Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1017
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1024007
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.32
Warning! 32449 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:661368 original size:12 final size:12
Alignment explanation
Indices: 661347--661393 Score: 78
Period size: 12 Copynumber: 3.9 Consensus size: 12
661337 TAAATTATAA
661347 AAAAACAAAAAAT
1 AAAAA-AAAAAAT
661360 AAAAAAAAAAAT
1 AAAAAAAAAAAT
661372 -AAAAAAAAAAT
1 AAAAAAAAAAAT
661383 AAAAAAAAAAA
1 AAAAAAAAAAA
661394 GTCCCACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.33
12 17 0.52
13 5 0.15
ACGTcount: A:0.91, C:0.02, G:0.00, T:0.06
Consensus pattern (12 bp):
AAAAAAAAAAAT
Found at i:661369 original size:11 final size:11
Alignment explanation
Indices: 661348--661392 Score: 72
Period size: 11 Copynumber: 3.9 Consensus size: 11
661338 AAATTATAAA
661348 AAAACAAAAAAT
1 AAAA-AAAAAAT
661360 AAAAAAAAAAAT
1 -AAAAAAAAAAT
661372 AAAAAAAAAAT
1 AAAAAAAAAAT
661383 AAAAAAAAAA
1 AAAAAAAAAA
661393 AGTCCCACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 21 0.66
12 7 0.22
13 4 0.12
ACGTcount: A:0.91, C:0.02, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:661383 original size:23 final size:24
Alignment explanation
Indices: 661348--661393 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
661338 AAATTATAAA
661348 AAAACAAAAAATAAAAAAAAAAAT
1 AAAACAAAAAATAAAAAAAAAAAT
661372 AAAA-AAAAAATAAAAAAAAAAA
1 AAAACAAAAAATAAAAAAAAAAA
661394 GTCCCACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.91, C:0.02, G:0.00, T:0.07
Consensus pattern (24 bp):
AAAACAAAAAATAAAAAAAAAAAT
Found at i:670129 original size:2 final size:2
Alignment explanation
Indices: 670122--670161 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
670112 GTATATTTAG
670122 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
670162 TGAGGGCTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:670489 original size:29 final size:29
Alignment explanation
Indices: 670407--670493 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
670397 AAATTCTTTC
670407 AAAGTGCGTTATCATAACGCACTTTGAAA
1 AAAGTGCGTTATCATAACGCACTTTGAAA
*
670436 AATA-T--G-T-TCA-AAGTGGCACTTTGAAA
1 AA-AGTGCGTTATCATAA--CGCACTTTGAAA
670462 AAAGTGCGTTATCATAACGCACTTTGAAA
1 AAAGTGCGTTATCATAACGCACTTTGAAA
670491 AAA
1 AAA
670494 AATTGTTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
24 2 0.04
25 4 0.09
26 15 0.32
27 1 0.02
28 1 0.02
29 18 0.38
30 4 0.09
31 2 0.04
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (29 bp):
AAAGTGCGTTATCATAACGCACTTTGAAA
Found at i:678457 original size:15 final size:15
Alignment explanation
Indices: 678432--678473 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 15
678422 GGTCAGTTTA
678432 CCCCTGTCAGACCTTG
1 CCCC-GTCAGACCTTG
678448 CCCCGTCAGAGACCTTG
1 CCCCGTC--AGACCTTG
678465 CCCCGTCAG
1 CCCCGTCAG
678474 TGTCTGCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.21
16 4 0.17
17 15 0.62
ACGTcount: A:0.14, C:0.45, G:0.21, T:0.19
Consensus pattern (15 bp):
CCCCGTCAGACCTTG
Found at i:678462 original size:17 final size:17
Alignment explanation
Indices: 678440--678473 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
678430 TACCCCTGTC
678440 AGACCTTGCCCCGTCAG
1 AGACCTTGCCCCGTCAG
678457 AGACCTTGCCCCGTCAG
1 AGACCTTGCCCCGTCAG
678474 TGTCTGCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (17 bp):
AGACCTTGCCCCGTCAG
Found at i:690741 original size:77 final size:77
Alignment explanation
Indices: 690614--690758 Score: 254
Period size: 77 Copynumber: 1.9 Consensus size: 77
690604 AGTCCAGTGA
** *
690614 CATGACATCATCCCAGGGTAATAGCAACAGTTGGTAACATGATAGATACCCACTGCATGTTGGTG
1 CATGACATCATCCCAAAGTAATAACAACAGTTGGTAACATGATAGATACCCACTGCATGTTGGTG
690679 CAATCATGCAAT
66 CAATCATGCAAT
*
690691 CATGACGTCATCCCAAAGTAATAACAACAGTTGGTAACATGATAGATACCCACTGCATGTTGGTG
1 CATGACATCATCCCAAAGTAATAACAACAGTTGGTAACATGATAGATACCCACTGCATGTTGGTG
690756 CAA
66 CAA
690759 AAACGTAATG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (77 bp):
CATGACATCATCCCAAAGTAATAACAACAGTTGGTAACATGATAGATACCCACTGCATGTTGGTG
CAATCATGCAAT
Found at i:702048 original size:2 final size:2
Alignment explanation
Indices: 702041--702085 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
702031 GTGACCCTTC
702041 CT CT CT CT CT CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
702082 CT CT
1 CT CT
702086 TAAAACAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:703514 original size:290 final size:289
Alignment explanation
Indices: 702994--703573 Score: 1151
Period size: 290 Copynumber: 2.0 Consensus size: 289
702984 CGGCTACGTC
702994 ATCCCTCTTCAAAACTTGAACTGTTCATTTTAGTAGTAGATATGTGTGTAAGTGGCATGTGCTGT
1 ATCCCTCTTCAAAACTTGAACTGTTCATTTTAGTAGTAGATATGTGTGTAAGTGGCATGTGCTGT
703059 GATTACTGAGTGAGCAGAGAACTGGACAGGGGTTTTACAGAACTATGTAACAGAGGACCGAGTGT
66 GATTACTGAGTGAGCAGAGAACTGGACAGGGGTTTTACAGAACTATGTAACAGAGGACCGAGTGT
703124 TTACACTTCACCAGTGAACAGATCAACTGTAGGATTTATTGACAACCTGTGTGCAAGTGACACAG
131 TTACACTTCACCAGTGAACAGATCAACTGTAGGATTTATTGACAACCTGTGTGCAAGTGACACAG
703189 TCAGCGACCCCACAGCATGCTTCAGTGCAATTCATATGCAATCCCCTTTCATTGATGAAATAAGC
196 TCAGCGACCCCACAGCATGCTTCAGTGCAATTCATATGCAATCCCCTTTCATTGATGAAATAAGC
703254 AAATCAATCAAAGAGGAAGGGGCCTGCCT
261 AAATCAATCAAAGAGGAAGGGGCCTGCCT
703283 NATCCCTCTTCAAAACTTGAACTGTTCATTTTAGTAGTAGATATGTGTGTAAGTGGCATGTGCTG
1 -ATCCCTCTTCAAAACTTGAACTGTTCATTTTAGTAGTAGATATGTGTGTAAGTGGCATGTGCTG
703348 TGATTACTGAGTGAGCAGAGAACTGGACAGGGGTTTTACAGAACTATGTAACAGAGGACCGAGTG
65 TGATTACTGAGTGAGCAGAGAACTGGACAGGGGTTTTACAGAACTATGTAACAGAGGACCGAGTG
703413 TTTACACTTCACCAGTGAACAGATCAACTGTAGGATTTATTGACAACCTGTGTGCAAGTGACACA
130 TTTACACTTCACCAGTGAACAGATCAACTGTAGGATTTATTGACAACCTGTGTGCAAGTGACACA
703478 GTCAGCGACCCCACAGCATGCTTCAGTGCAATTCATATGCAATCCCCTTTCATTGATGAAATAAG
195 GTCAGCGACCCCACAGCATGCTTCAGTGCAATTCATATGCAATCCCCTTTCATTGATGAAATAAG
703543 CAAATCAATCAAAGAGGAAGGGGCCTGCCT
260 CAAATCAATCAAAGAGGAAGGGGCCTGCCT
703573 A
1 A
703574 AGAGATAAGC
Statistics
Matches: 290, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
289 1 0.00
290 289 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (289 bp):
ATCCCTCTTCAAAACTTGAACTGTTCATTTTAGTAGTAGATATGTGTGTAAGTGGCATGTGCTGT
GATTACTGAGTGAGCAGAGAACTGGACAGGGGTTTTACAGAACTATGTAACAGAGGACCGAGTGT
TTACACTTCACCAGTGAACAGATCAACTGTAGGATTTATTGACAACCTGTGTGCAAGTGACACAG
TCAGCGACCCCACAGCATGCTTCAGTGCAATTCATATGCAATCCCCTTTCATTGATGAAATAAGC
AAATCAATCAAAGAGGAAGGGGCCTGCCT
Found at i:706449 original size:58 final size:58
Alignment explanation
Indices: 706379--706846 Score: 711
Period size: 58 Copynumber: 8.1 Consensus size: 58
706369 GCTACCTGTA
* * *
706379 CCCTATATAGTGTAGCAGGACTAAGCTCGAAACAGCTAGTACAAGTACTCCTGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* * * *
706437 CCCTATATAGTGTAGCAGGACTGAGCTCGAGACAGCTAATACAAGTACTCTTGCTTTC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* * *
706495 CCCAATATAGTGTAGCAGGACTGAGCTTGAGATAGCTAATACAAGTACTCCTGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* * * *
706553 CTCAATATAGTGTAGCAGGACTGAGCTTGAGATAGCTAATACAAGTACTCCTGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* * * *
706611 TCCTATATAGTGTAGCAGGACTGAGCTCAAGACAGCTAGTACAAGTACTCCGGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* * * * *
706669 CTCAATATAGTGTAGCAGGACTGAGCTCGAGATAGCTGGTACAAGTACTCTTGCTTTC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
* *
706727 CCCAATATAGTGTAGCAGGACTGAGCTCGAGATAGCTGGTACAAGTACTCCTGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
706785 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
1 CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
706843 CCCT
1 CCCT
706847 CAACATTTGT
Statistics
Matches: 377, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 377 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (58 bp):
CCCTATATAGTGTAGCAGGACTGAGCTCGAGATAGCTAGTACAAGTACTCCTGCTTCC
Found at i:711890 original size:17 final size:17
Alignment explanation
Indices: 711868--711901 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
711858 TCTGAACTGT
*
711868 GTCTTTGAGATCGCTCA
1 GTCTTTGAGATCACTCA
711885 GTCTTTGAGATCACTCA
1 GTCTTTGAGATCACTCA
711902 AAGTAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (17 bp):
GTCTTTGAGATCACTCA
Found at i:713415 original size:2 final size:2
Alignment explanation
Indices: 713410--713468 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
713400 ACAAATTTCT
713410 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
713452 GA GA GA GA G- GA GA GA GA
1 GA GA GA GA GA GA GA GA GA
713469 TGTATTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 55 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:714062 original size:11 final size:11
Alignment explanation
Indices: 714046--714073 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
714036 CATGGAAATA
714046 TTTAAACTGTG
1 TTTAAACTGTG
714057 TTTAAACTGTG
1 TTTAAACTGTG
714068 TTTAAA
1 TTTAAA
714074 TCAATGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.46
Consensus pattern (11 bp):
TTTAAACTGTG
Found at i:720826 original size:19 final size:19
Alignment explanation
Indices: 720804--720847 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
720794 AAATGAAGAC
* *
720804 TTTTTGCAAAGTTGTTTTT
1 TTTTTCCAAACTTGTTTTT
**
720823 TTTTTCCATTCTTGTTTTT
1 TTTTTCCAAACTTGTTTTT
720842 TTTTTC
1 TTTTTC
720848 ATTTTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.70
Consensus pattern (19 bp):
TTTTTCCAAACTTGTTTTT
Found at i:720840 original size:18 final size:16
Alignment explanation
Indices: 720818--720858 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
720808 TGCAAAGTTG
720818 TTTTTTTTTTCCATTCT
1 TTTTTTTTTTCCATT-T
*
720835 TGTTTTTTTTTTCATTT
1 T-TTTTTTTTTCCATTT
720852 TTTTTTT
1 TTTTTTT
720859 GTTATTCTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 3 0.14
18 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTTTTTTTTCCATTT
Found at i:723382 original size:26 final size:26
Alignment explanation
Indices: 723264--723440 Score: 118
Period size: 26 Copynumber: 6.9 Consensus size: 26
723254 CGCCCAATGG
*
723264 TATATCACCATCTTCCCATGCAGTGA
1 TATATCACCATCTGCCCATGCAGTGA
* *
723290 TATTGTCTATCACCATATGCCCATGCAGTGG
1 TA-----TATCACCATCTGCCCATGCAGTGA
* *
723321 CATATCACCACCTGCCCA---A-TGA
1 TATATCACCATCTGCCCATGCAGTGA
* * *
723343 TATAACCCCGTCTGCCCATGCAGTGA
1 TATATCACCATCTGCCCATGCAGTGA
*
723369 TATATCACCATCTGTCCATGCAGTGA
1 TATATCACCATCTGCCCATGCAGTGA
* * *
723395 AAAATCACCATCTGTCCA---A-TGA
1 TATATCACCATCTGCCCATGCAGTGA
* * *
723417 TATAACCCCATCTGCCCATACAGT
1 TATATCACCATCTGCCCATGCAGT
723441 AATACTGTAT
Statistics
Matches: 115, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
22 31 0.27
23 2 0.02
25 2 0.02
26 58 0.50
31 22 0.19
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.27
Consensus pattern (26 bp):
TATATCACCATCTGCCCATGCAGTGA
Found at i:723414 original size:74 final size:74
Alignment explanation
Indices: 723297--723440 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 74
723287 TGATATTGTC
** * *
723297 TATCACCATATGCCCATGCAGTGGCATATCACCACCTGCCCAATGATATAACCCCGTCTGCCCAT
1 TATCACCATATGCCCATGCAGTGAAAAATCACCACCTGCCCAATGATATAACCCCATCTGCCCAT
*
723362 GCAGTGATA
66 ACAGTGATA
* * * *
723371 TATCACCATCTGTCCATGCAGTGAAAAATCACCATCTGTCCAATGATATAACCCCATCTGCCCAT
1 TATCACCATATGCCCATGCAGTGAAAAATCACCACCTGCCCAATGATATAACCCCATCTGCCCAT
723436 ACAGT
66 ACAGT
723441 AATACTGTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (74 bp):
TATCACCATATGCCCATGCAGTGAAAAATCACCACCTGCCCAATGATATAACCCCATCTGCCCAT
ACAGTGATA
Found at i:731695 original size:35 final size:34
Alignment explanation
Indices: 731649--731717 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 34
731639 CCGATTACTC
*
731649 TTTTGAGCTGTCTAGGAATGGTTTTTACTTCTGT
1 TTTTGAGCTGTCTAGGAAAGGTTTTTACTTCTGT
731683 NTTTTGAGCTGTCTAGGAAAGGTTTTTACTTCTGT
1 -TTTTGAGCTGTCTAGGAAAGGTTTTTACTTCTGT
731718 ATTGTGTAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.16, C:0.12, G:0.23, T:0.48
Consensus pattern (34 bp):
TTTTGAGCTGTCTAGGAAAGGTTTTTACTTCTGT
Found at i:733673 original size:12 final size:12
Alignment explanation
Indices: 733656--733681 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
733646 ATTCTTCTAT
733656 ATAAAAAAAAAA
1 ATAAAAAAAAAA
733668 ATAAAAAAAAAA
1 ATAAAAAAAAAA
733680 AT
1 AT
733682 GCTGTACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (12 bp):
ATAAAAAAAAAA
Found at i:735380 original size:15 final size:15
Alignment explanation
Indices: 735360--735390 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
735350 ATGAAATGAA
