oyster.v9_M.fa.s49.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1188
Parameters: 2 7 7 80 10 50 500
Length:  1075576

Tables:   1   2   3   

This is table  3  of  3  ( 317 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737388--737695	54	5.4	62	78	16	351	15	17	38	27	1.90
737450--737500	16	3.2	16	66	5	50	15	17	39	27	1.90
737512--737579	23	3.0	23	97	0	127	8	16	44	30	1.78
737195--737695	255	2.0	255	95	0	905	14	17	39	27	1.90
739662--740658	434	2.3	434	86	3	1357	38	15	17	29	1.90
746882--746915	12	2.8	12	90	0	50	0	41	23	35	1.55
747451--747849	169	2.4	164	86	5	518	34	17	18	30	1.94
747459--747849	164	2.3	165	85	6	513	34	17	18	29	1.94
753797--754124	161	2.0	161	84	2	426	30	15	18	34	1.93
776741--776811	31	2.2	32	90	2	108	22	14	30	32	1.93
776741--776829	31	2.9	31	81	6	101	25	14	28	31	1.95
777870--778282	207	2.0	206	100	0	817	29	16	20	33	1.95
787374--787421	16	3.0	16	96	0	87	35	25	39	0	1.56
787375--787430	20	2.8	20	91	0	85	33	25	39	1	1.66
787374--787429	16	3.5	16	95	0	85	33	25	39	1	1.66
787383--787430	4	12.0	4	86	0	60	31	25	41	2	1.67
793911--793958	16	3.0	16	96	0	87	35	25	39	0	1.56
793912--793967	20	2.8	20	91	0	85	33	25	39	1	1.66
793911--793966	16	3.5	16	95	0	85	33	25	39	1	1.66
793920--793967	4	12.0	4	86	0	60	31	25	41	2	1.67
801973--802236	124	2.1	124	95	2	469	36	17	14	31	1.90
805317--805342	10	2.6	10	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811138--811225	21	4.2	21	76	1	88	40	14	17	27	1.88
811295--811388	21	4.5	21	73	5	82	35	14	10	39	1.81
823257--823313	21	2.7	21	89	5	89	40	8	14	36	1.76
834971--835004	2	17.0	2	100	0	68	0	50	0	50	1.00
836857--836917	29	2.1	29	96	0	113	26	22	16	34	1.95
837249--837278	15	2.0	15	100	0	60	6	26	20	46	1.75
840037--840213	70	2.5	70	95	0	318	20	28	23	27	1.99
845748--845780	16	2.1	16	100	0	66	27	24	36	12	1.91
856226--856324	1	99.0	1	73	0	72	0	0	14	85	0.59
856217--856322	5	21.4	5	82	14	98	0	0	16	83	0.64
856232--856325	19	4.9	20	75	15	99	0	0	14	85	0.61
856227--856325	39	2.6	38	83	10	139	0	0	15	84	0.61
856217--856325	30	3.7	30	85	14	147	0	0	16	83	0.65
859416--859446	14	2.2	14	100	0	62	51	6	16	25	1.68
866573--866653	39	2.1	39	97	0	153	25	19	25	28	1.99
883443--883502	2	30.0	2	89	0	93	0	45	0	55	0.99
890850--890904	2	27.5	2	96	0	101	49	0	49	0	1.01
892528--892580	2	26.5	2	100	0	106	49	0	50	0	1.00
904075--904120	2	23.0	2	100	0	92	0	50	0	50	1.00
911195--911233	19	2.1	19	100	0	78	15	20	15	48	1.81
925353--925391	20	2.0	21	85	10	55	30	15	12	41	1.85
928436--928474	2	20.5	2	87	10	55	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948403--948429	2	13.5	2	100	0	54	48	0	0	51	1.00
948717--948808	21	4.4	21	76	5	87	21	16	18	43	1.88
948717--948808	42	2.2	42	84	0	121	21	16	18	43	1.88
948895--949022	21	6.1	21	72	8	91	38	18	13	29	1.89
948911--949025	41	2.8	42	85	6	162	39	18	13	28	1.89
949073--949139	21	3.2	21	80	0	89	28	13	14	43	1.84
949073--949167	42	2.3	43	87	3	140	28	15	14	41	1.87
949073--949150	21	3.7	21	77	0	84	26	14	15	43	1.85
949249--949342	21	4.5	21	86	5	127	39	19	14	26	1.90
949506--949554	22	2.2	23	85	3	64	18	18	6	57	1.61
949505--949555	23	2.2	24	79	10	61	17	17	5	58	1.57
953647--953686	2	20.0	2	100	0	80	50	0	50	0	1.00
957235--957293	21	2.8	21	78	0	64	23	15	16	44	1.86
958132--958175	2	22.0	2	100	0	88	0	50	0	50	1.00
958943--958967	12	2.1	12	100	0	50	24	8	0	68	1.16
961226--961250	13	1.9	13	100	0	50	40	36	16	8	1.77
961947--962612	326	2.0	326	97	0	1269	27	19	24	29	1.98
969868--969902	2	17.5	2	100	0	70	48	0	51	0	1.00
972453--972495	22	2.0	22	90	0	68	18	23	16	41	1.89
982579--982605	12	2.2	12	100	0	54	22	7	11	59	1.56
987425--987476	2	26.0	2	100	0	104	50	0	50	0	1.00
988435--988471	1	37.0	1	94	0	65	0	97	0	2	0.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988872--989611	168	4.4	169	87	3	1001	32	18	18	29	1.95
988875--989612	338	2.2	336	87	2	1043	32	18	18	29	1.95
1024901--1025013	20	5.6	20	72	15	65	57	9	6	26	1.54
1024966--1025024	21	2.9	19	80	11	64	59	5	6	28	1.45
1028124--1029827	36	47.1	36	85	5	2053	21	20	21	36	1.96
1030723--1030747	1	25.0	1	100	0	50	0	100	0	0	0.00
1049023--1049050	2	14.0	2	100	0	56	50	0	0	50	1.00
1067511--1067563	2	26.5	2	100	0	106	0	50	0	49	1.00
1067564--1067594	2	15.5	2	100	0	62	48	51	0	0	1.00
1070636--1070681	2	23.0	2	100	0	92	0	0	50	50	1.00
1074523--1074551	2	14.5	2	100	0	58	51	0	48	0	1.00

Tables:   1   2   3

The End!