oyster.v9_M.fa.s57.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold107
Parameters: 2 7 7 80 10 50 500
Length:  1028272

Tables:   1   2   3   

This is table  3  of  3  ( 334 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735708--735885	81	2.2	82	81	11	240	28	17	14	39	1.89
735742--735905	80	2.0	80	82	6	197	30	16	14	38	1.89
739959--740002	2	22.0	2	100	0	88	0	50	0	50	1.00
740288--740326	12	3.2	12	88	0	60	2	30	25	41	1.69
740287--740322	4	9.0	4	87	0	54	2	27	25	44	1.68
740351--740814	165	2.8	166	84	3	592	29	17	14	38	1.89
745194--745242	12	4.2	12	73	19	50	0	0	30	69	0.89
752090--752630	184	3.0	179	79	8	597	38	14	14	32	1.87
786230--786566	166	2.0	168	87	1	489	37	18	15	27	1.92
788796--788891	44	2.2	43	88	7	140	50	0	13	36	1.42
804916--804946	12	2.6	12	89	0	53	61	9	16	12	1.56
805971--806040	31	2.3	31	89	0	104	18	15	35	30	1.92
806016--806086	23	3.1	23	89	0	106	9	16	42	30	1.81
806039--806187	54	2.8	54	83	4	201	11	20	40	27	1.86
807486--808097	166	3.8	167	79	8	599	32	15	22	28	1.95
816025--816049	11	2.3	11	100	0	50	52	16	0	32	1.44
823280--824000	180	4.0	180	95	0	1282	36	17	15	30	1.91
827167--827200	2	17.0	2	100	0	68	0	50	0	50	1.00
828487--829038	21	26.3	21	85	4	504	22	9	21	46	1.79
828487--829038	42	13.2	43	85	3	559	22	9	21	46	1.79
828485--829038	63	8.8	63	84	5	646	22	9	21	46	1.79
830839--831149	157	2.0	156	100	0	613	31	13	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831519--831569	21	2.4	21	83	6	68	15	15	37	31	1.89
832553--832608	11	5.3	11	82	8	71	10	21	30	37	1.87
832550--832608	21	2.8	21	97	0	109	10	20	32	37	1.86
832550--832604	10	5.3	10	82	8	65	9	20	34	36	1.84
833667--834161	21	23.6	21	80	8	485	46	20	9	22	1.80
833667--834161	63	7.9	63	86	5	580	46	20	9	22	1.80
834632--834683	2	26.0	2	100	0	104	50	50	0	0	1.00
844606--844630	1	25.0	1	100	0	50	0	100	0	0	0.00
849238--849262	1	25.0	1	100	0	50	0	0	100	0	0.00
856918--856958	4	10.2	4	100	0	82	48	0	24	26	1.51
865171--865240	21	3.3	21	83	0	104	17	18	27	37	1.93
865171--865296	42	3.0	42	85	2	144	19	19	30	29	1.97
865206--865295	21	4.2	21	84	2	99	21	20	33	25	1.97
866783--866889	21	5.1	21	84	0	142	17	21	28	32	1.96
866885--866918	11	3.1	11	91	0	59	17	20	44	17	1.87
866788--866918	63	2.1	63	81	8	151	18	21	32	28	1.97
879442--879486	2	22.5	2	100	0	90	51	48	0	0	1.00
885057--885103	24	2.0	24	91	0	76	17	25	8	48	1.74
891442--891490	2	24.5	2	100	0	98	51	0	48	0	1.00
892190--892318	5	26.0	5	80	7	138	56	23	15	4	1.58
892560--892601	2	21.0	2	100	0	84	50	0	50	0	1.00
892616--892692	5	15.2	5	86	8	111	3	18	22	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893851--893885	12	2.9	12	86	0	52	2	40	14	42	1.60
