGGTACAATGATAC
1 AATGATACAATGATACAATGATAC
*
781708 AATGATACAATGACACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
*
781733 AATGATACAATGATACAATGAAAC
1 AATGATACAATGATACAATGATAC
*
781757 AATGACACAAATGATACAATGATAC
1 AATGATAC-AATGATACAATGATAC
781782 AAATGATACAAATGATACAATGATAC
1 -AATGATAC-AATGATACAATGATAC
781808 AATGATACAATGATACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
* *
781833 AATGGTACAATGATACAATGGTAC
1 AATGATACAATGATACAATGATAC
*
781857 AATGATACAATGATACAATGACAC
1 AATGATACAATGATACAATGATAC
* *
781881 AAAGGATACAATGATACAATGACAC
1 -AATGATACAATGATACAATGATAC
*
781906 AAATGATACAATGATACAATGACAC
1 -AATGATACAATGATACAATGATAC
781931 AAATGATACAATGATACAATGATAC
1 -AATGATACAATGATACAATGATAC
781956 AATTGATACAATGATACAAATGATAC
1 AA-TGATACAATGATAC-AATGATAC
* *
781982 AATGGTACAATGGTACAATGATAC
1 AATGATACAATGATACAATGATAC
* *
782006 AATGATACAATGATACAATGACAT
1 AATGATACAATGATACAATGATAC
* *
782030 ATATGATACAATGACACAATGACAC
1 A-ATGATACAATGATACAATGATAC
782055 AACTGATACAATGATACAATGATAC
1 AA-TGATACAATGATACAATGATAC
*
782080 AATGATACAATGACACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
*
782105 AATGATACAATGACACAAATGATAC
1 AATGATACAATGATAC-AATGATAC
782130 AATGATACAATGATACAATTGATAC
1 AATGATACAATGATACAA-TGATAC
*
782155 AATGATACAAATGATACAATGGTAC
1 AATGATAC-AATGATACAATGATAC
*
782180 AATGGTACAATGATACAATGATAC
1 AATGATACAATGATACAATGATAC
* *
782204 AATGATACAATGACATATATGATAC
1 AATGATACAATGATACA-ATGATAC
* *
782229 AATGACACAATGACACAACTGATAC
1 AATGATACAATGATACAA-TGATAC
782254 AATGATACAATGATACAATGATAC
1 AATGATACAATGATACAATGATAC
*
782278 AATGACACAAATGATACAATGATAC
1 AATGATAC-AATGATACAATGATAC
*
782303 AATGATACAAATGATACAATGTTAC
1 AATGATAC-AATGATACAATGATAC
782328 AATGATA
1 AATGATA
782335 AAAAATACAA
Statistics
Matches: 870, Mismatches: 59, Indels: 41
0.90 0.06 0.04
Matches are distributed among these distances:
24 241 0.28
25 535 0.61
26 94 0.11
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (24 bp):
AATGATACAATGATACAATGATAC
Found at i:781389 original size:33 final size:32
Alignment explanation
Indices: 781361--782334 Score: 1354
Period size: 33 Copynumber: 29.5 Consensus size: 32
781351 AAATGACACA
*
781361 AATGATACAATGATACAATGATACAATGACAC
1 AATGATACAATGATACAATGATACAATGATAC
*
781393 AAATGATACAATGGTACAATGATACAAATGATAC
1 -AATGATACAATGATACAATGATAC-AATGATAC
* *
781427 AATGAAACAATGATACAAATGATGCAATGATAC
1 AATGATACAATGATAC-AATGATACAATGATAC
781460 AATGATACAAATGATACAATGATACAAATGATAC
1 AATGATAC-AATGATACAATGATAC-AATGATAC
*
781494 AAATGATACAATGATACAAATGATACAATGGTAC
1 -AATGATACAATGATAC-AATGATACAATGATAC
*
781528 AATGATACAATGGTACAATGATACAATGATAC
1 AATGATACAATGATACAATGATACAATGATAC
781560 AATGATACAATGATACAAATGATACAATGATAC
1 AATGATACAATGATAC-AATGATACAATGATAC
*
781593 AAATGATACAATGATACAAATGATACAATGGTAC
1 -AATGATACAATGATAC-AATGATACAATGATAC
*
781627 AATGATACAATGGTACAATGATACAAATGATAC
1 AATGATACAATGATACAATGATAC-AATGATAC
*
781660 AATGATACAATGATACAATGGTACAATGATAC
1 AATGATACAATGATACAATGATACAATGATAC
* *
781692 AATGGTACAATGATACAATGATACAATGACAC
1 AATGATACAATGATACAATGATACAATGATAC
*
781724 AAATGATACAATGATACAATGATACAATGAAAC
1 -AATGATACAATGATACAATGATACAATGATAC
*
781757 AATGACACAAATGATACAATGATACAAATGATAC
1 AATGATAC-AATGATACAATGATAC-AATGATAC
781791 AAATGATACAATGATACAATGATACAATGATAC
1 -AATGATACAATGATACAATGATACAATGATAC
* *
781824 AAATGATACAATGGTACAATGATACAATGGTAC
1 -AATGATACAATGATACAATGATACAATGATAC
* *
781857 AATGATACAATGATACAATGACACAAAGGATAC
1 AATGATACAATGATACAATGATAC-AATGATAC
*
781890 AATGATACAATGACACAAATGATACAATGATAC
1 AATGATACAATGATAC-AATGATACAATGATAC
*
781923 AATGACACAAATGATACAATGATACAATGATAC
1 AATGATAC-AATGATACAATGATACAATGATAC
*
781956 AATTGATACAATGATACAAATGATACAATGGTAC
1 AA-TGATACAATGATAC-AATGATACAATGATAC
*
781990 AATGGTACAATGATACAATGATACAATGATAC
1 AATGATACAATGATACAATGATACAATGATAC
* * * *
782022 AATGACATATATGATACAATGACACAATGACAC
1 AATGATACA-ATGATACAATGATACAATGATAC
782055 AACTGATACAATGATACAATGATACAATGATAC
1 AA-TGATACAATGATACAATGATACAATGATAC
* *
782088 AATGACACAAATGATACAATGATACAATGACAC
1 AATGATAC-AATGATACAATGATACAATGATAC
782121 AAATGATACAATGATACAATGATACAATTGATAC
1 -AATGATACAATGATACAATGATACAA-TGATAC
* *
782155 AATGATACAAATGATACAATGGTACAATGGTAC
1 AATGATAC-AATGATACAATGATACAATGATAC
* *
782188 AATGATACAATGATACAATGATACAATGACAT
1 AATGATACAATGATACAATGATACAATGATAC
* *
782220 ATATGATACAATGACACAATGACACAACTGATAC
1 A-ATGATACAATGATACAATGATACAA-TGATAC
*
782254 AATGATACAATGATACAATGATACAATGACAC
1 AATGATACAATGATACAATGATACAATGATAC
782286 AAATGATACAATGATACAATGATACAAATGATAC
1 -AATGATACAATGATACAATGATAC-AATGATAC
*
782320 AATGTTACAATGATA
1 AATGATACAATGATA
782335 AAAAATACAA
Statistics
Matches: 846, Mismatches: 67, Indels: 56
0.87 0.07 0.06
Matches are distributed among these distances:
32 156 0.18
33 485 0.57
34 182 0.22
35 23 0.03
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (32 bp):
AATGATACAATGATACAATGATACAATGATAC
Found at i:812031 original size:11 final size:11
Alignment explanation
Indices: 811997--812034 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
811987 CAGGTTTACT
811997 AGAGTAAACCC
1 AGAGTAAACCC
*
812008 AAAGTAAACCC
1 AGAGTAAACCC
812019 AGAGTAAACCC
1 AGAGTAAACCC
812030 AGAGT
1 AGAGT
812035 GGACACAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (11 bp):
AGAGTAAACCC
Found at i:812043 original size:22 final size:23
Alignment explanation
Indices: 811997--812053 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
811987 CAGGTTTACT
*
811997 AGAGTAAACCCAAAGTAAAC-CC
1 AGAGTAAACCCAAAGTAAACACA
* **
812019 AGAGTAAACCCAGAGTGGACACA
1 AGAGTAAACCCAAAGTAAACACA
812042 GAGAGTAAACCC
1 -AGAGTAAACCC
812054 CGATCAGAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 17 0.59
23 1 0.03
24 11 0.38
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (23 bp):
AGAGTAAACCCAAAGTAAACACA
Found at i:812204 original size:11 final size:11
Alignment explanation
Indices: 812188--812229 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
812178 CAAGTTTCAT
812188 GTAAACCCAAA
1 GTAAACCCAAA
*
812199 GTAAACCCCGAA
1 GTAAA-CCCAAA
812211 -TAAACCCAAA
1 GTAAACCCAAA
*
812221 TTAAACCCA
1 GTAAACCCA
812230 GAGTGGACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 5 0.19
11 17 0.63
12 5 0.19
ACGTcount: A:0.50, C:0.31, G:0.07, T:0.12
Consensus pattern (11 bp):
GTAAACCCAAA
Found at i:815950 original size:4 final size:4
Alignment explanation
Indices: 815943--816029 Score: 147
Period size: 4 Copynumber: 21.8 Consensus size: 4
815933 TTTTTCATAC
* *
815943 ATAG ATAG ATAG ATAG ATAG ATAT ATAG ATAG GTAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
*
815991 ATAG ATAG ATAG ATAT ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
816030 ATTTAAACTA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 77 1.00
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (4 bp):
ATAG
Found at i:823932 original size:7 final size:7
Alignment explanation
Indices: 823920--823986 Score: 89
Period size: 7 Copynumber: 9.6 Consensus size: 7
823910 GAGAAGGATC
823920 ATTCGAG
1 ATTCGAG
823927 ATTCGAG
1 ATTCGAG
*
823934 ATTCGAA
1 ATTCGAG
*
823941 ATACGAG
1 ATTCGAG
*
823948 ATTCGAA
1 ATTCGAG
*
823955 ATACGAG
1 ATTCGAG
823962 ATTCGAG
1 ATTCGAG
*
823969 ATTCGAA
1 ATTCGAG
823976 ATTCGAG
1 ATTCGAG
823983 ATTC
1 ATTC
823987 AATATCTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (7 bp):
ATTCGAG
Found at i:859707 original size:197 final size:196
Alignment explanation
Indices: 859372--859764 Score: 777
Period size: 197 Copynumber: 2.0 Consensus size: 196
859362 ATTCTGAAGA
859372 ATGCCTTTATCAAAAATGGTGAAATATATCGTAATATATCTGATATTGGTTCAAATACGATTTTT
1 ATGCCTTTATCAAAAATGGTGAAATATATCGTAATATATCTGATATTGGTTCAAATACGATTTTT
859437 TGTCATATTAATATTTATCCTTTTTTAACTGTTGTTATACATTTCGGGTTTTTCCTGAATATCTG
66 TGTCATATTAATATTTATCCTTTTTTAACTGTTGTTATACATTTCGGGTTTTTCCTGAATATCTG
859502 ATGATAGTGATACAGATTCTCTCCGAGTTTATACAGGTTATATAAGACTCATTCTTCTGATTTTT
131 ATGATAGTGATACAGATTCTCTCCGAGTTTATACAGGTTATATAAGACTCATTCTTCTGATTTTT
859567 C
196 C
859568 NATGCCTTTATCAAAAATGGTGAAATATATCGTAATATATCTGATATTGGTTCAAATACGATTTT
1 -ATGCCTTTATCAAAAATGGTGAAATATATCGTAATATATCTGATATTGGTTCAAATACGATTTT
859633 TTGTCATATTAATATTTATCCTTTTTTAACTGTTGTTATACATTTCGGGTTTTTCCTGAATATCT
65 TTGTCATATTAATATTTATCCTTTTTTAACTGTTGTTATACATTTCGGGTTTTTCCTGAATATCT
859698 GATGATAGTGATACAGATTCTCTCCGAGTTTATACAGGTTATATAAGACTCATTCTTCTGATTTT
130 GATGATAGTGATACAGATTCTCTCCGAGTTTATACAGGTTATATAAGACTCATTCTTCTGATTTT
859763 TC
195 TC
859765 TGGGTCACAT
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
197 196 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (196 bp):
ATGCCTTTATCAAAAATGGTGAAATATATCGTAATATATCTGATATTGGTTCAAATACGATTTTT
TGTCATATTAATATTTATCCTTTTTTAACTGTTGTTATACATTTCGGGTTTTTCCTGAATATCTG
ATGATAGTGATACAGATTCTCTCCGAGTTTATACAGGTTATATAAGACTCATTCTTCTGATTTTT
C
Found at i:863500 original size:23 final size:23
Alignment explanation
Indices: 863470--863514 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
863460 CATGGTGGAG
*
863470 TGGGAGTGGGGTGAGAGAGTGCA
1 TGGGAGTGGGGAGAGAGAGTGCA
863493 TGGGAGTGGGGAGAGAGAGTGC
1 TGGGAGTGGGGAGAGAGAGTGC
863515 GCAGCACTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.58, T:0.16
Consensus pattern (23 bp):
TGGGAGTGGGGAGAGAGAGTGCA
Found at i:863732 original size:13 final size:13
Alignment explanation
Indices: 863714--863738 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
863704 TATTATGTAC
863714 TGTATGTAAAACA
1 TGTATGTAAAACA
863727 TGTATGTAAAAC
1 TGTATGTAAAAC
863739 CTTAAATAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATGTAAAACA
Found at i:865239 original size:10 final size:10
Alignment explanation
Indices: 865224--865249 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
865214 CGCTCGGCTG
865224 TCTCCGTAAA
1 TCTCCGTAAA
865234 TCTCCGTAAA
1 TCTCCGTAAA
865244 TCTCCG
1 TCTCCG
865250 ACAAGCAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.35, G:0.12, T:0.31
Consensus pattern (10 bp):
TCTCCGTAAA
Found at i:866334 original size:2 final size:2
Alignment explanation
Indices: 866327--866363 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
866317 TTTGCAAATT