735360 TACTAATGGGCTTAT
1 TACTAATGGGCTTAT
735375 TACTAATGGGCTTAT
1 TACTAATGGGCTTAT
735390 T
1 T
735391 TTCAAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (15 bp):
TACTAATGGGCTTAT
Found at i:737411 original size:27 final size:27
Alignment explanation
Indices: 737371--737451 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
737361 CTCCAAACAG
*
737371 AAGTCCACCAACACCCTGGTCCGGTCC
1 AAGTCCACCGACACCCTGGTCCGGTCC
737398 AAGTCCACCGACACCCTGGTCCGGTCC
1 AAGTCCACCGACACCCTGGTCCGGTCC
* * *
737425 AAG-CCCCCTGACACTCTAGTCCGGTCC
1 AAGTCCACC-GACACCCTGGTCCGGTCC
737452 CTAGAGACAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.08
27 45 0.92
ACGTcount: A:0.20, C:0.44, G:0.20, T:0.16
Consensus pattern (27 bp):
AAGTCCACCGACACCCTGGTCCGGTCC
Found at i:737795 original size:17 final size:17
Alignment explanation
Indices: 737773--737812 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
737763 TCTTGAGGAA
737773 TGTTTTAATCCTCAGTC
1 TGTTTTAATCCTCAGTC
737790 TGTTTTAATCCTCAGTC
1 TGTTTTAATCCTCAGTC
737807 TGTTTT
1 TGTTTT
737813 GAGGAATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.15, C:0.20, G:0.12, T:0.53
Consensus pattern (17 bp):
TGTTTTAATCCTCAGTC
Found at i:742600 original size:17 final size:18
Alignment explanation
Indices: 742569--742606 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
742559 CTGTGTTAGT
*
742569 AAACATGTAAATTATAGC
1 AAACATGTAAATTATAAC
742587 AAACATGT-AATTATAAC
1 AAACATGTAAATTATAAC
742604 AAA
1 AAA
742607 GAAATCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (18 bp):
AAACATGTAAATTATAAC
Found at i:746338 original size:15 final size:15
Alignment explanation
Indices: 746318--746349 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
746308 AGATTGCTAG
746318 TAATATAGGAAACAA
1 TAATATAGGAAACAA
*
746333 TAATATAGGAGACAA
1 TAATATAGGAAACAA
746348 TA
1 TA
746350 GTTTTTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (15 bp):
TAATATAGGAAACAA
Found at i:747958 original size:17 final size:18
Alignment explanation
Indices: 747927--747960 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
747917 TCAAATACAC
*
747927 TACATTTAGTGAGTTTAA
1 TACATTTAGTAAGTTTAA
747945 TACA-TTAGTAAGTTTA
1 TACATTTAGTAAGTTTA
747961 GTTTCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (18 bp):
TACATTTAGTAAGTTTAA
Found at i:753154 original size:12 final size:12
Alignment explanation
Indices: 753121--753164 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
753111 TAATTCTTCC
753121 TCCTCCTCATCT
1 TCCTCCTCATCT
753133 TCTTCATCCTCATCT
1 TC--C-TCCTCATCT
*
753148 TCCTCCTCCTCT
1 TCCTCCTCATCT
753160 TCCTC
1 TCCTC
753165 ATCTCTAGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 15 0.54
13 1 0.04
14 1 0.04
15 11 0.39
ACGTcount: A:0.07, C:0.50, G:0.00, T:0.43
Consensus pattern (12 bp):
TCCTCCTCATCT
Found at i:753157 original size:15 final size:15
Alignment explanation
Indices: 753115--753158 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
753105 CACTTCTAAT
753115 TCTTCCTCCTCCTCA
1 TCTTCCTCCTCCTCA
* *
753130 TCTTCTTCATCCTCA
1 TCTTCCTCCTCCTCA
753145 TCTTCCTCCTCCTC
1 TCTTCCTCCTCCTC
753159 TTCCTCATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.50, G:0.00, T:0.43
Consensus pattern (15 bp):
TCTTCCTCCTCCTCA
Found at i:756783 original size:26 final size:26
Alignment explanation
Indices: 756752--757353 Score: 692
Period size: 26 Copynumber: 23.2 Consensus size: 26
756742 TTTAATTTCT
*
756752 ATCTAAGCATGATCTTACTAACCTTG
1 ATCTAAGCATGATTTTACTAACCTTG
* * **
756778 AACTAAGCATGATTTTACTAACGTCA
1 ATCTAAGCATGATTTTACTAACCTTG
** **
756804 ATCTAAATATGATTTTACTAACCTCA
1 ATCTAAGCATGATTTTACTAACCTTG
*
756830 ATCTAAGCATGATCTTACTAACCTTG
1 ATCTAAGCATGATTTTACTAACCTTG
756856 ATCTAAGCATGATTTTACTAACCTCT-
1 ATCTAAGCATGATTTTACTAACCT-TG
756882 ATCTAAGCATGATTTTACTAACCTTG
1 ATCTAAGCATGATTTTACTAACCTTG
756908 ATCTAAGCATGATTTTACTAACCTTG
1 ATCTAAGCATGATTTTACTAACCTTG
* * *
756934 AACTAAGCATGATCTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* *
756960 ATCTAAGCATGATCTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* * *
756986 AACTAAGCACGATCTTACTAACCTTG
1 ATCTAAGCATGATTTTACTAACCTTG
* * * *
757012 ATTTAAACATGATTTTACTAGCCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
*
757038 ATCTAAGCATGATTTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* * *
757064 ATTTAAGCACT-ATCTTACTAACCTCG
1 ATCTAAGCA-TGATTTTACTAACCTTG
* * *
757090 ATCTAAACATGCTTTAACTAACCTCT-
1 ATCTAAGCATGATTTTACTAACCT-TG
**
757116 ATCTAAGCATGATTTTACTAACCTCA
1 ATCTAAGCATGATTTTACTAACCTTG
** *
757142 ATCTAAATATGATTTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
*
757168 ATTTAAGCATGATTTTACTAACCTCT-
1 ATCTAAGCATGATTTTACTAACCT-TG
* **
757194 ATCTAAGCATGATCTTACTAACCTCA
1 ATCTAAGCATGATTTTACTAACCTTG
* *
757220 ATCTAAGCATGATCTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* *
757246 ATCTTAGCATGATTTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* * **
757272 ATCTAA-TATGATTCTACTAACCACG
1 ATCTAAGCATGATTTTACTAACCTTG
*
757297 ATCTAAGCATGATTTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
* *
757323 ATCTTAGCATGATTTTACTAACCTCG
1 ATCTAAGCATGATTTTACTAACCTTG
757349 ATCTA
1 ATCTA
757354 GTTTATAGTT
Statistics
Matches: 501, Mismatches: 66, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
25 24 0.05
26 475 0.95
27 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (26 bp):
ATCTAAGCATGATTTTACTAACCTTG
Found at i:756886 original size:78 final size:78
Alignment explanation
Indices: 756752--757353 Score: 814
Period size: 78 Copynumber: 7.7 Consensus size: 78
756742 TTTAATTTCT
* * * * **
756752 ATCTAAGCATGATCTTACTAACCTTGAACTAAGCATGATTTTACTAACGTCAATCTAAATATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
756817 TTTACTAACCTCA
66 TTTACTAACCTCA
* *
756830 ATCTAAGCATGATCTTACTAACCTTGATCTAAGCATGATTTTACTAACCTCTATCTAAGCATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
**
756895 TTTACTAACCTTG
66 TTTACTAACCTCA
* * * *
756908 ATCTAAGCATGATTTTACTAACCTTGAACTAAGCATGATCTTACTAACCTCGATCTAAGCATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
*
756973 CTTACTAACCTCGA
66 TTTACTAACCTC-A
* * * * *
756987 A-CTAAGCACGATCTTACTAACCTTGATTTAAACATGATTTTACTAGCCTCGATCTAAGCATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
*
757051 TTTACTAACCTCG
66 TTTACTAACCTCA
* * * * *
757064 ATTTAAGCACT-ATCTTACTAACCTCGATCTAAACATGCTTTAACTAACCTCTATCTAAGCATGA
1 ATCTAAGCA-TGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGA
757128 TTTTACTAACCTCA
65 TTTTACTAACCTCA
** * * *
757142 ATCTAAATATGATTTTACTAACCTCGATTTAAGCATGATTTTACTAACCTCTATCTAAGCATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
*
757207 CTTACTAACCTCA
66 TTTACTAACCTCA
* *
757220 ATCTAAGCATGATCTTACTAACCTCGATCTTAGCATGATTTTACTAACCTCGATCTAA-TATGAT
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
* * *
757284 TCTACTAACCACG
66 TTTACTAACCTCA
* *
757297 ATCTAAGCATGATTTTACTAACCTCGATCTTAGCATGATTTTACTAACCTCGATCTA
1 ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTA
757354 GTTTATAGTT
Statistics
Matches: 467, Mismatches: 53, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
77 72 0.15
78 394 0.84
79 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (78 bp):
ATCTAAGCATGATCTTACTAACCTCGATCTAAGCATGATTTTACTAACCTCGATCTAAGCATGAT
TTTACTAACCTCA
Found at i:759491 original size:451 final size:450
Alignment explanation
Indices: 758649--759549 Score: 1766
Period size: 451 Copynumber: 2.0 Consensus size: 450
758639 AACCTGTGTG
758649 GGCAAAAATGTTCAATTATATCCAACATGATGTTGTTCATGCATGTATAAAACAATTACAGTTAC
1 GGCAAAAATGTTCAATTATATCCAACATGATGTTGTTCATGCATGTATAAAACAATTACAGTTAC
758714 ATGTAAATAATTTTACTAAGAACCTCATTACACTCAAGACCTTTAAATTCTATAGTGTATATTTG
66 ATGTAAATAATTTTACTAAGAACCTCATTACACTCAAGACCTTTAAATTCTATAGTGTATATTTG
758779 TACATGGGATGTATATTATACGCAATTGACAATCCTTACATACTGCATGCACCATTAGCATGAAA
131 TACATGGGATGTATATTATACGCAATTGACAATCCTTACATACTGCATGCACCATTAGCATGAAA
758844 TACACCTAATATTGTGGTTACACTGCGTATTGTATGTGGTTGGCGGTCCTTACTTGTTGCCGGAC
196 TACACCTAATATTGTGGTTACACTGCGTATTGTATGTGGTTGGCGGTCCTTACTTGTTGCCGGAC
758909 ACATCCAGCACGTGGAGCTCCTTCAGGTTACCTAACTCCTGCGGCAGCCTCAGCAGACGGTTGTC
261 ACATCCAGCACGTGGAGCTCCTTCAGGTTACCTAACTCCTGCGGCAGCCTCAGCAGACGGTTGTC
758974 TCTGAGGGACACCACATTCAGCCGCACACACTGTCCAATCTACAACAGGCAGGGTCAAGGTGATT
326 TCTGAGGGACACCACATTCAGCCGCACACACTGTCCAATCTACAACAGGCAGGGTCAAGGTGATT
759039 CCAACATCTAATACACATACTGTATACAGGGTTATTTTTGCCCCTTATTATTTTCGCCCT
391 CCAACATCTAATACACATACTGTATACAGGGTTATTTTTGCCCCTTATTATTTTCGCCCT
*
759099 NGGCAAAAATGTTCAATTATATCCAACATGATGTTGTTTATGCATGTATAAAACAATTACAGTTA
1 -GGCAAAAATGTTCAATTATATCCAACATGATGTTGTTCATGCATGTATAAAACAATTACAGTTA
759164 CATGTAAATAATTTTACTAAGAACCTCATTACACTCAAGACCTTTAAATTCTATAGTGTATATTT
65 CATGTAAATAATTTTACTAAGAACCTCATTACACTCAAGACCTTTAAATTCTATAGTGTATATTT
*
759229 GTACATGGGATGTATATTATACGCAATTGACAATCCTTACATACTGCATGCACCATTATCATGAA
130 GTACATGGGATGTATATTATACGCAATTGACAATCCTTACATACTGCATGCACCATTAGCATGAA
759294 ATACACCTAATATTGTGGTTACACTGCGTATTGTATGTGGTTGGCGGTCCTTACTTGTTGCCGGA
195 ATACACCTAATATTGTGGTTACACTGCGTATTGTATGTGGTTGGCGGTCCTTACTTGTTGCCGGA
*
759359 CACATCCAGCACGTGGAGCTCCTTCAGGTTACCTAACTCCTGCGGCAGCCTCAGCAGGCGGTTGT
260 CACATCCAGCACGTGGAGCTCCTTCAGGTTACCTAACTCCTGCGGCAGCCTCAGCAGACGGTTGT
759424 CTCTGAGGGACACCACATTCAGCCGCACACACTGTCCAATCTACAACAGGCAGGGTCAAGGTGAT
325 CTCTGAGGGACACCACATTCAGCCGCACACACTGTCCAATCTACAACAGGCAGGGTCAAGGTGAT
759489 TCCAACATCTAATACACATACTGTATACAGGGTTATTTTTGCCCCTTATTATTTTCGCCCT
390 TCCAACATCTAATACACATACTGTATACAGGGTTATTTTTGCCCCTTATTATTTTCGCCCT
759550 TCTACACTTG
Statistics
Matches: 447, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
451 447 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (450 bp):
GGCAAAAATGTTCAATTATATCCAACATGATGTTGTTCATGCATGTATAAAACAATTACAGTTAC
ATGTAAATAATTTTACTAAGAACCTCATTACACTCAAGACCTTTAAATTCTATAGTGTATATTTG
TACATGGGATGTATATTATACGCAATTGACAATCCTTACATACTGCATGCACCATTAGCATGAAA
TACACCTAATATTGTGGTTACACTGCGTATTGTATGTGGTTGGCGGTCCTTACTTGTTGCCGGAC
ACATCCAGCACGTGGAGCTCCTTCAGGTTACCTAACTCCTGCGGCAGCCTCAGCAGACGGTTGTC
TCTGAGGGACACCACATTCAGCCGCACACACTGTCCAATCTACAACAGGCAGGGTCAAGGTGATT
CCAACATCTAATACACATACTGTATACAGGGTTATTTTTGCCCCTTATTATTTTCGCCCT
Found at i:763721 original size:2 final size:2
Alignment explanation
Indices: 763714--763764 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
763704 TTTACTCCCC
763714 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
763756 C- CT CT CT CT
1 CT CT CT CT CT
763765 GTTTTAATTC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:771721 original size:2 final size:2
Alignment explanation
Indices: 771714--771761 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
771704 NNNNNNNNNG
771714 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
771756 GA GA GA
1 GA GA GA
771762 CTTTCAAAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:772303 original size:16 final size:16
Alignment explanation
Indices: 772232--772323 Score: 94
Period size: 16 Copynumber: 5.5 Consensus size: 16
772222 AATTGCAGAC
*
772232 GTTTAGGCCTCAACAT
1 GTTTAGGCCCCAACAT
* * *
772248 GTTTACGCCCCAAGAC
1 GTTTAGGCCCCAACAT
* *
772264 GGTTAGGCCCCAGGTAAGAT
1 GTTTAGGCCCC----AACAT
772284 GTTTAGGCCCCAACAT
1 GTTTAGGCCCCAACAT
772300 GTTTAGGCCCCAACAT
1 GTTTAGGCCCCAACAT
772316 GTTTAGGC
1 GTTTAGGC
772324 AGCTGTTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
16 49 0.78
20 14 0.22
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (16 bp):
GTTTAGGCCCCAACAT
Found at i:776412 original size:48 final size:48
Alignment explanation
Indices: 776360--776476 Score: 171
Period size: 48 Copynumber: 2.4 Consensus size: 48
776350 AAAGCCTCCA
776360 GAATTTGCTCCAAAACCTCCACTACTTCCAAAGCCTCCAGAAGAACCT
1 GAATTTGCTCCAAAACCTCCACTACTTCCAAAGCCTCCAGAAGAACCT
* * * * * *
776408 GAATTTACACCAAAGCTTCCACTACTTCCAAAGCCTCCAGAGGAACTT
1 GAATTTGCTCCAAAACCTCCACTACTTCCAAAGCCTCCAGAAGAACCT
*
776456 GAGTTTGCTCCAAAACCTCCA
1 GAATTTGCTCCAAAACCTCCA
776477 GATGACCCTG
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.32, C:0.33, G:0.12, T:0.22
Consensus pattern (48 bp):
GAATTTGCTCCAAAACCTCCACTACTTCCAAAGCCTCCAGAAGAACCT
Found at i:776475 original size:30 final size:30
Alignment explanation
Indices: 776434--776506 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
776424 TTCCACTACT
* *
776434 TCCAAAGCCTCCAGAGGAACTTGAGTTTGC
1 TCCAAAACCTCCAGAGGAACCTGAGTTTGC
* * *
776464 TCCAAAACCTCCAGATGACCCTGTGTTTGC
1 TCCAAAACCTCCAGAGGAACCTGAGTTTGC
776494 TCCAAAACCTCCA
1 TCCAAAACCTCCA
776507 AGAGATCCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.23
Consensus pattern (30 bp):
TCCAAAACCTCCAGAGGAACCTGAGTTTGC
Found at i:783570 original size:4 final size:4
