Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold149
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1065560
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.30
Warning! 107426 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:729621 original size:16 final size:17
Alignment explanation
Indices: 729597--729629 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
729587 TAAAACAAGC
*
729597 TTTATAATTTG-TTTAA
1 TTTAGAATTTGCTTTAA
729613 TTTAGAATTTGCTTTAA
1 TTTAGAATTTGCTTTAA
729630 GAATATCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.58
Consensus pattern (17 bp):
TTTAGAATTTGCTTTAA
Found at i:730836 original size:24 final size:24
Alignment explanation
Indices: 730804--730924 Score: 134
Period size: 26 Copynumber: 4.9 Consensus size: 24
730794 AATCAATGGG
730804 GTACCACTCGATACGCCAGGCTAT
1 GTACCACTCGATACGCCAGGCTAT
*
730828 GTACCACTCGATATGCCAGGCTAT
1 GTACCACTCGATACGCCAGGCTAT
* *
730852 GTACCACTCGATACACCTGGGGCTAT
1 GTACCACTCGATACGCC--AGGCTAT
* * *
730878 GTACCACTTGATACACCTGGGGCTAT
1 GTACCACTCGATACGCC--AGGCTAT
* *
730904 GTACCCCTCCATACGCCAGGC
1 GTACCACTCGATACGCCAGGC
730925 AATGCTGAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
24 41 0.48
26 44 0.52
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (24 bp):
GTACCACTCGATACGCCAGGCTAT
Found at i:732889 original size:12 final size:11
Alignment explanation
Indices: 732872--733180 Score: 126
Period size: 12 Copynumber: 30.5 Consensus size: 11
732862 ACAACAGGTG
732872 GATGGAGAAACT
1 GATGGAG-AACT
732884 GAT-G-G-ACT
1 GATGGAGAACT
732892 GATGGAGAGACT
1 GATGGAGA-ACT
732904 GAT-G-G-ACT
1 GATGGAGAACT
*
732912 GATGGAGAGACA
1 GATGGAGA-ACT
732924 GAT-G-G-ACT
1 GATGGAGAACT
732932 GATGGAGAGACT
1 GATGGAGA-ACT
732944 GAT-G-G-ACT
1 GATGGAGAACT
732952 GATGGAGAGACT
1 GATGGAGA-ACT
*
732964 GATGGAGAGACA
1 GATGGAGA-ACT
732976 GATGG-G--CT
1 GATGGAGAACT
*
732984 AATGGAGAGACT
1 GATGGAGA-ACT
732996 GAT-G-G-ACT
1 GATGGAGAACT
*
733004 GATGGAGAGACA
1 GATGGAGA-ACT
733016 GAT-G-G-ACT
1 GATGGAGAACT
733024 GATGGAGAGACT
1 GATGGAGA-ACT
733036 GAT-G-G-ACT
1 GATGGAGAACT
733044 GATGGAGAGACT
1 GATGGAGA-ACT
733056 GAT-G-G-ACT
1 GATGGAGAACT
733064 GATGGAGAGACT
1 GATGGAGA-ACT
733076 GATGG-G--CT
1 GATGGAGAACT
*
733084 AATGGAGAGACT
1 GATGGAGA-ACT
733096 GAT-G-G-ACT
1 GATGGAGAACT
*
733104 GATGGAGAGACA
1 GATGGAGA-ACT
733116 GAT-G-G-ACT
1 GATGGAGAACT
733124 GATGGAGAGACT
1 GATGGAGA-ACT
733136 GAT-G-G-ACT
1 GATGGAGAACT
733144 GATGGAGAGACT
1 GATGGAGA-ACT
733156 GAT-G-G-ACT
1 GATGGAGAACT
733164 GATGGAGAGACT
1 GATGGAGA-ACT
733176 GATGG
1 GATGG
733181 NNNNNNNNNN
Statistics
Matches: 229, Mismatches: 12, Indels: 112
0.65 0.03 0.32
Matches are distributed among these distances:
8 80 0.35
9 14 0.06
10 24 0.10
11 14 0.06
12 97 0.42
ACGTcount: A:0.32, C:0.10, G:0.40, T:0.18
Consensus pattern (11 bp):
GATGGAGAACT
Found at i:732897 original size:20 final size:20
Alignment explanation
Indices: 732872--733180 Score: 490
Period size: 20 Copynumber: 15.8 Consensus size: 20
732862 ACAACAGGTG
*
732872 GATGGAGAAACTGATGGACT
1 GATGGAGAGACTGATGGACT
732892 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
*
732912 GATGGAGAGACAGATGGACT
1 GATGGAGAGACTGATGGACT
732932 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
732952 GATGGAGAGACTGATGGA--
1 GATGGAGAGACTGATGGACT
*
732970 GA--GACAGA-TG--GG-CT
1 GATGGAGAGACTGATGGACT
*
732984 AATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
*
733004 GATGGAGAGACAGATGGACT
1 GATGGAGAGACTGATGGACT
733024 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
733044 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
*
733064 GATGGAGAGACTGATGGGCT
1 GATGGAGAGACTGATGGACT
*
733084 AATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
*
733104 GATGGAGAGACAGATGGACT
1 GATGGAGAGACTGATGGACT
733124 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
733144 GATGGAGAGACTGATGGACT
1 GATGGAGAGACTGATGGACT
733164 GATGGAGAGACTGATGG
1 GATGGAGAGACTGATGG
733181 NNNNNNNNNN
Statistics
Matches: 266, Mismatches: 15, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
13 2 0.01
14 1 0.00
15 2 0.01
16 10 0.04
17 2 0.01
18 2 0.01
19 2 0.01
20 245 0.92
ACGTcount: A:0.32, C:0.10, G:0.40, T:0.18
Consensus pattern (20 bp):
GATGGAGAGACTGATGGACT
Found at i:735035 original size:27 final size:28
Alignment explanation
Indices: 735001--735100 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 28
734991 AACTGTAACG
735001 ACAACAAAA-TCATGTTAAAACTGTGCA
1 ACAACAAAAGTCATGTTAAAACTGTGCA
* * *
735028 ACAACAAAAGTCATCACATCAAAACTGT-AA
1 ACAACAAAAGTCAT---GTTAAAACTGTGCA
735058 TGACAACAAAA-TCATGTTAAAACTGTGCA
1 --ACAACAAAAGTCATGTTAAAACTGTGCA
735087 ACAACAAAAGTCAT
1 ACAACAAAAGTCAT
735101 CACATCAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
27 18 0.31
28 17 0.29
29 1 0.02
30 1 0.02
31 13 0.22
32 9 0.15
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (28 bp):
ACAACAAAAGTCATGTTAAAACTGTGCA
Found at i:735055 original size:31 final size:31
Alignment explanation
Indices: 735017--735114 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 31
735007 AAATCATGTT
735017 AAAACTGTGCAACAACAAAAGTCATCACATC
1 AAAACTGTGCAACAACAAAAGTCATCACATC
* * *
735048 AAAACTGT-AATGACAACAAAA-TCAT---GTT
1 AAAACTGTGCA--ACAACAAAAGTCATCACATC
735076 AAAACTGTGCAACAACAAAAGTCATCACATC
1 AAAACTGTGCAACAACAAAAGTCATCACATC
735107 AAAACTGT
1 AAAACTGT
735115 AATGACAACA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
27 9 0.17
28 13 0.24
29 1 0.02
30 1 0.02
31 21 0.39
32 9 0.17
ACGTcount: A:0.49, C:0.21, G:0.10, T:0.19
Consensus pattern (31 bp):
AAAACTGTGCAACAACAAAAGTCATCACATC
Found at i:735075 original size:59 final size:59
Alignment explanation
Indices: 734983--735125 Score: 277
Period size: 59 Copynumber: 2.4 Consensus size: 59
734973 TCCCATTCTC
*
734983 CACATCAAAACTGTAACGACAACAAAATCATGTTAAAACTGTGCAACAACAAAAGTCAT
1 CACATCAAAACTGTAATGACAACAAAATCATGTTAAAACTGTGCAACAACAAAAGTCAT
735042 CACATCAAAACTGTAATGACAACAAAATCATGTTAAAACTGTGCAACAACAAAAGTCAT
1 CACATCAAAACTGTAATGACAACAAAATCATGTTAAAACTGTGCAACAACAAAAGTCAT
735101 CACATCAAAACTGTAATGACAACAA
1 CACATCAAAACTGTAATGACAACAA
735126 TAAACCATAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 83 1.00
ACGTcount: A:0.50, C:0.22, G:0.10, T:0.19
Consensus pattern (59 bp):
CACATCAAAACTGTAATGACAACAAAATCATGTTAAAACTGTGCAACAACAAAAGTCAT
Found at i:740623 original size:18 final size:18
Alignment explanation
Indices: 740600--740637 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
740590 TAAAAACACT
740600 CGACACATTACTAGGACA
1 CGACACATTACTAGGACA
740618 CGACACATTACTAGGACA
1 CGACACATTACTAGGACA
740636 CG
1 CG
740638 TACCTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (18 bp):
CGACACATTACTAGGACA
Found at i:741814 original size:2 final size:2
Alignment explanation
Indices: 741807--741880 Score: 148
Period size: 2 Copynumber: 37.0 Consensus size: 2
741797 ACAAATGGCA
741807 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
741849 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
741881 ATGGTTTGAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:747415 original size:26 final size:26
Alignment explanation
Indices: 747392--747536 Score: 209
Period size: 26 Copynumber: 5.6 Consensus size: 26
747382 GCAGGAATCT
* ** *
747392 GTCAAAATTCCTGGCAGAGGGAATCG
1 GTCAGAATTCCTGGTTGAGGGAATTG
* *
747418 GTCAGAATTCCTGGTAGAGAGAATTG
1 GTCAGAATTCCTGGTTGAGGGAATTG
747444 GTCAGAATTCCTGGTTGAGGGAATTG
1 GTCAGAATTCCTGGTTGAGGGAATTG
747470 GTCAGAATTCCTGGTTGAGGGAATTG
1 GTCAGAATTCCTGGTTGAGGGAATTG
* *
747496 GTTAGAATTCCTGGTTGAGGGAATCG
1 GTCAGAATTCCTGGTTGAGGGAATTG
*
747522 TTCAGAATTCCTGGT
1 GTCAGAATTCCTGGT
747537 AGGAGGAATA
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 109 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (26 bp):
GTCAGAATTCCTGGTTGAGGGAATTG
Found at i:747738 original size:12 final size:12
Alignment explanation
Indices: 747721--747746 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
747711 TAGAAATACA
747721 TGTACTATTGTG
1 TGTACTATTGTG
747733 TGTACTATTGTG
1 TGTACTATTGTG
747745 TG
1 TG
747747 GTCAGTGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.27, T:0.50
Consensus pattern (12 bp):
TGTACTATTGTG
Found at i:749596 original size:16 final size:16
Alignment explanation
Indices: 749577--749616 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
749567 CCGATAATCA
749577 ACATCAAAAAACAAAC
1 ACATCAAAAAACAAAC
**
749593 ACATCAAATTACAAAC
1 ACATCAAAAAACAAAC
749609 ACATCAAA
1 ACATCAAA
749617 GCAACACTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12
Consensus pattern (16 bp):
ACATCAAAAAACAAAC
Found at i:752026 original size:14 final size:14
Alignment explanation
Indices: 752007--752053 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
751997 CGCTCAAGCC
*
752007 TGTAGTATTGGGCT
1 TGTAGTATCGGGCT
* *
752021 TGTAGTATCGTGCC
1 TGTAGTATCGGGCT
752035 TGTAGTATCGGGCT
1 TGTAGTATCGGGCT
752049 TGTAG
1 TGTAG
752054 AAATCAACCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.15, C:0.13, G:0.34, T:0.38
Consensus pattern (14 bp):
TGTAGTATCGGGCT
Found at i:756398 original size:19 final size:19
Alignment explanation
Indices: 756374--756411 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
756364 ATCTTAAACG
756374 ACATGGTTCAGTATACAAT
1 ACATGGTTCAGTATACAAT
756393 ACATGGTTCAGTATACAAT
1 ACATGGTTCAGTATACAAT
756412 GCATCGGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
ACATGGTTCAGTATACAAT
Found at i:759697 original size:45 final size:45
Alignment explanation
Indices: 759643--759772 Score: 251
Period size: 45 Copynumber: 2.9 Consensus size: 45
759633 GCTTCATAAA
759643 TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTCGTGAT
1 TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTCGTGAT
759688 TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTCGTGAT
1 TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTCGTGAT
*
759733 TCTGGACTCTATGGAAGATCTCGTTCCACCTGATCGCTTC
1 TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTC
759773 CCGATTGATC
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 84 1.00
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.35
Consensus pattern (45 bp):
TCTGGACTCTATGGAAGATCTTGTTCCACCTGATCGCTTCGTGAT
Found at i:761710 original size:42 final size:42
Alignment explanation
Indices: 761651--761730 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
761641 TAAAGTGATC
* *
761651 TGTTGCCATGGTGTTGTACTATATAACGTAACACTGTATTTT
1 TGTTGCCATGCTGTTGTACTATATAACATAACACTGTATTTT
*
761693 TGTTGCCATGCTGTTGTACTATATAACATAACATTGTA
1 TGTTGCCATGCTGTTGTACTATATAACATAACACTGTA
761731 ATCAAACGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (42 bp):
TGTTGCCATGCTGTTGTACTATATAACATAACACTGTATTTT
Found at i:763745 original size:185 final size:186
Alignment explanation
Indices: 763391--763764 Score: 680
Period size: 185 Copynumber: 2.0 Consensus size: 186
763381 TATCAAATCA
763391 TTTTTAGCGGAGCAATTTTCATTGTGGAAACAATTACTGAATTTTTTTTAATGTACAACTTAAAG
1 TTTTTAGCGGAGCAATTTTCATTGTGGAAACAATTACTGAATTTTTTTTAATGTACAACTTAAAG
*
763456 ACAGATTTTAGGTTTGTTTTTTTTAAACCAGGAAAACTATATCAAAGGCACTCTGATCGAAGCAG
66 ACAGATTTTAGGTTTGTTTTTTTTAAACAAGGAAAACTATATCAAAGGCACTCTGATCGAAGCAG
763521 AATTTCATCCTGTCAAAAACTGGTCTGACATAAATTCCAAATATTAAACAGACACC
131 AATTTCATCCTGTCAAAAACTGGTCTGACATAAATTCCAAATATTAAACAGACACC
763577 TTTTTAGCGGAGCAATTTTCATTGTGGAAACAATTACTGAATTTTGTTTTAATGTACAACTTAAA
1 TTTTTAGCGGAGCAATTTTCATTGTGGAAACAATTACTGAATTTT-TTTTAATGTACAACTTAAA
* * * *
763642 GACAGATTTTGGGTTTGTTTTTTTTTAACAAGGAAAACTAT-T-AAAGGTAGTCTGATCGAAGCA
65 GACAGATTTTAGGTTTGTTTTTTTTAAACAAGGAAAACTATATCAAAGGCACTCTGATCGAAGCA
763705 GAATTTCATCCTGTCAAAAACTGGTCTGACATAAATTCCAAATATTAAACAGACACC
130 GAATTTCATCCTGTCAAAAACTGGTCTGACATAAATTCCAAATATTAAACAGACACC
763762 TTT
1 TTT
763765 CTCCTGGCTT
Statistics
Matches: 182, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
185 79 0.43
186 46 0.25
187 57 0.31
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (186 bp):
TTTTTAGCGGAGCAATTTTCATTGTGGAAACAATTACTGAATTTTTTTTAATGTACAACTTAAAG
ACAGATTTTAGGTTTGTTTTTTTTAAACAAGGAAAACTATATCAAAGGCACTCTGATCGAAGCAG
AATTTCATCCTGTCAAAAACTGGTCTGACATAAATTCCAAATATTAAACAGACACC
Found at i:765079 original size:30 final size:30
Alignment explanation
Indices: 765037--765129 Score: 150
Period size: 30 Copynumber: 3.1 Consensus size: 30
765027 GTGCAGTGGG
* *
765037 CTGCCCATGTTTTATGGCCCTGGGTTTGTT
1 CTGCCCAGGTTTTATGGCCCTGGGTCTGTT
*
765067 TTGCCCAGGTTTTATGGCCCTGGGTCTGTT
1 CTGCCCAGGTTTTATGGCCCTGGGTCTGTT
*
765097 CTGCCCAGGTTTTATGGGCCTGGGTCTGTT
1 CTGCCCAGGTTTTATGGCCCTGGGTCTGTT
765127 CTG
1 CTG
765130 AAGCAGCAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.06, C:0.24, G:0.30, T:0.40
Consensus pattern (30 bp):
CTGCCCAGGTTTTATGGCCCTGGGTCTGTT
Found at i:765406 original size:17 final size:17
Alignment explanation
Indices: 765384--765472 Score: 153
Period size: 17 Copynumber: 5.2 Consensus size: 17
765374 AAGGCTCAAG
765384 GGGCAAAAATAAAACAA
1 GGGCAAAAATAAAACAA
765401 GGGCAAAAATAAAACAA
1 GGGCAAAAATAAAACAA
765418 GGGCAAAAATAAAAC-A
1 GGGCAAAAATAAAACAA
*
765434 GAGGCAAAAATAAAACAG
1 G-GGCAAAAATAAAACAA
765452 GGGCAAAAATAAAACAA
1 GGGCAAAAATAAAACAA
765469 GGGC
1 GGGC
765473 GAATACTTCC
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
16 2 0.03
17 65 0.96
18 1 0.01
ACGTcount: A:0.61, C:0.12, G:0.21, T:0.06
Consensus pattern (17 bp):
GGGCAAAAATAAAACAA
Found at i:768339 original size:30 final size:30
Alignment explanation
Indices: 768303--768395 Score: 168
Period size: 30 Copynumber: 3.1 Consensus size: 30
768293 GTAACTCTAA
768303 AGTGTTTCCAGGGTAGGATTAACTCCTCCT
1 AGTGTTTCCAGGGTAGGATTAACTCCTCCT
768333 AGTGTTTCCAGGGTAGGATTAACTCCTCCT
1 AGTGTTTCCAGGGTAGGATTAACTCCTCCT
* *
768363 AGTGTTTCAAGGGTAGGATTAACTCCTCTT
1 AGTGTTTCCAGGGTAGGATTAACTCCTCCT
768393 AGT
1 AGT
768396 TTACTGTAGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (30 bp):
AGTGTTTCCAGGGTAGGATTAACTCCTCCT
Found at i:768677 original size:138 final size:138
Alignment explanation
Indices: 768422--768685 Score: 440
Period size: 138 Copynumber: 1.9 Consensus size: 138
768412 TTTATTGCTT
* * *
768422 TATAATGCATGTTTTATAATTAAAACAATTGTTTTTCACACAAACCCATTCCTTGGCTCATAGTG
1 TATAATGCATGTTTTATAATTAAAACAATTATTTTTCACACAAACCCATTCCTTGACTCACAGTG
* * *
768487 AATGTCACAATTTCTAATTAATTCAATATTCTGAACCTCAGATATACTAAAATACTGTAGAATTG
66 AATGTCACAATTTCTAATCAATTCAATATTCTGAACCTCAGATACACAAAAATACTGTAGAATTG
768552 TGTTGGTC
131 TGTTGGTC
*
768560 TATAATGCATGTTTTA-AAGTTAAAACAATTATTTTTCACACAAACCCATTCCTTGACTCCCAGT
1 TATAATGCATGTTTTATAA-TTAAAACAATTATTTTTCACACAAACCCATTCCTTGACTCACAGT
*
768624 GAATGTCACAATTTCTAATCAATTCAATATTCTGAACCTTAGATACACAAAAATACTGTAGA
65 GAATGTCACAATTTCTAATCAATTCAATATTCTGAACCTCAGATACACAAAAATACTGTAGA
768686 TTCCTTAATT
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
137 2 0.02
138 115 0.98
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (138 bp):
TATAATGCATGTTTTATAATTAAAACAATTATTTTTCACACAAACCCATTCCTTGACTCACAGTG
AATGTCACAATTTCTAATCAATTCAATATTCTGAACCTCAGATACACAAAAATACTGTAGAATTG
TGTTGGTC
Found at i:770085 original size:2 final size:2
Alignment explanation
Indices: 770078--770169 Score: 152
Period size: 2 Copynumber: 46.0 Consensus size: 2
770068 GGATTTCAAT
770078 GA GA GA GA GA GA GA GA GA GA -A TGA GA -A TGA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA -GA GA GA -GA GA GA GA GA GA GA
770120 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
770162 GA GA GA GA
1 GA GA GA GA
770170 TGTAAGAACA
Statistics
Matches: 86, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.02
2 82 0.95
3 2 0.02
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
GA
Found at i:770202 original size:58 final size:58
Alignment explanation
Indices: 770140--770255 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
770130 GAGAGAGAGA
770140 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAAG-AACATCCCCCCCCCTC-ATTTT
1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAAGTAA-ATCCCCCCCCCTCAATTTT
770197 NGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAAGTAAATCCCCCCCCCTCAATTTT
1 -GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAAGTAAATCCCCCCCCCTCAATTTT
770256 CCTCCCTGAC
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.15
Consensus pattern (58 bp):