866327 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
866364 GCAGTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:874401 original size:167 final size:168
Alignment explanation
Indices: 873625--874412 Score: 1037
Period size: 168 Copynumber: 4.7 Consensus size: 168
873615 CCCTTCATGT
* * * * *
873625 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTAGGTAAAGGAGATT-GTGGATATCAT
1 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGG-GCTTCATGGACATCAT
* * * * * *
873689 AACCATGTATTCAGTTTTTTGCCT-ACATGTGTGGGAGTAGAGAAGAAGATTTTTTAAGATTTAA
65 AACCATGCATTCAGTTTTTT-ACTAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAA
* *
873753 AACATTTTTACTATATGGCCATATTGACCCCACCCTAGAG
129 TACATTTTTACTATATGGCCATATTGGCCCCACCCTAGAG
* * *
873793 CCTGAACCCCTGACCCAGGGGCCATAAATTTCACAATTTTGGTAGAGGGCCTCATGGGCATCATA
1 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
* * ** * *
873858 ACCATGCATTAAGTTTTTAAGAAATATATATGGGAGAAGAGAAGAAGACTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTTACTAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
873923 CATTTTTACTATTTGGCCATATTGGCCCTACCCTAGAG
131 CATTTTTACTATATGGCCATATTGGCCCCACCCTAGAG
* * *
873961 CCTGAACCCCTGACCCAGGGGTCATGAATTTCACAATTTTGATAGAGGGCCTCATGGACATCATA
1 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
* * * * **
874026 ATCATGCATTTAGTTTTTAACAAATATATATGATAGTAGAGAAGAAGATTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTTACTAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
874091 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAT
131 CATTTTTACTATATGGCCATATTGGCCCCACCCTAGAG
* * *
874129 CCTGAACCCCTGACCCAGGGGTCATGAATTTCACAATTTAGGTAGAGGGCTTCATGGACATCAAA
1 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
* * *
874194 ATCATGCATTTA-TTTTTTA-TAAAATATATATGGTAGTAGAGAAGAAGATTTTCTAAGATTTAA
66 ACCATGCATTCAGTTTTTTACT--AATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAA
*
874257 TATA-TTTTACTATATGGCCATATTGGCCCCACCCTAGAG
129 TACATTTTTACTATATGGCCATATTGGCCCCACCCTAGAG
* *
874296 CCAGAACCCCTGACCCAGGGGCCATAAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
1 CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
* ** * * * * *
874361 ACCATGTAACCAGTTTTTTCCTCACATGTGTGGGAGTAGAGAAGAAGATTTT
66 ACCATGCATTCAGTTTTTTACTAATATATATGGGAGTAGAGAAGAAGATTTT
874413 TGAAAATTTG
Statistics
Matches: 551, Mismatches: 63, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
167 133 0.24
168 417 0.76
169 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (168 bp):
CCTGAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
ACCATGCATTCAGTTTTTTACTAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
CATTTTTACTATATGGCCATATTGGCCCCACCCTAGAG
Found at i:874593 original size:7 final size:7
Alignment explanation
Indices: 874583--874613 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
874573 AAAATTGTTA
874583 ACGCACG
1 ACGCACG
874590 ACGCACG
1 ACGCACG
*
874597 GCGCACG
1 ACGCACG
874604 ACGCACG
1 ACGCACG
874611 ACG
1 ACG
874614 ACGGACGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.26, C:0.42, G:0.32, T:0.00
Consensus pattern (7 bp):
ACGCACG
Found at i:875587 original size:12 final size:12
Alignment explanation
Indices: 875570--875595 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
875560 GAAAATGTTA
875570 TCTCGCAAACTT
1 TCTCGCAAACTT
875582 TCTCGCAAACTT
1 TCTCGCAAACTT
875594 TC
1 TC
875596 CTACTTATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.08, T:0.35
Consensus pattern (12 bp):
TCTCGCAAACTT
Found at i:876568 original size:15 final size:16
Alignment explanation
Indices: 876544--876586 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
876534 GCTTACTCTA
*
876544 CTTATATTGAACT-CG
1 CTTATTTTGAACTCCG
*
876559 CTTATTTTGAAATTCCG
1 CTTATTTTG-AACTCCG
876576 CTTATTTTGAA
1 CTTATTTTGAA
876587 ATAGAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.33
16 5 0.21
17 11 0.46
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.47
Consensus pattern (16 bp):
CTTATTTTGAACTCCG
Found at i:886855 original size:165 final size:165
Alignment explanation
Indices: 886583--886886 Score: 416
Period size: 165 Copynumber: 1.8 Consensus size: 165
886573 CAAATAATTA
** * *
886583 GAATTTTTCTAAGTCATAGGGGCATAACTCTGTCAAAAATTGCACAATCGTACCCAATATTAAAC
1 GAATTTTTCTAAGTCATAGGACCATAACTCTGTCAAAAATTGCACAATCATACCCAAAATTAAAC
* *
886648 TGGACCTAGATATTATCATGATAAATCTGTATACAAAATTTCAT-TTCAATATGTTCATCCTCTG
66 TGGACCTAGATATTATCATGATAAACCTGTATACAAAATTTCATATT-AATATGTGCATCCTCTG
*
886712 CGAAGAAAATGAGCGGAAACTGCAAAAAACTCACAG
130 CAAAGAAAATGAGCGGAAACTGCAAAAAACTCACAG
* ***
886748 GAATTTTTCTACGTCCA-AGGACCATAACTCTGTCAAAAATTGCTTGATCATACCCAAAATTAAA
1 GAATTTTTCTAAGT-CATAGGACCATAACTCTGTCAAAAATTGCACAATCATACCCAAAATTAAA
* * * **
886812 CTTGACTTAGATATTAT-TTAGATAAACCTGTATACCGAATTTCATATTAATATGTGCATCCTCT
65 CTGGACCTAGATATTATCAT-GATAAACCTGTATACAAAATTTCATATTAATATGTGCATCCTCT
886876 GCAAAGAAAAT
129 GCAAAGAAAAT
886887 AAAACATAGG
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
164 1 0.01
165 115 0.96
166 4 0.03
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (165 bp):
GAATTTTTCTAAGTCATAGGACCATAACTCTGTCAAAAATTGCACAATCATACCCAAAATTAAAC
TGGACCTAGATATTATCATGATAAACCTGTATACAAAATTTCATATTAATATGTGCATCCTCTGC
AAAGAAAATGAGCGGAAACTGCAAAAAACTCACAG
Found at i:887612 original size:15 final size:15
Alignment explanation
Indices: 887477--887663 Score: 90
Period size: 15 Copynumber: 11.5 Consensus size: 15
887467 GATAAAGTAA
* *
887477 AATATTATATAATAC
1 AATATCATATTATAC
*
887492 AATATTATATTATAC
1 AATATCATATTATAC
*
887507 ATATGGTATCATATGATAC
1 A-A---TATCATATTATAC
*
887526 AATAAT-ATATTTTAC
1 AAT-ATCATATTATAC
**
887541 AATATCATACAATAC
1 AATATCATATTATAC
*
887556 AATTTCATGTGATGTGATA-
1 AATATCA--T-AT-T-ATAC
887575 AATATCATATTATAAACC
1 AATATCATATTAT--A-C
887593 AATATCATATTATAC
1 AATATCATATTATAC
* *
887608 AATATCGTATGATAC
1 AATATCATATTATAC
* *
887623 GATATTATATAATATAAC
1 AATATCATAT--TAT-AC
*
887641 AGTATCATATTATAC
1 AATATCATATTATAC
*
887656 AATTTCAT
1 AATATCAT
887664 GTGATATAAT
Statistics
Matches: 131, Mismatches: 23, Indels: 36
0.69 0.12 0.19
Matches are distributed among these distances:
14 4 0.03
15 68 0.52
16 10 0.08
17 4 0.03
18 24 0.18
19 18 0.14
20 3 0.02
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (15 bp):
AATATCATATTATAC
Found at i:887669 original size:48 final size:52
Alignment explanation
Indices: 887540--887669 Score: 142
Period size: 52 Copynumber: 2.6 Consensus size: 52
887530 ATATATTTTA
** ** *
887540 CAATATCATACAATACAATTTCATGTGATGTGATAAATATCATATTATAAAC
1 CAATATCATATTATACAATTTCATGTGATACGATAAATATCATAATATAAAC
* * * *
887592 CAATATCATATTATACAATATCGTATGATACGAT-ATTAT-ATAATAT-AA-
1 CAATATCATATTATACAATTTCATGTGATACGATAAATATCATAATATAAAC
*
887640 CAGTATCATATTATACAATTTCATGTGATA
1 CAATATCATATTATACAATTTCATGTGATA
887670 TAATTCTCTA
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
48 26 0.40
49 2 0.03
50 6 0.09
51 4 0.06
52 27 0.42
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (52 bp):
CAATATCATATTATACAATTTCATGTGATACGATAAATATCATAATATAAAC
Found at i:889183 original size:177 final size:177
Alignment explanation
Indices: 888653--889220 Score: 738
Period size: 177 Copynumber: 3.2 Consensus size: 177
888643 CTTAACCATA
* * *
888653 TCCAGCATCTGAAACCTATGGCT-ATGATTCAGCATTCAAACCTGTCAGGTGCATCAGTATCATA
1 TCCAGCATCCGAAACCTATGGCTCA-GATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATA
* * * * *
888717 AGACGCACCATCCATGGAAGTCTGGTGAAGTTA-GGACAAGTAATAACTAAGATATAAT-C-ATC
65 AGACACACCATCCATGGAAGTCTGGTGAAG-TACGGACCAGCAGTAACTTAGATAT--TGCTATC
* *** * *
888779 AGAGGGCACCTGTTTCAAAAACTTTAACCAGCTCTAAAAACCTTAACCTCC
127 AAAGGGCACCTGCAACAAAAACTTTAACCAGCTCCAAAACCCTTAACCTCC
* * *
888830 TTCAGGATCCGAAACGTATGGCTCAGATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATAA
1 TCCAGCATCCGAAACCTATGGCTCAGATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATAA
*
888895 GACACACCATCTATGGAAGTCTGGTGAAGTACGGACCAGCAGTAACTTAGATATTGCTATCAAAG
66 GACACACCATCCATGGAAGTCTGGTGAAGTACGGACCAGCAGTAACTTAGATATTGCTATCAAAG
* *
888960 GGCACCTGCAACAAAAACTTTAACCAGCACGAAAACCCTTAACCTCC
131 GGCACCTGCAACAAAAACTTTAACCAGCTCCAAAACCCTTAACCTCC
* *
889007 TCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAA
1 TCCAGCATCCGAAACCTATGGCTCAGATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATAA
* * *
889072 GACACACCATCCATGCAAGTTTGGTGAAGTACGGACCTGCAGTAACTTAGATATTGCTATCAAAG
66 GACACACCATCCATGGAAGTCTGGTGAAGTACGGACCAGCAGTAACTTAGATATTGCTATCAAAG
* * * *
889137 GGCACCTGCAACAAAAACTTTAACCTGGTCCAACACCCTCAA---CC
131 GGCACCTGCAACAAAAACTTTAACCAGCTCCAAAACCCTTAACCTCC
* ** *
889181 TCCAGCATCTGAAATTTA-GGACTCAGATTCAGCATCCAAG
1 TCCAGCATCCGAAACCTATGG-CTCAGATTCAGCATTCAAG
889221 TCTTTCAAGT
Statistics
Matches: 346, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
173 1 0.00
174 34 0.10
175 1 0.00
176 3 0.01
177 306 0.88
178 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (177 bp):
TCCAGCATCCGAAACCTATGGCTCAGATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATAA
GACACACCATCCATGGAAGTCTGGTGAAGTACGGACCAGCAGTAACTTAGATATTGCTATCAAAG
GGCACCTGCAACAAAAACTTTAACCAGCTCCAAAACCCTTAACCTCC
Found at i:889297 original size:174 final size:173
Alignment explanation
Indices: 888653--889298 Score: 518
Period size: 177 Copynumber: 3.7 Consensus size: 173
888643 CTTAACCATA
* * * * * * *
888653 TCCAGCATCTGAAACCTATGGCT-ATGATTCAGCATTCAAACCTGTCAGGTGCATCAGTATCATA
1 TCCAGCATCCGAAA-CTATAGCTCA-GATTCAGCACTCAAGCCTGTCAAGTCCATAAGTATCA-A
* * * * * *
888717 AGACGCACCATCCATGGAAGTCTGGTGAAGTTA-GGACAAGTAATAACTAAGATATAAT-C-ATC
63 AGACACACCATCCATGCAAGTTTGGTGAAG-TACAGACAAGCAATAACTTAGATAT--TGCTATC
* *** * * * *
888779 AGAGGGCACCTGTTTCAAAAACTTTAACCAGCTCTAAAAACCTTAACCTCC
125 AAAGGGCACCTGCAACAAAAACTTTAACCAGCACCAAAACCCTCAA-C-CC
* * * * ** * *
888830 TTCAGGATCCGAAACGTATGGCTCAGATTCAGCATTCAAGCCTGTCTGGTGCATCAGTATCATAA
1 TCCAGCATCCGAAAC-TATAGCTCAGATTCAGCACTCAAGCCTGTCAAGTCCATAAGTATCA-AA
* * * * * *
888895 GACACACCATCTATGGAAGTCTGGTGAAGTACGGACCAGCAGTAACTTAGATATTGCTATCAAAG
64 GACACACCATCCATGCAAGTTTGGTGAAGTACAGACAAGCAATAACTTAGATATTGCTATCAAAG
* *