Alignment explanation
Indices: 783555--783603 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
783545 ATCACCCGTT
* * *
783555 GTCC GT-C GTCC GTCC GTCC GTCC GTCC GTCT GTCT GTCT GTCC GTCC
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC
783602 GT
1 GT
783604 AAACTTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 3 0.07
4 39 0.93
ACGTcount: A:0.00, C:0.41, G:0.27, T:0.33
Consensus pattern (4 bp):
GTCC
Found at i:784047 original size:166 final size:167
Alignment explanation
Indices: 783773--784518 Score: 1133
Period size: 166 Copynumber: 4.5 Consensus size: 167
783763 GCATGTCTTT
783773 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
783838 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTT
66 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTT
* *
783903 CAAAGTTTAACATAGAAATA-CATAGGAAATTTTTTA
131 CAAAGTTTAACATAGAAATACCATAGGAAAATGTTTA
*
783939 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACATAAGCTTGTATACT
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATA-T
* * *
784004 -TAGTGAAGATTCTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTTGGGCCCCAGGCGGGGG
65 ATAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGT
* *
784068 TCAAA-TTTAACATAGATATACCTTAGGAAAATGTTTA
130 TCAAAGTTTAACATAGAAATACCATAGGAAAATGTTTA
*
784105 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTTTATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
* * *
784170 TAGTGAAGATTCTAAATTGTAACAATTGTGACCCTCGGACCAAAACTGGGGCCTCAGGCGGGGTT
66 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTT
* *
784235 CAAAGTTTAACATAGATATACCTTAGGAAAATGTTTA
131 CAAAGTTTAACATAGAAATACCATAGGAAAATGTTTA
* *
784272 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGTCAATATTTACACAAAAGCTTGTATGTA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
* * ** * **
784337 TAATGAAGATTCTAAATTGTAGAAATCGTGACCCTCAAATCAAAACTGCAGCCCCAGGCGGGGTT
66 TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTT
* *
784402 CAAAGTTTAACATAGAACTA-CATATGAAAAATGTTT-
131 CAAAGTTTAACATAGAAATACCATA-GGAAAATGTTTA
* * * * ** * *
784438 AAAAATTTTCTTCTCAAAAACCACTTCACCAAAAATGCCAATACATACACAAACGGTTGTATATA
1 AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
*
784503 TAGTGAAGATTGTAAA
66 TAGTGAAGATTCTAAA
784519 AATCGTGACC
Statistics
Matches: 532, Mismatches: 43, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
165 15 0.03
166 339 0.64
167 178 0.33
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (167 bp):
AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATA
TAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTT
CAAAGTTTAACATAGAAATACCATAGGAAAATGTTTA
Found at i:784476 original size:333 final size:331
Alignment explanation
Indices: 783770--784518 Score: 1137
Period size: 333 Copynumber: 2.3 Consensus size: 331
783760 GGTGCATGTC
783770 TTTAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTAT
1 TTTAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTAT
783835 ATATAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGG
66 ATATAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGG
* *
783900 GTTCAAAGTTTAACATAGAAATACATAGGAAATTTTTTAAAAAATCTTCTTCTCAAGAACCACTG
131 GTTCAAAGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTG
* *
783965 CACCAGAAATGCCAATATTTACACATAAGCTTGTATACTTAGTGAAGATTCTAAATTGTAAAAAT
196 CACCAGAAATGCCAATATTTACACAAAAGCTTGTATACTTAATGAAGATTCTAAATTGTAAAAAT
* ** * * *
784030 TGTGACCCTCGGACCAAAACTTGGGCCCCAGGCGGGGGTCAAATTTAACATAGATATACCTTAGG
261 CGTGACCCTCAAACCAAAACTTGAGCCCCAGGCGGGGGTCAAATTTAACATAGATATACATTAGA
784095 AAAATG
326 AAAATG
*
784101 TTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTT
1 TTT-AAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTA
* * *
784166 TATATAGTGAAGATTCTAAATTGTAACAATTGTGACCCTCGGACCAAAACTGGGGCCTCAGGCGG
65 TATATAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGG
* *
784231 GGTTCAAAGTTTAACATAGATATACCTTAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCAC
130 GGTTCAAAGTTTAACATAGAAATA-CATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCAC
* * *
784296 TGCACCAGAAATGTCAATATTTACACAAAAGCTTGTAT-GTATAATGAAGATTCTAAATTGTAGA
194 TGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATACT-TAATGAAGATTCTAAATTGTAAA
* *
784360 AATCGTGACCCTCAAATCAAAAC-TGCAGCCCCAGGCGGGGTTCAAAGTTTAACATAGA-ACTAC
258 AATCGTGACCCTCAAACCAAAACTTG-AGCCCCAGGCGGGGGTCAAA-TTTAACATAGATA-TAC
784423 A-TATGAAAAATG
320 ATTA-GAAAAATG
* * * * ** * *
784435 TTTAAAAATTTTCTTCTCAAAAACCACTTCACCAAAAATGCCAATACATACACAAACGGTTGTAT
1 TTTAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTAT
*
784500 ATATAGTGAAGATTGTAAA
66 ATATAGTGAAGATTCTAAA
784519 AATCGTGACC
Statistics
Matches: 380, Mismatches: 31, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
331 3 0.01
332 148 0.39
333 205 0.54
334 24 0.06
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (331 bp):
TTTAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTAT
ATATAGTGAAGATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGG
GTTCAAAGTTTAACATAGAAATACATAGGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTG
CACCAGAAATGCCAATATTTACACAAAAGCTTGTATACTTAATGAAGATTCTAAATTGTAAAAAT
CGTGACCCTCAAACCAAAACTTGAGCCCCAGGCGGGGGTCAAATTTAACATAGATATACATTAGA
AAAATG
Found at i:785363 original size:165 final size:165
Alignment explanation
Indices: 785078--785485 Score: 473
Period size: 165 Copynumber: 2.5 Consensus size: 165
785068 CGGTATATAT
* * * * *
785078 GGAAAATGTTTAAAAATCTTCTTT-TCGAGAACTACAATGCATCAGTTTGTCAGATAACTACGTA
1 GGAAAATGTTTAAAAATCTT-TTTCTCGAGAACTATAATGCTTCAGTTTGTGAGATAACTATGCA
* * * *
785142 AGCACCCTCAAATAGTGTAGATTCGAAATTATAAAAGCTGTGACCTCAATCTAATACTGGGGCCC
65 AGCATCCTCAAATAATGTAGATTCCAAATAATAAAAGCTGTGACCTCAATCTAATACTGGGGCCC
* * *
785207 AAAGAGGTGTTCAAAGTTTAGCATAGAAATATAGAG
130 AAAGAGGGGTTCAAAGTTTAACATAGAAAGATAGAG
* * * *
785243 GGAAAATGTTGAAAAATCTTTTTCTAGGGAACTATAATGCTTCAGCTTGTGAGATAACTATGCAA
1 GGAAAATGTTTAAAAATCTTTTTCTCGAGAACTATAATGCTTCAGTTTGTGAGATAACTATGCAA
* * * * *
785308 GCATCCTTAAATAATGTAGATTCCAAATAATTAAAA-CTTTAGCCCTGAA-CTAATACTGTGGCC
66 GCATCCTCAAATAATGTAGATTCCAAATAA-TAAAAGCTGT-GACCTCAATCTAATACTGGGGCC
* * *
785371 CCAAGAGGGGTTCAAAGTTTAACATAGAAAGATATAT
129 CAAAGAGGGGTTCAAAGTTTAACATAGAAAGATAGAG
* * * * *
785408 TGAAAATGTTTTTAAAAA-GTTTTTCTCGAGAACTATAATGCTACAGTTTGTGAGATTATTATGC
1 GGAAAATG--TTTAAAAATCTTTTTCTCGAGAACTATAATGCTTCAGTTTGTGAGATAACTATGC
*
785472 AAGGATCCTCAAAT
64 AAGCATCCTCAAAT
785486 TGTGTAAACT
Statistics
Matches: 203, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
164 3 0.01
165 131 0.65
166 62 0.31
167 7 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (165 bp):
GGAAAATGTTTAAAAATCTTTTTCTCGAGAACTATAATGCTTCAGTTTGTGAGATAACTATGCAA
GCATCCTCAAATAATGTAGATTCCAAATAATAAAAGCTGTGACCTCAATCTAATACTGGGGCCCA
AAGAGGGGTTCAAAGTTTAACATAGAAAGATAGAG
Found at i:786678 original size:165 final size:165
Alignment explanation
Indices: 786393--786716 Score: 411
Period size: 165 Copynumber: 2.0 Consensus size: 165
786383 CGCTATATAT
* * * *
786393 GGAAAATGTTTAAAAATCTTCTTTTCGAGAACTACAATGCATCAGTTTGTCAGATAACTACGTAA
1 GGAAAATGTTGAAAAATCTTCTTTTAGAGAACTACAATGCATCAGCTTGTCAGATAACTACGCAA
* * *
786458 GCACCCTCAAATAGTGTAGATTCGAAATTATAAAAGCTGTGACCTCAATCTAATACTGGGGCCCA
66 GCACCCTCAAATAATGTAGATTCCAAATAATAAAAGCTGTGACCTCAATCTAATACTGGGGCCCA
* *
786523 AAGAGGTGTTCAAAGTTTAGCATAGAAATATAGAG
131 AAGAGGGGTTCAAAGTTTAACATAGAAATATAGAG
* * * * *
786558 GGAAAATGTTGAAAAATCTT-TTTCTAGGGAACTATAATGCTTCAGCTTGTGAGATAACTATGCA
1 GGAAAATGTTGAAAAATCTTCTTT-TAGAGAACTACAATGCATCAGCTTGTCAGATAACTACGCA
* * * * * *
786622 AGCATCCTTAAATAATGTAGATTCCAAATAATTAAAA-CTTTAGCCCTGAA-CTAATACTGTGGC
65 AGCACCCTCAAATAATGTAGATTCCAAATAA-TAAAAGCTGT-GACCTCAATCTAATACTGGGGC
*
786685 CCCAAGAGGGGTTCAAAGTTTAACATAGAAAT
128 CCAAAGAGGGGTTCAAAGTTTAACATAGAAAT
786717 TAAGATATAT
Statistics
Matches: 135, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
164 3 0.02
165 121 0.90
166 11 0.08
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (165 bp):
GGAAAATGTTGAAAAATCTTCTTTTAGAGAACTACAATGCATCAGCTTGTCAGATAACTACGCAA
GCACCCTCAAATAATGTAGATTCCAAATAATAAAAGCTGTGACCTCAATCTAATACTGGGGCCCA
AAGAGGGGTTCAAAGTTTAACATAGAAATATAGAG
Found at i:788565 original size:89 final size:90
Alignment explanation
Indices: 788265--788593 Score: 525
Period size: 90 Copynumber: 3.6 Consensus size: 90
788255 CACACCATGA
* *
788265 AACTACATGTACCTGATGCATATCTTTGCTTATAAATAATTCAAGTCAGGATTTTTTTTACATAG
1 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTTTTTTTACATAG
788330 CTATAACATCCAATTCATGGTATTC
66 CTATAACATCCAATTCATGGTATTC
* *
788355 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAGGTGAGGATTTTTTTTACATAG
1 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTTTTTTTACATAG
*
788420 CTATATAACATCCAATTCTGACATGTTATTC
66 C--TATAACATCCAA-T-T--CATGGTATTC
*
788451 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGA-TTTTTTTACATAG
1 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTTTTTTTACATAG
*
788515 CTATAACACCCAATTCATGGTATTC
66 CTATAACATCCAATTCATGGTATTC
*
788540 AACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCAAGTCAGGATTT
1 AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTT
788594 AACATCCAAT
Statistics
Matches: 220, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
89 58 0.26
90 64 0.29
91 1 0.00
92 13 0.06
93 12 0.05
94 1 0.00
95 14 0.06
96 57 0.26
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.39
Consensus pattern (90 bp):
AACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTTTTTTTACATAG
CTATAACATCCAATTCATGGTATTC
Found at i:788641 original size:75 final size:75
Alignment explanation
Indices: 788518--788668 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
788508 TACATAGCTA
*
788518 TAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCA
1 TAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
788583 AGTCAGGATT
66 AGTCAGGATT
* *
788593 TAACATCCAATTCATGGTATTCAACTACATTTACCTGATGCACATCTTTGTTTATAAATAATTCA
1 TAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
788658 AGTCAGGATT
66 AGTCAGGATT
788668 T
1 T
788669 TTTTTACATT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (75 bp):
TAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
AGTCAGGATT
Found at i:788729 original size:165 final size:164
Alignment explanation
Indices: 788441--788758 Score: 582
Period size: 165 Copynumber: 1.9 Consensus size: 164
788431 CCAATTCTGA
*
788441 CATGTTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTT
1 CATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTT
788506 TTTACATAGCTATAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTT
66 TTTACATAGCTATAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTT
788571 ATAAATAATTCAAGTCAGGATTTAACATCCAATT
131 ATAAATAATTCAAGTCAGGATTTAACATCCAATT
* *
788605 CATGGTATTCAACTACATTTACCTGATGCACATCTTTGTTTATAAATAATTCAAGTCAGGATTTT
1 CATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGA-TTT
* *
788670 TTTTACATTGCTATAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTT
65 TTTTACATAGCTATAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTT
788735 TATAAATAATTCAAGTCAGGATTT
130 TATAAATAATTCAAGTCAGGATTT
788759 TTTTACATAG
Statistics
Matches: 148, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
164 58 0.39
165 90 0.61
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.39
Consensus pattern (164 bp):
CATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTT
TTTACATAGCTATAACACCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTT
ATAAATAATTCAAGTCAGGATTTAACATCCAATT
Found at i:788746 original size:90 final size:89
Alignment explanation
Indices: 788593--788796 Score: 372
Period size: 90 Copynumber: 2.3 Consensus size: 89
788583 AGTCAGGATT
*
788593 TAACATCCAATTCATGGTATTCAACTACATTTACCTGATGCACATCTTTGTTTATAAATAATTCA
1 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
*
788658 AGTCAGGATTTTTTTTACATTGCTA
66 AGTCAGGA-TTTTTTTACATAGCTA
*
788683 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCA
1 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
788748 AGTCAGGATTTTTTTACATAGCTA
66 AGTCAGGATTTTTTTACATAGCTA
788772 TAACATCCAATTCATGGTATTCAAC
1 TAACATCCAATTCATGGTATTCAAC
788797 ATTTGAATCC
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
89 40 0.36
90 71 0.64
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (89 bp):
TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
AGTCAGGATTTTTTTACATAGCTA
Found at i:788788 original size:254 final size:258
Alignment explanation
Indices: 788333--788796 Score: 810
Period size: 254 Copynumber: 1.8 Consensus size: 258
788323 TACATAGCTA
788333 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