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAAGTAAATCCCCCCCCCTCAATTTT
Found at i:770203 original size:2 final size:2
Alignment explanation
Indices: 770198--770227 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
770188 CCTCATTTTN
770198 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
770228 TGTAAGTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:772109 original size:74 final size:74
Alignment explanation
Indices: 771986--772129 Score: 200
Period size: 74 Copynumber: 1.9 Consensus size: 74
771976 CATGCGAATC
* *
771986 AAATCCAACATCCAGTAGCACAAGATTACAAACCTACAGGAGTGGGTGAGGGACTCTGTCACAGA
1 AAATCCAACATCCAGTAGCACAACATTACAAACCAACAGGAGTGGGTGAGGGACTCTGTCACAGA
772051 AAACCCTTG
66 AAACCCTTG
* * * * *
772060 AAATCCAACATCCTGTCAG-ACAACATTACCAACCAACAGGTGTGTGTGAGGGACTCTGTCATAG
1 AAATCCAACATCCAGT-AGCACAACATTACAAACCAACAGGAGTGGGTGAGGGACTCTGTCACAG
*
772124 ACAACC
65 AAAACC
772130 TCCATTCAAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 59 0.97
75 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (74 bp):
AAATCCAACATCCAGTAGCACAACATTACAAACCAACAGGAGTGGGTGAGGGACTCTGTCACAGA
AAACCCTTG
Found at i:772868 original size:2 final size:2
Alignment explanation
Indices: 772861--772913 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
772851 AGGCAAGCAG
772861 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
772903 CT CT CT CT CT C
1 CT CT CT CT CT C
772914 AATTTTAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:774063 original size:33 final size:31
Alignment explanation
Indices: 773985--774051 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
773975 ACAATGGTAA
773985 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
1 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
774016 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
1 CATTCTCAGCAGTTATCTCTCTTTGCCCATT
774047 C-TTCT
1 CATTCT
774052 TATGCATAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.15, C:0.33, G:0.09, T:0.43
Consensus pattern (31 bp):
CATTCTCAGCAGTTATCTCTCTTTGCCCATT
Found at i:774252 original size:16 final size:16
Alignment explanation
Indices: 774231--774268 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
774221 ACGGAAGAGT
*
774231 GACAGACGGACGGACG
1 GACAGAAGGACGGACG
774247 GACAGAAGGACGGACG
1 GACAGAAGGACGGACG
774263 GACAGA
1 GACAGA
774269 GTGATTACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.21, G:0.42, T:0.00
Consensus pattern (16 bp):
GACAGAAGGACGGACG
Found at i:775591 original size:2 final size:2
Alignment explanation
Indices: 775584--775608 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
775574 TTGGCACCAA
775584 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
775609 GCATGACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:776634 original size:37 final size:37
Alignment explanation
Indices: 776579--776693 Score: 203
Period size: 37 Copynumber: 3.1 Consensus size: 37
776569 TTCATTTGAC
*
776579 CCAGGCTTATTTAAACGGTGACATACCCCACAGTGTA
1 CCAGGCTTATTTAGACGGTGACATACCCCACAGTGTA
*
776616 CCAGACTTATTTAGACGGTGACATACCCCACAGTGTA
1 CCAGGCTTATTTAGACGGTGACATACCCCACAGTGTA
*
776653 CCAGGCTTATTTAGACGGCGACATACCCCACAGTGTA
1 CCAGGCTTATTTAGACGGTGACATACCCCACAGTGTA
776690 CCAG
1 CCAG
776694 CTGTTTCACA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (37 bp):
CCAGGCTTATTTAGACGGTGACATACCCCACAGTGTA
Found at i:778175 original size:33 final size:33
Alignment explanation
Indices: 778133--778946 Score: 862
Period size: 33 Copynumber: 24.7 Consensus size: 33
778123 ACTTTTCCTT
* * *
778133 GGATTTTTGGAACATTACTCACCCTTTCCCCTA
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * * * *
778166 GGATATTTGGTACCTTACTCACCTTTTCCCCTT
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * * *
778199 GGATAATTGGAACATGACTCACTCTTTCAC-CCG
1 GGATATTTGGAACATTACTCACCCTTTC-CTCTG
* * *
778232 GGATGA-TTGGAACATTACTCATCCATTCCCCTG
1 GGAT-ATTTGGAACATTACTCACCCTTTCCTCTG
* * * * * *
778265 AGATATTTGAAACATTCCTCATCCTATCCCCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* *
778298 GGATATTAGGAACATTACTCACTCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* **
778331 GGATGA-TTGAAACATTACTCACAATTTCCTCTG
1 GGAT-ATTTGGAACATTACTCACCCTTTCCTCTG
* *
778364 GGATATTAGGAACATCACTCACCCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778397 GGATATTTGGAACATTCCTAACCATTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778430 GGATATTTGGAACATTACCCACCCTATCCCCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778463 GGATATCTGGAACATTCCTCACCATTT-CTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778495 GGATATTTGGAACATTAATCTCACTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778528 GGATATTAGGAACATTAATCGCCCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* *
778561 GGATATTTGGAACATTAATCGCCCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * * * *
778594 GGATATTGGGAACATTACCCACCCTATCCCCTT
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * * * *
778627 GAATATTTGGAACATTCCTAACCATTTCTTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* *
778660 GGATATTTGGAACATTAATCGCCCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* ** *
778693 GGATATTTGGAACATTAATTGCACTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778726 GGATATTAGGAACATTACTCACCATTTCTTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778759 CGATATTTAGAACATTACTCACCATTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * * *
778792 GGATATTAGGAACATTAATCGCACTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* **
778825 GGATATTAGGAACATTACTCACAATTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* * *
778858 GGATATTAGGAACATTAATCACCCTTTTCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
* *
778891 GGATATTTGGAACATTAATCACTCTTTCCTCTG
1 GGATATTTGGAACATTACTCACCCTTTCCTCTG
778924 GGATATTTGGAACATTACTCACC
1 GGATATTTGGAACATTACTCACC
778947 ATATCTCCTG
Statistics
Matches: 651, Mismatches: 123, Indels: 14
0.83 0.16 0.02
Matches are distributed among these distances:
32 28 0.04
33 620 0.95
34 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (33 bp):
GGATATTTGGAACATTACTCACCCTTTCCTCTG
Found at i:779403 original size:34 final size:34
Alignment explanation
Indices: 779128--779389 Score: 463
Period size: 34 Copynumber: 7.7 Consensus size: 34
779118 AACTCATTTT
*
779128 TTTTTCCATTGGATACTTAGCAA-ACAATTCATCC
1 TTTTTCCCTTGGATACTTAG-AACACAATTCATCC
779162 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
*
779196 TTTTTCCCTTGGATACTTAGAACACAATTCATCT
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
*
779230 TTTTTCCCTTGGATACTTGGAACACAATTCATCC
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
779264 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
779298 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
*
779332 TTTTTCCCTTGGATACTTTGAACACAATTCATCC
1 TTTTTCCCTTGGATACTTAGAACACAATTCATCC
*
779366 TTTTTCCCTTGGATACTTTGAACA
1 TTTTTCCCTTGGATACTTAGAACA
779390 TTACTCACCC
Statistics
Matches: 221, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
33 2 0.01
34 219 0.99
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.40
Consensus pattern (34 bp):
TTTTTCCCTTGGATACTTAGAACACAATTCATCC
Found at i:781178 original size:33 final size:33
Alignment explanation
Indices: 781138--781375 Score: 296
Period size: 33 Copynumber: 7.2 Consensus size: 33
781128 CGTCACAGGC
*
781138 CCCTCCCCCTGGGCTTTACTGGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
781171 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
781204 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
*
781237 CCCTCCCCCTGGGCTTTACTGGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
* * ** *
781270 CCCTCCCTCAGGGCTTCGTTTGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
* * * ** * *
781303 CCCTTCCTCTTGGCTTCGTTTGATGACACTGGC
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
* * *** *
781336 CCCTCCCTCTTGGCTTTGTTTGATGACACTGGG
1 CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
781369 CCCTCCC
1 CCCTCCC
781376 TCTTAGCTTC
Statistics
Matches: 190, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 190 1.00
ACGTcount: A:0.11, C:0.37, G:0.25, T:0.27
Consensus pattern (33 bp):
CCCTCCCCCTGGGCTTCACTGGATGACACTGGG
Found at i:781385 original size:99 final size:99
Alignment explanation
Indices: 781135--781388 Score: 337
Period size: 99 Copynumber: 2.6 Consensus size: 99
781125 AGCCGTCACA
*
781135 GGCCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCCCTGGGCTTCACTGGATGACAC
1 GGCCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCTCTGGGCTTCACTGGATGACAC
781200 TGGGCCCTCCCCCTGGGCTTCACTGGATGACACT
66 TGGGCCCTCCCCCTGGGCTTCACTGGATGACACT
* * ** *
781234 GGGCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCTCAGGGCTTCGTTTGATGACAC
1 GGCCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCTCTGGGCTTCACTGGATGACAC
* * * ** *
781299 TGGGCCCTTCCTCTTGGCTTCGTTTGATGACACT
66 TGGGCCCTCCCCCTGGGCTTCACTGGATGACACT
* * ** * **
781333 GGCCCCTCCCTCTTGGCTTTGTTTGATGACACTGGGCCCTCCCTCTTAGCTTCACT
1 GGCCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCTCTGGGCTTCACT
781389 TGTCCCTCCA
Statistics
Matches: 132, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
99 132 1.00
ACGTcount: A:0.11, C:0.37, G:0.25, T:0.28
Consensus pattern (99 bp):
GGCCCCTCCCCCTGGGCTTTACTGGATGACACTGGGCCCTCCCTCTGGGCTTCACTGGATGACAC
TGGGCCCTCCCCCTGGGCTTCACTGGATGACACT
Found at i:783375 original size:16 final size:16
Alignment explanation
Indices: 783356--783407 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
783346 ATCGATGTAT
783356 TGTCGTATCCATGAGA
1 TGTCGTATCCATGAGA
**
783372 TGTC-TATTCCATGACT
1 TGTCGTA-TCCATGAGA
*
783388 TGTCGTATCGATGAGA
1 TGTCGTATCCATGAGA
783404 TGTC
1 TGTC
783408 CATTCGGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 2 0.07
16 25 0.86
17 2 0.07
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (16 bp):
TGTCGTATCCATGAGA
Found at i:784215 original size:14 final size:15
Alignment explanation
Indices: 784173--784218 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
784163 TCACCGAGAC
*
784173 GAGACATCACCCTTAT
1 GAGAC-TCACCTTTAT
784189 GAGACTTCACCTTTAT
1 GAGAC-TCACCTTTAT
784205 GAGAC-CACCTTTAT
1 GAGACTCACCTTTAT
784219 CATATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 9 0.32
16 19 0.68
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (15 bp):
GAGACTCACCTTTAT
Found at i:784538 original size:18 final size:18
Alignment explanation
Indices: 784483--784539 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
784473 ATTTGATCAC
784483 ATAATACAATATCATAATAT
1 ATAATACAATATCAT-AT-T
*
784503 ATAAAACAATAT-AGTATT
1 ATAATACAATATCA-TATT
*
784521 ATATTACAATATCATATT
1 ATAATACAATATCATATT
784539 A
1 A
784540 CATCATAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 16 0.50
19 4 0.12
20 12 0.38
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAATACAATATCATATT
Found at i:792806 original size:21 final size:21
Alignment explanation
Indices: 792782--792847 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
792772 TATAATGTTA
*
792782 ACTTGTCAGATCTTTATGTCG
1 ACTTGTCAGATATTTATGTCG
**
792803 ACTTGTCAGATGA-TTATGTAA
1 ACTTGTCAGAT-ATTTATGTCG
792824 ACTTGTCAGATATTTATGTCG
1 ACTTGTCAGATATTTATGTCG
792845 ACT
1 ACT
792848 NTAACAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
20 1 0.03
21 37 0.97
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (21 bp):
ACTTGTCAGATATTTATGTCG
Found at i:792973 original size:21 final size:21
Alignment explanation
Indices: 792949--793015 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
792939 TATAATGTTA
*
792949 ACTTGTCAGATCTTTATGTCG
1 ACTTGTCAGATATTTATGTCG
**
792970 ACTTGTCAGATGA-TTATGTAA
1 ACTTGTCAGAT-ATTTATGTCG
792991 ACTTGTCAGATATTTATGTCG
1 ACTTGTCAGATATTTATGTCG
793012 ACTT
1 ACTT
793016 ATATGGTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
20 1 0.03
21 38 0.97
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (21 bp):
ACTTGTCAGATATTTATGTCG
Found at i:792974 original size:167 final size:166
Alignment explanation
Indices: 792698--793016 Score: 629
Period size: 167 Copynumber: 1.9 Consensus size: 166
792688 GTCAACCTCC
792698 GCTTCGCGTCGGTTGACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGG
1 GCTTCGCGTCGGTTGACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGG
792763 CACTATTTATATAATGTTAACTTGTCAGATCTTTATGTCGACTTGTCAGATGATTATGTAAACTT
66 CACTATTTATATAATGTTAACTTGTCAGATCTTTATGTCGACTTGTCAGATGATTATGTAAACTT
792828 GTCAGATATTTATGTCGACTNTAACAAAATAAATAGT
131 GTCAGATATTTATGTCGACT-TAACAAAATAAATAGT
792865 GCTTCGCGTCGGTTGACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGG
1 GCTTCGCGTCGGTTGACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGG
792930 CACTATTTATATAATGTTAACTTGTCAGATCTTTATGTCGACTTGTCAGATGATTATGTAAACTT
66 CACTATTTATATAATGTTAACTTGTCAGATCTTTATGTCGACTTGTCAGATGATTATGTAAACTT
792995 GTCAGATATTTATGTCGACTTA
131 GTCAGATATTTATGTCGACTTA
793017 TATGGTATTA
Statistics
Matches: 152, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
166 2 0.01
167 150 0.99
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (166 bp):
GCTTCGCGTCGGTTGACAATGGTTTTCTCGGGGTGTCAATTTCAACTGTTACCCTCCCAAACAGG
CACTATTTATATAATGTTAACTTGTCAGATCTTTATGTCGACTTGTCAGATGATTATGTAAACTT
GTCAGATATTTATGTCGACTTAACAAAATAAATAGT
Found at i:793134 original size:21 final size:21
Alignment explanation
Indices: 793109--793202 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
793099 ATGGTTATTT
*
793109 TCTGACAAGTCAACATAAAGA
1 TCTGACAAGTCAACATAAATA
**
793130 TCTGACAAGTTGACATAAATA
1 TCTGACAAGTCAACATAAATA
* *
793151 TCTGACAAGTCGACAT-TATCA
1 TCTGACAAGTCAACATAAAT-A
* * * *
793172 TATGAGAAGTTAACATAATTA
1 TCTGACAAGTCAACATAAATA
793193 TCTGACAAGT
1 TCTGACAAGT
793203 GGTGGCAGAT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
20 2 0.03
21 55 0.95
22 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (21 bp):
TCTGACAAGTCAACATAAATA
Found at i:793156 original size:42 final size:42
Alignment explanation
Indices: 793109--793202 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
793099 ATGGTTATTT
* * *
793109 TCTGACAAGTCAACATAAAGATCTGACAAGTTGACATAAATA
1 TCTGACAAGTCAACATAAACATATGACAAGTTAACATAAATA
* * * * *
793151 TCTGACAAGTCGACATTATCATATGAGAAGTTAACATAATTA
1 TCTGACAAGTCAACATAAACATATGACAAGTTAACATAAATA
793193 TCTGACAAGT
1 TCTGACAAGT
793203 GGTGGCAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (42 bp):
TCTGACAAGTCAACATAAACATATGACAAGTTAACATAAATA
Found at i:799598 original size:36 final size:36
Alignment explanation
Indices: 799521--799600 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
799511 TTACCCCCCC
* *
799521 CCCCCTTTACCCCCCCACAACTTGCTTGTTACCGCN
1 CCCCCTTTACCCCCACACAACTTGCTTGTTACCGCT
* *
799557 CCCCCTTTACCTCCACATC-ACTTGCTTGTTATCGCT
1 CCCCCTTTACCCCCACA-CAACTTGCTTGTTACCGCT
*
799593 TCCCCTTT
1 CCCCCTTT
799601 TATTGACAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
36 37 0.97
37 1 0.03
ACGTcount: A:0.12, C:0.46, G:0.07, T:0.33
Consensus pattern (36 bp):
CCCCCTTTACCCCCACACAACTTGCTTGTTACCGCT
Found at i:800289 original size:18 final size:20
Alignment explanation
Indices: 800266--800323 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 20
800256 AGTAATTATG
800266 TTGTATCTTGTACAATA-T-
1 TTGTATCTTGTACAATACTC
*
800284 TTGTATCTTATACAATAGAACTC
1 TTGTATCTTGTACAAT---ACTC
800307 TTGTATCTTGTACAATA
1 TTGTATCTTGTACAATA
800324 ATAATCTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 15 0.45
20 1 0.03
21 1 0.03
22 1 0.03
23 15 0.45
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (20 bp):
TTGTATCTTGTACAATACTC
Found at i:800331 original size:23 final size:23
Alignment explanation
Indices: 800244--800670 Score: 402
Period size: 23 Copynumber: 18.7 Consensus size: 23
800234 TCATACAACA
* * *
800244 TGTATCATGTACAGTAATTATGT
1 TGTATCTTGTACAATAATTATCT
800267 TGTATCTTGTAC---AA-TAT-T
1 TGTATCTTGTACAATAATTATCT
*
800285 TGTATCTTATACAATAGA--ACTCT
1 TGTATCTTGTACAATA-ATTA-TCT
*
800308 TGTATCTTGTACAATAATAATCT
1 TGTATCTTGTACAATAATTATCT
* * *
800331 TATATATTGTACAATTATTATCT
1 TGTATCTTGTACAATAATTATCT
*
800354 TGTAATATCTTGTACAATAATTTTCT
1 TG---TATCTTGTACAATAATTATCT
* * *
800380 TGCATCTCGTACAATAATTTTCT
1 TGTATCTTGTACAATAATTATCT
*
800403 TGTATCTTGTACAATAATAATCT
1 TGTATCTTGTACAATAATTATCT
* * *
800426 TGCATCTCGTACAATAATTTTCT
1 TGTATCTTGTACAATAATTATCT
*