888960 GGCACCTGCAACAAAAACTTTAACCAGCACGAAAACCCTTAACCTCC
129 GGCACCTGCAACAAAAACTTTAACCAGCACCAAAACCCTCAA-C-CC
** * *
889007 TCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAA
1 TCCAGCATCCGAAA-CTATAGCTCAGATTCAGCACTCAAGCCTGTCAAGTCCATAAGTATCA-AA
* ** *
889072 GACACACCATCCATGCAAGTTTGGTGAAGTACGGACCTGCAGTAACTTAGATATTGCTATCAAAG
64 GACACACCATCCATGCAAGTTTGGTGAAGTACAGACAAGCAATAACTTAGATATTGCTATCAAAG
* ** *
889137 GGCACCTGCAACAAAAACTTTAACCTGGTCCAACACCCTCAA-CC
129 GGCACCTGCAACAAAAACTTTAACCAGCACCAAAACCCTCAACCC
* * * *
889181 TCCAGCATCTGAAA-TTTAGGACTCAGATTCAGCA-TCCAAGTCTTTCAAGTCCATAAGTAGGTC
1 TCCAGCATCCGAAACTATA-G-CTCAGATTCAGCACT-CAAGCCTGTCAAGTCCATAAGTA--TC
* ** * * *
889244 -CAGATGCATCATCCATGCAAGTTTGGTGAAGATA-AGACAAGTAATAGCTTAGATA
61 AAAGACACACCATCCATGCAAGTTTGGTGAAG-TACAGACAAGCAATAACTTAGATA
889299 CAGGACCTGC
Statistics
Matches: 407, Mismatches: 50, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
172 3 0.01
173 2 0.00
174 87 0.21
175 3 0.01
176 6 0.01
177 304 0.75
178 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (173 bp):
TCCAGCATCCGAAACTATAGCTCAGATTCAGCACTCAAGCCTGTCAAGTCCATAAGTATCAAAGA
CACACCATCCATGCAAGTTTGGTGAAGTACAGACAAGCAATAACTTAGATATTGCTATCAAAGGG
CACCTGCAACAAAAACTTTAACCAGCACCAAAACCCTCAACCC
Found at i:891381 original size:21 final size:21
Alignment explanation
Indices: 891357--891396 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
891347 TTTTCTGGTT
891357 CTTTGCTGATT-TTTTAGTTGA
1 CTTTGCTG-TTGTTTTAGTTGA
*
891378 CTTTGGTGTTGTTTTAGTT
1 CTTTGCTGTTGTTTTAGTT
891397 TCCTGTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.10, C:0.07, G:0.23, T:0.60
Consensus pattern (21 bp):
CTTTGCTGTTGTTTTAGTTGA
Found at i:891668 original size:55 final size:55
Alignment explanation
Indices: 891582--892293 Score: 895
Period size: 55 Copynumber: 13.0 Consensus size: 55
891572 AATACCTTGT
* * *
891582 TGTGTACACTATAATTTATAGTGCCCTGATTCTGACACCAATCTTTGCCTCCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * * *
891637 TGTGTCCACTTTAATTCATATTGCCCCGATTCTGACACCAACCTTTGCCTCCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * *
891692 TGTGTATACTATAATTTATATTGCCCTGATTCTCACACCACCCTTTGCCTTCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * * * *
891747 TGTGTCCACTTTAATTTATATAGCCCTGATTCGGACGCCACCCTTTGCCTCCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* ** * * *
891802 TGTGTACACTAAAATTTATATTGCCCTGATTCTGACACTGACCTTTACCTTCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * *
891857 TGTG-ACACTATAATTTATGTTGCCCTGATTCTGACACCGACCTTTGCCTCCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * ** * *
891911 TGTGTTCACTATAATTTATATTGCCCCGATTCTCCCACCACCCTTTGCCTTCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * * * *
891966 TGTGTCCTCTTTAATTCATATTGCCCTGATTCTGACACCACCCTGTGCCTCCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
**
892021 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAATTTTTGCCTCCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * *
892076 TGTGTACACTATAATTTATATTGCCCTGATTCTAACACCGACCTTTGCCTCCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * *
892131 TGTGTTCACTATAATTCATATTGCCCTGATTCTGACACCGACCTTTGCCTCCTGC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * * *
892186 TGTGTACACTATAATTTATATTGCCCTGATTTTCACACCACCCTTTGCTTTCTAC
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
* * * * *
892241 TGTGTCCATTTTAATTTATATTGCCCTGATTCTGACAACGACCTTTGCCTCCT
1 TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCT
892294 CCATCTCCAT
Statistics
Matches: 563, Mismatches: 93, Indels: 2
0.86 0.14 0.00
Matches are distributed among these distances:
54 49 0.09
55 514 0.91
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (55 bp):
TGTGTACACTATAATTTATATTGCCCTGATTCTGACACCAACCTTTGCCTCCTAC
Found at i:904281 original size:2 final size:2
Alignment explanation
Indices: 904274--904309 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
904264 AGACTGAAAA
904274 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
904310 ATGCTTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:906867 original size:9 final size:9
Alignment explanation
Indices: 906850--906878 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
906840 ATGCCTCTCT
906850 CCCCC-CCC
1 CCCCCACCC
906858 CCCCCACCC
1 CCCCCACCC
906867 CCCCCACCC
1 CCCCCACCC
906876 CCC
1 CCC
906879 NNNNNNNNNN
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.07, C:0.93, G:0.00, T:0.00
Consensus pattern (9 bp):
CCCCCACCC
Found at i:913072 original size:2 final size:2
Alignment explanation
Indices: 913065--913101 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
913055 CTTATTCATT
913065 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
913102 CAATTGAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:924476 original size:12 final size:12
Alignment explanation
Indices: 924459--924485 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
924449 GTGAAATAAC
924459 GAATTTTAATAT
1 GAATTTTAATAT
924471 GAATTTTAATAT
1 GAATTTTAATAT
924483 GAA
1 GAA
924486 GCGGTACCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (12 bp):
GAATTTTAATAT
Found at i:927387 original size:1 final size:1
Alignment explanation
Indices: 927381--927405 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
927371 TTTCATGATT
927381 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
927406 ATTGGGCAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:930056 original size:28 final size:27
Alignment explanation
Indices: 929997--930296 Score: 300
Period size: 28 Copynumber: 10.7 Consensus size: 27
929987 AAAATAAGGG
*
929997 TACATTCCCTAGCCCATC-AAACATTGA
1 TACATCCCCTA-CCCATCAAAACATTGA
*
930024 CACATCCCCTACCTCATCAAAACATTGA
1 TACATCCCCTACC-CATCAAAACATTGA
* *
930052 TACATTCCCTACCCTATCAAGACATTGA
1 TACATCCCCTACCC-ATCAAAACATTGA
* ** *
930080 TGCATCCTGTACCTCATCAAAACAATGA
1 TACATCCCCTACC-CATCAAAACATTGA
930108 TACA-CTCCCTACCCCATCAAAACATTGA
1 TACATC-CCCTA-CCCATCAAAACATTGA
*
930136 TACATTCCCTACCCTATCAAAACATTGA
1 TACATCCCCTACCC-ATCAAAACATTGA
* * *
930164 TGCATCCCGTACCTCATCGAAACATTGA
1 TACATCCCCTACC-CATCAAAACATTGA
*
930192 TACATTCCCTACCCCCATCAAAACATTGA
1 TACATCCCCTA--CCCATCAAAACATTGA
* *
930221 TACATTCCCTACCCCATCAAAACAATGA
1 TACATCCCCTA-CCCATCAAAACATTGA
* **
930249 TACA-CTCCCTACCCATCAACACAAGGA
1 TACATC-CCCTACCCATCAAAACATTGA
930276 TACATCCCCTATCCCATCAAA
1 TACATCCCCTA-CCCATCAAA
930297 CAATTATAAA
Statistics
Matches: 230, Mismatches: 29, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
26 2 0.01
27 41 0.18
28 157 0.68
29 28 0.12
30 2 0.01
ACGTcount: A:0.35, C:0.36, G:0.06, T:0.24
Consensus pattern (27 bp):
TACATCCCCTACCCATCAAAACATTGA
Found at i:930097 original size:56 final size:55
Alignment explanation
Indices: 929997--930325 Score: 346
Period size: 56 Copynumber: 5.9 Consensus size: 55
929987 AAAATAAGGG
* * *
929997 TACATTCCCTAGCCCATCAAACATTGACACATCCCCTACCTCATCAAAACATTGA
1 TACATTCCCTACCCCATCAAACATTGATACATTCCCTACCTCATCAAAACATTGA
* * * *
930052 TACATTCCCTACCCTATCAAGACATTGATGCA-TCCTGTACCTCATCAAAACAATGA
1 TACATTCCCTACCCCATCAA-ACATTGATACATTCC-CTACCTCATCAAAACATTGA
*
930108 TACACTCCCTACCCCATCAAAACATTGATACATTCCCTACC-CTATCAAAACATTGA
1 TACATTCCCTACCCCATC-AAACATTGATACATTCCCTACCTC-ATCAAAACATTGA
* * *
930164 TGCA-TCCCGTACCTCATCGAAACATTGATACATTCCCTACCCCCATCAAAACATTGA
1 TACATTCCC-TACCCCATC-AAACATTGATACATTCCCTA-CCTCATCAAAACATTGA
* * * **
930221 TACATTCCCTACCCCATCAAAACAATGATACACTCCCTACC-CATCAACACAAGGA
1 TACATTCCCTACCCCATC-AAACATTGATACATTCCCTACCTCATCAAAACATTGA
* * * *
930276 TACATCCCCTATCCCATCAAACAATT-ATA-AATCCCTAACCTCAACAAAAC
1 TACATTCCCTACCCCATCAAAC-ATTGATACATTCCCT-ACCTCATCAAAAC
930326 GGGATTTATA
Statistics
Matches: 233, Mismatches: 29, Indels: 24
0.81 0.10 0.08
Matches are distributed among these distances:
53 6 0.03
54 10 0.04
55 61 0.26
56 102 0.44
57 49 0.21
58 5 0.02
ACGTcount: A:0.36, C:0.35, G:0.05, T:0.23
Consensus pattern (55 bp):
TACATTCCCTACCCCATCAAACATTGATACATTCCCTACCTCATCAAAACATTGA
Found at i:930118 original size:84 final size:83
Alignment explanation
Indices: 930011--930296 Score: 357
Period size: 84 Copynumber: 3.4 Consensus size: 83
930001 TTCCCTAGCC
* * * *
930011 CATC-AAACATTGACACATCCCCTA-CCTCATCAAAACATTGATACATTCCCTACCCTATCAAGA
1 CATCAAAACAATGATACAT-CCCTACCCCCATCAAAACATTGATACATTCCCTACCCTATCAAAA
930074 CATTGATGCATCCTGTACCT
65 CATTGATGCATCC-GTACCT
930094 CATCAAAACAATGATACACTCCCTA-CCCCATCAAAACATTGATACATTCCCTACCCTATCAAAA
1 CATCAAAACAATGATACA-TCCCTACCCCCATCAAAACATTGATACATTCCCTACCCTATCAAAA
930158 CATTGATGCATCCCGTACCT
65 CATTGATGCAT-CCGTACCT
* * *
930178 CATCGAAACATTGATACATTCCCTACCCCCATCAAAACATTGATACATTCCCTACCCCATCAAAA
1 CATCAAAACAATGATACA-TCCCTACCCCCATCAAAACATTGATACATTCCCTACCCTATCAAAA
* * *
930243 CAATGATACACTCCCTACC-
65 CATTGATGCA-TCCGTACCT
* * *
930262 CATCAACACAAGGATACATCCCCTA-TCCCATCAAA
1 CATCAAAACAATGATACAT-CCCTACCCCCATCAAA
930297 CAATTATAAA
Statistics
Matches: 181, Mismatches: 16, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
83 14 0.08
84 111 0.61
85 55 0.30
86 1 0.01
ACGTcount: A:0.35, C:0.35, G:0.06, T:0.23
Consensus pattern (83 bp):
CATCAAAACAATGATACATCCCTACCCCCATCAAAACATTGATACATTCCCTACCCTATCAAAAC
ATTGATGCATCCGTACCT
Found at i:931181 original size:134 final size:135
Alignment explanation
Indices: 931029--931375 Score: 430
Period size: 133 Copynumber: 2.6 Consensus size: 135
931019 ACCCCCCCCC
* *
931029 CCCCCCCAAACAGGAAGTGCCCGAATATCTTGAAAACGGTTAAGAACCCCACCCCTTAACCATAT
1 CCCCCTCAAACAGGAAGTGCCCGAATATCTTGAAAACGGTTAAGAACCCCACCCCTAAACCATAT
* ** * **
931094 ATAATCTTGTTCCATGTGTTAAAGGGCGTCAAATGGTATGTAGGTCATGGG--CCCTGGGGGTGG
66 ATATTCTTGTTCCATGTGTTAAAGGGAATCAAATGGTATGTAGGTCATGGGTCCCCAGGCTG-GG
*
931157 TCCTGA
130 TCCAGA
* * * * * *
931163 CCCCCTCAAACAGAAAGTGTCCGGATATCTT-AAAAAGGTGAAGATCCCCACCCCTAAACCATAT
1 CCCCCTCAAACAGGAAGTGCCCGAATATCTTGAAAACGGTTAAGAACCCCACCCCTAAACCATAT
* * * *
931227 ATATTCTTATTCCTTGTGTTAAGGGGAATCACATGGTATGTAGGTCATGGGTCCCCAGGCTGGGT
66 ATATTCTTGTTCCATGTGTTAAAGGGAATCAAATGGTATGTAGGTCATGGGTCCCCAGGCTGGGT
931292 CCAGA
131 CCAGA
* * * * * *
931297 CCCCCTTAAAACAGGAAGTGCCCAAATAACTTGAAAACGGTTGAGAAACCCACCCGTAAACCATA