1 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
* * *
788398 GGTGAGGATTTTTTTTACATAGCTATATAACATCCAATTCTGACATGTTATTCAACTACATGTAC
66 AGTCAGGATTTTTTTTACATAGC-ATATAACATCCAATTCT-ACATGGTATTCAACTACATGTAC
788463 CTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTTTTTACATAGCTATAACACCCAA
129 CTGATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTTTTTACATAGCTATAACACCCAA
788528 TTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCAAGTCAGGATT
194 TTCATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCAAGTCAGGATT
*
788593 TAACATCCAATTCATGGTATTCAACTACATTTACCTGATGCACATCTTTGTTTATAAATAATTCA
1 TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
*
788658 AGTCAGGATTTTTTTTACATTGC-TATAACATCCAA-T-T-CATGGTATTCAACTACATGTACCT
66 AGTCAGGATTTTTTTTACATAGCATATAACATCCAATTCTACATGGTATTCAACTACATGTACCT
* * *
788719 GATGCATATCTTTGTTTATAAATAATTCAAGTCAGGATTTTTTTACATAGCTATAACATCCAATT
131 GATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTTTTTACATAGCTATAACACCCAATT
788784 CATGGTATTCAAC
196 CATGGTATTCAAC
788797 ATTTGAATCC
Statistics
Matches: 196, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
254 98 0.50
256 1 0.01
257 1 0.01
258 12 0.06
260 84 0.43
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (258 bp):
TAACATCCAATTCATGGTATTCAACTACATGTACCTGATGCACATCTTTGTTTATAAATAATTCA
AGTCAGGATTTTTTTTACATAGCATATAACATCCAATTCTACATGGTATTCAACTACATGTACCT
GATGCACATCTTTGTTTATAAATAATTAAAGTCAGGATTTTTTTACATAGCTATAACACCCAATT
CATGGTATTCAACTACATGTACCTGATGCATATCTTTGTTTATAAATAATTCAAGTCAGGATT
Found at i:793173 original size:18 final size:18
Alignment explanation
Indices: 793150--793195 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
793140 CCTACTTCTG
* *
793150 GTAGGTGAATAAAGCTAT
1 GTAGGTAAATAAAGCTAC
*
793168 GTAGGTAAATTAAGCTAC
1 GTAGGTAAATAAAGCTAC
*
793186 GTAGCTAAAT
1 GTAGGTAAAT
793196 CTAGTGATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (18 bp):
GTAGGTAAATAAAGCTAC
Found at i:793702 original size:12 final size:10
Alignment explanation
Indices: 793606--793699 Score: 134
Period size: 10 Copynumber: 9.0 Consensus size: 10
793596 GCGTCGATTT
793606 ACCCAAATGG
1 ACCCAAATGG
793616 ACCCAAATGG
1 ACCCAAATGG
**
793626 ACCCAAATTA
1 ACCCAAATGG
793636 ACCCAAATGG
1 ACCCAAATGG
793646 ACCCAAATGG
1 ACCCAAATGG
793656 ACCCAAATGGCG
1 ACCCAAAT-G-G
793668 ACCCAAATGG
1 ACCCAAATGG
793678 ACCCAAATGGCG
1 ACCCAAAT-G-G
793690 ACCCAAATGG
1 ACCCAAATGG
793700 CGATTAAAGT
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
10 54 0.71
11 4 0.05
12 18 0.24
ACGTcount: A:0.39, C:0.31, G:0.19, T:0.11
Consensus pattern (10 bp):
ACCCAAATGG
Found at i:796342 original size:63 final size:63
Alignment explanation
Indices: 796243--796370 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
796233 GTTATATTCA
796243 CAGTAAGAAAACTCGGTAATAGTCCAATTTAAATTTCATAGTGAACACTATTTAATTAGAATT
1 CAGTAAGAAAACTCGGTAATAGTCCAATTTAAATTTCATAGTGAACACTATTTAATTAGAATT
796306 CAGTAAGAAAACTCGGTAATAGTCCAATTTAAATTTCATAGTGAACACTATTTAATTAGAATT
1 CAGTAAGAAAACTCGGTAATAGTCCAATTTAAATTTCATAGTGAACACTATTTAATTAGAATT
796369 CA
1 CA
796371 TGTACAATAC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.33
Consensus pattern (63 bp):
CAGTAAGAAAACTCGGTAATAGTCCAATTTAAATTTCATAGTGAACACTATTTAATTAGAATT
Found at i:797153 original size:68 final size:68
Alignment explanation
Indices: 797044--797170 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 68
797034 GCCCCATCAT
* * * ** * *
797044 GTTTAGGCACCAGCCTACATTTTTCTAAGTTAATCATAATTTTCATTTTATTTTTTAAATGAATA
1 GTTTAAGCACCAGCATACATTTGTAGAAGTTAATCATAATTTACATTTTATTATTTAAATGAATA
797109 ATG
66 ATG
*
797112 GTTTAAGCACCAGCATACATTTGTAGAAGTTAATTATAATTTACATTTTATTATTTAAA
1 GTTTAAGCACCAGCATACATTTGTAGAAGTTAATCATAATTTACATTTTATTATTTAAA
797171 ACTTCATTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 51 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (68 bp):
GTTTAAGCACCAGCATACATTTGTAGAAGTTAATCATAATTTACATTTTATTATTTAAATGAATA
ATG
Found at i:798880 original size:16 final size:16
Alignment explanation
Indices: 798859--798938 Score: 81
Period size: 16 Copynumber: 4.8 Consensus size: 16
798849 AACAACAGGT
798859 GCCTAAACATCTTGGG
1 GCCTAAACATCTTGGG
*
798875 GCCTAAACATCTTACCTGGC
1 GCCTAAACATC-T---TGGG
*
798895 GCCT-AACTGTCTTGGG
1 GCCTAAAC-ATCTTGGG
*
798911 GCCTAAACATGTTGGG
1 GCCTAAACATCTTGGG
798927 GCCTAAACATCT
1 GCCTAAACATCT
798939 GCAATTCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
16 35 0.67
17 4 0.08
19 4 0.08
20 9 0.17
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (16 bp):
GCCTAAACATCTTGGG
Found at i:799989 original size:18 final size:18
Alignment explanation
Indices: 799966--800012 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
799956 ACAATCACTA
* *
799966 GATTTAGCTACGTAGCTT
1 GATTTACCTACATAGCTT
799984 GATTTACCTACATAGCTT
1 GATTTACCTACATAGCTT
*
800002 TATTTACCTAC
1 GATTTACCTAC
800013 CTGAAGTAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (18 bp):
GATTTACCTACATAGCTT
Found at i:800570 original size:18 final size:18
Alignment explanation
Indices: 800547--800592 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
800537 CCTACTTCTG
* *
800547 GTAGGTGAATAAAGCTAT
1 GTAGGTAAATAAAGCTAC
*
800565 GTAGGTAAATCAAGCTAC
1 GTAGGTAAATAAAGCTAC
*
800583 GTAGCTAAAT
1 GTAGGTAAAT
800593 CTACCGGGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (18 bp):
GTAGGTAAATAAAGCTAC
Found at i:816906 original size:22 final size:22
Alignment explanation
Indices: 816879--816920 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
816869 GTATACTATA
*
816879 TATATTTTTACTATAAGATTCT
1 TATATTTATACTATAAGATTCT
816901 TATATTTATACTATAAGATT
1 TATATTTATACTATAAGATT
816921 ATGCTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (22 bp):
TATATTTATACTATAAGATTCT
Found at i:816932 original size:22 final size:22
Alignment explanation
Indices: 816887--816932 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
816877 TATATATTTT
* * *
816887 TACTATAAGATTCTTATATTTA
1 TACTATAAGATTATGATATATA
*
816909 TACTATAAGATTATGCTATATA
1 TACTATAAGATTATGATATATA
816931 TA
1 TA
816933 TGTCCACCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (22 bp):
TACTATAAGATTATGATATATA
Found at i:819320 original size:32 final size:32
Alignment explanation
Indices: 819284--819430 Score: 167
Period size: 32 Copynumber: 4.7 Consensus size: 32
819274 TTGATGCATA
819284 TTTTGTACAGTACCTATAGACTCT-ATAGATTT
1 TTTTGTACAGTACCTATAGACT-TGATAGATTT
*
819316 TTTTGTACAGTACCCATAGACTTGATAGATTT
1 TTTTGTACAGTACCTATAGACTTGATAGATTT
819348 TTTTGTACAGTA-CTCATAGACTTGATAGA-TT
1 TTTTGTACAGTACCT-ATAGACTTGATAGATTT
* * * **
819379 TTTTGGATAGTTCCTGCAGACTTGATAGA-TT
1 TTTTGTACAGTACCTATAGACTTGATAGATTT
* * *
819410 TTGTGTACAATACCTGTAGAC
1 TTTTGTACAGTACCTATAGAC
819431 ACCTTGAGAC
Statistics
Matches: 99, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
31 42 0.42
32 57 0.58
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (32 bp):
TTTTGTACAGTACCTATAGACTTGATAGATTT
Found at i:819353 original size:64 final size:62
Alignment explanation
Indices: 819284--819430 Score: 163
Period size: 63 Copynumber: 2.3 Consensus size: 62
819274 TTGATGCATA
* *
819284 TTTTGTACAGTACCTATAGACTCT-ATAGATTTTTTTGTACAGTACCCATAGACTTGATAGATTT
1 TTTTGTACAGTACCTATAGACT-TGATAGA-TTTTTTGGACAGTACCCACAGACTTGATAGA-TT
* * **
819348 TTTTGTACAGTA-CTCATAGACTTGATAGATTTTTTGGATAGTTCCTGCAGACTTGATAGATT
1 TTTTGTACAGTACCT-ATAGACTTGATAGATTTTTTGGACAGTACCCACAGACTTGATAGATT
* * *
819410 TTGTGTACAATACCTGTAGAC
1 TTTTGTACAGTACCTATAGAC
819431 ACCTTGAGAC
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
62 17 0.24
63 30 0.42
64 24 0.34
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (62 bp):
TTTTGTACAGTACCTATAGACTTGATAGATTTTTTGGACAGTACCCACAGACTTGATAGATT
Found at i:820347 original size:38 final size:39
Alignment explanation
Indices: 820248--821043 Score: 1145
Period size: 38 Copynumber: 20.6 Consensus size: 39
820238 CGGTGGGTCG
*
820248 CATGTAGTAGCCCTGTCACAGAGAGATAATGC--TGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * *
820285 CATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820324 CATGTAATAG-CCTGTCACAGAGAGACAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * *
820362 CATGTAATAGTCCTGTCACAGAGAGATATTGCTGTGATA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820401 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTCA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820439 CATGTAATAAGCCCTGTCACAGAGAGATAATGC--TGTTA
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * *
820477 CATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820516 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTCA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820554 CATGTAATAAGCCCTGTCACAGAGAGATAATGC--TGTTA
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * *
820592 CATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
820631 CATGTAATAG-CCTGTCACAGAGATACAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820669 CATGTAATAGTCCTGTCACAGAGAGATAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820708 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTCA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820746 CATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
820786 TATGTAATAAGCCCTGTCACAGATAGATAATGCTGTGTTA
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820826 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTCA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820864 CATGTAATAAGCCCTGTCACAGAGAGATAATGC--TGTTA
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
820902 CATGTAATAAGCCCTGTCGCAGAGAGATAATGCTGTGTTG
1 CATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820942 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTATTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * * *
820980 CATGCAATGGCCCTGTCACAGTGAGAGAATGCTGTGTTA
1 CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
821019 CATGTAATAGTCCTGTCACTGAGAG
1 CATGTAATAGCCCTGTCACAGAGAG
821044 TAAATGTAGC
Statistics
Matches: 691, Mismatches: 49, Indels: 36
0.89 0.06 0.05
Matches are distributed among these distances:
37 72 0.10
38 302 0.44
39 170 0.25
40 147 0.21
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (39 bp):
CATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
Found at i:820429 original size:21 final size:21
Alignment explanation
Indices: 820405--820469 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
820395 GTGATACATG
820405 TAATAGCCTGTCACAGAGAGA
1 TAATAGCCTGTCACAGAGAGA
* *
820426 TAAT-GCTGTGTCAC--A-TG-
1 TAATAGC-CTGTCACAGAGAGA
820443 TAATAAGCCCTGTCACAGAGAGA
1 TAAT-AG-CCTGTCACAGAGAGA
820466 TAAT
1 TAAT
820470 GCTGTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 8 0.25
20 3 0.09
21 11 0.34
22 1 0.03
23 4 0.12
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (21 bp):
TAATAGCCTGTCACAGAGAGA
Found at i:820435 original size:115 final size:116
Alignment explanation
Indices: 820248--821043 Score: 1152
Period size: 115 Copynumber: 6.9 Consensus size: 116
820238 CGGTGGGTCG
* * * *
820248 CATGTAGTAGCCCTGTCACAGAGAGATAATGCTGT-TACATGTAACAGTCCTGTCACAGAGAGAC
1 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTACATGTAATAGCCCTGTCACAGAGAGAT
*
820312 AATGCTGTGTTACATGTAAT-AG-CCTGTCACAGAGAGACAATGCTGTGTTA
65 AATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
*
820362 CATGTAATAGTCCTGTCACAGAGAGATATTGCTGTGATACATGTAATAG-CCTGTCACAGAGAGA
1 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTG-TACATGTAATAGCCCTGTCACAGAGAGA
*
820426 TAATGCTGTGTCACATGTAATAAGCCCTGTCACAGAGAGATAATGC--TGTTA
64 TAATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
820477 CATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTACATGTAATAG-CCTGTCACAGAGAGA
1 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTG-TACATGTAATAGCCCTGTCACAGAGAGA
*
820541 TAATGCTGTGTCACATGTAATAAGCCCTGTCACAGAGAGATAATGC--TGTTA
64 TAATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * *
820592 CATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTACATGTAATAG-CCTGTCACAGAGATA
1 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTG-TACATGTAATAGCCCTGTCACAGAGAGA
* *
820656 CAATGCTGTGTTACATGTAAT-AGTCCTGTCACAGAGAGATAATGCTGTGTTA
64 TAATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820708 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAAGCCCTGTCACAGAGAGA
1 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGT-ACATGTAAT-AGCCCTGTCACAGAGAGA
* *
820773 TAATGCTGTGTTATATGTAATAAGCCCTGTCACAGATAGATAATGCTGTGTTA
64 TAATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820826 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAAGCCCTGTCACAGAGAGA
1 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGT-ACATGTAAT-AGCCCTGTCACAGAGAGA
* *
820891 TAATGC--TGTTACATGTAATAAGCCCTGTCGCAGAGAGATAATGCTGTGTTG
64 TAATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * * * *
820942 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTATTACATGCAATGGCCCTGTCACAGTGAGAG
1 CATGTAATAGCCTGTCACAGAGAGATAATGCTGT-GTACATGTAATAGCCCTGTCACAGAGAGAT
* *
821007 AATGCTGTGTTACATGTAAT-AGTCCTGTCACTGAGAG
65 AATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAG
821044 TAAATGTAGC
Statistics
Matches: 635, Mismatches: 34, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
114 56 0.09
115 286 0.45
116 126 0.20
117 67 0.11
118 100 0.16
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (116 bp):
CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTACATGTAATAGCCCTGTCACAGAGAGATA
ATGCTGTGTTACATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTGTTA
Found at i:820544 original size:21 final size:21
Alignment explanation
Indices: 820520--820584 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
820510 GTGTTACATG
820520 TAATAGCCTGTCACAGAGAGA
1 TAATAGCCTGTCACAGAGAGA
* *
820541 TAAT-GCTGTGTCAC--A-TG-
1 TAATAGC-CTGTCACAGAGAGA
820558 TAATAAGCCCTGTCACAGAGAGA
1 TAAT-AG-CCTGTCACAGAGAGA
820581 TAAT
1 TAAT
820585 GCTGTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 8 0.25
20 3 0.09
21 11 0.34
22 1 0.03
23 4 0.12
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (21 bp):
TAATAGCCTGTCACAGAGAGA
Found at i:820609 original size:192 final size:189
Alignment explanation
Indices: 820248--821043 Score: 1150
Period size: 192 Copynumber: 4.1 Consensus size: 189
820238 CGGTGGGTCG
*
820248 CATGTAGTAGCCCTGTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGACA
1 CATGTAATAG-CCTGTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGACA
* * *
820313 ATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGACAATGCTGTGTTACATGTAATAGTCCTGT
65 ATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAGCCCTGT
* *
820378 CACAGAGAGATATTGCTGTGATACATGTAATAG-CCTGTCACAGAGAGATAATGCTGTGTCA
130 CACAGAGAGATAATGCTGT--TACATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
820439 CATGTAATAAGCCCTGTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGAC
1 CATGTAAT-AG-CCTGTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGAC
820504 AATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAAGCCCT
64 AATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAAT-AGCCCT
* * *
820569 GTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGACAATGCTGTGTTA
128 GTCACAGAGAGATAATGCTGTTACATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
* * * *
820631 CATGTAATAGCCTGTCACAGAGATACAATGCTGTGTTACATGTAATAGTCCTGTCACAGAGAGAT
1 CATGTAATAGCCTGTCACAGAGAGATAATGC--TGTTACATGTAACAGTCCTGTCACAGAGAGAC
820696 AATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAAGCCCT
64 AATGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAAT-AGCCCT
* *
820761 GTCACAGAGAGATAATGCTGTGTTATATGTAATAAGCCCTGTCACAGATAGATAATGCTGTGTTA
128 GTCACAGAGAGATAATGC--TGTTACATGTAAT-AGCCCTGTCACAGAGAGATAATGCTGTGTTA
* *
820826 CATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAAGCCCTGTCACAGAGAGA
1 CATGTAATAGCCTGTCACAGAGAGATAATGCTGT-T-ACATGTAA-CAGTCCTGTCACAGAGAGA
* * **
820891 TAATGC--TGTTACATGTAATAAGCCCTGTCGCAGAGAGATAATGCTGTGTTGCATGTAATAG-C
63 CAATGCTGTGTTACATGTAAT-AG-CCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAGCC
* * * *
820953 CTGTCACAGAGAGATAATGCTGTATTACATGCAATGGCCCTGTCACAGTGAGAGAATGCTGTGTT
126 CTGTCACAGAGAGATAATGCTG--TTACATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTT
821018 A
189 A
*
821019 CATGTAATAGTCCTGTCACTGAGAG
1 CATGTAATAG-CCTGTCACAGAGAG
821044 TAAATGTAGC
Statistics
Matches: 558, Mismatches: 31, Indels: 29
0.90 0.05 0.05
Matches are distributed among these distances:
190 19 0.03
191 20 0.04
192 261 0.47
193 65 0.12
194 68 0.12
195 69 0.12
196 56 0.10
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (189 bp):
CATGTAATAGCCTGTCACAGAGAGATAATGCTGTTACATGTAACAGTCCTGTCACAGAGAGACAA
TGCTGTGTTACATGTAATAGCCTGTCACAGAGAGATAATGCTGTGTCACATGTAATAGCCCTGTC
ACAGAGAGATAATGCTGTTACATGTAATAGCCCTGTCACAGAGAGATAATGCTGTGTTA
Found at i:820736 original size:21 final size:21
Alignment explanation
Indices: 820712--820776 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
820702 GTGTTACATG
820712 TAATAGCCTGTCACAGAGAGA
1 TAATAGCCTGTCACAGAGAGA
* *
820733 TAAT-GCTGTGTCAC--A-TG-
1 TAATAGC-CTGTCACAGAGAGA
820750 TAATAAGCCCTGTCACAGAGAGA
1 TAAT-AG-CCTGTCACAGAGAGA
820773 TAAT
1 TAAT
820777 GCTGTGTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 8 0.25
20 3 0.09
21 11 0.34
22 1 0.03
23 4 0.12
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (21 bp):
TAATAGCCTGTCACAGAGAGA
Found at i:820741 original size:19 final size:19
Alignment explanation
Indices: 820719--820781 Score: 51
Period size: 19 Copynumber: 3.2 Consensus size: 19
820709 ATGTAATAGC
820719 CTGTCACAGAGAGATAATG
1 CTGTCACAGAGAGATAATG
*
820738 CTGTGTCACATG-TA-ATAA-G
1 C--TGTCACA-GAGAGATAATG
820757 CCCTGTCACAGAGAGATAATG
1 --CTGTCACAGAGAGATAATG
820778 CTGT
1 CTGT
820782 GTTATATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
18 1 0.03
19 14 0.41
20 8 0.24
21 10 0.29
22 1 0.03
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (19 bp):
CTGTCACAGAGAGATAATG
Found at i:820854 original size:21 final size:21
Alignment explanation
Indices: 820830--820894 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
820820 GTGTTACATG
820830 TAATAGCCTGTCACAGAGAGA
1 TAATAGCCTGTCACAGAGAGA
* *
820851 TAAT-GCTGTGTCAC--A-TG-
1 TAATAGC-CTGTCACAGAGAGA
820868 TAATAAGCCCTGTCACAGAGAGA
1 TAAT-AG-CCTGTCACAGAGAGA
820891 TAAT
1 TAAT
820895 GCTGTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 8 0.25
20 3 0.09
21 11 0.34
22 1 0.03
23 4 0.12
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (21 bp):
TAATAGCCTGTCACAGAGAGA
Found at i:822474 original size:35 final size:35
Alignment explanation
Indices: 822424--822599 Score: 271
Period size: 35 Copynumber: 5.0 Consensus size: 35
822414 TAATAATTTC
* *
822424 TGTAAAATATCATTCAATCAAATACCTGGTAAATT
1 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
* *
822459 TGTAAATTATTATTCAATCAAATACCCGGTAAATA
1 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
* *
822494 TGTAAATTATTATTCAATCAAATACTCGGTAAATT
1 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
* * *
822529 TGTAAATTATAATTCAATCAAATTCCCAGTAAATT
1 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
822564 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
1 TGTAAATTATCATTCAATCAAATACCCGGTAAATT
822599 T
1 T
822600 AATATAATTC
Statistics
Matches: 128, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 128 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.36
Consensus pattern (35 bp):
TGTAAATTATCATTCAATCAAATACCCGGTAAATT
Found at i:825463 original size:19 final size:19
Alignment explanation
Indices: 825418--825469 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
825408 ACCAATCGCC
*
825418 CAAATGGGATATAATAGCC
1 CAAATGGGATATAATAGCA
***
825437 CGTTTGGGATATAATAGCA
1 CAAATGGGATATAATAGCA
825456 CAAATGGGATATAA
1 CAAATGGGATATAA
825470 AGTGCAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (19 bp):
CAAATGGGATATAATAGCA
Found at i:830052 original size:83 final size:87
Alignment explanation
Indices: 829949--830133 Score: 218
Period size: 90 Copynumber: 2.1 Consensus size: 87
829939 TGGTCCGCAC
** * *
829949 TCGGAGATTTGTCCCAAAAAAATATCCGATAGAA-T-T-TTTTGATATAAATC-A-TGACATATA
1 TCGGAGATTTGTCAAAAAAAAATATCCGATAGAATTATGTTTTGAAAAAAATCTACT-ACATATA
*
830009 TTGTTAGTGTTTGTTCGTACAAA
65 TTGTTAGTGTTTGTTCGCACAAA
* *
830032 TCGGAGATTTGTCAAAAAAAAATATCTGATATAATTTATGTTTTGAAAAAAATCTTTACTACATA
1 TCGGAGATTTGTCAAAAAAAAATATCCGATAGAA-TTATGTTTTGAAAAAAATC--TACTACATA
830097 TATTGTTAGTGTTTGTTCGCACAAA
63 TATTGTTAGTGTTTGTTCGCACAAA
* *
830122 TTGGCGATTTGT
1 TCGGAGATTTGT
830134 AAGAACAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
83 30 0.35
85 1 0.01
86 1 0.01
87 12 0.14
90 40 0.47
91 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (87 bp):
TCGGAGATTTGTCAAAAAAAAATATCCGATAGAATTATGTTTTGAAAAAAATCTACTACATATAT
TGTTAGTGTTTGTTCGCACAAA
Found at i:830897 original size:90 final size:83
Alignment explanation
Indices: 830739--830923 Score: 228
Period size: 90 Copynumber: 2.1 Consensus size: 83
830729 TGGTCCGCAC
* *
830739 TCGGAGATTTGTCAAAAAAAAATATCTGATAGAATTTTTTGATATAAATCATGACATATATTGTT
1 TCGGAGATTTGTCAAAAAAAAATATCTGATAGAATTTTTTGAAAAAAATCATGACATATATTGTT
*
830804 AGTGTTTGTTCGTACAAA
66 AGTGTTTGTTCGCACAAA
* *
830822 TCGGAGATTTGTCCAAAAAAAATATCTGATATAATTTATGTTTTGAAAAAAATCTTTACT-ACAT
1 TCGGAGATTTGTCAAAAAAAAATATCTGATAGAA--T-T-TTTTGAAAAAAATC---A-TGACAT
830886 ATATTGTTAGTGTTTGTTCGCACAAA
58 ATATTGTTAGTGTTTGTTCGCACAAA
* *
830912 TTGGCGATTTGT
1 TCGGAGATTTGT
830924 AAGAACAAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
83 32 0.37
85 1 0.01
86 1 0.01
87 12 0.14
90 40 0.46
91 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (83 bp):
TCGGAGATTTGTCAAAAAAAAATATCTGATAGAATTTTTTGAAAAAAATCATGACATATATTGTT
AGTGTTTGTTCGCACAAA
Found at i:836833 original size:18 final size:18
Alignment explanation
Indices: 836812--836855 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
836802 TGGAGGCTAT
836812 GGAGGATATGGAGGGGCG
1 GGAGGATATGGAGGGGCG
836830 GGAGGATATGGAGGGGCG
1 GGAGGATATGGAGGGGCG
836848 GGAGGATA
1 GGAGGATA
836856 CGGTGCCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.25, C:0.05, G:0.59, T:0.11
Consensus pattern (18 bp):
GGAGGATATGGAGGGGCG
Found at i:846579 original size:40 final size:40
Alignment explanation
Indices: 846489--846815 Score: 370
Period size: 40 Copynumber: 8.2 Consensus size: 40
846479 GTGTTTACGT
* * * * *
846489 TAACATGAGATTACTTGGTGATATACTCCACGACTTAG-C
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
* * **
846528 TAACATAAGATTAGTTAGTGACACACTCCACGACAAAGCC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
* * *
846568 TAACATAAGATTAGTTGGTGATTATACACCACAACTTAGCC
1 TAACATAAGATTAGTTAGTGA-CATACACCACGACTTAGCC
* *
846609 TAACATATGACTAGTTAGTGACATACACCACGACTTAGCC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
* ** * *
846649 AAACATAAGATTAGAGAGCGACATACTCCACGACTTAGCC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
* *
846689 TCACATAAGATTAGTTAGTGACATACGCCACGACTT-GACC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAG-CC
* * * *
846729 TAACAAAAGATTAGTGAGCGATATACACCACGACTTAGCC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
* *
846769 TATCATAAGACTAGTTAGTGACATACACCACGACTTAGCC
1 TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
*
846809 AAACATA
1 TAACATA
846816 TATAAGATAG
Statistics
Matches: 238, Mismatches: 46, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
39 32 0.13
40 174 0.73
41 32 0.13
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (40 bp):
TAACATAAGATTAGTTAGTGACATACACCACGACTTAGCC
Found at i:852083 original size:130 final size:131
Alignment explanation
Indices: 851839--852093 Score: 318
Period size: 130 Copynumber: 2.0 Consensus size: 131
851829 TTTTACAAAA
* * * * *
851839 TAACGTCACTTCTGACGTCATATACTGCAAAGTATTAAATATTCTAAAAATATGCATCACACATT
1 TAACGTCACTTCTGACGCCAAATACTGCAAAGTATCAAATATTCTAAAAATATACATCACAAATT
* *
851904 AATGTACCTGAAATACTTGTAAAAACTACAAATTATAAGGGCCAAATTAGAGTGATATCAATTAA
66 AATGTACCTGAAACACTTGTAAAAACTACAAATTATAAGGGCCAAATTAGACTGATATCAATTAA
851969 T
131 T
* *
851970 TAACGTCACTTCTGACGCCAAATACTGCCAAAGTATCAACTA-T-TAAAAA-ATACATTACAAAT
1 TAACGTCACTTCTGACGCCAAATACTG-CAAAGTATCAAATATTCTAAAAATATACATCACAAAT
*** * * * * *
852032 TAATGTACCTTTTTACACTTTTAAAAATTGCGAATTATATGGGCCAAATTAGACTGATATCA
65 TAATGTACC-TGAAACACTTGTAAAAACTACAAATTATAAGGGCCAAATTAGACTGATATCA
852094 TATACCTAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
129 19 0.18
130 48 0.46
131 26 0.25
132 12 0.11
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (131 bp):
TAACGTCACTTCTGACGCCAAATACTGCAAAGTATCAAATATTCTAAAAATATACATCACAAATT
AATGTACCTGAAACACTTGTAAAAACTACAAATTATAAGGGCCAAATTAGACTGATATCAATTAA
T
Found at i:852228 original size:89 final size:90
Alignment explanation
Indices: 852125--852306 Score: 330
Period size: 89 Copynumber: 2.0 Consensus size: 90
852115 ATATATACGA
*
852125 GTACAAAAAAAGAAAATAAATGTATATTATATTTCCTTTCACCAATGACGTCGGCCTATGTATTT
1 GTACAAAAAAAGAAAATAAATGTAAATTATATTTCCTTTCACCAATGACGTCGGCCTATGTATTT
852190 CCTCTAAGGGCTATTTTTAGTTCGT
66 CCTCTAAGGGCTATTTTTAGTTCGT
* *
852215 GTAC-AAAAAAGAAAATAAATGTAAATTGTATTTCCTTTCACCGATGACGTCGGCCTATGTATTT
1 GTACAAAAAAAGAAAATAAATGTAAATTATATTTCCTTTCACCAATGACGTCGGCCTATGTATTT