800449 TGTATCTTGTACAATAATAATCT
1 TGTATCTTGTACAATAATTATCT
* * *
800472 TGCATCTCGTACAATAATTTTCT
1 TGTATCTTGTACAATAATTATCT
*
800495 TGTATCTTGTACAATAATAATCT
1 TGTATCTTGTACAATAATTATCT
* * *
800518 TGCATCTCGTACAATAATTTTCT
1 TGTATCTTGTACAATAATTATCT
*
800541 TGTATCTTGTACAATAATAATCT
1 TGTATCTTGTACAATAATTATCT
* * *
800564 TGTATTTTGTACAATGATCATCT
1 TGTATCTTGTACAATAATTATCT
* ** *
800587 TCTATCTTGTATGATAATAATCT
1 TGTATCTTGTACAATAATTATCT
*
800610 TGTATGTTGTACAATAATTATCT
1 TGTATCTTGTACAATAATTATCT
* * ** *
800633 TGT-TTTATGTTCAATGTTTACCT
1 TGTATCT-TGTACAATAATTATCT
800656 TGTATCTTGTACAAT
1 TGTATCTTGTACAAT
800671 GTGTATCGTG
Statistics
Matches: 329, Mismatches: 62, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
18 12 0.04
19 3 0.01
20 2 0.01
21 2 0.01
22 5 0.02
23 282 0.86
24 3 0.01
26 20 0.06
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (23 bp):
TGTATCTTGTACAATAATTATCT
Found at i:800355 original size:46 final size:46
Alignment explanation
Indices: 800305--800635 Score: 446
Period size: 46 Copynumber: 7.1 Consensus size: 46
800295 ACAATAGAAC
** * * * *
800305 TCTTGTATCTTGTACAATAATAATCTTATATATTGTACAATTATTA
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
**
800351 TCTTGTAATATCTTGTACAATAATTTTCTTGCATCTCGTACAATAATTT
1 TCTTG---TATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
800400 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
800446 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
800492 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
* * * * **
800538 TCTTGTATCTTGTACAATAATAATCTTGTATTTTGTACAATGATCA
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
* ** * * * *
800584 TCTTCTATCTTGTATGATAATAATCTTGTATGTTGTACAATAATTA
1 TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
800630 TCTTGT
1 TCTTGT
800636 TTTATGTTCA
Statistics
Matches: 259, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
46 221 0.85
49 38 0.15
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (46 bp):
TCTTGTATCTTGTACAATAATAATCTTGCATCTCGTACAATAATTT
Found at i:801819 original size:31 final size:31
Alignment explanation
Indices: 801780--804374 Score: 3468
Period size: 31 Copynumber: 82.5 Consensus size: 31
801770 CCAGATCAAG
*
801780 AAAA-GTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
801810 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
801841 AAAAAGTCAGTCAGATACATCAACCAGGTC-
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
801871 AAAAGGTCAGTCAGATACATCAACCA-GTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
801901 AAAAGGTCAGTCAGATACATCAACCATGTC-
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
801931 AAGAAGGTCAGTCAGATACATCAACCAGATCT
1 AA-AAGGTCAGTCAGATACATCAACCAGGTCT
* *
801963 AAAAGGTCAGTCAGATACATCAACCAAGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * **
801994 AGAAAAGTCAGTCAGCTACATCAATTAGGTCT
1 A-AAAGGTCAGTCAGATACATCAACCAGGTCT
*
802026 AAAAGGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
802057 AAACA-GTCAGTCAGATACATCAACCAGGTCT
1 AAA-AGGTCAGTCAGATACATCAACCAGGTCT
*
802088 AAAAGGTCACTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802119 AAAAGGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802150 AAAAGGTCAGTCACATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802181 AAAAGGTCACTCAGATACATCAACCATGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802212 AAAAGGTCACTCAGATACATCAACCAGGTGT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
802243 AGAAGGTCACTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802274 AAAAGGTCAGTCAGATACATCAACCA-GTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802304 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802335 AAATGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802366 AAAAGGTCAGTCAGATACATCAACCAGGTGT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802397 AAAAGGTCAGACAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802428 AAAAGGTCAGTCAGATACATCAACCA-GTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802458 AAAAGGTCAGTCAGATACACCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
802489 AAACGGTCAGTCAGATACATCAACCATGTCAAGA
1 AAAAGGTCAGTCAGATACATCAACCAGGTC---T
** * * **
802523 AAAATTATTCTTCGATCAGATACATCAAGAGTAACATTATCTTGGT
1 AAAA--GGTC--AG-TCAGATACATC---A--ACCA-GGTC----T
* *
802569 CAAGGGAGGTCAGTCAGATACATCAACCAGGTCA
1 AAA---AGGTCAGTCAGATACATCAACCAGGTCT
* *
802603 AAAAAGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
**
802634 AATGGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
802665 AAACGGTCAGTCCGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802696 AAACGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802727 AAAAGGTCACTCAGATACATCAACCATGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802758 AAAAGGTCACTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802789 AAAAGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802820 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802851 AAACGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802882 AAAAAGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
802913 AAAAAGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
802944 AAAAGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
802975 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803006 AAAAGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803037 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
803068 AAACGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
803099 AAACGGTCAGTCAGATACATCAACCAAGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803130 AGAAAGGTCAGTCAGATGCATCAACCAGGTCT
1 A-AAAGGTCAGTCAGATACATCAACCAGGTCT
*
803162 AAAAGGTCACTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
803193 AAACGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803224 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
803255 AAAAAGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
803286 AAAAGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803317 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803348 AAAAGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803379 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803410 AAACGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
803441 AAACGGTCAGTCAGATACATCAACCAAGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803472 AGAAAGGTCAGTCAGATGCATCAACCAGGTCT
1 A-AAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
803504 AAAAAGTCAGTCAGATGCATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803535 AAACA-GTCAGTCAGATACATCAACCAGATCT
1 AAA-AGGTCAGTCAGATACATCAACCAGGTCT
*
803566 AAAAGGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
803597 AAACA-GTCAGTCAGATACATCAACCAGGTCT
1 AAA-AGGTCAGTCAGATACATCAACCAGGTCT
**
803628 AAAAGGTCAGTCAGACGCATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803659 AAAAGGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803690 AAACA-GTCAGTCAGATACATCAACCAGATCT
1 AAA-AGGTCAGTCAGATACATCAACCAGGTCT
*
803721 AAAAGGTCAGTCAGATACATCAACCAGGTGT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
803752 AAAAGGTCACTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803783 AAAAGGTCAGTCAGATACATCAACCA-GTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803813 AAAAGATCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
803844 AAAAGGTCAGTCAGATACATCAACCAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
803875 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * * *
803906 AAACGGTCAGTCAGATACATCAATCATGTCAAGA
1 AAAAGGTCAGTCAGATACATCAACCAGGTC---T
** * * **
803940 AAAATTATTCTTCGATCAGATACATCAAGAGTAACATTATCCTGGT
1 AAAA--GGTC--AG-TCAGATACATC---A--ACCA-GGT-C---T
* *
803986 CAAGGGAGGTCAGTCAGATACATCAACCAGGTCA
1 AAA---AGGTCAGTCAGATACATCAACCAGGTCT
* *
804020 AAAAAGTCAGTCAGATACATCAACCAGATCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
** *
804051 AATGGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
804082 AAACGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
**
804113 AAAAGGTCAGTCAGATACATCAAGTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* * *
804144 AAACGGTCACTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
804175 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
804206 AAACGGTCAGTCAGATACATCAACCATGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
804237 AAAAGGTCAGTCAGATACATCAACCA-GTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
804267 AAAAGGTCAGTCAGATACATCAACCAGGTCA
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
*
804298 AAAAGGTCAGTCAGATACATCAACTAGGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
* *
804329 AAACGGTCAGTCAGATACATCAACCATGTCT
1 AAAAGGTCAGTCAGATACATCAACCAGGTCT
804360 AAAAGGTCAGTCAGA
1 AAAAGGTCAGTCAGA
804375 GGGAGGTCAT
Statistics
Matches: 2285, Mismatches: 224, Indels: 111
0.87 0.09 0.04
Matches are distributed among these distances:
29 3 0.00
30 177 0.08
31 1920 0.84
32 85 0.04
34 10 0.00
36 4 0.00
37 1 0.00
38 5 0.00
39 28 0.01
41 2 0.00
42 2 0.00
44 28 0.01
45 7 0.00
46 7 0.00
47 4 0.00
49 2 0.00
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.20
Consensus pattern (31 bp):
AAAAGGTCAGTCAGATACATCAACCAGGTCT
Found at i:804415 original size:32 final size:32
Alignment explanation
Indices: 804377--804481 Score: 192
Period size: 32 Copynumber: 3.3 Consensus size: 32
804367 CAGTCAGAGG
* *
804377 GAGGTCATTTAGATATATCAAACAGGTCAAGG
1 GAGGTCATTTAGATACATCAAACAGGTCAAGA
804409 GAGGTCATTTAGATACATCAAACAGGTCAAGA
1 GAGGTCATTTAGATACATCAAACAGGTCAAGA
804441 GAGGTCATTTAGATACATCAAACAGGTCAAGA
1 GAGGTCATTTAGATACATCAAACAGGTCAAGA
804473 GAGGTCATT
1 GAGGTCATT
804482 CTCCAATCAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (32 bp):
GAGGTCATTTAGATACATCAAACAGGTCAAGA
Found at i:805358 original size:165 final size:166
Alignment explanation
Indices: 805096--805511 Score: 586
Period size: 165 Copynumber: 2.5 Consensus size: 166
805086 CTGGCATCCG
* * ** *
805096 ATTGGTACAGAAATATATCCCACAATATGGCATGCCTATACAAATTGTGTGTTAAAATTTCAAGC
1 ATTGGTACAAAAATATATCCCACGATATGGCATGCCTATACAAATACTGTGTAAAAATTTCAAGC
* * * **
805161 ATCTGCTATAAATAGCTGCTGAGAAATCTTTGAGGAAAATTTGTTTGAAAATTTTGGCTA-AAAT
66 ATCTGCGATAAATAGTTGCTAAGAAATCTTTGACAAAAATTTGTTTGAAAATTTTGGCTAGAAAT
* *
805225 AAACAAAGTAC-TCATTTAACAGGAAGTTGACGTCCAT
131 AAACAAAGT-CGTCATTTAACAGGAAGTTAAAGT-CAT
** *
805262 -TTGGTACAAAAATATATCCCACGATAAAGCATGCCTATCCAAATACTGTGTAAAAATTTCAAGC
1 ATTGGTACAAAAATATATCCCACGATATGGCATGCCTATACAAATACTGTGTAAAAATTTCAAGC
* * * *
805326 ACCTGCGATAAACAGTTGCTAAGAATTCTTTGACAAAAATTTGTTTGAAAATTTTTGCTAGAAAT
66 ATCTGCGATAAATAGTTGCTAAGAAATCTTTGACAAAAATTTGTTTGAAAATTTTGGCTAGAAAT
*
805391 AAACAAAGTCGTCATTTAACAGGAAGTTAAAGTCTT
131 AAACAAAGTCGTCATTTAACAGGAAGTTAAAGTCAT
* *
805427 ATTGGTACAAATATATATCCCACGATATGGTATGCCTATACAAATACTGTGTAAAAATTTCAAGC
1 ATTGGTACAAAAATATATCCCACGATATGGCATGCCTATACAAATACTGTGTAAAAATTTCAAGC
*
805492 ATCTGCGATGAATAGTTGCT
66 ATCTGCGATAAATAGTTGCT
805512 GAGATAAATG
Statistics
Matches: 219, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
165 110 0.50
166 109 0.50
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (166 bp):
ATTGGTACAAAAATATATCCCACGATATGGCATGCCTATACAAATACTGTGTAAAAATTTCAAGC
ATCTGCGATAAATAGTTGCTAAGAAATCTTTGACAAAAATTTGTTTGAAAATTTTGGCTAGAAAT
AAACAAAGTCGTCATTTAACAGGAAGTTAAAGTCAT
Found at i:805563 original size:12 final size:12
Alignment explanation
Indices: 805539--805605 Score: 62
Period size: 12 Copynumber: 5.6 Consensus size: 12
805529 AATTTTTGTT
*
805539 ACGGACGGACAG
1 ACGGACAGACAG
*
805551 ACAGACAGACAG
1 ACGGACAGACAG
*
805563 ACGGACAGACGG
1 ACGGACAGACAG
* *
805575 ATGGACAGATAG
1 ACGGACAGACAG
* *
805587 ATGGGCAGACAG
1 ACGGACAGACAG
*
805599 ACAGACA
1 ACGGACA
805606 CACAAGGGTA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.34, T:0.04
Consensus pattern (12 bp):
ACGGACAGACAG
Found at i:806273 original size:25 final size:25
Alignment explanation
Indices: 806245--807739 Score: 1393
Period size: 25 Copynumber: 60.0 Consensus size: 25
806235 AGACTGAATA
**
806245 TACACTGCA-AATGTTACACTTACTC
1 TACACTG-ATAATGTTACACTTAAAC
* * * * *
806270 TACAATGATAGTGTAAAACTTTAAC
1 TACACTGATAATGTTACACTTAAAC
806295 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
806320 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806345 TACACTGATACTGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
806370 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* * *
806395 TACACTAATAGTTTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806420 TACACTGACAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806445 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
806470 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806495 TACACTGATACTGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806520 TACACCG---ATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806542 TACACTGACAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806567 TACACTGATAGTGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
806592 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* * * *
806617 TACGCTGATAGTTTTACACTTAACC
1 TACACTGATAATGTTACACTTAAAC
806642 TACACTGA-AAGTGTTACACTTAAAC
1 TACACTGATAA-TGTTACACTTAAAC
806667 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
806692 TACACTGACAATGTTACACTTCAAC
1 TACACTGATAATGTTACACTTAAAC
806717 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
806742 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
806767 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
806792 TACACTGATAGTGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
806817 TGCACTGATAATGTTACACTTATAC
1 TACACTGATAATGTTACACTTAAAC
* * * *
806842 GACACTGATACTG-TAGATTCCTTATTAAA
1 TACACTGATAATGTTACA---CTTA--AAC
* * *
806871 TGCGA--GA-AATTATTATCCACTTAAAA
1 TAC-ACTGATAA-TGTTA--CACTTAAAC
* * * * *
806897 T-CGC-GAGAA-G-CACTCTT-TAC
1 TACACTGATAATGTTACACTTAAAC
* * * * * **
806917 CA-ATTTTAAAATCTCGC-CATT--A-
1 TACA-CTGATAATGTTACAC-TTAAAC
**** * * ** *
806939 TTTTTTGAGAGTTGAGA-ACTATGAGAAAT
1 TACACTGATA-ATGTTACACT-T---AAAC
* * * * * **
806968 TAGAAT-A-AAAGTTCCGCATT-CGC
1 TACACTGATAATGTTACAC-TTAAAC
** * ** * ** * *
806991 GT--TTTTATGTTCTCGCAATTTGATAC
1 -TACACTGATAATGTTAC-ACTT-AAAC
* * * * * * * *
807017 AAAACAG-CAAGGTCGCAGAATTAAA-
1 TACACTGATAATGT--TACACTTAAAC
* * * ** **
807042 TACTC-GCGTAAT-ATA-A-GGAATT
1 TACACTG-ATAATGTTACACTTAAAC
807064 TACA--G-TAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
807086 TACACTGACAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* **
807111 TACACTGACAATGTTACAAATAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
807136 TACACTGATAATGTAACATTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
807161 TACACTGACAATGTTACAATTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
807186 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807211 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807236 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807261 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807286 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807311 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807336 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807361 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807386 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807411 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807436 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
*
807461 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
* * *
807486 TACACTGACAATGTTACAATTAGAC
1 TACACTGATAATGTTACACTTAAAC
* **
807511 TACACTGACAATGTTACAAATAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
807536 TACACTGACAATGTTACAATTAAAC
1 TACACTGATAATGTTACACTTAAAC
* *
807561 TACACTGACAATGTTACAATTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
807586 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
807611 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
* * ** *
807636 TTATATACTCATCGTGTTACAATTAAAC
1 ---TACACTGATAATGTTACACTTAAAC
807664 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
*
807689 TACACTGATAATGTTACACTTAGAC
1 TACACTGATAATGTTACACTTAAAC
807714 TACACTGATAATGTTACACTTAAAC
1 TACACTGATAATGTTACACTTAAAC
807739 T
1 T
807740 TATATACTCA
Statistics
Matches: 1242, Mismatches: 170, Indels: 116