1 CCCCC-TCAAACAGGAAGTGCCCGAATATCTTGAAAACGGTTAAGAACCCCACCCCTAAACCATA
931362 TATATTCTTGTTCC
65 TATATTCTTGTTCC
931376 TTGGGTCATG
Statistics
Matches: 177, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
133 73 0.41
134 39 0.22
135 26 0.15
136 39 0.22
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (135 bp):
CCCCCTCAAACAGGAAGTGCCCGAATATCTTGAAAACGGTTAAGAACCCCACCCCTAAACCATAT
ATATTCTTGTTCCATGTGTTAAAGGGAATCAAATGGTATGTAGGTCATGGGTCCCCAGGCTGGGT
CCAGA
Found at i:931923 original size:57 final size:56
Alignment explanation
Indices: 931767--932623 Score: 421
Period size: 57 Copynumber: 14.7 Consensus size: 56
931757 CTCTAAATCT
* * * *
931767 AACCCCATCAAAACAAGGATACATTCCAAAACCCTATCAAATCAATTAGGATACATTACCA
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAA-C-A--AGGATACATT-CTA
* * * *
931828 AGCCCCATC--AACAAGGATACATTCCCAAACCCTATCAAAGCAAGGATACATTCTT
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAA-CAAGGATACATTCTA
* * * * *
931883 AACCTCATCAAAATAAGGGTACATTGCCAAGCCTTATCAAAAAGAGGATTCGATCATTCTCA
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAACA-AGGA-T--A-CATTCT-A
* * *
931945 AACCCCATCAAAACAAGAATACATTCCCAAACTCTT-TCAAAACAAAGATACA-T-TA
1 AACCCCATCAAAATAAGGATACATTCCCAAAC-CTTATC-AAACAAGGATACATTCTA
* * * * * * *
932000 CCACCCTAATCAAAACAAGGATATATTCCCAATTCC-CATCAAAGCAAGGATACATTCCA
1 -AACCC-CATCAAAATAAGGATACATTCCCAA-ACCTTATCAAA-CAAGGATACATTCTA
* * * *
932059 AACCCCATCAAAATAAAGG-TACATTGCCAAACCTTATTGAAA-AGAGAATTCATTCTCA
1 AACCCCATCAAAAT-AAGGATACATTCCCAAACCTTA-TCAAACA-AGGATACATTCT-A
* ** **
932117 AACCCAATCAAAATAAGGATACATTCCCAAACCACATCAAAACAAGGATACATTCCCG
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATC-AAACAAGGATACATT-CTA
* * * * * * ** *
932175 AACGCCATC-AAACAATGATACATTCGCAAACCCTATAAAAGCTGGGATACATTCGAAA
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAA-CAAGGATACATTC--TA
* * * * *
932233 AACCCAATCAGAATACTTAGTAAGGGTACATTGCCAAACCTAATCAAA-AAGAGAATTCATTCTC
1 AACCCCATC--AA-A---A-TAAGGATACATTCCCAAACCTTATCAAACAAG-G-ATACATTCT-
932297 A
56 A
* * ** * *
932298 AATCCCATCAAAACAAGGATACATTCCCAAACCGCATCAAAAGAAGGATACATTCCAA
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATC-AAACAAGGATACATT-CTA
* * * ** ** *
932356 AACCTCAT-AAAAAAAGGATACATTTCC-ATTCAAATCAAAACAAGGATACATTCCCA
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATC-AAACAAGGATACATT-CTA
* * * * ** **
932412 AACTCCATAAAAAAACAAGGATACATTCCCGAACCCCATCAAAACAAGGATACATTCCCG
1 AACCCCAT--CAAAATAAGGATACATTCCCAAACCTTATC-AAACAAGGATACATT-CTA
* * *
932472 AACCCCATCAAAACAAGGATACATTCAC-AACCTCTATCAAAACAAGGGTACATTCCCT-
1 AACCCCATCAAAATAAGGATACATTCCCAAACCT-TATC-AAACAAGGATACATT--CTA
* * * * * * **
932530 AACCTCATC-AAACAAGGATGCATTCCCTAACCCTATCAAAGCATGGATACATTCCC
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAA-CAAGGATACATTCTA
* * *
932586 AACCCCATCAAAATAAGGGTATATTGCCAAACCTTATC
1 AACCCCATCAAAATAAGGATACATTCCCAAACCTTATC
932624 GAAAAGAGAA
Statistics
Matches: 617, Mismatches: 126, Indels: 110
0.72 0.15 0.13
Matches are distributed among these distances:
55 10 0.02
56 66 0.11
57 199 0.32
58 152 0.25
59 59 0.10
60 35 0.06
61 16 0.03
62 33 0.05
63 9 0.01
64 1 0.00
65 10 0.02
66 27 0.04
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (56 bp):
AACCCCATCAAAATAAGGATACATTCCCAAACCTTATCAAACAAGGATACATTCTA
Found at i:932068 original size:28 final size:29
Alignment explanation
Indices: 931767--932618 Score: 595
Period size: 29 Copynumber: 29.1 Consensus size: 29
931757 CTCTAAATCT
*
931767 AACCCCATCAAAACAAGGATACATTCCAA
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
931796 AACCCTATCAAATCAATTAGGATACATTACCA
1 AACCCCATCAAAAC-A--AGGATACATTCCCA
*
931828 AGCCCCATC--AACAAGGATACATTCCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* * **
931855 AACCCTATCAAAGCAAGGATACATT-CTT
1 AACCCCATCAAAACAAGGATACATTCCCA
* * * *
931883 AACCTCATCAAAATAAGGGTACATTGCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* ** *
931912 AGCCTTATCAAAA-AGAGGATTCGATCATTCTCA
1 AACCCCATCAAAACA-AGGA-T--A-CATTCCCA
*
931945 AACCCCATCAAAACAAGAATACATTCCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* ** * *
931974 AACTCTTTCAAAACAAAGATACATTACC-
1 AACCCCATCAAAACAAGGATACATTCCCA
* *
932002 -ACCCTAATCAAAACAAGGATATATTCCCA
1 AACCC-CATCAAAACAAGGATACATTCCCA
** *
932031 ATTCCCATCAAAGCAAGGATACATT-CCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* *
932059 AACCCCATCAAAATAAAGG-TACATTGCCA
1 AACCCCATCAAAA-CAAGGATACATTCCCA
** * * * * *
932088 AACCTTATTGAAAA-GAGAATTCATTCTCA
1 AACCCCA-TCAAAACAAGGATACATTCCCA
* *
932117 AACCCAATCAAAATAAGGATACATTCCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* *
932146 AACCACATCAAAACAAGGATACATTCCCG
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932175 AACGCCATC-AAACAATGATACATTCGCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* ** **
932203 AACCCTAT-AAAAGCTGGGATACATTCGAAA
1 AACCCCATCAAAA-CAAGGATACATTC-CCA
* * *
932233 AACCCAATCAGAATACTTAGTAAGGGTACATTGCCA
1 AACCCCATCA-AA-AC-----AAGGATACATTCCCA
** * * *
932269 AACCTAATCAAAA-AGAGAATTCATTCTCA
1 AACCCCATCAAAACA-AGGATACATTCCCA
*
932298 AATCCCATCAAAACAAGGATACATTCCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932327 AACCGCATCAAAAGAAGGATACATTCCAA
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932356 AACCTCAT-AAAAAAAGGATACATTTCC-
1 AACCCCATCAAAACAAGGATACATTCCCA
** **
932383 ATTCAAATCAAAACAAGGATACATTCCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932412 AACTCCATAAAAAAACAAGGATACATTCCCG
1 AACCCCAT--CAAAACAAGGATACATTCCCA
*
932443 AACCCCATCAAAACAAGGATACATTCCCG
1 AACCCCATCAAAACAAGGATACATTCCCA
*
932472 AACCCCATCAAAACAAGGATACATTCAC-
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932500 AACCTCTATCAAAACAAGGGTACATTCCCT
1 AACC-CCATCAAAACAAGGATACATTCCCA
* * *
932530 AACCTCATC-AAACAAGGATGCATTCCCT
1 AACCCCATCAAAACAAGGATACATTCCCA
* * *
932558 AACCCTATCAAAGCATGGATACATTCCC-
1 AACCCCATCAAAACAAGGATACATTCCCA
* * * *
932586 AACCCCATCAAAATAAGGGTATATTGCCA
1 AACCCCATCAAAACAAGGATACATTCCCA
932615 AACC
1 AACC
932619 TTATCGAAAA
Statistics
Matches: 638, Mismatches: 144, Indels: 82
0.74 0.17 0.09
Matches are distributed among these distances:
27 27 0.04
28 174 0.27
29 319 0.50
30 25 0.04
31 27 0.04
32 24 0.04
33 20 0.03
34 2 0.00
35 2 0.00
36 10 0.02
37 8 0.01
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (29 bp):
AACCCCATCAAAACAAGGATACATTCCCA
Found at i:932668 original size:29 final size:28
Alignment explanation
Indices: 932636--932744 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 28
932626 AAAGAGAACT
*
932636 CCATCAAAACAAGGATACATTCCAAAACC
1 CCATCAAAACAAAGATACATTCC-AAACC
* * * *
932665 CCATTAAAACAAAAATAAATTTCCAAACA
1 CCATCAAAACAAAGATACA-TTCCAAACC
* *
932694 CGATCAAAACAAAGATACATTCTC-AATC
1 CCATCAAAACAAAGATACATTC-CAAACC
** *
932722 AAATCAAAACAAGGATACATTCC
1 CCATCAAAACAAAGATACATTCC
932745 CGAACCAAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.02
28 24 0.38
29 35 0.55
30 4 0.06
ACGTcount: A:0.51, C:0.25, G:0.06, T:0.18
Consensus pattern (28 bp):
CCATCAAAACAAAGATACATTCCAAACC
Found at i:932731 original size:28 final size:29
Alignment explanation
Indices: 932638--932762 Score: 92
Period size: 29 Copynumber: 4.3 Consensus size: 29
932628 AGAGAACTCC
* ** **
932638 ATCAAAACAAGGATACATTCCAAAACCCC
1 ATCAAAACAAAGATACATTCCCGAACCAA
* * * * * *
932667 ATTAAAACAAAAATAAATTTCC-AAACACG
1 ATCAAAACAAAGATACATTCCCGAACCA-A
* *
932696 ATCAAAACAAAGATACATTCTC-AATCAA
1 ATCAAAACAAAGATACATTCCCGAACCAA
*
932724 ATCAAAACAAGGATACATTCCCGAACCAA
1 ATCAAAACAAAGATACATTCCCGAACCAA
*
932753 AACAAAACAA
1 ATCAAAACAA
932763 GAGGCCCATG
Statistics
Matches: 74, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
28 23 0.31
29 51 0.69
ACGTcount: A:0.54, C:0.24, G:0.06, T:0.16
Consensus pattern (29 bp):
ATCAAAACAAAGATACATTCCCGAACCAA
Found at i:932761 original size:29 final size:28
Alignment explanation
Indices: 932698--932763 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
932688 CAAACACGAT
* * * *
932698 CAAAACAAAGATACATTCTCAATCAAAT
1 CAAAACAAGGATACATTCCCAACCAAAA
932726 CAAAACAAGGATACATTCCCGAACCAAAA
1 CAAAACAAGGATACATTCCC-AACCAAAA
932755 CAAAACAAG
1 CAAAACAAG
932764 AGGCCCATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.55, C:0.24, G:0.08, T:0.14
Consensus pattern (28 bp):
CAAAACAAGGATACATTCCCAACCAAAA
Found at i:935600 original size:2 final size:2
Alignment explanation
Indices: 935593--935619 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
935583 NNNNNNNNNN
935593 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
935620 ATTGAGCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:940364 original size:3 final size:3
Alignment explanation
Indices: 940356--940396 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
940346 GATAAATCAT
940356 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
940397 ATTCACATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:952346 original size:22 final size:22
Alignment explanation
Indices: 952321--952363 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
952311 AAGAATATTT
*
952321 TTGAATTTGATATAACGAATTC
1 TTGAATTTGATAAAACGAATTC
*
952343 TTGAATTTGTTAAAACGAATT
1 TTGAATTTGATAAAACGAATT
952364 TAAATCGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (22 bp):
TTGAATTTGATAAAACGAATTC
Found at i:952378 original size:19 final size:19
Alignment explanation
Indices: 952351--952423 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
952341 TCTTGAATTT
*
952351 GTTAAAACGAATTTAAATC
1 GTTATAACGAATTTAAATC
*
952370 GTTATAACGAATTGTTGAATCC
1 GTTATAACGAA-T-TTAAAT-C
*
952392 GTTATAACGAA-TTAAATTT
1 GTTATAACGAATTTAAA-TC
*
952411 GTTATAACAAATT
1 GTTATAACGAATT
952424 NCAATTAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
19 24 0.55
20 3 0.07
21 5 0.11
22 12 0.27
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (19 bp):
GTTATAACGAATTTAAATC
Found at i:952388 original size:41 final size:41
Alignment explanation
Indices: 952331--952423 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 41
952321 TTGAATTTGA
**
952331 TATAACGAATTCTTGAATTTGTTAAAACGAATTTAAA-TCGT
1 TATAACGAATTCTTGAATCCGTTAAAACGAA-TTAAATTCGT
* * *