852279 CCTCTAAGGGCTATTTTTAGTTCGT
66 CCTCTAAGGGCTATTTTTAGTTCGT
852304 GTA
1 GTA
852307 AGTGTTATTC
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
89 85 0.96
90 4 0.04
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (90 bp):
GTACAAAAAAAGAAAATAAATGTAAATTATATTTCCTTTCACCAATGACGTCGGCCTATGTATTT
CCTCTAAGGGCTATTTTTAGTTCGT
Found at i:855342 original size:2 final size:2
Alignment explanation
Indices: 855335--855399 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
855325 TTACTTTAAC
855335 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
855377 AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG A
855400 ATCGGGTCAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:856621 original size:2 final size:2
Alignment explanation
Indices: 856614--856708 Score: 145
Period size: 2 Copynumber: 47.5 Consensus size: 2
856604 AACATGGGTA
856614 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
856656 AG AG AG AG AG AG AT AT TG AG AG AG AG AG AG AG AG AG AG AG AT
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
856698 TG AG AG AG AG A
1 AG AG AG AG AG A
856709 TTGAGATTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 85 1.00
ACGTcount: A:0.48, C:0.00, G:0.46, T:0.05
Consensus pattern (2 bp):
AG
Found at i:861104 original size:1 final size:1
Alignment explanation
Indices: 861098--861122 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
861088 CCCTCTCCCG
861098 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
861123 GAGTAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:866476 original size:13 final size:13
Alignment explanation
Indices: 866458--866482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866448 GGCTGAAGCT
866458 AGCAGCCACTAAC
1 AGCAGCCACTAAC
866471 AGCAGCCACTAA
1 AGCAGCCACTAA
866483 GCCCGTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.36, G:0.16, T:0.08
Consensus pattern (13 bp):
AGCAGCCACTAAC
Found at i:867983 original size:13 final size:13
Alignment explanation
Indices: 867965--867989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
867955 TTCTACGGGC
867965 TTAGTGGCTGCTG
1 TTAGTGGCTGCTG
867978 TTAGTGGCTGCT
1 TTAGTGGCTGCT
867990 AGCTTCAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.36, T:0.40
Consensus pattern (13 bp):
TTAGTGGCTGCTG
Found at i:871472 original size:31 final size:31
Alignment explanation
Indices: 871434--871500 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
871424 TTCCCCCCCC
*
871434 CCCCCGGAAGAATGGCTATATAGCAGTTCTT
1 CCCCCGGAAAAATGGCTATATAGCAGTTCTT
*
871465 CCCCCGGAAAAATGGCTATATAGCAGTTTTT
1 CCCCCGGAAAAATGGCTATATAGCAGTTCTT
871496 CCCCC
1 CCCCC
871501 ACGGAAATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (31 bp):
CCCCCGGAAAAATGGCTATATAGCAGTTCTT
Found at i:871517 original size:33 final size:31
Alignment explanation
Indices: 871434--871520 Score: 102
Period size: 31 Copynumber: 2.7 Consensus size: 31
871424 TTCCCCCCCC
* *
871434 CCCCCGGAAGAATGGCTATATAGCAGTTCTT
1 CCCCCGGAAAAATGACTATATAGCAGTTCTT
* *
871465 CCCCCGGAAAAATGGCTATATAGCAGTTTTT
1 CCCCCGGAAAAATGACTATATAGCAGTTCTT
**
871496 CCCCCACGGAAATCTGACTATATAG
1 -CCCC-CGGAAAAATGACTATATAG
871521 TGGGCTTTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
31 29 0.59
32 4 0.08
33 16 0.33
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (31 bp):
CCCCCGGAAAAATGACTATATAGCAGTTCTT
Found at i:874849 original size:15 final size:15
Alignment explanation
Indices: 874829--874860 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
874819 TCATGTCGAC
874829 GTGTAGTTACATGAT
1 GTGTAGTTACATGAT
874844 GTGTAGTTACATGAT
1 GTGTAGTTACATGAT
874859 GT
1 GT
874861 TTTAGCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.28, T:0.41
Consensus pattern (15 bp):
GTGTAGTTACATGAT
Found at i:882422 original size:358 final size:357
Alignment explanation
Indices: 881765--882479 Score: 1331
Period size: 358 Copynumber: 2.0 Consensus size: 357
881755 GCAATTCATA
881765 GTAACATTGGTGATTTACAAGCAGCCAAGACTTTGTTCTCAGCATAGCCTGCTGGTTGTATGATT
1 GTAACATTGGTGATTTACAAGCAGCCAAGACTTTGTTCTCAGCATAGCCTGCTGGTTGTATGATT
* *
881830 TCAGCATACTATGATGTTTGTTTAATAATGTTTTGCTCAAGGACAGCATAATATATTCTCACATA
66 TCAGCATACTATGATATCTGTTTAATAATGTTTTGCTCAAGGACAGCATAATATATTCTCACATA
* *
881895 AGACATTGCTCAAAGCAACATACAAAAGAGAACTATACTCTTGAAAAATGAGAAAGAACAATTTA
131 AGACATTGCTCAAAGCAACATACAAAAGAGAACTATACTCTTGAAAAAAGAGAAAGAACAATCTA
881960 TTCCTTTAAATATGTGGTTTTATATGCACATTGTTTCTGATTTAAAGCTGTTATGCACAAGGACA
196 TTCCTTTAAATATGTGGTTTTATATGCACATTGTTTCTGATTTAAAGCTGTTATGCACAAGGACA
*
882025 TCATATGGTCTATTAAAGTACAACACACAATGAAACATTCAAAAAAGAGTTGTGTTCAAAACAAT
261 GCATATGGTCTATTAAAGTACAACACACAATGAAACATTCAAAAAAGAGTTGTGTTCAAAACAAT
882090 AAGGAAACAGCTAGATCCTTTGGTCTCATGTT
326 AAGGAAACAGCTAGATCCTTTGGTCTCATGTT
882122 NGTAACATTGGTGATTTACAAGCAGCCAAGACTTTGTTCTCAGCATAGCCTGCTGGTTGTATGAT
1 -GTAACATTGGTGATTTACAAGCAGCCAAGACTTTGTTCTCAGCATAGCCTGCTGGTTGTATGAT
* * **
882187 TTCAGCATACTATGATATCTGTTTAATTATGTTTTGCTCAAGGACAGCATAATTTATTCTGTCAT
65 TTCAGCATACTATGATATCTGTTTAATAATGTTTTGCTCAAGGACAGCATAATATATTCTCACAT
*
882252 AAGACATTGCTCAAAGCAACATACAAAAGAGAACTATACTCTTTAAAAAAGAGAAAGAACAATCT
130 AAGACATTGCTCAAAGCAACATACAAAAGAGAACTATACTCTTGAAAAAAGAGAAAGAACAATCT
882317 ATTCCTTTAAATATGTGGTTTTATATGCACATTGTTTCTGATTTAAAGCTGTTATGCACAAGGAC
195 ATTCCTTTAAATATGTGGTTTTATATGCACATTGTTTCTGATTTAAAGCTGTTATGCACAAGGAC
882382 AGCATATGGTCTATTAAAGTACAACACACAATGAAACATTCAAAAAAGAGTTGTGTTCAAAACAA
260 AGCATATGGTCTATTAAAGTACAACACACAATGAAACATTCAAAAAAGAGTTGTGTTCAAAACAA
882447 TAAGGAAACAGCTAGATCCTTTGGTCTCATGTT
325 TAAGGAAACAGCTAGATCCTTTGGTCTCATGTT
882480 AACTTACATA
Statistics
Matches: 347, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
358 347 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (357 bp):
GTAACATTGGTGATTTACAAGCAGCCAAGACTTTGTTCTCAGCATAGCCTGCTGGTTGTATGATT
TCAGCATACTATGATATCTGTTTAATAATGTTTTGCTCAAGGACAGCATAATATATTCTCACATA
AGACATTGCTCAAAGCAACATACAAAAGAGAACTATACTCTTGAAAAAAGAGAAAGAACAATCTA
TTCCTTTAAATATGTGGTTTTATATGCACATTGTTTCTGATTTAAAGCTGTTATGCACAAGGACA
GCATATGGTCTATTAAAGTACAACACACAATGAAACATTCAAAAAAGAGTTGTGTTCAAAACAAT
AAGGAAACAGCTAGATCCTTTGGTCTCATGTT
Found at i:885793 original size:4 final size:4
Alignment explanation
Indices: 885784--885809 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
885774 GTTACCCTGT
885784 TCCG TCCG TCCG TCCG TCCG TCCG TC
1 TCCG TCCG TCCG TCCG TCCG TCCG TC
885810 TGTCACGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.23, T:0.27
Consensus pattern (4 bp):
TCCG
Found at i:886732 original size:168 final size:166
Alignment explanation
Indices: 886365--886730 Score: 517
Period size: 169 Copynumber: 2.2 Consensus size: 166
886355 GGGCTGTCCT
* *
886365 ATAGATGTGCAATAAGGTTTTAAAAATTTAAATTTCATCCAAGGAGTCAAATAGTAGCAGAAAAT
1 ATAGATGTGCAGTAAGGTTTTAAAAATTTAAATTTCATCCAAGGAGTCAAAAAGTAGCAGAAAAT
* *
886430 TGACGTTTATCACGAAAATAAAAACATAGATCCAAGAGCTCCTCTTAAGATTTAATGGATAGACA
66 TGACGTTTATCACGAAAATAAAAACAAAGATCCAAGAACTCCTCTTAAGATTTAATGGATAGACA
* *
886495 CATCATATCTTGTAATATGATAGGGATAGGGACTGTTCT
131 CATCATATCTTGGAATATGATAGGGA-A--GACTGTTCC
*
886534 ATAGATGTGCAGTAAGGTTTTAAAAATTTAAATTTCATCCAGGGAGTCAAAAAGTAGCAGAAAAT
1 ATAGATGTGCAGTAAGGTTTTAAAAATTTAAATTTCATCCAAGGAGTCAAAAAGTAGCAGAAAAT
*** * * *
886599 TGACGTTTATCACTTCAA-AAAAACAAAGATCCTAGAACTCCTTTTATGATTTAATGGATAGACA
66 TGACGTTTATCACGAAAATAAAAACAAAGATCCAAGAACTCCTCTTAAGATTTAATGGATAGACA
*
886663 CATCATATCTTGGGATATGATA-GG-A-ACTGTTCC
131 CATCATATCTTGGAATATGATAGGGAAGACTGTTCC
* *
886696 ATAGATGTGCATTACGGTTTTGAAAAA-TTAAATTT
1 ATAGATGTGCAGTAAGGTTTT-AAAAATTTAAATTT
886731 AACCCTGAGG
Statistics
Matches: 180, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
162 34 0.19
163 5 0.03
165 1 0.01
167 2 0.01
168 61 0.34
169 77 0.43
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (166 bp):
ATAGATGTGCAGTAAGGTTTTAAAAATTTAAATTTCATCCAAGGAGTCAAAAAGTAGCAGAAAAT
TGACGTTTATCACGAAAATAAAAACAAAGATCCAAGAACTCCTCTTAAGATTTAATGGATAGACA
CATCATATCTTGGAATATGATAGGGAAGACTGTTCC
Found at i:895557 original size:2 final size:2
Alignment explanation
Indices: 895550--895587 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
895540 TCTGGTAAAG
895550 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
895588 GCGCCAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:898646 original size:58 final size:59
Alignment explanation
Indices: 898553--898663 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 59
898543 ATTAAGATAT
* * *
898553 AAGAATGGTACAGCCAAAGAATCTTAAGATTTTCTTCCTTTTAACCAT-TTCAGATTCA
1 AAGAATGGTACAGCCAAAGAAACTCAAGATTTTCTTCCTTATAACCATGTTCAGATTCA
** * *
898611 AAGAATGGTACAGCGGAAGAAACTCAA-TTTGTTCTTTCTTATAACCATGTTCA
1 AAGAATGGTACAGCCAAAGAAACTCAAGATT-TTCTTCCTTATAACCATGTTCA
898664 TCTTGACTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
57 2 0.05
58 38 0.86
59 4 0.09
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (59 bp):
AAGAATGGTACAGCCAAAGAAACTCAAGATTTTCTTCCTTATAACCATGTTCAGATTCA
Found at i:900163 original size:4 final size:4
Alignment explanation
Indices: 900148--900197 Score: 66
Period size: 4 Copynumber: 12.8 Consensus size: 4
900138 ATCACCCGTT
* * *
900148 GTCC GT-C GTCC GTCC GTCC GTCC GTCT GTCC GTCC GTCT GTCT GTCC
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC
900195 GTC
1 GTC
900198 TGTAAACTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.00, C:0.42, G:0.26, T:0.32
Consensus pattern (4 bp):
GTCC
Found at i:900198 original size:12 final size:12
Alignment explanation
Indices: 900154--900200 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
900144 CGTTGTCCGT
*
900154 CGTCCGTCCGTC
1 CGTCCGTCTGTC
900166 CGTCCGTCTGTC
1 CGTCCGTCTGTC
900178 CGTCCGTCTGTC
1 CGTCCGTCTGTC
*
900190 TGTCCGTCTGT
1 CGTCCGTCTGT
900201 AAACTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.00, C:0.40, G:0.26, T:0.34
Consensus pattern (12 bp):
CGTCCGTCTGTC
Found at i:902438 original size:289 final size:290
Alignment explanation
Indices: 901912--902489 Score: 1036
Period size: 289 Copynumber: 2.0 Consensus size: 290
901902 AATAGAACCA
901912 TGCAGTTTATCGGCTCAAGTTAAGGAACATCTAAGGTAACTAAATTTAATATTATGATAATATTC
1 TGCAGTTTATCGGCTCAAGTTAAGGAACATCTAAGGTAACTAAATTTAATATTATGATAATATTC
* *
901977 AATATTTAGGGTAGGAATTGAAGGCACAATTTTTTTTATCAATGATGTGAGATGATCAGAATATG
66 AATATTTAGGGTAGGAATTAAAGGCACAATGTTTTTTATCAATGATGTGAGATGATCAGAATATG
902042 TCATGGCAAAATGATATAATTATCCTCAATGCAGCTTTATTAAATACTACCTTCATATGTTTGTA
131 TCATGGCAAAATGATATAATTATCCTCAATGCAGCTTTATTAAATACTACCTTCATATGTTTGTA
* *
902107 TGATAAATCATCGGCATGATATGCTGATAATATTAAATCAGAAGCTGTGGGTCTTGCACGGATCT
196 TGATAAATCATCGGCATAATATGCTGATAATATTAAATCAGAAGCTGTGGGTCTTACACGGATCT
902172 AAAGAAGGTCGGAAATATCCAGACCCCCCC
261 AAAGAAGGTCGGAAATATCCAGACCCCCCC
*
902202 NTGCAGTTTATCGGCTCAAGTTAAGGAACATCTAAGGTAACTGAATTTAATATTATGATAATATT
1 -TGCAGTTTATCGGCTCAAGTTAAGGAACATCTAAGGTAACTAAATTTAATATTATGATAATATT
902267 CAATATTTAGGGTAGGAATTAAAGGCAC-A-GTTTTTTATCAATGATGTGAGATGATCAGAATAT
65 CAATATTTAGGGTAGGAATTAAAGGCACAATGTTTTTTATCAATGATGTGAGATGATCAGAATAT
* *
902330 GTCATGGCAAAATGATATAATTATCCTCAATGCAGCTTTATTAAATACT-TCTCTCGTATGTTTG
130 GTCATGGCAAAATGATATAATTATCCTCAATGCAGCTTTATTAAATACTACCT-TCATATGTTTG
*
902394 TATGATAAATCATCGGCATAATATGCTGATAATATTAGATCAGAAGCTGTGGGTCTTACACGGAT
194 TATGATAAATCATCGGCATAATATGCTGATAATATTAAATCAGAAGCTGTGGGTCTTACACGGAT
*
902459 CTAAAGAAGGTCGGATATATCCAGACCCCCC
259 CTAAAGAAGGTCGGAAATATCCAGACCCCCC
902490 GCGCCCCTGG
Statistics
Matches: 277, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
288 2 0.01
289 184 0.66
290 1 0.00
291 90 0.32
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (290 bp):
TGCAGTTTATCGGCTCAAGTTAAGGAACATCTAAGGTAACTAAATTTAATATTATGATAATATTC
AATATTTAGGGTAGGAATTAAAGGCACAATGTTTTTTATCAATGATGTGAGATGATCAGAATATG
TCATGGCAAAATGATATAATTATCCTCAATGCAGCTTTATTAAATACTACCTTCATATGTTTGTA
TGATAAATCATCGGCATAATATGCTGATAATATTAAATCAGAAGCTGTGGGTCTTACACGGATCT
AAAGAAGGTCGGAAATATCCAGACCCCCCC
Found at i:904984 original size:2 final size:2
Alignment explanation
Indices: 904977--905022 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
904967 TTACTTATTG
* * *
904977 TC TC TC TC TC TG TC TC TG TC TC TC TC TG TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
905019 TC TC
1 TC TC
905023 GTTCGTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.43, G:0.07, T:0.50
Consensus pattern (2 bp):
TC
Found at i:905000 original size:16 final size:16
Alignment explanation
Indices: 904977--905019 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
904967 TTACTTATTG
904977 TCTCTCTCTCTGTCTC
1 TCTCTCTCTCTGTCTC
*
904993 TGTCTCTCTCTGTCTC
1 TCTCTCTCTCTGTCTC
905009 TCTCTCTCTCT