0.81 0.11 0.08
Matches are distributed among these distances:
19 4 0.00
20 3 0.00
21 8 0.01
22 39 0.03
23 8 0.01
24 16 0.01
25 1099 0.88
26 15 0.01
27 11 0.01
28 31 0.02
29 6 0.00
30 1 0.00
31 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (25 bp):
TACACTGATAATGTTACACTTAAAC
Found at i:807683 original size:14 final size:14
Alignment explanation
Indices: 807664--807733 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
807654 ACAATTAAAC
807664 TACACTGATAATGT
1 TACACTGATAATGT
**
807678 TACACT--TAA-AC
1 TACACTGATAATGT
807689 TACACTGATAATGT
1 TACACTGATAATGT
*
807703 TACACT--T-A-GAC
1 TACACTGATAATG-T
807714 TACACTGATAATGT
1 TACACTGATAATGT
807728 TACACT
1 TACACT
807734 TAAACTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
10 1 0.02
11 13 0.31
12 4 0.10
13 4 0.10
14 19 0.45
15 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (14 bp):
TACACTGATAATGT
Found at i:809640 original size:24 final size:25
Alignment explanation
Indices: 809599--809677 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
809589 CAAGTGCCCT
* * *
809599 ACACTGATAATTCCACACCTGTTAG
1 ACACTGATAGTTCCACACCTGCTAA
*
809624 ACACTGAT-GTTCCACACCAGCTAA
1 ACACTGATAGTTCCACACCTGCTAA
* *
809648 ACACTGATAGTTCTACACCTGCTGA
1 ACACTGATAGTTCCACACCTGCTAA
809673 ACACT
1 ACACT
809678 AATAATTCTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
24 20 0.43
25 26 0.57
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (25 bp):
ACACTGATAGTTCCACACCTGCTAA
Found at i:809686 original size:25 final size:25
Alignment explanation
Indices: 809637--809687 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
809627 CTGATGTTCC
* *
809637 ACACCAGCTAAACACTGATAGTTCT
1 ACACCAGCTAAACACTAATAATTCT
* *
809662 ACACCTGCTGAACACTAATAATTCT
1 ACACCAGCTAAACACTAATAATTCT
809687 A
1 A
809688 AGTGCCCTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.25
Consensus pattern (25 bp):
ACACCAGCTAAACACTAATAATTCT
Found at i:809762 original size:25 final size:25
Alignment explanation
Indices: 809705--809792 Score: 126
Period size: 25 Copynumber: 3.6 Consensus size: 25
809695 TACCCTAATA
809705 GTTACACACTGATTA-TTCCACA-CT
1 GTTACACACTGA-TAGTTCCACACCT
*
809729 GTTAAACACTGATAGTTCCACACCT
1 GTTACACACTGATAGTTCCACACCT
*
809754 GTTACACACTGATAGTTTCACACCT
1 GTTACACACTGATAGTTCCACACCT
*
809779 GTTAGACACTGATA
1 GTTACACACTGATA
809793 ATTCTAAGTG
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
23 2 0.03
24 18 0.31
25 38 0.66
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (25 bp):
GTTACACACTGATAGTTCCACACCT
Found at i:809825 original size:111 final size:113
Alignment explanation
Indices: 809597--809910 Score: 322
Period size: 111 Copynumber: 2.8 Consensus size: 113
809587 TTCAAGTGCC
* * * * *
809597 CTACACTGATAATTCCACACCTGTTAGACACTGAT-GTTCCACACCAGCTAAACACTGATAG-TT
1 CTACACTGATTATTCCACA-CTGTTAAACACTGATAGTTCCACACCTGTTACACACTGATAGTTT
* * *
809660 CTACACCTGCT-GAACACTAATAATTCTAAGTGCCCTACCCTAATAGTTA
65 CTACACCTGTTAG-ACACTGATAATTCTAAGTGCCCTACACTAATAGTTA
809709 C-ACACTGATTATTCCACACTGTTAAACACTGATAGTTCCACACCTGTTACACACTGATAGTTTC
1 CTACACTGATTATTCCACACTGTTAAACACTGATAGTTCCACACCTGTTACACACTGATAGTTTC
* *
809773 -ACACCTGTTAGACACTGATAATTCTAAGTGCCTTACACTGATAGTT-
66 TACACCTGTTAGACACTGATAATTCTAAGTGCCCTACACTAATAGTTA
** * * * *
809819 CTACACTTG-TCCTACACTGACGCCTGTTAAACACTGATAGTTCCACACCTGTT-CAACACTAAC
1 CTACAC-TGAT--TATTC-CAC-ACTGTTAAACACTGATAGTTCCACACCTGTTAC-ACACTGAT
* * *
809882 A-TTTCTATACATGTTAAACACTGATAATT
60 AGTTTCTACACCTGTTAGACACTGATAATT
809911 ATTAACATTT
Statistics
Matches: 172, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
110 15 0.09
111 83 0.48
112 7 0.04
113 3 0.02
114 7 0.04
115 57 0.33
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.30
Consensus pattern (113 bp):
CTACACTGATTATTCCACACTGTTAAACACTGATAGTTCCACACCTGTTACACACTGATAGTTTC
TACACCTGTTAGACACTGATAATTCTAAGTGCCCTACACTAATAGTTA
Found at i:809838 original size:25 final size:25
Alignment explanation
Indices: 809734--809838 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 25
809724 ACACTGTTAA
* *
809734 ACACTGATAGTTCCACACCTGTTAC-
1 ACACTGATAGTTCTACACCTG-TCCT
***
809759 ACACTGATAGTT-TCACACCTGTTAG
1 ACACTGATAGTTCT-ACACCTGTCCT
* *
809784 ACACTGATAATTCTA-A-GTG-CCTT
1 ACACTGATAGTTCTACACCTGTCC-T
*
809807 ACACTGATAGTTCTACACTTGTCCT
1 ACACTGATAGTTCTACACCTGTCCT
809832 ACACTGA
1 ACACTGA
809839 CGCCTGTTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
23 16 0.25
24 3 0.05
25 41 0.65
26 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (25 bp):
ACACTGATAGTTCTACACCTGTCCT
Found at i:809870 original size:25 final size:25
Alignment explanation
Indices: 809841--809907 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
809831 TACACTGACG
809841 CCTGTTAAACACTGATAGTTCCACA
1 CCTGTTAAACACTGATAGTTCCACA
* * * * * *
809866 CCTGTTCAACACTAACATTTCTATA
1 CCTGTTAAACACTGATAGTTCCACA
*
809891 CATGTTAAACACTGATA
1 CCTGTTAAACACTGATA
809908 ATTATTAACA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (25 bp):
CCTGTTAAACACTGATAGTTCCACA
Found at i:818491 original size:42 final size:42
Alignment explanation
Indices: 818429--818689 Score: 384
Period size: 42 Copynumber: 6.1 Consensus size: 42
818419 GGTGCAGGGG
*
818429 TAAATAGATGTCAGCTCAGTCTGTAGATA-ACAAACTACAAAC
1 TAAATAGATGTCAGCTCAGTCTGTAGA-ACACAAACTAGAAAC
*
818471 TATATAGATGTCAGCTCAGTCTGTAGATA-ACAAACTAGAAAC
1 TAAATAGATGTCAGCTCAGTCTGTAGA-ACACAAACTAGAAAC
*
818513 TAAATAGATGTCAGCTCAGTCTGTAGATA-ACAAACTAGAAAT
1 TAAATAGATGTCAGCTCAGTCTGTAGA-ACACAAACTAGAAAC
*
818555 TAAATAGATGTCGGCTCAGTCTGTAGAACACAAACTAGAAAC
1 TAAATAGATGTCAGCTCAGTCTGTAGAACACAAACTAGAAAC
*
818597 TAAATAGCTAGATGTCAGCTCAGTCTGTAGAACACAAATTAGAAAC
1 T-AA-A--TAGATGTCAGCTCAGTCTGTAGAACACAAACTAGAAAC
818643 TAAATAGATGTCAGCTCAGTCTGTAGAACACAAACTAGAAAC
1 TAAATAGATGTCAGCTCAGTCTGTAGAACACAAACTAGAAAC
*
818685 GAAAT
1 TAAAT
818690 TATTTTTGGA
Statistics
Matches: 204, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
41 1 0.00
42 160 0.78
43 2 0.01
44 2 0.01
45 2 0.01
46 37 0.18
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (42 bp):
TAAATAGATGTCAGCTCAGTCTGTAGAACACAAACTAGAAAC
Found at i:818650 original size:88 final size:86
Alignment explanation
Indices: 818432--818689 Score: 398
Period size: 88 Copynumber: 3.0 Consensus size: 86
818422 GCAGGGGTAA
* *
818432 ATAGATGTCAGCTCAGTCTGTAGATAACAAACTACAAACTATATAGATGTCAGCTCAGTCTGTAG
1 ATAGATGTCAGCTCAGTCTGTAGATAACAAACTAGAAACTAAATAGATGTCAGCTCAGTCTGTAG
818497 ATA-ACAAACTAGAAACT-AA-
66 A-ACACAAACTAGAAACTAAAT
* *
818516 ATAGATGTCAGCTCAGTCTGTAGATAACAAACTAGAAATTAAATAGATGTCGGCTCAGTCTGTAG
1 ATAGATGTCAGCTCAGTCTGTAGATAACAAACTAGAAACTAAATAGATGTCAGCTCAGTCTGTAG
818581 AACACAAACTAGAAACTAAAT
66 AACACAAACTAGAAACTAAAT
*
818602 AGCTAGATGTCAGCTCAGTCTGTAGA-ACACAAATTAGAAACTAAATAGATGTCAGCTCAGTCTG
1 A--TAGATGTCAGCTCAGTCTGTAGATA-ACAAACTAGAAACTAAATAGATGTCAGCTCAGTCTG
*
818666 TAGAACACAAACTAGAAACGAAAT
63 TAGAACACAAACTAGAAACTAAAT
818690 TATTTTTGGA
Statistics
Matches: 160, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
83 1 0.01
84 76 0.47
85 2 0.01
86 1 0.01
87 1 0.01
88 79 0.49
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (86 bp):
ATAGATGTCAGCTCAGTCTGTAGATAACAAACTAGAAACTAAATAGATGTCAGCTCAGTCTGTAG
AACACAAACTAGAAACTAAAT
Found at i:819222 original size:38 final size:38
Alignment explanation
Indices: 819167--819239 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
819157 ATGCAGTATG
* *
819167 ATGTTGTAGGTAAGACATCATTTGTCTCTCTAGCAATA
1 ATGTTGTAGGTAAGACATCAATTGTCTCTCCAGCAATA
*
819205 ATGTTGTAGGTAGGACATCAATTGTCTCTCCAGCA
1 ATGTTGTAGGTAAGACATCAATTGTCTCTCCAGCA
819240 TTCATTGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (38 bp):
ATGTTGTAGGTAAGACATCAATTGTCTCTCCAGCAATA
Found at i:820907 original size:26 final size:26
Alignment explanation
Indices: 820854--820921 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
820844 CATTCAGGAA
* * *
820854 ATCTGATAATCCA-TCAGTCACTGAG
1 ATCTGATAATCCACACAATCACTAAG
820879 ATCTGATAATCCACACAATCACTAAG
1 ATCTGATAATCCACACAATCACTAAG
* *
820905 ATCTGTTCATCCACACA
1 ATCTGATAATCCACACA
820922 TGAATCCGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 13 0.35
26 24 0.65
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.26
Consensus pattern (26 bp):
ATCTGATAATCCACACAATCACTAAG
Found at i:823871 original size:18 final size:18
Alignment explanation
Indices: 823847--824548 Score: 567
Period size: 18 Copynumber: 38.9 Consensus size: 18
823837 ACAGACACTG
*
823847 ATAGACACTGCAAACATG
1 ATAGACACTGCAAACATA
* * * *
823865 ATGGACACTGTAAATAATT
1 ATAGACACTGCAAA-CATA
* *
823884 ATAGACACTACAAACAAA
1 ATAGACACTGCAAACATA
* *
823902 ATAGACAGTGCAGACATA
1 ATAGACACTGCAAACATA
* * *
823920 ACAGACACTGCAGACAAA
1 ATAGACACTGCAAACATA
*
823938 ATAGACACTGCAAACACA
1 ATAGACACTGCAAACATA
*
823956 ATAGACACTGCAAACACA
1 ATAGACACTGCAAACATA
* *
823974 ATAAACACTGCAAACACA
1 ATAGACACTGCAAACATA
* * *
823992 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824010 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824028 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* *
824046 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* *
824064 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* * *
824082 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824100 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* *
824118 ATAGACACTGCAAATACA
1 ATAGACACTGCAAACATA
* *
824136 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
*
824154 ATAGACACTGCAAACACA
1 ATAGACACTGCAAACATA
*
824172 ATAAACACTGCAAACATA
1 ATAGACACTGCAAACATA
* * *
824190 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824208 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824226 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824244 ATATACACTACAAACACA
1 ATAGACACTGCAAACATA
* *
824262 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* * *
824280 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * * *
824298 ATAGGCACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824316 ATATACACTACAAACACA
1 ATAGACACTGCAAACATA
* *
824334 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* *
824352 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* *
824370 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* *
824388 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* * *
824406 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824424 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* *
824442 ATAGACACTGCAAATACA
1 ATAGACACTGCAAACATA
* *
824460 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* *
824478 ATAGACACTGTAAACACA
1 ATAGACACTGCAAACATA
* * *
824496 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
* * *
824514 ATAGACACTACATACACA
1 ATAGACACTGCAAACATA
*
824532 ATAGACACTGTAAACAT
1 ATAGACACTGCAAACAT
824549 GGCCCATTCT
Statistics
Matches: 611, Mismatches: 72, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
18 598 0.98
19 13 0.02
ACGTcount: A:0.50, C:0.25, G:0.09, T:0.16
Consensus pattern (18 bp):
ATAGACACTGCAAACATA
Found at i:823937 original size:36 final size:36
Alignment explanation
Indices: 823884--824540 Score: 828
Period size: 36 Copynumber: 18.2 Consensus size: 36
823874 GTAAATAATT
* * * *
823884 ATAGACACTACAAACAAAATAGACAGTGCAGACATA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * * *
823920 ACAGACACTGCAGACAAAATAGACACTGCAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
823956 ATAGACACTGCAAACACAATAAACACTGCAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * *
823992 ATAGACACTACATACACAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
824028 ATAGACACTACATACACAATAGACACTGTAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
** * *
824064 ATAGACACTGTAAACACAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
824100 ATAGACACTACATACACAATAGACACTGCAAATACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
**
824136 ATAGACACTGTAAACACAATAGACACTGCAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * * * *
824172 ATAAACACTGCAAACATAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * *
824208 ATAGACACTACATACACAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
824244 ATATACACTACAAACACAATAGACACTGTAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * * *
824280 ATAGACACTACATACACAATAGGCACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
824316 ATATACACTACAAACACAATAGACACTGTAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
** *
824352 ATAGACACTGTAAACACAATAGACACTGTAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
** * *
824388 ATAGACACTGTAAACACAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* *
824424 ATAGACACTACATACACAATAGACACTGCAAATACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
** *
824460 ATAGACACTGTAAACACAATAGACACTGTAAACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
* * *
824496 ATAGACACTACATACACAATAGACACTACATACACA
1 ATAGACACTACAAACACAATAGACACTGCAAACACA
824532 ATAGACACT
1 ATAGACACT
824541 GTAAACATGG
Statistics
Matches: 538, Mismatches: 83, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 538 1.00
ACGTcount: A:0.51, C:0.25, G:0.09, T:0.16
Consensus pattern (36 bp):
ATAGACACTACAAACACAATAGACACTGCAAACACA
Found at i:824016 original size:90 final size:90
Alignment explanation
Indices: 823884--824547 Score: 851
Period size: 90 Copynumber: 7.4 Consensus size: 90
823874 GTAAATAATT
* * * * * * * *
823884 ATAGACACTACAAACAAAATAGACAGTGCAGACATAACAGACACTGCAGACAAAATAGACACTGC
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
*
823949 AAACACAATAGACACTGCAAACACA
66 AAACACAATAGACACTACAAACACA
* * * * *
823974 ATAAACACTGCAAACACAATAGACACTACATACACAATAGACACTACATACACAATAGACACTAC
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
* **
824039 ATACACAATAGACACTGTAAACACA
66 AAACACAATAGACACTACAAACACA
** * *
824064 ATAGACACTGTAAACACAATAGACACTACATACACAATAGACACTACATACACAATAGACACTGC
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
* **
824129 AAATACAATAGACACTGTAAACACA
66 AAACACAATAGACACTACAAACACA
* * * *
824154 ATAGACACTGCAAACACAATAAACACTGCAAACATAATAGACACTACATACACAATAGACACTAC
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
* *
824219 ATACACAATAGACACTACATACACA
66 AAACACAATAGACACTACAAACACA
* * * *
824244 ATATACACTACAAACACAATAGACACTGTAAACACAATAGACACTACATACACAATAGGCACTAC
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
* *
824309 ATACACAATATACACTACAAACACA
66 AAACACAATAGACACTACAAACACA
** * ** * *
824334 ATAGACACTGTAAACACAATAGACACTGTAAACACAATAGACACTGTAAACACAATAGACACTGT
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
*
824399 AAACACAATAGACACTACATACACA
66 AAACACAATAGACACTACAAACACA
* * ** * *
824424 ATAGACACTACATACACAATAGACACTGCAAATACAATAGACACTGTAAACACAATAGACACTGT
1 ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
*
824489 AAACACAATAGACACTACATACACA
66 AAACACAATAGACACTACAAACACA
* *
824514 ATAGACACTACATACACAATAGACACTGTAAACA
1 ATAGACACTACAAACACAATAGACACTGCAAACA
824548 TGGCCCATTC
Statistics
Matches: 517, Mismatches: 57, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 517 1.00
ACGTcount: A:0.51, C:0.25, G:0.09, T:0.16
Consensus pattern (90 bp):
ATAGACACTACAAACACAATAGACACTGCAAACACAATAGACACTACATACACAATAGACACTGC
AAACACAATAGACACTACAAACACA
Found at i:825223 original size:25 final size:25
Alignment explanation
Indices: 825189--825761 Score: 722
Period size: 25 Copynumber: 22.9 Consensus size: 25
825179 CAATGCCACA
* * *
825189 ATGCCATACCTTGGAGGGTGAGGCG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825214 ATGCTATACCTGGGAGGGTGAGGCG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825239 ATACTATACCTGGGAGGGTGAGG-G
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825263 AGTGCTATACCTGGGAGGGTGAGGAG
1 A-TGCTATACCTGGGAGGGTGAGGTG
* *
825289 ATGCTCTATCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825314 ATGCTATATCTGGGAGGGTGAGG-G
1 ATGCTATACCTGGGAGGGTGAGGTG
* * * *
825338 AATGCTATCCCTGGGAAGGCGAGTTG
1 -ATGCTATACCTGGGAGGGTGAGGTG
* *
825364 ATGCTA-ATCCTGGGAAGGCGAGGTG
1 ATGCTATA-CCTGGGAGGGTGAGGTG
825389 ATGCTATACCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
* *
825414 ATGCTCTATCTGGGAGGGTGAGG-G
1 ATGCTATACCTGGGAGGGTGAGGTG
* * *
825438 AATGCTATCCCTGGGAAGGCGAGGTG
1 -ATGCTATACCTGGGAGGGTGAGGTG
825464 ATGCTATACCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825489 ATGCTATACCTGGGAGGGTGAGGGG