952372 TATAACGAATTGTTGAATCCGTTATAACGAATTAAATTTGT
1 TATAACGAATTCTTGAATCCGTTAAAACGAATTAAATTCGT
*
952413 TATAACAAATT
1 TATAACGAATT
952424 NCAATTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 5 0.11
41 40 0.89
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.39
Consensus pattern (41 bp):
TATAACGAATTCTTGAATCCGTTAAAACGAATTAAATTCGT
Found at i:952397 original size:22 final size:20
Alignment explanation
Indices: 952331--952404 Score: 78
Period size: 22 Copynumber: 3.5 Consensus size: 20
952321 TTGAATTTGA
*
952331 TATAACGAATTCTTGAATTTGT
1 TATAACGAATT-TTGAA-TCGT
* *
952353 TAAAACGAA-TTTAAATCGT
1 TATAACGAATTTTGAATCGT
952372 TATAACGAATTGTTGAATCCGT
1 TATAACGAATT-TTGAAT-CGT
952394 TATAACGAATT
1 TATAACGAATT
952405 AAATTTGTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 11 0.25
20 5 0.11
21 6 0.14
22 22 0.50
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (20 bp):
TATAACGAATTTTGAATCGT
Found at i:958240 original size:21 final size:21
Alignment explanation
Indices: 958213--958619 Score: 211
Period size: 21 Copynumber: 19.2 Consensus size: 21
958203 ATAAATGCAA
958213 AACTTTCGCGATATAACGCGT
1 AACTTTCGCGATATAACGCGT
* * ** * *
958234 TAGTTTCGTAATAAAAAAACGCGA
1 AACTTTCGCGAT---ATAACGCGT
*
958258 AACTTTCGCAATATAACGCGT
1 AACTTTCGCGATATAACGCGT
**
958279 AACTTTCGCGA-ATAAACGCAA
1 AACTTTCGCGATAT-AACGCGT
*
958300 AACTTTCGCGATATGACGCGT
1 AACTTTCGCGATATAACGCGT
* * *
958321 TAGTTTCGC-AAATAAACGCGT
1 AACTTTCGCGATAT-AACGCGT
* * * *
958342 AACTTTCTC-AAATAAACACGA
1 AACTTTCGCGATAT-AACGCGT
* *** *
958363 AACTTTTGCGA-ATAAATAAGA
1 AACTTTCGCGATAT-AACGCGT
*
958384 AACTTTCGCGATATGACGCGT
1 AACTTTCGCGATATAACGCGT
* * * *
958405 TAGTTTCGC-AAAGAAACGCGT
1 AACTTTCGCGATA-TAACGCGT
* * * *
958426 AACTTTCAC-AAATAAACACGA
1 AACTTTCGCGATAT-AACGCGT
958447 AACTTTCGCGATATAACGCGT
1 AACTTTCGCGATATAACGCGT
*
958468 AACTTTCGCGATATAACGCCT
1 AACTTTCGCGATATAACGCGT
* *
958489 AACTTTCGTGA-ATAAACGCGA
1 AACTTTCGCGATAT-AACGCGT
*
958510 AACTTTCGCAATATAACGCGT
1 AACTTTCGCGATATAACGCGT
* * *
958531 AAGTTTCGCGA-ATAAACACGA
1 AACTTTCGCGATAT-AACGCGT
* * * *
958552 AACTTTTGCGGTTTAACGCGA
1 AACTTTCGCGATATAACGCGT
* *
958573 AACTTTCGCAAT-TAAACGCGA
1 AACTTTCGCGATAT-AACGCGT
** * *
958594 AACTTTCATGATTTAACGCGA
1 AACTTTCGCGATATAACGCGT
958615 AACTT
1 AACTT
958620 AAATATATAT
Statistics
Matches: 296, Mismatches: 73, Indels: 34
0.73 0.18 0.08
Matches are distributed among these distances:
20 12 0.04
21 256 0.86
22 12 0.04
24 16 0.05
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (21 bp):
AACTTTCGCGATATAACGCGT
Found at i:958387 original size:84 final size:84
Alignment explanation
Indices: 958212--958600 Score: 390
Period size: 84 Copynumber: 4.6 Consensus size: 84
958202 AATAAATGCA
* * *
958212 AAACTTTCGCGATATAACGCGTTAGTTTCGTAATAAAAAAACGCGAAACTTTCGCAATATAACGC
1 AAACTTTCGCGATATAACGCGTTAGTTTCG---CAAATAAACGCGAAACTTTCGCAATATAACAC
* *
958277 GTAACTTTCGCGAATAAACGCA-
63 GAAACTTTCGCGAATAAAC-AAG
* * *
958299 AAACTTTCGCGATATGACGCGTTAGTTTCGCAAATAAACGCGTAACTTTCTCAA-ATAAACACGA
1 AAACTTTCGCGATATAACGCGTTAGTTTCGCAAATAAACGCGAAACTTTCGCAATAT-AACACGA
* *
958363 AACTTTTGCGAATAAATAAG
65 AACTTTCGCGAATAAACAAG
* * * *
958383 AAACTTTCGCGATATGACGCGTTAGTTTCGCAAAGAAACGCGTAACTTTCACAA-ATAAACACGA
1 AAACTTTCGCGATATAACGCGTTAGTTTCGCAAATAAACGCGAAACTTTCGCAATAT-AACACGA
**
958447 AACTTTCGCG-ATATAACGCG
65 AACTTTCGCGAATA-AACAAG
* * * * ** * *
958467 TAACTTTCGCGATATAACGCCTAACTTTCGTGAATAAACGCGAAACTTTCGCAATATAACGCGTA
1 AAACTTTCGCGATATAACGCGTTAGTTTCGCAAATAAACGCGAAACTTTCGCAATATAACACGAA
* *
958532 AGTTTCGCGAATAAACACG
66 ACTTTCGCGAATAAACAAG
* * * ** * *
958551 AAACTTTTGCGGTTTAACGCGAAACTTTCGCAATTAAACGCGAAACTTTC
1 AAACTTTCGCGATATAACGCGTTAGTTTCGCAAATAAACGCGAAACTTTC
958601 ATGATTTAAC
Statistics
Matches: 258, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
83 6 0.02
84 218 0.84
85 5 0.02
87 29 0.11
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (84 bp):
AAACTTTCGCGATATAACGCGTTAGTTTCGCAAATAAACGCGAAACTTTCGCAATATAACACGAA
ACTTTCGCGAATAAACAAG
Found at i:958391 original size:63 final size:63
Alignment explanation
Indices: 958250--958600 Score: 305
Period size: 63 Copynumber: 5.6 Consensus size: 63
958240 CGTAATAAAA
* * * *
958250 AAACGCGAAACTTTCGCAATATAACGCGTAACTTTCGCGAATAAACGCAAAACTTTCGCG-AT
1 AAACACGAAACTTTCGCAATATAACGCGTAACTTTCGCAAATAAACACGAAACTTTCGCGAAT
* * ** * * *
958312 ATGACGCGTTAGTTTCGCAA-ATAAACGCGTAACTTTCTCAAATAAACACGAAACTTTTGCGAAT
1 A-AACACGAAACTTTCGCAATAT-AACGCGTAACTTTCGCAAATAAACACGAAACTTTCGCGAAT
* * * * * * * * * * *
958376 AAATAAGAAACTTTCGCGATATGACGCGTTAGTTTCGCAAAGAAACGCGTAACTTTCACAAAT
1 AAACACGAAACTTTCGCAATATAACGCGTAACTTTCGCAAATAAACACGAAACTTTCGCGAAT
* * * ** *
958439 AAACACGAAACTTTCGCGATATAACGCGTAACTTTCGC-GATATAACGCCTAACTTTCGTGAAT
1 AAACACGAAACTTTCGCAATATAACGCGTAACTTTCGCAAATA-AACACGAAACTTTCGCGAAT
* * * * **
958502 AAACGCGAAACTTTCGCAATATAACGCGTAAGTTTCGCGAATAAACACGAAACTTTTGCGGTT
1 AAACACGAAACTTTCGCAATATAACGCGTAACTTTCGCAAATAAACACGAAACTTTCGCGAAT
* * *
958565 TAACGCGAAACTTTCGCAAT-TAAACGCGAAACTTTC
1 AAACACGAAACTTTCGCAATAT-AACGCGTAACTTTC
958601 ATGATTTAAC
Statistics
Matches: 230, Mismatches: 52, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
62 6 0.03
63 216 0.94
64 8 0.03
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (63 bp):
AAACACGAAACTTTCGCAATATAACGCGTAACTTTCGCAAATAAACACGAAACTTTCGCGAAT
Found at i:958609 original size:42 final size:41
Alignment explanation
Indices: 958202--958619 Score: 291
Period size: 42 Copynumber: 9.9 Consensus size: 41
958192 TTTTTCCGCG
* * ** * *
958202 AATAAATGCAAAACTTTCGCGATATAACGCGTTAGTTTCGT
1 AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
* *
958243 AATAAAAAAACGCGAAACTTTCGCAATATAACGCGTAACTTTCGC
1 AAT----AAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
* * ** *
958288 GAATAAACGCAAAACTTTCGCGATATGACGCGTTAGTTTCGC
1 -AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
* * * * *
958330 AAATAAACGCGTAACTTTCTC-AAATAAACACGAAACTTTTGC
1 -AATAAACGCGAAACTTTCGCGATAT-AACGCGAAACTTTCGC
*** * ** *
958372 GAATAAATAAGAAACTTTCGCGATATGACGCGTTAGTTTCGC
1 -AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
* * * * *
958414 AAAGAAACGCGTAACTTTCAC-AAATAAACACGAAACTTTCGC
1 -AATAAACGCGAAACTTTCGCGATAT-AACGCGAAACTTTCGC
* * ** *
958456 GATATAACGCGTAACTTTCGCGATATAACGCCTAACTTTCGTG
1 AATA-AACGCGAAACTTTCGCGATATAACGCGAAACTTTCG-C
* * *
958499 AATAAACGCGAAACTTTCGCAATATAACGCGTAAGTTTCGC
1 AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
* * * *
958540 GAATAAACACGAAACTTTTGCGGTTTAACGCGAAACTTTCGC
1 -AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
** *
958582 AATTAAACGCGAAACTTTCATGATTTAACGCGAAACTT
1 AA-TAAACGCGAAACTTTCGCGATATAACGCGAAACTT
958620 AAATATATAT
Statistics
Matches: 290, Mismatches: 74, Indels: 25
0.75 0.19 0.06
Matches are distributed among these distances:
41 13 0.04
42 233 0.80
43 9 0.03
45 32 0.11
46 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (41 bp):
AATAAACGCGAAACTTTCGCGATATAACGCGAAACTTTCGC
Found at i:959623 original size:106 final size:105
Alignment explanation
Indices: 959436--959682 Score: 295
Period size: 106 Copynumber: 2.3 Consensus size: 105
959426 TTTATATAAT
* * * *
959436 AGTTTCGCATTAATTGGCGAAAGTTACACATTTATTCGCGAAAGTTACGCGTTTAATTGCAAAAC
1 AGTTTCGCGTTAATTCGCGAAAGTTACGCGTTTATTCGCGAAAGTTACGCGTTTAATTGCAAAAC
*
959501 TAACGCATTTATTCGCGAAAGTTACGCG-TTATATCGCGAA
66 TAACGAATTTATTCGCGAAAGTTACGCGTTTAT-TCGCGAA
* * *
959541 AGTTTCGCGTTAATTTGCGAAAGTTACGCGTTTATATCGCGAAAGTTACTCGTTTATTTGCAAAA
1 AGTTTCGCGTTAATTCGCGAAAGTTACGCGTTTAT-TCGCGAAAGTTACGCGTTTAATTGCAAAA
* * * *
959606 GTTACGAA-TTATATCGCGAAAGTTTCGCGTTTATTTGCGAA
65 CTAACGAATTTAT-TCGCGAAAGTTACGCGTTTATTCGCGAA
* *
959647 ACTTACGCGTT-ATATCGCGAAAGCTT-CGCGTTTATT
1 AGTTTCGCGTTAAT-TCGCGAAAG-TTACGCGTTTATT
959683 TGCAAAACTA
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
105 38 0.31
106 79 0.64
107 6 0.05
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (105 bp):
AGTTTCGCGTTAATTCGCGAAAGTTACGCGTTTATTCGCGAAAGTTACGCGTTTAATTGCAAAAC
TAACGAATTTATTCGCGAAAGTTACGCGTTTATTCGCGAA
Found at i:959665 original size:42 final size:42
Alignment explanation
Indices: 959452--959724 Score: 287
Period size: 42 Copynumber: 6.5 Consensus size: 42
959442 GCATTAATTG
* * * * *
959452 GCGAAAGTTACACATTTATTCGCGAAAGTTACGCGTT-TAATT
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTAT-ATC
* * ** * *
959494 GCAAAACTAACGCATTTATTCGCGAAAGTTACGCGTTATATC
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTATATC
*
959536 GCGAAAGTTTCGCGTTAATTTGCGAAAGTTACGCGTTTATATC
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCG-TTATATC
* * * **
959579 GCGAAAGTTACTCGTTTATTTGCAAAAGTTACGAATTATATC
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTATATC
*
959621 GCGAAAGTTTCGCGTTTATTTGCGAAACTTACGCGTTATATC
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTATATC
* * * * * * *
959663 GCGAAAGCTTCGCGTTTATTTGCAAAACTAATGCATTGTATC
1 GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTATATC
*
959705 GCGAAAGTTTCGTGTTTATT
1 GCGAAAGTTTCGCGTTTATT
959725 CGCTAAAAAA
Statistics
Matches: 197, Mismatches: 32, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
42 160 0.81
43 37 0.19
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (42 bp):
GCGAAAGTTTCGCGTTTATTTGCGAAAGTTACGCGTTATATC
Found at i:959676 original size:21 final size:21
Alignment explanation
Indices: 959452--959678 Score: 180
Period size: 21 Copynumber: 10.8 Consensus size: 21
959442 GCATTAATTG
* *
959452 GCGAAAGTTACACATT-TATTC
1 GCGAAAGTTACGCGTTATA-TC
*
959473 GCGAAAGTTACGCGTT-TAATT
1 GCGAAAGTTACGCGTTAT-ATC
* * * *
959494 GCAAAACTAACGCATT-TATTC
1 GCGAAAGTTACGCGTTATA-TC
959515 GCGAAAGTTACGCGTTATATC
1 GCGAAAGTTACGCGTTATATC
* *
959536 GCGAAAGTTTCGCGTTA-ATTT
1 GCGAAAGTTACGCGTTATA-TC
959557 GCGAAAGTTACGCGTTTATATC
1 GCGAAAGTTACGCG-TTATATC
* *
959579 GCGAAAGTTACTCGTT-TATTT
1 GCGAAAGTTACGCGTTATA-TC
* **
959600 GCAAAAGTTACGAATTATATC
1 GCGAAAGTTACGCGTTATATC
* *
959621 GCGAAAGTTTCGCGTT-TATTT
1 GCGAAAGTTACGCGTTATA-TC
*
959642 GCGAAACTTACGCGTTATATC
1 GCGAAAGTTACGCGTTATATC
959663 GCGAAAGCTT-CGCGTT
1 GCGAAAG-TTACGCGTT
959679 TATTTGCAAA