1 TCTCTCTCTCT
905020 CTCGTTCGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.00, C:0.42, G:0.07, T:0.51
Consensus pattern (16 bp):
TCTCTCTCTCTGTCTC
Found at i:905797 original size:27 final size:27
Alignment explanation
Indices: 905748--905799 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
905738 CAAAGTAATG
* *
905748 GTAATGGTAATGCATTACTTTACTTAT
1 GTAATGGTAATGCAATACATTACTTAT
* *
905775 GTAATGGTAATGTAATGCATTACTT
1 GTAATGGTAATGCAATACATTACTT
905800 CAAGAAAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (27 bp):
GTAATGGTAATGCAATACATTACTTAT
Found at i:907143 original size:21 final size:21
Alignment explanation
Indices: 907117--907158 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
907107 AGGGGAATAA
907117 AACTGACTTCTTTGTTAGCGT
1 AACTGACTTCTTTGTTAGCGT
907138 AACTGACTTCTTTGTTAGCGT
1 AACTGACTTCTTTGTTAGCGT
907159 GATTTTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (21 bp):
AACTGACTTCTTTGTTAGCGT
Found at i:908190 original size:2 final size:2
Alignment explanation
Indices: 908183--908234 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
908173 GATGGCTGAA
908183 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
908225 CT CT CT CT CT
1 CT CT CT CT CT
908235 GCCAATATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:912339 original size:168 final size:167
Alignment explanation
Indices: 912061--912395 Score: 652
Period size: 168 Copynumber: 2.0 Consensus size: 167
912051 NNNNNGGGGG
*
912061 GCACGGATCAGGATTCAAAAACGATGCTACTTGCCTGCAAGGGAAATAACTCTATACCCGTAGGA
1 GCACGGATCAGGATTCAAAAACGATGCTACGTGCCTGCAAGGGAAATAACTCTATACCCGTAGGA
912126 GGTTTTTATTCACACAGTCAAATGCCCGAATGATTTTTGATGTTCTTTAACATGACTGCATGTGC
66 GGTTTTTATTCACACAGTCAAATGCCCGAATGATTTTTGATGTTCTTTAACATGACTGCATGTGC
912191 AATAGGTGAGATTTGAAGCCTTCGTTGATTTTTCACC
131 AATAGGTGAGATTTGAAGCCTTCGTTGATTTTTCACC
912228 NGCACGGATCAGGATTCAAAAACGATGCTACGTGCCTGCAAGGGAAATAACTCTATACCCGTAGG
1 -GCACGGATCAGGATTCAAAAACGATGCTACGTGCCTGCAAGGGAAATAACTCTATACCCGTAGG
912293 AGGTTTTTATTCACACAGTCAAATGCCCGAATGATTTTTGATGTTCTTTAACATGACTGCATGTG
65 AGGTTTTTATTCACACAGTCAAATGCCCGAATGATTTTTGATGTTCTTTAACATGACTGCATGTG
912358 CAATAGGTGAGATTTGAAGCCTTCGTTGATTTTTCACC
130 CAATAGGTGAGATTTGAAGCCTTCGTTGATTTTTCACC
912396 ATTTGCTCCA
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 166 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (167 bp):
GCACGGATCAGGATTCAAAAACGATGCTACGTGCCTGCAAGGGAAATAACTCTATACCCGTAGGA
GGTTTTTATTCACACAGTCAAATGCCCGAATGATTTTTGATGTTCTTTAACATGACTGCATGTGC
AATAGGTGAGATTTGAAGCCTTCGTTGATTTTTCACC
Found at i:913745 original size:89 final size:89
Alignment explanation
Indices: 913594--913759 Score: 307
Period size: 89 Copynumber: 1.9 Consensus size: 89
913584 CGTATCATTA
*
913594 GATTTTCCGGTGTCAACCGTGGAAAATATTCCGTAGTAGAACCTAGGGGTTGATCCGTGAATGTG
1 GATTTTCCGGTGTCAACCGTGGAAAATATTCCGTAGTAGAACCTAGGAGTTGATCCGTGAATGTG
913659 TGACTGGGGCATTTTCGATTATTT
66 TGACTGGGGCATTTTCGATTATTT
913683 GATTTTCCGGTGTCAACCGTGGAAAATATTCCGTAGTAGAACCGT-GGAGTTGATCCGTGAATGT
1 GATTTTCCGGTGTCAACCGTGGAAAATATTCCGTAGTAGAACC-TAGGAGTTGATCCGTGAATGT
913747 GTGACTGGGGCAT
65 GTGACTGGGGCAT
913760 AAAAAACTAA
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
89 74 0.99
90 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (89 bp):
GATTTTCCGGTGTCAACCGTGGAAAATATTCCGTAGTAGAACCTAGGAGTTGATCCGTGAATGTG
TGACTGGGGCATTTTCGATTATTT
Found at i:917665 original size:2 final size:2
Alignment explanation
Indices: 917654--917695 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
917644 GAGAAGAGTA
917654 AG AG -G AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
917695 A
1 A
917696 TAAATTAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:925353 original size:2 final size:2
Alignment explanation
Indices: 925346--925388 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
925336 AAATTTGAGC
925346 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
925388 G
1 G
925389 GTATCAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:929752 original size:17 final size:17
Alignment explanation
Indices: 929730--929767 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
929720 CTTTTTAATA
929730 TATGAAACTGGAAGTTT
1 TATGAAACTGGAAGTTT
929747 TATGAAACTGGAAGTTT
1 TATGAAACTGGAAGTTT
929764 TATG
1 TATG
929768 TTATTGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (17 bp):
TATGAAACTGGAAGTTT
Found at i:934053 original size:40 final size:40
Alignment explanation
Indices: 934009--935092 Score: 907
Period size: 40 Copynumber: 28.1 Consensus size: 40
933999 CACATCATGT
* *
934009 ATCATCATGC-TACCTTCTGTACAGTGAACTCATGTAAATG
1 ATCATCATGCTTA-CTACTGTACAGTGAACTCATGTAAGTG
* *
934049 ATCATCATGCTTACTACTGTACAGTGTACTCATGTAAATG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * * *
934089 ATCATCATGCTTACTTCTATAC---GCA-TCATGAAAGTT
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * *
934125 ATCATCATGCATACTACTATACA---CA-TCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * *
934161 ATCATCATGCTTACTTCTATACA---CA-TCATGTTAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
** * * *
934197 ATCATCATGCTTACTAC-CAACA---CA-GCATGTAAGTA
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * *
934232 ATCATCATGCTTACTACTGTACAGTAAACTAATGTATGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* *
934272 ATCATCATGCTTACTACTATACA---CA-TCA--T--GT-
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* *
934303 ATCATCATG-TATACTTCTGTACAGTGTACTCATGTAAGTG
1 ATCATCATGCT-TACTACTGTACAGTGAACTCATGTAAGTG
* **
934343 ATCATCATGCTTACTTCTGTACAGTGTATGTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTG-AACTCATGTAAGTG
* * * *
934384 ATCATCATGCTTACTTCTATACA--CAA--CATGTAAGTT
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
****
934420 ATCATCATGCTTACTACTGTACAGTCTTTGTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGT-GAACTCATGTAAGTG
* * * * * * *
934461 ATCTTCATGCTAACTATTGTACAATGTACTCATATAAATG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * *
934501 ATCATCATGCATACTTCTGTACAGTGTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* **
934541 ATCATCATGCTTACTACTGCACAGTCTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * * *
934581 ATCATCATGCTAACTACTGTACAATGTACTCATATAAATG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
*
934621 ATCATCATGC--A-TACT-T-C--TGTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* ** **
934654 ATTATCATGCTTACTTTTGTACAGTCTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* *
934694 ATTATCATGCTTACTACTGTACAGTGAACTCATGTAAGAG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* *
934734 ATCATCGTGCTTACTACTATACAGTGAACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* **
934774 ATCATCATGCTTACTACTGTACAGTTTATGTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAG-TGAACTCATGTAAGTG
934815 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * ** *
934855 ATCATCATGCATACTTCAGTACAGTGTATGTCATATAAGTG
1 ATCATCATGCTTACTACTGTACAGTG-AACTCATGTAAGTG
* *
934896 AACATCATGCTTACTACAGTACAGTGAACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * * ** *
934936 ATCATCATTCATA-AACCAGTACAGTGTATGTCATGTAAGTA
1 ATCATCATGCTTACTA-CTGTACAGTG-AACTCATGTAAGTG
* * *
934977 ATCATCATGCTTACTACTATACA---CA-TCA--T--G-C
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* * * *
935008 ATCACCATGCATACTTCTGTACAGTGTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
* *
935048 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTG
1 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
935088 ATCAT
1 ATCAT
935093 TATGTTTTAA
Statistics
Matches: 867, Mismatches: 132, Indels: 90
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.00
31 38 0.04
32 3 0.00
33 23 0.03
34 4 0.00
35 38 0.04
36 129 0.15
37 10 0.01
38 3 0.00
39 5 0.01
40 448 0.52
41 164 0.19
42 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (40 bp):
ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTG
Found at i:934058 original size:71 final size:72
Alignment explanation
Indices: 933966--935070 Score: 507
Period size: 81 Copynumber: 14.5 Consensus size: 72
933956 GGAGTACACA
933966 TCATGTAAGTGTATCATCATGCTTACTACTGTACACATCATGT-ATCATCATGC-TACCTTCTGT
1 TCATGTAAGTG-ATCATCATGCTTACTACTGTACACATCATGTGATCATCATGCTTA-CTTCTGT
934029 ACAGTGAAC
64 ACAGTGAAC
* *
934038 TCATGTAAATGATCATCATGCTTACTACTGTACAGTGTACTCATGTAAATGATCATCATGCTTAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA-TCATG----TGATCATCATGCTTAC
* *
934103 TTCTATAC---GCA-
58 TTCTGTACAGTGAAC
* * * *
934114 TCATGAAAGTTATCATCATGCATACTACTATACACATCATGTAAGTGATCATCATGCTTACTTCT
1 TCATGTAAGTGATCATCATGCTTACTACTGTACACATCA--T--GTGATCATCATGCTTACTTCT
* *
934179 ATACA---CA-
62 GTACAGTGAAC
* ** * *
934186 TCATGTTAGTGATCATCATGCTTACTAC-CAACACAGCATGTAAGTAATCATCATGCTTACTACT
1 TCATGTAAGTGATCATCATGCTTACTACTGTACACATCATGT--G--ATCATCATGCTTACTTCT
*
934250 GTACAGTAAAC
62 GTACAGTGAAC
* * *
934261 TAATGTATGTGATCATCATGCTTACTACTATACACATCATGT-ATCATCATG-TATACTTCTGTA
1 TCATGTAAGTGATCATCATGCTTACTACTGTACACATCATGTGATCATCATGCT-TACTTCTGTA
*
934324 CAGTGTAC
65 CAGTGAAC
* *
934332 TCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTATGTCATGTAAGTGATCATCATGCTTA
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA--TCA--T--GTGATCATCATGCTTA
* *
934397 CTTCTATACA--CAA-
57 CTTCTGTACAGTGAAC
* * * *
934410 -CATGTAAGTTATCATCATGCTTACTACTGTACAGTCTTTGTCATGTAAGTGATCTTCATGCTAA
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA--C---ATCA--T--GTGATCATCATGCTTA
* *
934474 CTAT-TGTACAATGTAC
57 CT-TCTGTACAGTGAAC
* * * * *
934490 TCATATAAATGATCATCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA-TCA--T--GTGATCATCATGCTTAC
* * **
934555 TACTGCACAGTCTAC
58 TTCTGTACAGTGAAC
* * * *
934570 TCATGTAAGTGATCATCATGCTAACTACTGTACAATGTACTCATATAAATGATCATCATGCATAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTAC-A--CA-TC--AT--GTGATCATCATGCTTAC
934635 TTC--T---GT--AC
58 TTCTGTACAGTGAAC
* ** *
934643 TCATGTAAGTGATTATCATGCTTACTTTTGTACAGTCTACTCATGTAAGTGATTATCATGCTTAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA--C-A-TCA--T--GTGATCATCATGCTTAC
*
934708 TACTGTACAGTGAAC
58 TTCTGTACAGTGAAC
* * * *
934723 TCATGTAAGAGATCATCGTGCTTACTACTATACAGTGAACTCATGTAAGTGATCATCATGCTTAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA-TCA--T--GTGATCATCATGCTTAC
* * **
934788 TACTGTACAGTTTATG
58 TTCTGTACAG-TGAAC
* *
934804 TCATGTAAGTGATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCATAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA-TCA--T--GTGATCATCATGCTTAC
* **
934869 TTCAGTACAGTGTATG
58 TTCTGTACAGTG-AAC
* * * * * * *
934885 TCATATAAGTGAACATCATGCTTACTACAGTACAGTGAACTCATGTAAGTGATCATCATTCATAA
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA---CA-TCA--T--GTGATCATCATGCTTAC
** * **
934950 ACCAGTACAGTGTATG
58 TTCTGTACAGTG-AAC
* * * * *
934966 TCATGTAAGTAATCATCATGCTTACTACTATACACATCATG-CATCACCATGCATACTTCTGTAC
1 TCATGTAAGTGATCATCATGCTTACTACTGTACACATCATGTGATCATCATGCTTACTTCTGTAC
*
935030 AGTGTAC
66 AGTGAAC
*
935037 TCATGTAAGTGATCATCATGCTTACTTCTGTACA
1 TCATGTAAGTGATCATCATGCTTACTACTGTACA
935071 GTGTACTCAT
Statistics
Matches: 841, Mismatches: 129, Indels: 127
0.77 0.12 0.12
Matches are distributed among these distances:
67 2 0.00
69 2 0.00
70 1 0.00
71 137 0.16
72 84 0.10
73 56 0.07
74 4 0.00
75 34 0.04
76 43 0.05
77 65 0.08
78 5 0.01
79 3 0.00
80 175 0.21
81 228 0.27
82 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (72 bp):
TCATGTAAGTGATCATCATGCTTACTACTGTACACATCATGTGATCATCATGCTTACTTCTGTAC
AGTGAAC
Found at i:934399 original size:81 final size:80
Alignment explanation
Indices: 934303--935092 Score: 823
Period size: 81 Copynumber: 10.1 Consensus size: 80
934293 CACATCATGT
*
934303 ATCATCATG-TATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAG
1 ATCATCATGCT-TACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAG
*
934367 TGTATGTCATGTAAGTG
65 TGTA-CTCATGTAAGTG
* * * *
934384 ATCATCATGCTTACTTCTATACA---CA-ACATGTAAGTTATCATCATGCTTACTACTGTACAGT
1 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
* **
934445 CTTTGTCATGTAAGTG
66 -GTACTCATGTAAGTG
* * * * * * *
934461 ATCTTCATGCTAACTAT-TGTACAATGTACTCATATAAATGATCATCATGCATACTTCTGTACAG
1 ATCATCATGCTTACT-TCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAG
934525 TGTACTCATGTAAGTG
65 TGTACTCATGTAAGTG
* * * * *
934541 ATCATCATGCTTACTACTGCACAGTCTACTCATGTAAGTGATCATCATGCTAACTACTGTACAAT
1 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
* *
934606 GTACTCATATAAATG
66 GTACTCATGTAAGTG
* * **
934621 ATCATCATGC--A-TACT-T-C--TGTACTCATGTAAGTGATTATCATGCTTACTTTTGTACAGT
1 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
*
934679 CTACTCATGTAAGTG