1 ATGCTATACCTGGGAGGGTGAGGTG
* * * *
825514 GTGCTATCCCTGGGAAGGCGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
825539 ATGCTATACCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
* * *
825564 ATGCTCTATCTGGGAGGGTGAGGGG
1 ATGCTATACCTGGGAGGGTGAGGTG
* *
825589 GTGCTTTACCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825614 ATGCTATATCTGGGAGGGTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
* *
825639 ATGCTATACCTGGGAGGTTGAGGCG
1 ATGCTATACCTGGGAGGGTGAGGTG
* * *
825664 ATACTATATCTGGGAGGTTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825689 ATGCTATACCTGGGAGGTTGAGGTG
1 ATGCTATACCTGGGAGGGTGAGGTG
*
825714 ATGCTATACCTGGGAGGGTGAGGGG
1 ATGCTATACCTGGGAGGGTGAGGTG
* *
825739 GTGCTTTACCTGGGAGGGTGAGG
1 ATGCTATACCTGGGAGGGTGAGG
825762 CTGCCATCCA
Statistics
Matches: 481, Mismatches: 59, Indels: 16
0.87 0.11 0.03
Matches are distributed among these distances:
24 4 0.01
25 472 0.98
26 5 0.01
ACGTcount: A:0.20, C:0.13, G:0.43, T:0.24
Consensus pattern (25 bp):
ATGCTATACCTGGGAGGGTGAGGTG
Found at i:827213 original size:53 final size:53
Alignment explanation
Indices: 827131--828060 Score: 1518
Period size: 53 Copynumber: 17.5 Consensus size: 53
827121 ACTTACAATA
* *
827131 TACTGACTTGTACCATTAGTGGTAAGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
827184 TACTGACATGTACCACTAGTGGTATGAGAAATGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
**
827237 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGACATTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827290 TACTGACCTTTACCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
827343 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
827396 TACTGACCTGTACCATTTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCA-TTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
**
827450 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGACATTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827503 TACTGACCTTTACCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
827556 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
827609 TACTGACCTGTACCATTTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCA-TTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827663 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAAATATCCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827716 TACTGATCTGTACCATTAGTGGTAGGAAAAGTGTCTGAAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
827769 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
827822 TACTGACCTTTACCATTAGTGGTAGAAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
827875 TACTGACCTGTACCATGAGTGGTAGGAAAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827928 TACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
827981 TACTGACATGTACCACTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
828034 TACTGACATGCACCATTAGTGGTAGGA
1 TACTGACCTGTACCATTAGTGGTAGGA
828061 CTGGAGTAGG
Statistics
Matches: 815, Mismatches: 60, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
53 711 0.87
54 104 0.13
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.32
Consensus pattern (53 bp):
TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
Found at i:827325 original size:106 final size:106
Alignment explanation
Indices: 827131--828975 Score: 2358
Period size: 106 Copynumber: 16.8 Consensus size: 106
827121 ACTTACAATA
* * *
827131 TACTGACTTGTACCATTAGTGGTAAGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
827196 CCACTAGTGGTATGAGAAATGTCTGTAGGAGATGTTCTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
** *
827237 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGACATTCTGTGTACTGACCTTTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
827302 CCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
827343 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
827408 CCATTTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
66 CCA-TTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
** *
827450 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGACATTCTGTGTACTGACCTTTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
827515 CCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
827556 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
827621 CCATTTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
66 CCA-TTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
827663 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAAATATCCTGTGTACTGATCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
827728 CCATTAGTGGTAGGAAAAGTGTCTGAAGGAGATGTTCTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
827769 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTTTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
*
827834 CCATTAGTGGTAGAAGAAGTGTCTGTAGGAGATGTTCTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827875 TACTGACCTGTACCATGAGTGGTAGGAAAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCCGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
827940 CCATTAGTGGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
827981 TACTGACATGTACCACTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
828046 CCATTAGTGGTAGGACTGGAGTAGGAGAAGTATCTGTAGTAGATGTTTTGTG
66 CC---A-T--TA-G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
828098 TACTGACATGTACCATTAGTGGTAGGAGTAGAGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
1 TACTGACCTGTACC---A-T--T---AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* * * * *
828163 ACTGACATGCACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTATG
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
828215 TACTGACATGCACCATTAGTGGTAGGACTGGAGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTGT
1 TACTGACCTGTACC---A-T--TA-G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* *
828280 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTGTG
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
828332 TACTGACATGCACCATTAGTGGTAGGACTGGAGTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGT
1 TACTGACCTGTACC---A-T--TA-G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* *
828397 ACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGTAGATGTTCTGTG
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
828449 TACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
828514 CCATTAGTGGTAGGAGAAGTGTCTGAAGTAGATGTTTTGTG
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
828555 TACTGACTTGTACCATTAGTGGTAGGAGTAGAGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
1 TACTGACCTGTACC---A-T--T---AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* * * * *
828620 ACTGACTTGTACCATTAGTGTTAAGAGAAGTGTCTGTAGGAGATATCCTGTG
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
828672 TACTGACATGTACCATTAGTGGTAGGAGTAGAGTAGGAGAAGTGTCAGTAGGAGATGTCCTGTGT
1 TACTGACCTGTACC---A-T--T---AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* *
828737 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTGTG
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * * * *
828789 TACTTACTTGTACCATTAGTGGTAGGAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACTTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
*
828854 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
828895 TAATGACCTGTACCATTAATGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
828960 CCATTAGTGGTAGGAG
66 CCATTAGTGGTAGGAG
828976 CAGAGTAGGA
Statistics
Matches: 1584, Mismatches: 117, Indels: 76
0.89 0.07 0.04
Matches are distributed among these distances:
106 797 0.50
107 201 0.13
108 4 0.00
109 2 0.00
110 3 0.00
111 3 0.00
112 3 0.00
113 3 0.00
114 3 0.00
115 5 0.00
116 2 0.00
117 499 0.32
118 1 0.00
119 1 0.00
120 1 0.00
121 1 0.00
122 2 0.00
123 1 0.00
124 1 0.00
125 1 0.00
126 3 0.00
127 1 0.00
128 46 0.03
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (106 bp):
TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
Found at i:827874 original size:159 final size:159
Alignment explanation
Indices: 827131--828975 Score: 2358
Period size: 159 Copynumber: 11.2 Consensus size: 159
827121 ACTTACAATA
* * *
827131 TACTGACTTGTACCATTAGTGGTAAGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
827196 CCACTAGTGGTATGAGAAATGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
**
827261 GGAGAAGTGTCTGTAGGAGACATTCTGTG
131 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * *
827290 TACTGACCTTTACCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
*
827355 CCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTTAGTGGT
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCA-TTAGTGGT
827420 AGGAGAAGTGTCTGTAGGAGATGTTCTGTG
130 AGGAGAAGTGTCTGTAGGAGATGTTCTGTG
** *
827450 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGACATTCTGTGTACTGACCTTTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
827515 CCATTAGTGGTAGGAAAAGTGTCTGTAGGAGACGTTCTGTGTACTGACCTGTACCATAAGTGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
827580 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
131 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
827609 TACTGACCTGTACCATTTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGT
1 TACTGACCTGTACCA-TTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGT
* * * *
827674 ACCATTAGTGGTAGGAGAAGTGTCTGTAGGAAATATCCTGTGTACTGATCTGTACCATTAGTGGT
65 ACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGT
* *
827739 AGGAAAAGTGTCTGAAGGAGATGTTCTGTG
130 AGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* *
827769 TACTGACCTGTACCATAAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTTTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
827834 CCATTAGTGGTAGAAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATGAGTGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
*
827899 GGAAAAGTGTCTGTAGGAGATGTTCTGTG
131 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
827928 TACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTGTACTGACATGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
827993 CCACTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACC---A-T--TA
* * *
828058 GGACTGGAGTAGGAGAAGTATCTGTAGTAGATGTTTTGTG
125 -G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
828098 TACTGACATGTACCATTAGTGGTAGGAGTAGAGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
1 TACTGACCTGTACC---A-T--T---AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGT
* * * * * * *
828163 ACTGACATGCACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCAC
55 ACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTAC
* *
828228 CATTAGTGGTAGGACTGGAGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTG
120 C---A-T--TA-G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * *
828279 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGCA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
828344 CCATTAGTGGTAGGACTGGAGTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTAC
66 CC---A-T--TA-G--T-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTAC
*
828409 CATTAGTGGTAGGAGAAGTGTCTGTAGTAGATGTTCTGTG
120 CATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
*
828449 TACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * * *
828514 CCATTAGTGGTAGGAGAAGTGTCTGAAGTAGATGTTTTGTGTACTGACTTGTACCATTAGTGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACC---A-T--T-
828579 GGAGTAGAGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
124 --AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * * * *
828619 TACTGACTTGTACCATTAGTGTTAAGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* *
828684 CCATTAGTGGTAGGAGTAGAGTAGGAGAAGTGTCAGTAGGAGATGTCCTGTGTACTGACCTGTAC
66 CC---A-T--T---AGT-G-GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTAC
* *
828749 CATTAGTGGTAGGAGAAGTGTCTGTAGGAGATATCCTGTG
120 CATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTG
* * * * * *
828789 TACTTACTTGTACCATTAGTGGTAGGAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACTTGTA
1 TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
* * *
828854 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTATAATGACCTGTACCATTAATGGTA
66 CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
828919 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
131 GGAGAAGTGTCTGTAGGAGATGTTCTGTG
828948 TACTGACCTGTACCATTAGTGGTAGGAG
1 TACTGACCTGTACCATTAGTGGTAGGAG
828976 CAGAGTAGGA
Statistics
Matches: 1513, Mismatches: 116, Indels: 114
0.87 0.07 0.07
Matches are distributed among these distances:
159 554 0.37
160 299 0.20
161 4 0.00
162 2 0.00
163 3 0.00
164 3 0.00
165 2 0.00
166 3 0.00
167 2 0.00
168 4 0.00
169 2 0.00
170 360 0.24
171 3 0.00
172 7 0.00
173 3 0.00
174 4 0.00
175 4 0.00
176 4 0.00
177 4 0.00
178 3 0.00
179 7 0.00
180 3 0.00
181 233 0.15
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (159 bp):
TACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTA
CCATTAGTGGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTA
GGAGAAGTGTCTGTAGGAGATGTTCTGTG
Found at i:828187 original size:117 final size:117
Alignment explanation
Indices: 827896--828922 Score: 1080
Period size: 117 Copynumber: 9.0 Consensus size: 117
827886 ACCATGAGTG
* *
827896 GTAGGAAAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCCGTACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* * ** * * *
827961 TCTGTAGTAGATGTTTTGTGTACTGACATGTACCACTAGTGGTAGGAGAAGTGTCT
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTA--G--A
* * * * * * * * ** *
828017 GTAGGAGATGT-TCTGT-GTA-CTG-AC-ATGCACCATTA-GTGGTAGGACT-G-GAGTAGGAGA
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTA-C-TGACCT-GTACCATTAGTG-GTAGGAGA
* * * **
828074 AGTATCTGTAGTAGATGTTTTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
62 AGTGTCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* *
828130 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* * * *
828195 TCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGACTGGA
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* *
828247 GTAGGAGAAGTGTCTGTAGTAGATGTTTTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* * *
828312 TCTGTAGGAGATATCCTGTGTACTGACATGCACCATTAGTGGTAGGACTGGA
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* *
828364 GTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* * * **
828429 TCTGTAGTAGATGTTCTGTGTACTGACCCGTACC---A-T--T---AGT-G-
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
*
828470 GTAGGAGAAGTGTCTGTAGGAGATGT-TCTGT--GTACTGACCTGTACCATTAGTGGTAGGAGAA
1 GTAGGAGAAGTGTCTGTAGGAGA--TGT-TCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAA
* * * ** *
828532 GTGTCTGAAGTAGATGTTTTGTGTACTGACTTGTACCATTAGTGGTAGGAGTAGA
63 GTGTCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* * *
828587 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACTTGTACCATTAGTGTTAAGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
828652 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* *
828704 GTAGGAGAAGTGTCAGTAGGAGATGTCCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* *
828769 TCTGTAGGAGATATCCTGTGTACTTACTTGTACC---A-T--T---AGT-G-
66 TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
* ** * *
828810 GTAGGAGAAGTGTCAGTAGGAGATATCCTGTG--TACTGACTTGTACCATTAGTGGTAGGAGAAG
1 GTAGGAGAAGTGTCTGTAGGAG--ATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAG
* * * * * *
828873 TGTCTGTAGGAGATGTTCTGTATAATGACCTGTACCATTAATGGTAGGAG
64 TGTCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAG
828923 AAGTGTCTGT
Statistics
Matches: 779, Mismatches: 87, Indels: 86
0.82 0.09 0.09
Matches are distributed among these distances:
106 167 0.21
107 3 0.00
108 12 0.02
109 2 0.00
110 2 0.00
111 2 0.00
112 2 0.00
113 12 0.02
114 7 0.01
115 11 0.01
116 14 0.02
117 516 0.66
118 13 0.02
119 2 0.00
120 5 0.01
121 9 0.01
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (117 bp):
GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
TCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
Found at i:828189 original size:64 final size:64
Alignment explanation
Indices: 828002--828189 Score: 322
Period size: 64 Copynumber: 2.9 Consensus size: 64
827992 ACCACTAGTG
* *
828002 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGACTGGA
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAGTAGA
* * * *
828066 GTAGGAGAAGTATCTGTAGTAGATGTTTTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGA
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAGTAGA
828130 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAG
828190 AAGTGTCTGT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 114 1.00
ACGTcount: A:0.26, C:0.11, G:0.34, T:0.30
Consensus pattern (64 bp):
GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTGGTAGGAGTAGA
Found at i:828193 original size:53 final size:53
Alignment explanation
Indices: 828130--828975 Score: 639
Period size: 53 Copynumber: 15.1 Consensus size: 53
828120 TAGGAGTAGA
* * *
828130 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACATGCACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
828183 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGACTGG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACC---A-T--TA-G--T-G
* * ** * * *
828246 AGTAGGAGAAGTGTCTGTAGTAGATGTTTTGTGTACTGACCTGTACCATTAGTG
1 -GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
*
828300 GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGCACCATTAGTGGTAGGACTGG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACC---A-T--TA-G--T-G
* * * * ** *
828363 AGTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTG
1 -GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * * ** *
828417 GTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * * *
828470 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * ** * * *
828523 GTAGGAGAAGTGTCTGAAGTAGATGTTTTGTGTACTGACTTGTACCATTAGTGGTAGGAGTAG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACC---A-T--T---AGT-G
* * * * *
828586 AGTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACTTGTACCATTAGTG
1 -GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * *
828640 TTAAGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACC---A-T--T---AGT-G
* * * * *
828703 AGTAGGAGAAGTGTCAGTAGGAGATGTCCTGTGTACTGACCTGTACCATTAGTG
1 -GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * *
828757 GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTTACTTGTACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * *
828810 GTAGGAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACTTGTACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * * * * * *
828863 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTATAATGACCTGTACCATTAATG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
* * * * *
828916 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
828969 GTAGGAG
1 GTAGGAG
828976 CAGAGTAGGA
Statistics
Matches: 692, Mismatches: 57, Indels: 88
0.83 0.07 0.11
Matches are distributed among these distances:
53 473 0.68
54 4 0.01
55 8 0.01
56 4 0.01
57 6 0.01
58 6 0.01
59 6 0.01
60 6 0.01
61 4 0.01
62 8 0.01
63 4 0.01
64 163 0.24
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (53 bp):
GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTG
Found at i:828251 original size:64 final size:64
Alignment explanation
Indices: 828183--828305 Score: 183
Period size: 64 Copynumber: 1.9 Consensus size: 64
828173 ACCATTAGTG
828183 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGACTGGA
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGACTGGA
* * ** * * *
828247 GTAGGAGAAGTGTCTGTAGTAGATGTTTTGTGTACTGACCTGTACCATTAGTGGTAGGA
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGA
828306 GAAGTGTCTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (64 bp):
GTAGGAGAAGTGTCTGTAGGAGATATCCTATGTACTGACATGCACCATTAGTGGTAGGACTGGA
Found at i:828368 original size:64 final size:64
Alignment explanation
Indices: 828300--828422 Score: 192
Period size: 64 Copynumber: 1.9 Consensus size: 64
828290 ACCATTAGTG
*
828300 GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGCACCATTAGTGGTAGGACTGGA
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACACGCACCATTAGTGGTAGGACTGGA
* * * * *
828364 GTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTGGTAGGA
1 GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACACGCACCATTAGTGGTAGGA
828423 GAAGTGTCTG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (64 bp):
GTAGGAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACACGCACCATTAGTGGTAGGACTGGA
Found at i:828423 original size:170 final size:159
Alignment explanation
Indices: 828364--828975 Score: 801
Period size: 170 Copynumber: 3.7 Consensus size: 159
828354 TAGGACTGGA
* *
828364 GTAGGAGAAGTGTCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
* *
828429 TCTGTAGTAGATGTTCTGTGTACTGACCCGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGAT
66 TCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGAT
* * *
828494 GTTCTGTGTACTGACCTGTACCATTAGTG
131 ATCCTGTGTACTGACATGTACCATTAGTG
* * * *
828523 GTAGGAGAAGTGTCTGAAGTAGATGTTTTGTGTACTGACTTGTACCATTAGTGGTAGGAGTAGAG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACC---A-T--T---AGT-G-G
* * *
828588 TAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACTTGTACCATTAGTGTTAAGAGAAGTGT
55 TAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTGT
828653 CTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAG
120 CTGTAGGAGATATCCTGTGTACTGACATGTACC---A-T--T---AGT-G
* *
828703 AGTAGGAGAAGTGTCAGTAGGAGATGTCCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGT
1 -GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGT
* * * * *
828768 GTCTGTAGGAGATATCCTGTGTACTTACTTGTACCATTAGTGGTAGGAGAAGTGTCAGTAGGAGA
65 GTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGA
*
828833 TATCCTGTGTACTGACTTGTACCATTAGTG
130 TATCCTGTGTACTGACATGTACCATTAGTG
* * *
828863 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTATAATGACCTGTACCATTAATGGTAGGAGAAGTG
1 GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
828928 TCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAG
66 TCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAG
828976 CAGAGTAGGA
Statistics
Matches: 397, Mismatches: 34, Indels: 44
0.84 0.07 0.09
Matches are distributed among these distances:
159 146 0.37
160 1 0.00
161 3 0.01
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 3 0.01
169 1 0.00
170 183 0.46
171 1 0.00
172 3 0.01
173 1 0.00
174 1 0.00
175 1 0.00
176 1 0.00
177 1 0.00
178 1 0.00
179 3 0.01
180 1 0.00
181 40 0.10
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (159 bp):
GTAGGAGAAGTGTCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTG
TCTGTAGGAGATGTTCTGTGTACTGACCTGTACCATTAGTGGTAGGAGAAGTGTCTGTAGGAGAT
ATCCTGTGTACTGACATGTACCATTAGTG
Found at i:828723 original size:64 final size:64
Alignment explanation
Indices: 828644--828763 Score: 213
Period size: 64 Copynumber: 1.9 Consensus size: 64
828634 TTAGTGTTAA
*
828644 GAGAAGTGTCTGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGAGTAG
1 GAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGAGTAG
* *
828708 GAGAAGTGTCAGTAGGAGATGTCCTGTGTACTGACCTGTACCATTAGTGGTAGGAG
1 GAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAG
828764 AAGTGTCTGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.28
Consensus pattern (64 bp):
GAGAAGTGTCAGTAGGAGATATCCTGTGTACTGACATGTACCATTAGTGGTAGGAGTAGAGTAG
Found at i:830587 original size:55 final size:55
Alignment explanation
Indices: 830496--830996 Score: 851
Period size: 55 Copynumber: 9.1 Consensus size: 55
830486 CATTTATTTC
** * * * *
830496 TTGAATCTGAACCCTTCACTTGTTCTACTATATCTGTCGGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830551 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830606 TTGAATCTGAACCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830661 TTGAATCTGACCCCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCC-CCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830717 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830772 TTGAATCTGACCCCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCC-CCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830828 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
830883 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
* *
830938 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGT-AGGTA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
830992 TTGAA
1 TTGAA
830997 ACATCAGAAA
Statistics
Matches: 424, Mismatches: 20, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
54 9 0.02
55 308 0.73
56 107 0.25
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (55 bp):
TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
Found at i:830730 original size:111 final size:110
Alignment explanation
Indices: 830496--830996 Score: 860
Period size: 111 Copynumber: 4.5 Consensus size: 110
830486 CATTTATTTC
** * * * * *
830496 TTGAATCTGAACCCTTCACTTGTTCTACTATATCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
*
830561 ACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATA
66 ACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
* *
830606 TTGAATCTGAACCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
*
830671 CCCCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
66 ACCCC-CCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
830717 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
*
830782 CCCCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
66 ACCCC-CCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
830828 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
830893 ACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
66 ACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830938 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGT-AGGTATTGAA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAA
830997 ACATCAGAAA
Statistics
Matches: 379, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
109 9 0.02
110 153 0.40
111 217 0.57
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (110 bp):
TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
ACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
Found at i:830849 original size:166 final size:165
Alignment explanation
Indices: 830496--830996 Score: 853
Period size: 166 Copynumber: 3.0 Consensus size: 165
830486 CATTTATTTC
** * * * *
830496 TTGAATCTGAACCCTTCACTTGTTCTACTATATCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
*
830561 ACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGAACCCTCCAGT
66 ACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGACCCCTCCAGT
830626 GGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
131 GGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830661 TTGAATCTGACCCCCTCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTG
1 TTGAATCTGAACCCC-CCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTG
830726 AACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGACCCCCTCCA
65 AACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA-CCCCTCCA
830791 GTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
129 GTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
*
830828 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGA
1 TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
*
830893 ACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTGAACCCC-CCAG
66 ACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTG-ACCCCTCCAG
* *
830957 TGGTTCTACTGTGTCTGTCAGTTTGTTGGT-AGGTA
130 TGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
830992 TTGAA
1 TTGAA
830997 ACATCAGAAA
Statistics
Matches: 320, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
164 9 0.03
165 46 0.14
166 206 0.64
167 59 0.18
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (165 bp):
TTGAATCTGAACCCCCCAGTGGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATATTGAATCTGA
ACCCCCCAGTGGTTCTACTGTGTCTGTCAGTTTGTTGGTAAGATATTGAATCTGACCCCTCCAGT
GGTTCTACTGTGTCTGTCGGTTTGTTGGTAAGATA
Found at i:831515 original size:43 final size:43
Alignment explanation
Indices: 831463--831892 Score: 675
Period size: 43 Copynumber: 10.0 Consensus size: 43
831453 ACATGTACCC
831463 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
* * *
831506 CCATGTCTACCTTTAACCTGGTCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
* * *
831549 CTAGTTCTACCTTTGAGCTGGCCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
*
831592 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGCATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
*
831635 CTATTTCTACCTTTGAGCTGGTCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
* * *
831678 CTATTTCTACCTTTAATCTGGGCCCTGTATTTCTTTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
* *
831721 CTATTTCTACCTTTGAGCTGGCCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
* *
831764 CTATGTCTACCTTTAAGCTGGCCCCTGTATTTCT-TATGTA-CA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCT-TGTATCA
* *
831806 TTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTTTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
*
831849 CTATTTCTACCTTTGAGCTGGTCCCTGTATTTCTCTTGTATCA
1 CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
831892 C
1 C
831893 AGACAAAAGT
Statistics
Matches: 353, Mismatches: 31, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
42 38 0.11
43 315 0.89
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (43 bp):
CTATTTCTACCTTTAAGCTGGTCCCTGTATTTCTCTTGTATCA
Found at i:833079 original size:18 final size:18
Alignment explanation
Indices: 833047--833091 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
833037 GCTCAGGGAT
* *
833047 ACAGGTGAGATAGGTAAA
1 ACAGGTGGGACAGGTAAA
* *
833065 ACAGGTGGGACAGGTGAG
1 ACAGGTGGGACAGGTAAA
833083 ACAGGTGGG
1 ACAGGTGGG
833092 CTAGTTCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.44, T:0.13
Consensus pattern (18 bp):
ACAGGTGGGACAGGTAAA
Found at i:835889 original size:55 final size:55
Alignment explanation
Indices: 835798--836459 Score: 994
Period size: 55 Copynumber: 12.1 Consensus size: 55
835788 AAGTCATGTA
* **
835798 ACCTACACCCT-CCAAGCAGCCT--ACACACAGTTTGCTGGGTCATTATTGTGGAT
1 ACCTACATCCTCCCAA-CAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* * * *
835851 ACTTACATCCTCCCAACAGCCTACAGACATAGTTTGCTGAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
*
835906 ACCTACATCCTCCCAACAGTCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
*
835961 ACCTACATCCTCCCAACAGTCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* * * *
836016 ACCTACATCCTCCCAACAGTCTACAGACACAGTTGGCTTAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
*** *
836071 ACCTACATCCTCCCAACAGCCTA-TGTCACAGTTTGCTAAGTCATCATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* * * *
836125 ACTTACATCCTCCCAACAGCCTACAGACATAGTTTGCTGAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* *
836180 ACCTACATCCTCCCAACAGCCTACAGACACAGTTTGCTTAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
836235 ACCTACATCCTCCCAACAGCCT--ACACACAGTTTGCTAAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* *
836288 ACTTACATCCTCCCAACAGCCTACACACACAGTTTGCTGAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
* *
836343 ACCTACATCCTCCCAACAGCCTACACACACATAGTTTGCTGAGTCATCATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACAC--AGTTTGCTAAGTCATTATTGTGGAT
**
836400 ACCTACATCCTCCCAACAGCCTACACACACAGTTTATTAAGTCATTATTGTGGAT
1 ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
836455 ACCTA
1 ACCTA
836460 GGGGTAATGG
Statistics
Matches: 563, Mismatches: 38, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
53 65 0.12
54 52 0.09
55 392 0.70
57 54 0.10
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (55 bp):
ACCTACATCCTCCCAACAGCCTACACACACAGTTTGCTAAGTCATTATTGTGGAT
Found at i:845726 original size:2 final size:2
Alignment explanation
Indices: 845719--845754 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
845709 GAATACGGAC
*
845719 AG AG AG AG AG AG AG AG GG AG AG AG AG AG AG -G AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
845755 AATTTTGACG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:846748 original size:32 final size:29
Alignment explanation
Indices: 846637--847018 Score: 204
Period size: 29 Copynumber: 13.0 Consensus size: 29
846627 AGTTATAAAG
* *
846637 AATGTGTACTGGCG-TATATTAGTGTAAT
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * * *
846665 -AT-TTTACAGGTGTTGTATAATTGTAGT
1 AATGTGTACTGGTGTTATATTATTGTAAT
*
846692 AACGTGTACTGGTGTTATATTATTGTTAAT
1 AATGTGTACTGGTGTTATATTATTG-TAAT