898837--898870	2	17.0	2	100	0	68	0	50	0	50	1.00
899545--899604	2	30.0	2	100	0	120	0	50	0	50	1.00
901969--902001	12	2.8	12	86	4	50	0	36	27	36	1.57
908168--908200	14	2.3	15	90	10	52	69	27	0	3	1.03
912147--912186	2	20.0	2	100	0	80	50	0	50	0	1.00
922342--922487	73	2.0	73	97	0	274	35	9	12	42	1.75
923093--923130	18	2.1	18	85	9	51	39	13	5	42	1.66
925084--925194	55	2.0	55	100	0	222	44	7	16	32	1.75
926874--926967	38	2.5	38	92	0	152	35	15	28	20	1.94
930113--930154	2	21.0	2	100	0	84	0	50	0	50	1.00
936623--936679	21	2.6	22	94	5	107	47	0	52	0	1.00
938379--938892	37	13.9	37	75	9	469	23	22	14	39	1.91
938388--938894	74	6.9	74	88	1	721	24	22	14	38	1.92
938877--938906	14	2.1	14	100	0	60	26	23	23	26	2.00
939917--939943	4	6.8	4	100	0	54	0	0	22	77	0.76
940081--940127	1	47.0	1	91	0	76	95	4	0	0	0.25
940442--940501	2	30.0	2	100	0	120	50	0	50	0	1.00
946099--946196	18	5.4	18	91	0	160	38	54	6	1	1.32
946119--946176	15	3.5	15	75	24	62	43	50	5	1	1.35
946099--946197	36	2.8	36	95	0	180	39	53	6	1	1.32
947169--947193	12	2.1	12	100	0	50	28	8	32	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948085--948114	1	30.0	1	100	0	60	0	0	0	100	0.00
952046--952100	20	2.8	20	77	0	65	25	14	5	54	1.61
952042--952109	20	3.4	20	65	13	50	23	11	7	57	1.59
955717--955763	2	23.5	2	100	0	94	51	0	48	0	1.00
960039--960259	112	2.0	109	84	6	284	29	12	17	40	1.86
963372--963439	20	3.4	20	68	11	66	29	2	17	50	1.61
963368--963445	41	1.9	41	97	0	147	30	5	16	47	1.68
966109--966174	33	2.0	32	94	2	114	36	6	22	33	1.79
981127--981830	20	35.1	20	83	4	855	29	9	21	40	1.84
983250--983605	20	17.9	20	79	2	358	28	10	22	38	1.87
983906--983936	15	2.1	15	100	0	62	25	6	22	45	1.76
984910--984965	2	28.0	2	100	0	112	50	0	50	0	1.00
987954--987986	2	16.5	2	100	0	66	48	0	51	0	1.00
988299--988339	2	20.5	2	89	0	64	0	46	0	53	1.00
990735--990771	12	3.2	12	84	7	58	43	5	2	48	1.40
993514--993744	31	7.4	31	86	2	329	35	36	12	15	1.85
993514--993739	62	3.6	62	93	0	380	36	36	12	15	1.85
1002404--1002452	17	3.1	16	80	11	55	26	20	10	42	1.84
1002515--1002548	17	2.0	17	88	0	50	32	8	14	44	1.76
1012629--1012691	6	11.0	6	76	10	60	38	39	0	22	1.54
1012630--1012662	17	1.9	17	100	0	66	39	36	0	24	1.56
1012629--1012690	23	2.7	22	87	2	88	38	38	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012653--1012690	17	2.2	17	95	0	67	39	36	0	23	1.55
1016300--1016349	4	12.8	4	87	4	57	0	44	26	30	1.55
1016522--1017267	166	4.5	167	94	1	1223	38	20	15	25	1.92
1016519--1017267	333	2.3	332	92	1	1225	38	20	15	26	1.92
1017828--1018235	165	2.5	165	80	3	455	36	14	18	30	1.91
1018918--1018958	19	2.3	19	87	8	59	39	21	9	29	1.86

Tables:   1   2   3

The End!