Statistics
Matches: 163, Mismatches: 32, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
20 6 0.04
21 130 0.80
22 26 0.16
23 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (21 bp):
GCGAAAGTTACGCGTTATATC
Found at i:960197 original size:24 final size:23
Alignment explanation
Indices: 960145--960190 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
960135 AATTCAACAC
* *
960145 AATTTTACGTTGAATCAGCGTTG
1 AATTTTACGTTGAAACAACGTTG
960168 AATTTTAGCGTTGAAACAACGTT
1 AATTTTA-CGTTGAAACAACGTT
960191 ACATTTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (23 bp):
AATTTTACGTTGAAACAACGTTG
Found at i:962597 original size:16 final size:16
Alignment explanation
Indices: 962576--962611 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
962566 AGCGTTAGGT
* *
962576 TTAGGGTTAGTGTTAG
1 TTAGGGTAAGAGTTAG
962592 TTAGGGTAAGAGTTAG
1 TTAGGGTAAGAGTTAG
962608 TTAG
1 TTAG
962612 CATTAGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TTAGGGTAAGAGTTAG
Found at i:966155 original size:161 final size:161
Alignment explanation
Indices: 965919--966349 Score: 596
Period size: 161 Copynumber: 2.7 Consensus size: 161
965909 ACTGCATTTG
* * * * * * *
965919 GAATTTTTCTAAGTCCAAGGGGCAATAACTCTGTCGGAAATTGCTCTATCATATCCAAAATCAAA
1 GAATTTTTCTAAGTCCAA-GGGCCATAACTCTGTCGAAAATTGCTCGATCGTACCCAATATAAAA
* * * *
965984 CTTGACCTAGATATTATTTA-AATAAACCTGCATACCAAATTTCATATCAATATGTGCACCCTCT
65 CTTGACCTAGATATTA-TCACGATAAACCTGTATACCAAATTTCATATCAATATGTGCACCCTAT
*
966048 GTGAAGAAAATGAGCGGAAACTGCAAATAACTC
129 GCGAAGAAAATGAGCGGAAACTGCAAATAACTC
**
966081 GAATTTTTCTAAGTGTAAGGGCCATAACTCTGTCGAAAATTGCTCGATCGTACCCAATATAAAAC
1 GAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATTGCTCGATCGTACCCAATATAAAAC
* * * * ** *
966146 TTGACCTAGATATTATCATGATAAACCTGTGTACTAAATTTCATTTCAATATGTTTATCCTATGC
66 TTGACCTAGATATTATCACGATAAACCTGTATACCAAATTTCATATCAATATGTGCACCCTATGC
966211 GAAGAAAATGAGCGGAAACTGCAAATAACTC
131 GAAGAAAATGAGCGGAAACTGCAAATAACTC
* * *
966242 GAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATTGCTCGATTGAACCCAATATCGAAA
1 GAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATTGCTCGATCGTACCCAATAT-AAAA
*
966307 -TTGACCTAGATATTATCACGATAAACCTATATACCAAATTTCA
65 CTTGACCTAGATATTATCACGATAAACCTGTATACCAAATTTCA
966350 ATATGTTTAT
Statistics
Matches: 238, Mismatches: 29, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
160 2 0.01
161 217 0.91
162 19 0.08
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (161 bp):
GAATTTTTCTAAGTCCAAGGGCCATAACTCTGTCGAAAATTGCTCGATCGTACCCAATATAAAAC
TTGACCTAGATATTATCACGATAAACCTGTATACCAAATTTCATATCAATATGTGCACCCTATGC
GAAGAAAATGAGCGGAAACTGCAAATAACTC
Found at i:968817 original size:30 final size:30
Alignment explanation
Indices: 968781--968839 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
968771 CATTTCCCGC
968781 TCCAGTCGTTCCCTCTCCCGCCTCTCCTGA
1 TCCAGTCGTTCCCTCTCCCGCCTCTCCTGA
* *
968811 TCCAGTCTTTCTCTCTCCCGCCTCTCCTG
1 TCCAGTCGTTCCCTCTCCCGCCTCTCCTG
968840 TTCCTTACGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.05, C:0.49, G:0.12, T:0.34
Consensus pattern (30 bp):
TCCAGTCGTTCCCTCTCCCGCCTCTCCTGA
Found at i:970697 original size:42 final size:43
Alignment explanation
Indices: 970634--970842 Score: 241
Period size: 42 Copynumber: 5.0 Consensus size: 43
970624 ACCAGCCTTG
*
970634 TCAG-TGCTTTTGCTCTTAAGGGAGATAATCTTAGATCCTTTC
1 TCAGTTGCTTTTGCTCTTAAGGGAGATAATCTTGGATCCTTTC
* *
970676 TC-GTTGCTTTTGCTCTTAAGGGAGATAATCTTAGATCCTTTT
1 TCAGTTGCTTTTGCTCTTAAGGGAGATAATCTTGGATCCTTTC
* * *
970718 TC-GTTGCTTTTGCTCTTAAGGGAAATAATCTTGGATCCTCTG
1 TCAGTTGCTTTTGCTCTTAAGGGAGATAATCTTGGATCCTTTC
* * * **
970760 TCATTTG-TTGTGCTTTTCGGGGAGATAATCTTGGATCCTTTC
1 TCAGTTGCTTTTGCTCTTAAGGGAGATAATCTTGGATCCTTTC
* * *
970802 TCATTTG-TTTTGCT-TCTCAGGGAGATAATTTTGGATCCTTT
1 TCAGTTGCTTTTGCTCT-TAAGGGAGATAATCTTGGATCCTTT
970843 GACCTCCTTT
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.01
42 143 0.97
43 3 0.02
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (43 bp):
TCAGTTGCTTTTGCTCTTAAGGGAGATAATCTTGGATCCTTTC
Found at i:972607 original size:15 final size:15
Alignment explanation
Indices: 972584--972618 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
972574 TTCTGCATAA
*
972584 GGCCAATTGATAAGT
1 GGCCGATTGATAAGT
972599 GGCCGATTGATAAGT
1 GGCCGATTGATAAGT
972614 GGCCG
1 GGCCG
972619 GATTACGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.17, G:0.34, T:0.23
Consensus pattern (15 bp):
GGCCGATTGATAAGT
Found at i:973035 original size:41 final size:41
Alignment explanation
Indices: 972816--973023 Score: 353
Period size: 41 Copynumber: 5.1 Consensus size: 41
972806 AGTTTTACTG
* **
972816 TACCACCTACAACAAGACAGATTGGCCATAATCTTAGCAAA
1 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
972857 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
1 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
972898 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
1 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
*
972939 TACCACCTACAACAAGAAAGATTGGTCATAATCTTAGCAGC
1 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
* * *
972980 TACCACCTACAACAAGAAAGACTGGTCATAATCATAGCAGC
1 TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
973021 TAC
1 TAC
973024 AGTCTACAAC
Statistics
Matches: 161, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 161 1.00
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (41 bp):
TACCACCTACAACAAGACAGATTGGTCATAATCTTAGCAGC
Found at i:975461 original size:39 final size:39
Alignment explanation
Indices: 975364--975502 Score: 224
Period size: 39 Copynumber: 3.5 Consensus size: 39
975354 GTTGGAAGGG
* *
975364 ATTGCCTTTGTCTCTCTATATCAGCACTGGTTAGCAAGGA
1 ATTGCCTTTATCTATCTATATCAGCACTGGTTAGCAA-GA
* *
975404 TTATGCCTTTATATATCTATATCAGCACTGGTTAGCAAGA
1 AT-TGCCTTTATCTATCTATATCAGCACTGGTTAGCAAGA
975444 ATTGCCTTTATCTATCTATATCAGCACTGGTTAGCAAGA
1 ATTGCCTTTATCTATCTATATCAGCACTGGTTAGCAAGA
975483 ATTGCCTTTATCTATCTATA
1 ATTGCCTTTATCTATCTATA
975503 GCAAGGATTG
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 56 0.61
40 4 0.04
41 32 0.35
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (39 bp):
ATTGCCTTTATCTATCTATATCAGCACTGGTTAGCAAGA
Found at i:975504 original size:26 final size:26
Alignment explanation
Indices: 975475--975528 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
975465 CAGCACTGGT
*
975475 TAGCAAGAATTGCCTTTATCTATCTA
1 TAGCAAGAATTGCCTTTATATATCTA
*
975501 TAGCAAGGATTGCCTTTATATATCTA
1 TAGCAAGAATTGCCTTTATATATCTA
975527 TA
1 TA
975529 TCAGCACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (26 bp):
TAGCAAGAATTGCCTTTATATATCTA
Found at i:978082 original size:24 final size:24
Alignment explanation
Indices: 978055--978108 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
978045 GATCTTGATC
*
978055 CACTGCCACCACTAGATTTCTGCA
1 CACTGCCACCACTAGACTTCTGCA
* * * *
978079 CACTACCATCACTGGACTTCTGCC
1 CACTGCCACCACTAGACTTCTGCA
978103 CACTGC
1 CACTGC
978109 TACTGCATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.41, G:0.13, T:0.24
Consensus pattern (24 bp):
CACTGCCACCACTAGACTTCTGCA
Found at i:979752 original size:24 final size:24
Alignment explanation
Indices: 979720--979878 Score: 291
Period size: 24 Copynumber: 6.6 Consensus size: 24
979710 TCTCTGTATA
*
979720 AGTTCCTCTGTATAAATGTTCTAC
1 AGTTCCTCTGTATAAATGTTCTTC
*
979744 AGTTCCTCTGTATAAATGTTCTAC
1 AGTTCCTCTGTATAAATGTTCTTC
979768 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979792 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
*
979816 AGTTCATCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979840 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979864 AGTTCCTCTGTATAA
1 AGTTCCTCTGTATAA
979879 GTTTCTCTGT
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 132 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (24 bp):
AGTTCCTCTGTATAAATGTTCTTC
Found at i:979795 original size:48 final size:48
Alignment explanation
Indices: 979720--980044 Score: 469
Period size: 48 Copynumber: 7.0 Consensus size: 48
979710 TCTCTGTATA
* *
979720 AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTAC
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
979768 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
*
979816 AGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
979864 AGTTCCTCTGTAT-AA-G----T---TT-CTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
979902 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
* *
979950 AGTTCCTCTGTATAAATGTTCTTCAGTTTACCT-TCT-TAGATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTCAG-TT-CCTCTGTATAAATGTTCTTC
* *
979998 AGTTCCT-TGGTATAAATGTTCTTCAGTTCATCTGTATAAACGTTCTT
1 AGTTCCTCT-GTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTT
980045 AGTGTTGCAC
Statistics
Matches: 252, Mismatches: 10, Indels: 30
0.86 0.03 0.10
Matches are distributed among these distances:
38 32 0.13
39 4 0.02
40 1 0.00
42 1 0.00
44 1 0.00
46 3 0.01
47 9 0.04
48 194 0.77
49 4 0.02
50 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (48 bp):
AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTC
Found at i:979837 original size:72 final size:72
Alignment explanation
Indices: 979720--980044 Score: 469
Period size: 72 Copynumber: 4.7 Consensus size: 72
979710 TCTCTGTATA
* * *
979720 AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
979785 GTTCTTC
66 GTTCTTC
979792 AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
979857 GTTCTTC
66 GTTCTTC
979864 AGTTCCTCTGTAT-AA-G----T---TTC-TCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
979919 GTTCTTC
66 GTTCTTC
* * *
979926 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTTACCT-TCT-TAG
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAG-TT-CCTCTGTATAA
979989 ATGTTCTTC
64 ATGTTCTTC
*
979998 AGTTCCT-TGGTATAAATGTTCTTCAGTTCATCTGTATAAACGTTCTT
1 AGTTCCTCT-GTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTT
980045 AGTGTTGCAC
Statistics
Matches: 233, Mismatches: 7, Indels: 26
0.88 0.03 0.10
Matches are distributed among these distances:
62 55 0.24
63 5 0.02
64 1 0.00
66 1 0.00
68 1 0.00
70 1 0.00