*
846722 AATGTGTACTGGTTTAATATATTATTGTAATAATT
1 AATGTGTACTGGTGT--TATATTATTG---TAA-T
* * *
846757 AATATGTACCGGTGTTACATTATTGT--T
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * *
846784 -ATGTTTACTGGTGTTATATAACTGTTAT
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * *
846812 AATGTTTACTGGTGTTATATAACTGTTAT
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * * *
846841 TATGTGCACTGGTGTTATATAACTGTTAT
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * *
846870 AATGTGCACTTGTGTTATATAACTGTTAA-
1 AATGTGTACTGGTGTTATATTATTG-TAAT
* * *
846899 AATGCGTACAGGTGTTACTATTATAAATTGTTAT
1 AATGTGTACTGGTGTTA-TA-T-T--ATTGTAAT
* * *
846933 AATATTTACTGGTGTTATATTATTGAAAT
1 AATGTGTACTGGTGTTATATTATTGTAAT
* * * * *
846962 AATGTTTACTTGCGTTATTTTGTTGCT-AT
1 AATGTGTACTGGTGTTATATTATTG-TAAT
* *
846991 AGTGTGTACTGGTGCTATATTATTGTAA
1 AATGTGTACTGGTGTTATATTATTGTAA
847019 AAATAGGGAA
Statistics
Matches: 275, Mismatches: 58, Indels: 41
0.74 0.16 0.11
Matches are distributed among these distances:
26 26 0.09
27 13 0.05
28 3 0.01
29 154 0.56
30 21 0.08
31 2 0.01
32 11 0.04
33 13 0.05
34 19 0.07
35 13 0.05
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (29 bp):
AATGTGTACTGGTGTTATATTATTGTAAT
Found at i:849276 original size:47 final size:47
Alignment explanation
Indices: 849202--849507 Score: 477
Period size: 47 Copynumber: 6.5 Consensus size: 47
849192 CTCATAATTT
**
849202 GTGATAAGTAAAGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
*
849249 GTGATAAGTATTGCAGGGTGGTTTATTGTGATACGGGGAGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGG-GGATAGTCC
* * *
849297 GTGATAAGTGTAGCTGGGTGGTATATTGTGATACGGGGGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
* *
849344 GTGATAAGTATTGCAGGGTGGTATATTGTAATACGGGAGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
*
849391 GTGATAGGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
* *
849438 GTGATAAGTATTGCAGGGTGGTATATTGTAATACGGGAGGATAGTCC
1 GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
* * *
849485 ATGATAGGTATAGCAGGGTGGTA
1 GTGATAAGTATTGCAGGGTGGTA
849508 CTGTATAGGA
Statistics
Matches: 237, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 194 0.82
48 43 0.18
ACGTcount: A:0.25, C:0.08, G:0.38, T:0.29
Consensus pattern (47 bp):
GTGATAAGTATTGCAGGGTGGTATATTGTGATACGGGGGGATAGTCC
Found at i:851260 original size:2 final size:2
Alignment explanation
Indices: 851255--851312 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
851245 CATATATCGA
851255 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
851297 AG -G AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG A
851313 NNNNNNNNNN
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:851348 original size:2 final size:2
Alignment explanation
Indices: 851341--851419 Score: 115
Period size: 2 Copynumber: 40.0 Consensus size: 2
851331 NNNNNNNNNN
* * * *
851341 GA GA GA GA GA GA GT GA GT GA GA CA GA GA GC G- GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
851382 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
851420 TATTCTTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
1 1 0.01
2 68 0.99
ACGTcount: A:0.46, C:0.03, G:0.49, T:0.03
Consensus pattern (2 bp):
GA
Found at i:855506 original size:4 final size:4
Alignment explanation
Indices: 855497--855555 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
855487 ATTTTTAATA
855497 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
855545 AAAT AAAT AAA
1 AAAT AAAT AAA
855556 AGGTAATTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:862554 original size:2 final size:2
Alignment explanation
Indices: 862547--862583 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
862537 TCAAATTCCC
862547 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
862584 CCTGGTGGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:866791 original size:21 final size:21
Alignment explanation
Indices: 866766--867079 Score: 83
Period size: 21 Copynumber: 14.6 Consensus size: 21
866756 CTACGTGTAT
* * *
866766 CCTAGTACAATACTTAATGCA
1 CCTAGTACAACACTAAATGAA
*
866787 TCTAGTACAACACTAAATGAA
1 CCTAGTACAACACTAAATGAA
** *
866808 CCTAGTACAACACTACGTGTA
1 CCTAGTACAACACTAAATGAA
* * * * **
866829 TCTGGAACAACAATTTATGTAA
1 CCTAGTACAACACTAAATG-AA
* *
866851 -CTAGTACAACATTAAATTTAA
1 CCTAGTACAACACTAAA-TGAA
* ** **
866872 -TTAGTACAACACTTCATTTA
1 CCTAGTACAACACTAAATGAA
* * *
866892 CTTAGAACAACACTACATATGCATGTG
1 CCTAGTACAACACTA-A-ATG-A---A
** *
866919 CCTAGTACAACACTGCATGTA
1 CCTAGTACAACACTAAATGAA
* * *
866940 CATAGTACAACACTATATGTA
1 CCTAGTACAACACTAAATGAA
* * *
866961 CCTAGTACAACAATATATGCA
1 CCTAGTACAACACTAAATGAA
* * *
866982 GCTAGTACAACACTACACGTATA
1 CCTAGTACAACACTAAATG-A-A
* * * **
867005 CCTTGCACAACACTACATGTT
1 CCTAGTACAACACTAAATGAA
* * *
867026 CCTAGAACAACACTACATGCA
1 CCTAGTACAACACTAAATGAA
* * * *
867047 TCTAGAACAACACTACATGTA
1 CCTAGTACAACACTAAATGAA
**
867068 TATAGTACAACA
1 CCTAGTACAACA
867080 ATACATGTAT
Statistics
Matches: 218, Mismatches: 64, Indels: 22
0.72 0.21 0.07
Matches are distributed among these distances:
20 3 0.01
21 180 0.83
22 2 0.01
23 18 0.08
25 3 0.01
27 12 0.06
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (21 bp):
CCTAGTACAACACTAAATGAA
Found at i:866877 original size:63 final size:64
Alignment explanation
Indices: 866750--867089 Score: 181
Period size: 63 Copynumber: 5.2 Consensus size: 64
866740 TGTACGAACA
* * * *
866750 ACAACACTACGTGTATCCTAGTACAATACTTAATGCATCTAGTACAACACTAAATGAACCTAGT
1 ACAACACTACGTGTATCCTAGAACAACAATTAATGCAACTAGTACAACACTAAATGAACCTAGT
* * * * * *
866814 ACAACACTACGTGTAT-CTGGAACAACAATTTATGTAACTAGTACAACATTAAATTTAA-TTAGT
1 ACAACACTACGTGTATCCTAGAACAACAATTAATGCAACTAGTACAACACTAAA-TGAACCTAGT
* * * * * * * ** *
866877 ACAACACTTCATTTA-CTTAGAACAACACTACATATGCATGTGCCTAGTACAACACTGCATGTAC
1 ACAACACTACGTGTATCCTAGAACAACAAT-TA-ATGCA----ACTAGTACAACACTAAATGAAC
*
866941 ATAGT
60 CTAGT
** * * * * *
866946 ACAACACTATATGTA-CCTAGTACAACAA-TATATGCAGCTAGTACAACACTACACGTATACCTT
1 ACAACACTACGTGTATCCTAGAACAACAATTA-ATGCAACTAGTACAACACTAAATG-A-ACCTA
*
867009 GC
63 GT
* * * * * * **
867011 ACAACACTACATGT-TCCTAGAACAAC-ACTACATGCATCTAGAACAACACTACATGTATATAGT
1 ACAACACTACGTGTATCCTAGAACAACAATTA-ATGCAACTAGTACAACACTAAATGAACCTAGT
* *
867074 ACAACAATACATGTAT
1 ACAACACTACGTGTAT
867090 ATACTAAGTA
Statistics
Matches: 210, Mismatches: 52, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
63 87 0.41
64 21 0.10
65 54 0.26
67 7 0.03
68 2 0.01
69 39 0.19
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.27
Consensus pattern (64 bp):
ACAACACTACGTGTATCCTAGAACAACAATTAATGCAACTAGTACAACACTAAATGAACCTAGT
Found at i:866971 original size:42 final size:42
Alignment explanation
Indices: 866750--867088 Score: 180
Period size: 42 Copynumber: 7.9 Consensus size: 42
866740 TGTACGAACA
* * * * *
866750 ACAACACTACGTGTATCCTAGTACAATACTTA-ATGCATCTAGT
1 ACAACACTACATGTA-CATAGTACAACAC-TACATGTACCTAGT
* * * * * * *
866793 ACAACACTAAATGAACCTAGTACAACACTACGTGTATCTGGA
1 ACAACACTACATGTACATAGTACAACACTACATGTACCTAGT
* ** * * * **
866835 ACAACAATTTATGTA-ACTAGTACAACATTAAATTTAATTAGT
1 ACAACACTACATGTACA-TAGTACAACACTACATGTACCTAGT
* * * * *
866877 ACAACACTTCATTTACTTAGAACAACACTACATATGCATGTGCCTAGT
1 ACAACACTACATGTACATAGTAC-A-AC-AC-TA--CATGTACCTAGT
* *
866925 ACAACACTGCATGTACATAGTACAACACTATATGTACCTAGT
1 ACAACACTACATGTACATAGTACAACACTACATGTACCTAGT
* * * * * *
866967 ACAACAATATATGCAGC-TAGTACAACACTACACGTATACCTTGC
1 ACAACACTACATGTA-CATAGTACAACACTACA--TGTACCTAGT
* * * * * *
867011 ACAACACTACATGTTCCTAGAACAACACTACATGCATCTAGA
1 ACAACACTACATGTACATAGTACAACACTACATGTACCTAGT
* *
867053 ACAACACTACATGTATATAGTACAACAATACATGTA
1 ACAACACTACATGTACATAGTACAACACTACATGTA
867089 TATACTAAGT
Statistics
Matches: 221, Mismatches: 62, Indels: 27
0.71 0.20 0.09
Matches are distributed among these distances:
41 2 0.01
42 134 0.61
43 15 0.07
44 36 0.16
45 3 0.01
46 4 0.02
47 1 0.00
48 26 0.12
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.27
Consensus pattern (42 bp):
ACAACACTACATGTACATAGTACAACACTACATGTACCTAGT
Found at i:867030 original size:65 final size:65
Alignment explanation
Indices: 866946--867069 Score: 176
Period size: 65 Copynumber: 1.9 Consensus size: 65
866936 TGTACATAGT
* * * *
866946 ACAACACTATATGTACCTAGTACAACAATATATGCAGCTAGTACAACACTACACGTATACCTTGC
1 ACAACACTACATGTACCTAGAACAACAATACATGCAGCTAGAACAACACTACACGTATACCTTGC
* * * *
867011 ACAACACTACATGTTCCTAGAACAACACTACATGCATCTAGAACAACACTACATGTATA
1 ACAACACTACATGTACCTAGAACAACAATACATGCAGCTAGAACAACACTACACGTATA
867070 TAGTACAACA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 51 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (65 bp):
ACAACACTACATGTACCTAGAACAACAATACATGCAGCTAGAACAACACTACACGTATACCTTGC
Found at i:867057 original size:86 final size:86
Alignment explanation
Indices: 866925--867090 Score: 197
Period size: 86 Copynumber: 1.9 Consensus size: 86
866915 TGTGCCTAGT
* * * * * * *
866925 ACAACACTGCATGTACATAGTACAACACTATATGTACCTAGTACAACAATATATGCAGCTAGTAC
1 ACAACACTACATGTACATAGAACAACACTACATGCACCTAGAACAACAATACATGCAGATAGTAC
*
866990 AACACTACACGTATACCTTGC
66 AACAATACACGTATACCTTGC
* * * * * *
867011 ACAACACTACATGTTCCTAGAACAACACTACATGCATCTAGAACAACACTACATGTATATAGTAC
1 ACAACACTACATGTACATAGAACAACACTACATGCACCTAGAACAACAATACATGCAGATAGTAC
*
867076 AACAATACATGTATA
66 AACAATACACGTATA
867091 TACTAAGTAG
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.24
Consensus pattern (86 bp):
ACAACACTACATGTACATAGAACAACACTACATGCACCTAGAACAACAATACATGCAGATAGTAC
AACAATACACGTATACCTTGC
Found at i:867084 original size:21 final size:21
Alignment explanation
Indices: 866921--867092 Score: 139
Period size: 21 Copynumber: 8.1 Consensus size: 21
866911 TGCATGTGCC
* *
866921 TAGTACAACACTGCATGTACA
1 TAGTACAACACTACATGTATA
* **
866942 TAGTACAACACTATATGTACC
1 TAGTACAACACTACATGTATA
* * * **
866963 TAGTACAACAATATATGCAGC
1 TAGTACAACACTACATGTATA
*
866984 TAGTACAACACTACACGTATA
1 TAGTACAACACTACATGTATA
* * *
867005 CCTTGCACAACACTACATGT-TCC
1 --TAGTACAACACTACATGTAT-A
* * *
867028 TAGAACAACACTACATGCATC
1 TAGTACAACACTACATGTATA
*
867049 TAGAACAACACTACATGTATA
1 TAGTACAACACTACATGTATA
*
867070 TAGTACAACAATACATGTATA
1 TAGTACAACACTACATGTATA
867091 TA
1 TA
867093 CTAAGTAGTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
21 107 0.86
22 2 0.02
23 15 0.12
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (21 bp):
TAGTACAACACTACATGTATA
Found at i:881813 original size:45 final size:45
Alignment explanation
Indices: 881751--882153 Score: 465
Period size: 45 Copynumber: 9.0 Consensus size: 45
881741 GTTGCCCAGG
* * *
881751 TTACTTACCAGATACACGAAGCATCCTCATATTCAAACTCCTCGG
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
** * *
881796 TTACACACCGGATACACGAAGCCTCCTCATTTTCAAACACCCTCGA
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAAC-TCCTCGA
* * ** *
881842 TTACTTACCAGATAAACGAAG--TCATCATTTTCAAACTTGTCGG
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
* * *
881885 TTACTTACCAGATACAAGAAGCATCCTCATTTTCAAACTCCGT-GG
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCC-TCGA
* * * *
881930 TTA-TTCACTAGTTACA-AAGAGCCTCCTCATTTTCAAACATCCTCAA
1 TTACTT-ACCAGATACACGA-AGCCTCCTCATTTTCAAAC-TCCTCGA
* * *
881976 TTACTTACCAGATACACCAAGCCTCCTCATTTACCAACTCCTCGA
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
* * * *
882021 TTACTTACCAGATGCACCAAGCCTCCTCATTTACCAACTCCTCGA
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
* * *
882066 TTACTTACCAGATACACCAAGCCTCCTCATTTACCAACTCCTCGA
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
882111 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTC
1 TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTC
882154 CTGTCTTTGA
Statistics
Matches: 310, Mismatches: 38, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
43 22 0.07
44 17 0.05
45 214 0.69
46 54 0.17
47 3 0.01
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.28
Consensus pattern (45 bp):
TTACTTACCAGATACACGAAGCCTCCTCATTTTCAAACTCCTCGA
Found at i:881989 original size:134 final size:135
Alignment explanation
Indices: 881749--882153 Score: 471
Period size: 134 Copynumber: 3.0 Consensus size: 135
881739 CAGTTGCCCA
* ** * *
881749 GGTTACTTACCAGATACACGAAGCATCCTCATATTCAAACTCCTCGGTTACACACCGGATAC-AC
1 GGTTACTTACCAGATACACGAAGCATCCTCATTTTCAAACTCCTCGGTTATTCACCAGATACAAA
* * *
881813 GAAGCCTCCTCATTTTCAAACACCCTCGATTACTTACCAGATAAACGAAG-TCATCATTTTCAAA
66 G-AGCCTCCTCATTTTCAAACATCCTCGATTACTTACCAGATACACGAAGCTCCTCATTTTCAAA
**
881877 CTTGTC
130 CTCCTC
* * *
881883 GGTTACTTACCAGATACAAGAAGCATCCTCATTTTCAAACTCCGT-GGTTATTCACTAGTTACAA
1 GGTTACTTACCAGATACACGAAGCATCCTCATTTTCAAACTCC-TCGGTTATTCACCAGATACAA
* * * *
881947 AGAGCCTCCTCATTTTCAAACATCCTCAATTACTTACCAGATACACCAAGCCTCCTCATTTACCA
65 AGAGCCTCCTCATTTTCAAACATCCTCGATTACTTACCAGATACACGAAG-CTCCTCATTTTCAA
882012 ACTCCTC
129 ACTCCTC
* * * * * * *
882019 GATTACTTACCAGATGCACCAAGCCTCCTCATTTACCAACTCCTCGATTACTT-ACCAGATACAC
1 GGTTACTTACCAGATACACGAAGCATCCTCATTTTCAAACTCCTCGGTTA-TTCACCAGATACA-
* * *
882083 CA-AGCCTCCTCATTTACCAAC-TCCTCGATTACTTACCAGATACACGAAGCCTCCTCATTTTCA
64 AAGAGCCTCCTCATTTTCAAACATCCTCGATTACTTACCAGATACACGAAG-CTCCTCATTTTCA
882146 AACTCCTC
128 AACTCCTC
882154 CTGTCTTTGA
Statistics
Matches: 230, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
134 97 0.42
135 50 0.22
136 80 0.35
137 3 0.01
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (135 bp):
GGTTACTTACCAGATACACGAAGCATCCTCATTTTCAAACTCCTCGGTTATTCACCAGATACAAA
GAGCCTCCTCATTTTCAAACATCCTCGATTACTTACCAGATACACGAAGCTCCTCATTTTCAAAC
TCCTC
Found at i:882421 original size:25 final size:25
Alignment explanation
Indices: 882387--882808 Score: 519
Period size: 25 Copynumber: 16.8 Consensus size: 25
882377 CAGCAAAACC
* *
882387 ACAGCAAATGTTAATGCCAACAACA
1 ACAGCAAATGTTAATGTCAACAACT
* *
882412 ACAGCAAATGTTAATGTGAACAACA
1 ACAGCAAATGTTAATGTCAACAACT
* *
882437 ACAACAAATGTTAATGTCAACAAAT
1 ACAGCAAATGTTAATGTCAACAACT
* * *
882462 ACGGCAAATGTTAAAGTCAACATCT
1 ACAGCAAATGTTAATGTCAACAACT
*
882487 ACAGCAAATGTTAATGTCAACAACC
1 ACAGCAAATGTTAATGTCAACAACT
882512 ACAGCAAAT-TGTAATGTCAAC-A--
1 ACAGCAAATGT-TAATGTCAACAACT
*
882534 ACAGCAAATGTTAATGTCAACAACC
1 ACAGCAAATGTTAATGTCAACAACT
*
882559 ACAGCAAATGTAAATGTCAACAAATAGGCCT
1 ACAGCAAATGTTAATGTCAAC--A-A---CT
* * *
882590 ACGGCAAATGTTAAAGTCAACATCT
1 ACAGCAAATGTTAATGTCAACAACT
*
882615 ACAGCAAATGTTAATGTCAACAACC
1 ACAGCAAATGTTAATGTCAACAACT
*
882640 ACAGCAAATGTTAATGTCAACAAAT
1 ACAGCAAATGTTAATGTCAACAACT
* * *
882665 ACGGCAAATGTTAAAGTCAACCACT
1 ACAGCAAATGTTAATGTCAACAACT
882690 ACAGCAAATGTTAATGTCAACAACT
1 ACAGCAAATGTTAATGTCAACAACT
* * *
882715 ACGGCAAATGTTAAAGTCAACCACT
1 ACAGCAAATGTTAATGTCAACAACT
882740 ACAGCAAATGTTAATGTCAACAACT
1 ACAGCAAATGTTAATGTCAACAACT
* *
882765 ACGGCAAATGTTAAAGTCAACAACT
1 ACAGCAAATGTTAATGTCAACAACT
*
882790 ACAGCAAATGTTAAAGTCA
1 ACAGCAAATGTTAATGTCA
882809 TGTTAATATT
Statistics
Matches: 343, Mismatches: 43, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
22 19 0.06
23 2 0.01
24 2 0.01
25 298 0.87
27 1 0.00
28 1 0.00
29 1 0.00
31 19 0.06
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.21
Consensus pattern (25 bp):
ACAGCAAATGTTAATGTCAACAACT
Found at i:882469 original size:86 final size:86
Alignment explanation
Indices: 882306--882469 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 86
882296 CAAAGAAACT
* * * * * *
882306 AAATGTTAATGTCAACAACAACAGCAGATGTTAACGATAACAATAACAGCAAATTCTTATCTCTA
1 AAATGTTAATGCCAACAACAACAGCAAATGTTAACGATAACAACAACAACAAATTCTAATCTCAA
*
882371 CATATACAGCAAAACCACAGC
66 CAAATACAGCAAAACCACAGC
* *
882392 AAATGTTAATGCCAACAACAACAGCAAATGTTAATG-TGAACAACAACAACAAATGT-TAATGTC
1 AAATGTTAATGCCAACAACAACAGCAAATGTTAACGAT-AACAACAACAACAAAT-TCTAATCTC
*
882455 AACAAATACGGCAAA
64 AACAAATACAGCAAA
882470 TGTTAAAGTC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 1 0.02
86 64 0.97
87 1 0.02
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.21
Consensus pattern (86 bp):
AAATGTTAATGCCAACAACAACAGCAAATGTTAACGATAACAACAACAACAAATTCTAATCTCAA
CAAATACAGCAAAACCACAGC
Found at i:883044 original size:41 final size:41
Alignment explanation
Indices: 882987--883600 Score: 1012
Period size: 41 Copynumber: 15.0 Consensus size: 41
882977 GTTGGAAAAT
* *
882987 TTGATAATGCTCACCTAGTGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883028 TTGATATTGCTCACCTAATGCAGGACAAATACAACTTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* *
883069 TTGATATTGCTCACCTAGTGCAGGACTAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883110 TTGATATTGCTCACCTAATGCAGGACAAATAGAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* * *
883151 TTGATATTGCTCATCTAGTGCAGGACAAATACAATGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883192 TTGATATTGCTCACCTAATACAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* *
883233 TTGATATTGCTCACCTAGTGCAGGACTAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* *
883274 TTGATATTGCTCACCTAGTGCAGGACTAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883315 TTGATATTGCTCATCTAATGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883356 TTGATATTGCTCATCTAATGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* *
883397 TTGATATTGCTCATCTAGTGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
* * *
883438 TTGATATTGCTCACCTAGTGCATGACTAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883479 TTGATATTGCTCATCTAATGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883520 TTGATATTGCGCACCTAATGCAGGACAAATACAACGTTATA
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
*
883561 TTGATATTGCGCACCTAATGCAGGACAAATACAACGTTAT
1 TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTAT
883601 TACAGAGTTA
Statistics
Matches: 540, Mismatches: 33, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 540 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (41 bp):
TTGATATTGCTCACCTAATGCAGGACAAATACAACGTTATA
Found at i:885516 original size:34 final size:34
Alignment explanation
Indices: 885473--885677 Score: 356
Period size: 34 Copynumber: 6.0 Consensus size: 34
885463 ATCACAGCAT
885473 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
885507 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
*
885541 CTGAATTATTTACTTATATTGACAAGTGTTTTCT
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
**
885575 CTGAATCGTTTACTTATATTGACAAGTGTTTTCA
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
**
885609 CTGAATCGTTTACTTATATTGACAAGTGTTTTCA
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
*
885643 CTGAATTATTTACTTATATTTACAAGTGTTTTCA
1 CTGAATTATTTACTTATATTGACAAGTGTTTTCA
885677 C
1 C
885678 GTCAAGTGTC
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 164 1.00
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (34 bp):
CTGAATTATTTACTTATATTGACAAGTGTTTTCA
Found at i:886526 original size:2 final size:2
Alignment explanation
Indices: 886519--886545 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
886509 NNNNNNNNNN
886519 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
886546 GAATATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:887280 original size:2 final size:2
Alignment explanation
Indices: 887273--887313 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
887263 AAGAATGCAA
887273 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
887314 GTGTGTGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:887670 original size:2 final size:2
Alignment explanation
Indices: 887665--887714 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
887655 CAAACACACG
887665 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
887707 CT CT CT CT
1 CT CT CT CT
887715 TTTAAAACAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:888923 original size:2 final size:2
Alignment explanation
Indices: 888916--888973 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
888906 AATAAGAATG
888916 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
888958 GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA
888974 CAGACAGACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:888978 original size:4 final size:4
Alignment explanation
Indices: 888971--889042 Score: 54
Period size: 4 Copynumber: 18.0 Consensus size: 4
888961 AGAGAGAGAG
* * * * * *
888971 AGAC AGAC AGAC AGAC AGAC AGGC AGGC AGGC AGGC AGGC AGAC GGAC
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
* * * *
889019 GGAC AGAC AGGC AGGC AGGC AGAC
1 AGAC AGAC AGAC AGAC AGAC AGAC
889043 GGACGGACGG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 62 1.00
ACGTcount: A:0.36, C:0.25, G:0.39, T:0.00
Consensus pattern (4 bp):
AGAC
Found at i:889047 original size:4 final size:4
Alignment explanation
Indices: 889040--889070 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
889030 CAGGCAGGCA
*
889040 GACG GACG GACG GACG GACG GACG GAAG GAC
1 GACG GACG GACG GACG GACG GACG GACG GAC
889071 AGACAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.48, T:0.00
Consensus pattern (4 bp):
GACG
Found at i:889743 original size:32 final size:32
Alignment explanation
Indices: 889702--889799 Score: 196
Period size: 32 Copynumber: 3.1 Consensus size: 32
889692 GTTCCCATTT
889702 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
1 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
889734 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
1 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
889766 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
1 CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
889798 CC
1 CC
889800 AAATTGGCAC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.24, C:0.45, G:0.12, T:0.18
Consensus pattern (32 bp):
CCTCCTCTCCAGAACCACAGGGCCTATCTCAA
Found at i:895713 original size:18 final size:18
Alignment explanation
Indices: 895682--895725 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
895672 AGCACACCAC
*
895682 TATAACAACACAAACAT-
1 TATAACATCACAAACATG
895699 TATAGACATCACAAACATG
1 TATA-ACATCACAAACATG
895718 TATAACAT
1 TATAACAT
895726 ACATTTACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.52, C:0.20, G:0.05, T:0.23
Consensus pattern (18 bp):
TATAACATCACAAACATG
Found at i:899294 original size:28 final size:28
Alignment explanation
Indices: 899225--899357 Score: 184
Period size: 28 Copynumber: 4.9 Consensus size: 28
899215 AGCTCCAACA
*
899225 TACAGAAAATCACACAGAATGGTAAGTG
1 TACAGACAATCACACAGAATGGTAAGTG
*
899253 T----ACAATCATACAGAATGGTAAGTG
1 TACAGACAATCACACAGAATGGTAAGTG
899277 TACAGACAATCACACAGAATGGTAAGTG
1 TACAGACAATCACACAGAATGGTAAGTG
* *
899305 TACAGACAATCACACAGAACGGTAATTG
1 TACAGACAATCACACAGAATGGTAAGTG
* *
899333 TACAGACACTCATACAGAATGGTAA
1 TACAGACAATCACACAGAATGGTAA
899358 ACGTTAAATC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.24
28 71 0.76
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.20
Consensus pattern (28 bp):
TACAGACAATCACACAGAATGGTAAGTG
Found at i:901320 original size:20 final size:20
Alignment explanation
Indices: 901297--901363 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
901287 ATGTGTGTGG
901297 TGTTGAATAGCACCGTGTTC
1 TGTTGAATAGCACCGTGTTC
901317 TGTTGAATAGCACCGTGTTC
1 TGTTGAATAGCACCGTGTTC
* ** *
901337 TGTTGAAGAGTGCTGTGTTC
1 TGTTGAATAGCACCGTGTTC
901357 TGTTGAA
1 TGTTGAA
901364 GAGTGCTGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.37
Consensus pattern (20 bp):
TGTTGAATAGCACCGTGTTC
Found at i:901379 original size:22 final size:20
Alignment explanation
Indices: 901311--901374 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
901301 GAATAGCACC
* ** *
901311 GTGTTCTGTTGAATAGCACC
1 GTGTTCTGTTGAAGAGTGCT
901331 GTGTTCTGTTGAAGAGTGCT
1 GTGTTCTGTTGAAGAGTGCT
901351 GTGTTCTGTTGAAGAGTGCT
1 GTGTTCTGTTGAAGAGTGCT
901371 GTGT
1 GTGT
901375 GTTCTAGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.16, C:0.12, G:0.33, T:0.39
Consensus pattern (20 bp):
GTGTTCTGTTGAAGAGTGCT
Found at i:901902 original size:20 final size:20
Alignment explanation
Indices: 901877--902070 Score: 280
Period size: 20 Copynumber: 9.6 Consensus size: 20
901867 ACATCACTAG
901877 TGTGTTCTGTTGAATAGTGC
1 TGTGTTCTGTTGAATAGTGC
*
901897 TGTGTTCTGTTTAAATAGTGC
1 TGTGTTCTG-TTGAATAGTGC
901918 TGTGTTCTGTTGAATAGTGC
1 TGTGTTCTGTTGAATAGTGC
**
901938 TGTGTTCTGTTGAATAGCAC
1 TGTGTTCTGTTGAATAGTGC
*
901958 TGTGTTCTGTTGAATAGCGC
1 TGTGTTCTGTTGAATAGTGC
**
901978 TGTGTTCTGTTGAATAACGC
1 TGTGTTCTGTTGAATAGTGC
901998 TGTGTTCTGTTGAATAGTGC
1 TGTGTTCTGTTGAATAGTGC
902018 TGTGTTCTGTTGAATAGTGC
1 TGTGTTCTGTTGAATAGTGC
* **
902038 TGTGTGTTCTTTTGAATAACGC
1 --TGTGTTCTGTTGAATAGTGC
902060 TGTGTTCTGTT
1 TGTGTTCTGTT
902071 CTCTTTGTAG
Statistics
Matches: 159, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
20 123 0.77
21 19 0.12
22 17 0.11
ACGTcount: A:0.16, C:0.12, G:0.27, T:0.45
Consensus pattern (20 bp):
TGTGTTCTGTTGAATAGTGC
Found at i:902184 original size:2 final size:2
Alignment explanation
Indices: 902177--902204 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
902167 GAGAGTCAAG
902177 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
902205 CTAATGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:904387 original size:14 final size:14
Alignment explanation
Indices: 904368--904402 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
904358 AGCCCTGAGT
904368 AAAGTTACTCTGTA
1 AAAGTTACTCTGTA
*
904382 AAAGTTACTCTTTA
1 AAAGTTACTCTGTA
904396 AAAGTTA
1 AAAGTTA
904403 ATGTTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (14 bp):
AAAGTTACTCTGTA
Found at i:905675 original size:2 final size:2
Alignment explanation
Indices: 905668--905713 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
905658 TTCCTGTATG
905668 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
905710 GA GA
1 GA GA
905714 CTCAAGTGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:906661 original size:12 final size:12
Alignment explanation
Indices: 906634--906671 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
906624 GATCACCTGT
906634 TGTCCGT-CGTC
1 TGTCCGTCCGTC
*
906645 CGTCCGTCCGTC
1 TGTCCGTCCGTC
*
906657 TGTCCATCCGTC
1 TGTCCGTCCGTC
906669 TGT
1 TGT
906672 AATCTTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.03, C:0.39, G:0.24, T:0.34
Consensus pattern (12 bp):
TGTCCGTCCGTC
Found at i:907174 original size:166 final size:159
Alignment explanation
Indices: 906841--907663 Score: 1005
Period size: 166 Copynumber: 5.0 Consensus size: 159
906831 GCATGTTTTT
* *
906841 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCTATATTTACACAAAAGCTTGTATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTT-------AGCTTCTATATA
* *
906906 TAGTGAAAATTTTAAATTATAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTT
59 TAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTT
* *
906971 CAAAGTTTAACATAGAAATACTTAAGAAAATGTTTA
124 CAAAGTTTAACATAGAAATACATAGGAAAATGTTTA
907007 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTT-GCTTGC-ATATATAGTGA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTAGCTT-CTATATATAGTGA
907070 AGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAAGT
65 AGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAAGT
907135 TTAACATAGAAATACATAGGAAAATGTTTAAAAGTTTA
130 TTAACATAGAAATACATAGGAAAA----T----GTTTA
* * ** *
907173 AAAAATCTTCTTCTCAAGAACCACTAATGC-CTATATTTACACAA-A---AGCTTCTATATATAG
1 AAAAATCTTCTTCTCAAGAACCAC---TGCACCAGAAATGC-CAATATTTAGCTTCTATATATAG
*
907233 TGAAGATTTTAAATTGTAAAAATCGTGGCCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAA
62 TGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAA
907298 AGTTTAACATAGAAATACATAGGAAAATGTTTA
127 AGTTTAACATAGAAATACATAGGAAAATGTTTA
* *
907331 AAAAATCTTCTTCTCAAGAACCATTGCACCAGAAATGCCTATATTTACACAAAAGCTTCTATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTT-------AGCTTCTATATA
* * * *
907396 TAGTGAAGATTTTAAATTGTAAAAATCGTGGCCCTCGGACCAAAACTGGTGCCCCAAGCGGGGTT
59 TAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTT
907461 CAAAGTTTAACATAGAAATACATAGGAAAATGTTTA
124 CAAAGTTTAACATAGAAATACATAGGAAAATGTTTA
* *
907497 AAAAATCTTCTTCTCAAGAACCATTGCACCAGAAATGCCAATTTTTACACAAAAGCTTGC-ATAT
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTT-------AGCTT-CTATAT
* * * * * * *
907561 ATTGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCCGTATCAAAACTGGGCCCCCAGGCGGGG
58 ATAGTGAAGATTTTAAATTGTAAAAATCGTGA-CCCTCGGACCAAAACTGGGGCACCAGGCGGGG
*
907626 TTCAAAGTTTAACATAGAAATACAAAGGAAAAATGTTT
122 TTCAAAGTTTAACATAGAAATACATAGG-AAAATGTTT
907664 TCATGACTTT
Statistics
Matches: 593, Mismatches: 34, Indels: 58
0.87 0.05 0.08
Matches are distributed among these distances:
155 5 0.01
156 6 0.01
158 128 0.22
162 2 0.00
165 1 0.00
166 376 0.63
167 54 0.09
168 15 0.03
169 6 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (159 bp):
AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTAGCTTCTATATATAGTGAA
GATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAAGTT
TAACATAGAAATACATAGGAAAATGTTTA
Found at i:907498 original size:324 final size:322
Alignment explanation
Indices: 906841--907663 Score: 1149
Period size: 324 Copynumber: 2.5 Consensus size: 322
906831 GCATGTTTTT
*
906841 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCTATATTTACACAAAAGCTTGTATATA
1 AAAAATCTTCTTCTCAAGAA-C-CT-CACCA-AAATGCCTATATTTACACAAAAGCTTCTATATA
* *
906906 TAGTGAAAATTTTAAATTATAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTT
62 TAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTT
* *
906971 CAAAGTTTAACATAGAAATACTTAAGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCAC
127 CAAAGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCAC
907036 CAGAAATGCCAATATTTGCTTGCATATATAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCG
192 CAGAAATGCCAATATTTGCTTGCATATATAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCG
*
907101 GACCAAAACTGGGGCACCAGGCGGGGTTCAAAGTTTAACATAGAAATACATAGGAAAATGTTTAA
257 GACCAAAACTGGGGCACCAAGCGGGGTTCAAAGTTTAACATAGAAATACATAGGAAAA---TT--
907166 AAGTTTA
317 -AGTTTA
*
907173 AAAAATCTTCTTCTCAAGAA-C-CA-C-TAATGCCTATATTTACACAAAAGCTTCTATATATAGT
1 AAAAATCTTCTTCTCAAGAACCTCACCAAAATGCCTATATTTACACAAAAGCTTCTATATATAGT
*
907234 GAAGATTTTAAATTGTAAAAATCGTGGCCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAA
66 GAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAA
*
907299 GTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCATTGCACCAGA
131 GTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGA
* *
907364 AATGCCTATATTTACACAAAAGCTT-CTATATATAGTGAAGATTTTAAATTGTAAAAATCGTGGC
196 AATGCCAATATTT--------GCTTGC-ATATATAGTGAAGATTTTAAATTGTAAAAATCGTGAC
* *
907428 CCTCGGACCAAAACTGGTGCCCCAAGCGGGGTTCAAAGTTTAACATAGAAATACATAGGAAAA-T
252 CCTCGGACCAAAACTGGGGCACCAAGCGGGGTTCAAAGTTTAACATAGAAATACATAGGAAAATT
907492 -GTTTA
317 AGTTTA
* *
907497 AAAAATCTTCTTCTCAAGAACCATTGCACCAGAAATGCCAATTTTTACACAAAAGCTTGC-ATAT
1 AAAAATCTTCTTCTCAAGAACC--T-CACCA-AAATGCCTATATTTACACAAAAGCTT-CTATAT
* * * * * * *
907561 ATTGTGAAGATTCTAAATTGTAAAAATCGTGACCCCCCGTATCAAAACTGGGCCCCCAGGCGGGG
61 ATAGTGAAGATTTTAAATTGTAAAAATCGTGA-CCCTCGGACCAAAACTGGGGCACCAGGCGGGG
*
907626 TTCAAAGTTTAACATAGAAATACAAAGGAAAAATGTTT
125 TTCAAAGTTTAACATAGAAATACATAGG-AAAATGTTT
907664 TCATGACTTT
Statistics
Matches: 446, Mismatches: 25, Indels: 38
0.88 0.05 0.07
Matches are distributed among these distances:
324 196 0.44
325 1 0.00
326 1 0.00
327 2 0.00
328 1 0.00
329 3 0.01
330 1 0.00
331 1 0.00
332 176 0.39
333 55 0.12
334 9 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (322 bp):
AAAAATCTTCTTCTCAAGAACCTCACCAAAATGCCTATATTTACACAAAAGCTTCTATATATAGT
GAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCACCAGGCGGGGTTCAAA
GTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGA
AATGCCAATATTTGCTTGCATATATAGTGAAGATTTTAAATTGTAAAAATCGTGACCCTCGGACC
AAAACTGGGGCACCAAGCGGGGTTCAAAGTTTAACATAGAAATACATAGGAAAATTAGTTTA
Found at i:909068 original size:81 final size:81
Alignment explanation
Indices: 908972--909133 Score: 186
Period size: 81 Copynumber: 2.0 Consensus size: 81
908962 ACTCTGGTGA
*
908972 AAAAAACCTAAATGCATATGATTATGA-TCCATG-AATCTCTCTACCAAAATTGTGAAATTCATG
1 AAAAAACCTAAATGC--ATGATTATGATTCCATGAAACCT-TCTACCAAAATTGTGAAATTCATG
* * *
909035 GTCCGTGGGTCGGGGGTTT
63 GTCCCTAGGTCAGGGGTTT
* * ** *
909054 AAAAAA-CTAGATGCATGGTTATGATTTTTATGAAACCTTCTACCTAAATTGTGAAATTCATGGT
1 AAAAAACCTAAATGCATGATTATGA-TTCCATGAAACCTTCTACCAAAATTGTGAAATTCATGGT
909118 CCCTAGGTCAGGGGTT
65 CCCTAGGTCAGGGGTT
909134 CAGGCCATAG
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 9 0.13
81 49 0.72
82 10 0.15
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (81 bp):
AAAAAACCTAAATGCATGATTATGATTCCATGAAACCTTCTACCAAAATTGTGAAATTCATGGTC
CCTAGGTCAGGGGTTT
Done.