71 6 0.03
72 156 0.67
73 4 0.02
74 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (72 bp):
AGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
GTTCTTC
Found at i:979887 original size:110 final size:110
Alignment explanation
Indices: 979768--979977 Score: 402
Period size: 110 Copynumber: 1.9 Consensus size: 110
979758 AATGTTCTAC
979768 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAAT
979833 GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATA
66 GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATA
* *
979878 AGTTTCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAAT
979943 GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTT
66 GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTT
979978 TACCTTCTTA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 98 1.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (110 bp):
AGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCATCTGTATAAAT
GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATA
Found at i:979905 original size:24 final size:24
Alignment explanation
Indices: 979878--980044 Score: 241
Period size: 24 Copynumber: 7.0 Consensus size: 24
979868 CCTCTGTATA
*
979878 AGTTTCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979902 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979926 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
979950 AGTTCCTCTGTATAAATGTTCTTC
1 AGTTCCTCTGTATAAATGTTCTTC
* *
979974 AGTTTACCT-TCT-TAGATGTTCTTC
1 AG-TT-CCTCTGTATAAATGTTCTTC
979998 AGTTCCT-TGGTATAAATGTTCTTC
1 AGTTCCTCT-GTATAAATGTTCTTC
* *
980022 AGTTCATCTGTATAAACGTTCTT
1 AGTTCCTCTGTATAAATGTTCTT
980045 AGTGTTGCAC
Statistics
Matches: 131, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
22 4 0.03
23 3 0.02
24 116 0.89
25 5 0.04
26 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (24 bp):
AGTTCCTCTGTATAAATGTTCTTC
Found at i:979937 original size:158 final size:158
Alignment explanation
Indices: 979674--980036 Score: 568
Period size: 158 Copynumber: 2.3 Consensus size: 158
979664 TCAGTAAAAG
* ** * * *
979674 TGTTCTTCAGTTCCTCGGCCTATATCTTCTTCAGTTTCTCTGTATAAGTTCCTCTGTATAAATGT
1 TGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAGTTCCTCTGTATAAATGT
979739 TCTACAGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTA
66 TCTACAGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTA
*
979804 TAAATGTTCTTCAGTTCATCTGT-ATAAA
131 TAAATGTTCTTCAGTTCACCT-TCATAAA
*
979832 TGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAGTTTCTCTGTATAAATGT
1 TGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAGTTCCTCTGTATAAATGT
* *
979897 TCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTA
66 TCTACAGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTA
* * *
979962 TAAATGTTCTTCAGTTTACCTTCTTAGA
131 TAAATGTTCTTCAGTTCACCTTCATAAA
*
979990 TGTTCTTCAGTTCCT-TGGTATAAATGTTCTTCAGTTCATCTGTATAA
1 TGTTCTTCAGTTCCTCT-GTATAAATGTTCTTCAGTTCCTCTGTATAA
980037 ACGTTCTTAG
Statistics
Matches: 189, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
157 2 0.01
158 187 0.99
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (158 bp):
TGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAGTTCCTCTGTATAAATGT
TCTACAGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTA
TAAATGTTCTTCAGTTCACCTTCATAAA
Found at i:979986 original size:86 final size:86
Alignment explanation
Indices: 979810--979976 Score: 271
Period size: 86 Copynumber: 1.9 Consensus size: 86
979800 TGTATAAATG
979810 TTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGT
1 TTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGT
* * **
979875 ATAAGTTTCTCTGTATAAATG
66 ATAAATTTCTCAGTATAAACC
*
979896 TTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGT
1 TTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGT
979961 ATAAATGTTCTTCAGT
66 ATAAAT-TTC-TCAGT
979977 TTACCTTCTT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 69 0.91
87 3 0.04
88 4 0.05
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (86 bp):
TTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGT
ATAAATTTCTCAGTATAAACC
Found at i:979993 original size:134 final size:134
Alignment explanation
Indices: 979744--980012 Score: 445
Period size: 134 Copynumber: 2.0 Consensus size: 134
979734 AATGTTCTAC
979744 AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
*
979809 GTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCT-
66 GTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTCTATAAATGTTCTTCAGTTCCT-TG
979873 GTATA
130 GTATA
* *
979878 AGTTTCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
1 AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
* *
979943 GTTCTTCAGTTCCTCTGTATAAATGTTCTTCAGTTTACCT-TCT-TAGATGTTCTTCAGTTCCTT
66 GTTCTTCAGTTCATCTGTATAAATGTTCTTCAG-TT-CCTCTCTATAAATGTTCTTCAGTTCCTT
980006 GGTATA
129 GGTATA
980012 A
1 A
980013 ATGTTCTTCA
Statistics
Matches: 127, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
133 1 0.01
134 119 0.94
135 4 0.03
136 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (134 bp):
AGTTCCTCTGTATAAATGTTCTACAGTTCCTCTGTATAAATGTTCTTCAGTTCCTCTGTATAAAT
GTTCTTCAGTTCATCTGTATAAATGTTCTTCAGTTCCTCTCTATAAATGTTCTTCAGTTCCTTGG
TATA
Found at i:985421 original size:18 final size:19
Alignment explanation
Indices: 985398--985439 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
985388 CACCATCACC
**
985398 ACAAAACAATGCATGC-AA
1 ACAAAACAACCCATGCAAA
985416 ACAAAACAACCCATGCAAA
1 ACAAAACAACCCATGCAAA
985435 ACAAA
1 ACAAA
985440 CAAACTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.60, C:0.26, G:0.07, T:0.07
Consensus pattern (19 bp):
ACAAAACAACCCATGCAAA
Found at i:987087 original size:30 final size:30
Alignment explanation
Indices: 987051--987122 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
987041 ACCTTTAGGC
* *
987051 TTACCTGAGCTGTGTCAATCACCCGTGTCT
1 TTACCTGAGCTGTGACAATCACCCGAGTCT
*
987081 TTACCTGAGCTGTGACAATCACCTGAGTCT
1 TTACCTGAGCTGTGACAATCACCCGAGTCT
987111 TTACCTGAGCTG
1 TTACCTGAGCTG
987123 AGATCTTACC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (30 bp):
TTACCTGAGCTGTGACAATCACCCGAGTCT
Found at i:991570 original size:2 final size:2
Alignment explanation
Indices: 991563--991596 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
991553 CAATGTTCAC
991563 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
991597 TAATGCATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:994093 original size:16 final size:16
Alignment explanation
Indices: 994072--994111 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
994062 CGCCCTAGTC
* * *
994072 CGTTCGCTCTAATTAT
1 CGTTCGCCCAAATAAT
994088 CGTTCGCCCAAATAAT
1 CGTTCGCCCAAATAAT
994104 CGTTCGCC
1 CGTTCGCC
994112 TTAAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (16 bp):
CGTTCGCCCAAATAAT
Found at i:994923 original size:18 final size:18
Alignment explanation
Indices: 994900--994941 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
994890 GCTATTTTGA
994900 ATAGCTTTATAAAGCTAT
1 ATAGCTTTATAAAGCTAT
* *
994918 ATAGCTTTTTCAAGCTAT
1 ATAGCTTTATAAAGCTAT
994936 ATAGCT
1 ATAGCT
994942 AAATCAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (18 bp):
ATAGCTTTATAAAGCTAT
Found at i:994948 original size:18 final size:18
Alignment explanation
Indices: 994911--994949 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
994901 TAGCTTTATA
***
994911 AAGCTATATAGCTTTTTC
1 AAGCTATATAGCTAAATC
994929 AAGCTATATAGCTAAATC
1 AAGCTATATAGCTAAATC
994947 AAG
1 AAG
994950 AGATTGTACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
AAGCTATATAGCTAAATC
Found at i:996831 original size:19 final size:19
Alignment explanation
Indices: 996807--996864 Score: 107
Period size: 19 Copynumber: 3.1 Consensus size: 19
996797 TGTAAATTTT
*
996807 AAATAATTGATTAGTCTGC
1 AAATAATTGATAAGTCTGC
996826 AAATAATTGATAAGTCTGC
1 AAATAATTGATAAGTCTGC
996845 AAATAATTGATAAGTCTGC
1 AAATAATTGATAAGTCTGC
996864 A
1 A
996865 GTCTAATTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (19 bp):
AAATAATTGATAAGTCTGC
Found at i:997536 original size:8 final size:8
Alignment explanation
Indices: 997523--997567 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
997513 TGGTTTCACC
997523 CTGTCCGT
1 CTGTCCGT
997531 CTGTCCGT
1 CTGTCCGT
*
997539 CTGTCTGT
1 CTGTCCGT
997547 CTGTCCGT
1 CTGTCCGT
*
997555 CTGTCCAT
1 CTGTCCGT
997563 CTGTC
1 CTGTC
997568 TGTAGACGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.02, C:0.36, G:0.22, T:0.40
Consensus pattern (8 bp):
CTGTCCGT
Found at i:997546 original size:4 final size:4
Alignment explanation
Indices: 997523--997570 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
997513 TGGTTTCACC
* * * **
997523 CTGT CCGT CTGT CCGT CTGT CTGT CTGT CCGT CTGT CCAT CTGT CTGT
1 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT
997571 AGACGCAACT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.02, C:0.33, G:0.23, T:0.42
Consensus pattern (4 bp):
CTGT
Found at i:998138 original size:36 final size:36
Alignment explanation
Indices: 998091--998270 Score: 168
Period size: 36 Copynumber: 4.9 Consensus size: 36
998081 GAACAGATGG
* *
998091 AAAGTAGTAATCTTATAGAAAGTCCTGCAGGTAACT
1 AAAGTAGTAATCTTATAGAAAGTCCTACAGGTAAAT
* *
998127 AAAGTAGTAATCTTTTA-AAA-TTCTACAGGTAAAT
1 AAAGTAGTAATCTTATAGAAAGTCCTACAGGTAAAT
* * *
998161 AAAGTAATAATCCTAAAGAAAGTCCTA-AGGTAAAT
1 AAAGTAGTAATCTTATAGAAAGTCCTACAGGTAAAT
* *
998196 AAAGTAGTAATCCTTAGTCCTAAAGAAAGTCCTACAGGTGATT
1 AAAGTAGTAAT-CTTA----T--AGAAAGTCCTACAGGTAAAT
* * *
998239 AAAGTAGCAATCCTGTAGAAAGTCCTACAGGT
1 AAAGTAGTAATCTTATAGAAAGTCCTACAGGT
998271 GAATTAAGAG
Statistics
Matches: 117, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
34 24 0.21
35 24 0.21
36 39 0.33
38 1 0.01
42 13 0.11
43 16 0.14
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (36 bp):
AAAGTAGTAATCTTATAGAAAGTCCTACAGGTAAAT
Found at i:998218 original size:42 final size:43
Alignment explanation
Indices: 998171--998252 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
998161 AAAGTAATAA
*
998171 TCCTAAAGAAAGTCCTA-AGGTAAATAAAGTAGTAATCCTTAG
1 TCCTAAAGAAAGTCCTACAGGTAAATAAAGTAGCAATCCTTAG
* *
998213 TCCTAAAGAAAGTCCTACAGGTGATTAAAGTAGCAATCCT
1 TCCTAAAGAAAGTCCTACAGGTAAATAAAGTAGCAATCCT
998253 GTAGAAAGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 17 0.47
43 19 0.53
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (43 bp):
TCCTAAAGAAAGTCCTACAGGTAAATAAAGTAGCAATCCTTAG
Found at i:999428 original size:24 final size:24
Alignment explanation
Indices: 999370--999438 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
999360 CACAACCAGG
* *
999370 GCACCTGCTGTCACTGACCAGAGA
1 GCACCTGCTGTCACTGACAAGACA
* * *
999394 GCTCCTACTGTCACTGAGAAGACA
1 GCACCTGCTGTCACTGACAAGACA
*
999418 GCACCTGCTGTCAATGACAAG
1 GCACCTGCTGTCACTGACAAG
999439 GTCAAGTCAG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (24 bp):
GCACCTGCTGTCACTGACAAGACA
Found at i:1008621 original size:20 final size:19
Alignment explanation
Indices: 1008556--1008629 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 19
1008546 TTATATTTTC
*
1008556 TGATATCAAAAAATAAATATT
1 TGATATCAAAAACT-AAT-TT
* *
1008577 TGATATCAATAATTCGAATTAT
1 TGATATCAA-AA-ACTAATT-T
1008599 TGATATCAAAAACTAATTCT
1 TGATATCAAAAACTAATT-T
1008619 TGATAT-AAAAA
1 TGATATCAAAAA
1008630 ATTCTTTATA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 5 0.11
20 12 0.27
21 12 0.27
22 15 0.34
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (19 bp):
TGATATCAAAAACTAATTT
Found at i:1008630 original size:20 final size:20
Alignment explanation
Indices: 1008593--1008630 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1008583 CAATAATTCG
*
1008593 AATTATTGATATCAAAAACT
1 AATTATTGATATAAAAAACT
*
1008613 AATTCTTGATATAAAAAA
1 AATTATTGATATAAAAAA
1008631 TTCTTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AATTATTGATATAAAAAACT
Found at i:1008634 original size:16 final size:16
Alignment explanation
Indices: 1008613--1008663 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
1008603 ATCAAAAACT
*
1008613 AATTCTTGATATAAAA
1 AATTCTTTATATAAAA
*
1008629 AATTCTTTATAT-TAA
1 AATTCTTTATATAAAA
1008644 AATTCTTTATATCAAAA
1 AATTCTTTATAT-AAAA
1008661 AAT
1 AAT
1008664 CTATTTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 14 0.47
16 11 0.37
17 5 0.17
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (16 bp):
AATTCTTTATATAAAA
Found at i:1008647 original size:15 final size:15
Alignment explanation
Indices: 1008613--1008661 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
1008603 ATCAAAAACT
*
1008613 AATTCTTGATATAAAA
1 AATTCTTTATAT-AAA
*
1008629 AATTCTTTATATTAA
1 AATTCTTTATATAAA
1008644 AATTCTTTATATCAAA
1 AATTCTTTATAT-AAA
1008660 AA
1 AA
1008662 ATCTATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (15 bp):
AATTCTTTATATAAA
Found at i:1015630 original size:17 final size:17
Alignment explanation
Indices: 1015608--1015642 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1015598 CTCTGGTAAA
1015608 TATAAGTAATCATACTT
1 TATAAGTAATCATACTT
1015625 TATAAGTAATCATACTT
1 TATAAGTAATCATACTT
1015642 T
1 T
1015643 TCAATGGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (17 bp):
TATAAGTAATCATACTT
Found at i:1025813 original size:2 final size:2
Alignment explanation
Indices: 1025808--1025840 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1025798 TCAGAAATAT
1025808 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1025841 TTCTTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1035309 original size:2 final size:2
Alignment explanation
Indices: 1035302--1035349 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
1035292 CTAAGTAAAA
* *
1035302 CT CT CT CT CT TT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1035344 CT CT CT
1 CT CT CT
1035350 TTGCGTGAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1036975 original size:2 final size:2
Alignment explanation
Indices: 1036968--1036994 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1036958 TAGCTTTTTA
1036968 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1036995 TGCTCTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1039519 original size:33 final size:33
Alignment explanation
Indices: 1039474--1041526 Score: 2245
Period size: 33 Copynumber: 61.5 Consensus size: 33
1039464 GTATGACAGA
1039474 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1039507 ACACTCTATGTGTTCTGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1039540 ACACTCTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * **
1039573 ACATTCTATGTGTTCTGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1039606 ACACTCTCTGTGTTCTGTCAGGTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * *
1039639 ACAATATCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1039672 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * ** * *
1039705 ACACTCTCTGTGTTTTGTTAGCTATCCATTAAT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * **
1039738 ACACTCTCTGTGTTCTGCCAACTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1039771 ACAATTATCTCTGTGTTCTGTCAGCCATCCATCAGT-AGT
1 AC-A--CTCTCTGTGTTCTGTCAG-C-T--ATCTGTCAGT
1039810 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1039843 ACACTCTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1039876 ACACTGTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * * **
1039909 TCACCCTCTGTGTTCTGCCAACTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * *
1039942 ACAATCTCTGTGTTCCGTCAGCCATCCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1039975 ACACTCTCTGTGTTCTGTCAGTTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * *
1040008 AAACTCTATGTGTTCTGTCAGCTAT-TCGTCAAT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
* *
1040041 ACACTCTCTGTGTTCTTTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * **
1040074 ACACTCTTTGTGTTCTGCCAACTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040107 AC-CATCTCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACAC-TCTCTGTGTTCTGTCAGCTATCTGTCAGT
1040140 -CAACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 AC-ACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1040173 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * *
1040206 AAACTCTATGTGTTCTGTCAGCTAT-TCGTCAAT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
* *
1040239 ACACTCTCTGTGTTCTTTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * **
1040272 ACACTCTTTGTGTTCTGCCAACTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040305 AC-CATCTCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACAC-TCTCTGTGTTCTGTCAGCTATCTGTCAGT
1040338 -CAACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 AC-ACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040371 ACACTCTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * *
1040404 ACACTCTATGTGTTTTGTTAGCTAT-TCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
**
1040437 ACACTCTCTGTGTTCTGTCAGCTATCCCTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * *
1040470 ACACTCTTTGTGTTCTGTCAACTATCCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040503 ACACTCTCTGTGTTCTGTCAGCCATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040536 ACACTCTCTGTGTTCTGTCAACTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040569 ACACTCTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040602 ACACTCTCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1040635 ACACTCTCTGCGTTCTGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1040668 ACTCTCTCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1040701 ACACTCTCTGCGTTCTGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1040734 ACTCTCTCTGTGTTCTGTCAGCTATCAGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1040767 ACACTCTCTGTGTTCCGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
**
1040800 ACACTCTCTGTGTTCTGTCAGCTATCCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* **
1040833 ACAATCTCTGTGTTCTGTCAGCTA-CCATCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1040865 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
*
1040898 ACACTCTATGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1040931 ACACTCTCTGTGTTTTGTTAGCTAT-TCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
* * *
1040964 ACACTGTCTGTGTTTTGTCAGCTATCCGTCAGACATGT
1 ACACTCTCTGTGTTCTGTCAGCTAT-C-T--GTCA-GT
* *
1041002 ACACTCTCTGTGTTTTGTTAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * * *
1041035 ACATTTTCCGTGTTCTGTCAGCTATCTGGC-TT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * * *
1041067 AAAACTCTCTGTTTTCTGCCAACTAT-TCATCAGT
1 -ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
1041101 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1041134 ACACTCTCTGTGTTTTGTTAGCTAT-TCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
* *
1041167 ACACTGTCTGTGTTTTGTCAGCTATCCGTCAGTACATGT
1 ACACTCTCTGTGTTCTGTCAGCTAT-C-T--GT-CA-GT
* *
1041206 ACACTCTCTGTGTTTTGTCAGCTATCCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * * *
1041239 ACATTTTCCGTGTTCTGTCAGCTATCTGGC-TT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* * * * *
1041271 AAAACTCTCTGTTTTCTGCCAACTAT-TCATCAGT
1 -ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
* * *
1041305 ACACTCTATGTGTTTTGTTAGCTAT-TCGTCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCT-GTCAGT
*
1041338 ACACTCTCTGTGTTCTGTCAGCTATCCT-TCACT
1 ACACTCTCTGTGTTCTGTCAGCTAT-CTGTCAGT
* * * * * *
1041371 AGACTCTTTTTGTTCTGTCAACTATTTGCCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
**
1041404 ACACACTATGTGNTCTCTGTGTTCTGTCAGCTA-CCATCAGT
1 --ACAC-------TCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1041445 ACACTCTCCGTGTTCTGTCAGCTATCCT-TCACT
1 ACACTCTCTGTGTTCTGTCAGCTAT-CTGTCAGT
* * * * * *
1041478 AGACTCTTTTTGTTCTGTCAACTATTTGCCAGT
1 ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
* *
1041511 ACACACTATGTGTTCT
1 ACACTCTCTGTGTTCT
1041527 CCAATCCATT
Statistics
Matches: 1716, Mismatches: 246, Indels: 116
0.83 0.12 0.06
Matches are distributed among these distances:
32 70 0.04
33 1492 0.87
34 15 0.01
35 7 0.00
36 35 0.02
37 7 0.00
38 30 0.02
39 35 0.02
40 4 0.00
41 4 0.00
42 17 0.01
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (33 bp):
ACACTCTCTGTGTTCTGTCAGCTATCTGTCAGT
Done.