66 GTACTCATGTAAGTG
* * * * * *
934694 ATTATCATGCTTACTACTGTACAGTGAACTCATGTAAGAGATCATCGTGCTTACTACTATACAGT
1 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
*
934759 GAACTCATGTAAGTG
66 GTACTCATGTAAGTG
* * *
934774 ATCATCATGCTTACTACTGTACAGTTTATGTCATGTAAGTGATCATCATGCTTACTACTGTACAG
1 ATCATCATGCTTACTTCTGTACAGTGTA-CTCATGTAAGTGATCATCATGCTTACTACTGTACAG
*
934839 TGAACTCATGTAAGTG
65 TGTACTCATGTAAGTG
* * * * * *
934855 ATCATCATGCATACTTCAGTACAGTGTATGTCATATAAGTGAACATCATGCTTACTACAGTACAG
1 ATCATCATGCTTACTTCTGTACAGTGTA-CTCATGTAAGTGATCATCATGCTTACTACTGTACAG
*
934920 TGAACTCATGTAAGTG
65 TGTACTCATGTAAGTG
* * *** * * * *
934936 ATCATCATTCATAAACCAGTACAGTGTATGTCATGTAAGTAATCATCATGCTTACTACTATACA-
1 ATCATCATGCTTACTTCTGTACAGTGTA-CTCATGTAAGTGATCATCATGCTTACTACTGTACAG
* *
935000 --CA-TCA--T--G-C
65 TGTACTCATGTAAGTG
* * *
935008 ATCACCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGT
1 ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
935073 GTACTCATGTAAGTG
66 GTACTCATGTAAGTG
935088 ATCAT
1 ATCAT
935093 TATGTTTTAA
Statistics
Matches: 592, Mismatches: 92, Indels: 51
0.81 0.13 0.07
Matches are distributed among these distances:
71 31 0.05
72 22 0.04
73 57 0.10
74 1 0.00
75 6 0.01
76 4 0.01
77 72 0.12
78 6 0.01
79 1 0.00
80 164 0.28
81 227 0.38
82 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (80 bp):
ATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
GTACTCATGTAAGTG
Found at i:934661 original size:33 final size:33
Alignment explanation
Indices: 934567--934675 Score: 110
Period size: 33 Copynumber: 3.1 Consensus size: 33
934557 CTGCACAGTC
934567 TACTCATGTAAGTGATCATCATGCTAACTACTGTACAATG
1 TACTCATGTAAGTGATCATCATGC--A-TACT-T-C--TG
* *
934607 TACTCATATAAATGATCATCATGCATACTTCTG
1 TACTCATGTAAGTGATCATCATGCATACTTCTG
* * *
934640 TACTCATGTAAGTGATTATCATGCTTACTTTTG
1 TACTCATGTAAGTGATCATCATGCATACTTCTG
934673 TAC
1 TAC
934676 AGTCTACTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
33 33 0.53
35 1 0.02
36 1 0.02
37 4 0.06
38 1 0.02
40 22 0.35
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (33 bp):
TACTCATGTAAGTGATCATCATGCATACTTCTG
Found at i:934716 original size:193 final size:193
Alignment explanation
Indices: 934073--935092 Score: 772
Period size: 193 Copynumber: 5.3 Consensus size: 193
934063 TACTGTACAG
* * * *
934073 TGTACTCATGTAAATGATCATCATGCTTACTTCTATAC---GCA-TCATGA-AAGTTATCATCAT
1 TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCAT-ATAAGTGATCATCAT
* * * * * *
934133 GCATACTACTATACA---CA-TCATGTAAGTGATCATCATGCTTACTTCTATACA---CA--TCA
65 GCTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTACTGTACAGTGTATCTCA
* * * * * * *
934189 TGTTAGTGATCATCATGCTTACTACCA-ACAC---AGCATGTAAGTAATCATCATGCTTACTAC
130 TGTAAGTGATCATCATGCTTACTACTATACACATTATCATATAAATGATCATCATGCATACTAC
* * * *
934249 TGTACAGTAAACTAATGTATGTGATCATCATGCTTACTACTATACA---CA-TC--AT--GT-AT
1 TGTAC--T---C--ATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCATATAAGTGAT
* * *
934305 CATCATG-TATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTG
59 CATCATGCT-TACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTACTGTACAGTG
* * * * * *
934369 TATGTCATGTAAGTGATCATCATGCTTACTTCTATACACA--A-CATGTAAGTTATCATCATGCT
123 TATCTCATGTAAGTGATCATCATGCTTACTACTATACACATTATCATATAAATGATCATCATGCA
934431 TACTAC
188 TACTAC
* * * *
934437 TGTACAGTCTTTGTCATGTAAGTGATCTTCATGCTAACTAT-TGTACAATGTACTCATATAAATG
1 TGT--A--C----TCATGTAAGTGATCATCATGCTTACT-TCTGTACAGTGTACTCATATAAGTG
* * * *
934501 ATCATCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTACTACTGCACAGT
57 ATCATCATGCTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTACTGTACAGT
* * *
934566 CTA-CTCATGTAAGTGATCATCATGCTAACTACTGTACA-ATGTACTCATATAAATGATCATCAT
122 GTATCTCATGTAAGTGATCATCATGCTTACTACTATACACAT-TA-TCATATAAATGATCATCAT
*
934629 GCATACTTC
185 GCATACTAC
* * * * *
934638 TGTACTCATGTAAGTGATTATCATGCTTACTTTTGTACAGTCTACTCATGTAAGTGATTATCATG
1 TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCATATAAGTGATCATCATG
* * * *
934703 CTTACTACTGTACAGTGAACTCATGTAAGAGATCATCGTGCTTACTACTATACAGTG-AACTCAT
66 CTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTACTGTACAGTGTATCTCAT
* ** * *
934767 GTAAGTGATCATCATGCTTACTACTGTACAGTTTATGTCATGTAAGTGATCATCATGCTTACTAC
131 GTAAGTGATCATCATGCTTACTACTATACACATTA--TCATATAAATGATCATCATGC--A-TAC
934832 TGTAC
191 --TAC
* * * * *
934837 AGTGAACTCATGTAAGTGATCATCATGCATACTTCAGTACAGTGTATGTCATATAAGTGAACATC
1 --TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTA-CTCATATAAGTGATCATC
* * * * * *
934902 ATGCTTACTACAGTACAGTGAACTCATGTAAGTGATCATCATTCATA-AACCAGTACAGTGTATG
63 ATGCTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTA-CTGTACAGTGTATC
* * ** *
934966 TCATGTAAGTAATCATCATGCTTACTACTATACACATCATGCATCA-CCATGCATACTTC-TG--
127 TCATGTAAGTGATCATCATGCTTACTACTATACACATTAT-CAT-ATAAATG-AT-CATCATGCA
*
935027 TAC-AG
188 TACTAC
*
935032 TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCATGTAAGTGATCAT
1 TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCATATAAGTGATCAT
935093 TATGTTTTAA
Statistics
Matches: 690, Mismatches: 93, Indels: 106
0.78 0.10 0.12
Matches are distributed among these distances:
176 5 0.01
178 20 0.03
179 2 0.00
180 1 0.00
181 2 0.00
182 33 0.05
183 32 0.05
185 1 0.00
187 27 0.04
188 33 0.05
189 27 0.04
190 1 0.00
191 1 0.00
192 18 0.03
193 178 0.26
194 22 0.03
195 3 0.00
196 2 0.00
197 36 0.05
198 66 0.10
199 4 0.01
201 65 0.09
202 69 0.10
203 39 0.06
204 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (193 bp):
TGTACTCATGTAAGTGATCATCATGCTTACTTCTGTACAGTGTACTCATATAAGTGATCATCATG
CTTACTACTGTACAGTGAACTCATGTAAGTGATCATCATGCTTACTACTGTACAGTGTATCTCAT
GTAAGTGATCATCATGCTTACTACTATACACATTATCATATAAATGATCATCATGCATACTAC
Found at i:935193 original size:152 final size:151
Alignment explanation
Indices: 934844--935212 Score: 397
Period size: 152 Copynumber: 2.4 Consensus size: 151
934834 TACAGTGAAC
* * * *
934844 TCATGTAAGTGATCATCATGCATACTTCAGTACAGTGTATGTCATATAAGTGAACATCATGCTTA
1 TCATGTAAGTGATCATCATGCATACTTCTGTACAGTGTA-CTCATGTAAGTGATCATCATGCTTA
* **
934909 CTACAGTACAGTGAACTCATGTAAGTGATCATCATTCATAAACCAGTACAGTGTATGTCATGTAA
65 CTACAGTACAGTGAACTCATGTAAGTGATCATCATTCATAAACCAGAACAGTGTACATCATGTAA
* * *
934974 GTAATCATCATGCTTACTACTA
130 GAAATAATCATGCTAACTACTA
** * *
934996 TACACATCA-TGCATCACCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTT
1 T-CATGTAAGTG-ATCATCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTT
* * * * * *
935060 ACTTCTGTACAGTGTACTCATGTAAGTGATCATTATGT-TTTAACCA-AACCA-TGTACATCATG
64 ACTACAGTACAGTGAACTCATGTAAGTGATCATCAT-TCATAAACCAGAA-CAGTGTACATCATG
* *
935122 TAAGAAATAATCTTGCTGAAAC-CCTA
127 TAAGAAATAATCATGCT--AACTACTA
* * * *
935148 TCATGTAAGTGATCATCATTCTTACTTCTGTACAGTGGACATCATGTAAGTGATCATTATGCTTA
1 TCATGTAAGTGATCATCATGCATACTTCTGTACAGTGTAC-TCATGTAAGTGATCATCATGCTTA
935213 AACCAACTTG
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
151 53 0.30
152 93 0.52
153 33 0.18
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (151 bp):
TCATGTAAGTGATCATCATGCATACTTCTGTACAGTGTACTCATGTAAGTGATCATCATGCTTAC
TACAGTACAGTGAACTCATGTAAGTGATCATCATTCATAAACCAGAACAGTGTACATCATGTAAG
AAATAATCATGCTAACTACTA
Found at i:937520 original size:2 final size:2
Alignment explanation
Indices: 937515--937547 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
937505 ACAAAAAAGC
937515 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
937548 ATGCAAACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:938515 original size:27 final size:27
Alignment explanation
Indices: 938477--938535 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
938467 CGCCGCAAAC
938477 TGTGGGTAAGGATCTACATCTGAAGGA
1 TGTGGGTAAGGATCTACATCTGAAGGA
938504 TGTGGGTAAGGATCTACATCTGAAGGA
1 TGTGGGTAAGGATCTACATCTGAAGGA
938531 TGTGG
1 TGTGG
938536 CGGCAGTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.36, T:0.27
Consensus pattern (27 bp):
TGTGGGTAAGGATCTACATCTGAAGGA
Found at i:941930 original size:38 final size:38
Alignment explanation
Indices: 941875--942138 Score: 476
Period size: 38 Copynumber: 7.0 Consensus size: 38
941865 CTGTGAGTCG
* *
941875 TAAGGTCAAGTCTAGCTGAGGCTTTCACAACTTTTTCA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
941913 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
941951 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
*
941989 TAAGGTCAAGTCCAGCTGAGGCTTTCACAACTTTTTCA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
942027 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
*
942065 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTTA
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
*
942103 TAAGGTCAAGTCCAGCTGAGGCTTTCACAA-TTTTTC
1 TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTC
942139 GCCTTCAAAA
Statistics
Matches: 219, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
37 5 0.02
38 214 0.98
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (38 bp):
TAAGGTCAAGTCCAGCTGAGGTTTTCACAACTTTTTCA
Found at i:943448 original size:16 final size:16
Alignment explanation
Indices: 943427--943459 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
943417 GTGTGCTCGC
*
943427 TCACGTAATTCTCAGA
1 TCACGTAATTCACAGA
943443 TCACGTAATTCACAGA
1 TCACGTAATTCACAGA
943459 T
1 T
943460 AAAACGGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (16 bp):
TCACGTAATTCACAGA
Found at i:953796 original size:34 final size:34
Alignment explanation
Indices: 953721--954326 Score: 737
Period size: 34 Copynumber: 17.9 Consensus size: 34
953711 GGGGCTTGGC
*
953721 AAACAGGGACTGTGTTGTACATGTAAGTAGGGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTA-AGGGG
*
953756 ATACAGGGACTGTGTTGTACATGTAAGTAAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
953790 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* * * *
953824 AAACAGGAACTGT-TTGAACATGTAAGTGAGGGC
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
953857 AAGCAGGGTCTGTG-T-TACATGTAAGTAAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
953889 AAACAGGGACTGTGTTGTACATGTAAGTGAGGGC
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* * *
953923 AAGCAGGGGCTGTGTTGTACATGTAAGTCAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
953957 GAACAGGGGCTGTGTTGTACATGTAAGTAAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
**
953991 AAACAGGGACTGTGTTGTACATGTAAGTAAGATG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* * *
954025 AAACAGGGGCTGAGTTGTGCATGTAAGTAAGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
*
954059 AAACAGGGACTGTGTTGTACATGTAAGT-GGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
954092 CAAGCA-GGATCTGTGTTGTACATGTAAGT-GGGGG
1 -AAACAGGGA-CTGTGTTGTACATGTAAGTAAGGGG
* *
954126 CAAGCA-GGATCTGTGTTGTACATGTAAGT-GGGGG
1 -AAACAGGGA-CTGTGTTGTACATGTAAGTAAGGGG
* * * *
954160 CAAGCAGGGGCTGTGTTTTACATGTAAGT-GGGGG
1 -AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
954194 CAAGCAGGGACTGTGTTGTACATGTAAGTGAGGGG
1 -AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* * *
954229 GAACAGGGGCTGTGTTGTACATGTAAGT-GGGGG
1 AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
* *
954262 CAAGCAGGGGCTGTGTTGTACATGTAAGTAAGGGG
1 -AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
*
954297 AAACAGGCACTGTGTTGTACATGTAAGTAA
1 AAACAGGGACTGTGTTGTACATGTAAGTAA
954327 TGGATTTAAG
Statistics
Matches: 509, Mismatches: 53, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
32 26 0.05
33 40 0.08
34 405 0.80
35 38 0.07
ACGTcount: A:0.28, C:0.10, G:0.37, T:0.24
Consensus pattern (34 bp):
AAACAGGGACTGTGTTGTACATGTAAGTAAGGGG
Found at i:954409 original size:34 final size:34
Alignment explanation
Indices: 954366--954436 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
954356 AAGGCTGGGN
954366 AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTA
1 AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTA
*
954400 AGTGAGGGCAAGCAGGGGCTGTGTTGTACATGTA
1 AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTA
954434 AGT
1 AGT
954437 AATGGATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.25, C:0.11, G:0.39, T:0.24
Consensus pattern (34 bp):
AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTA
Found at i:954456 original size:112 final size:111
Alignment explanation
Indices: 954254--954476 Score: 347
Period size: 112 Copynumber: 2.0 Consensus size: 111
954244 TGTACATGTA
* * *
954254 AGTGGGGGCAAGCAGGGGCTGTGTTGTACATGTAAGTAAGGGGAAACAGGCACTGTGTTGTACAT
1 AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTAAGTAAGGGCAAACAGGCACTGTGTTGTACAT
**
954319 GTAAGTAATGGATTTAAGTGGATAAATACATGTAAGAAAGGCTGGG
66 GTAAGTAATGGATTTAAGTAAATAAATACATGTAAGAAAGGCTGGG
* * **
954365 NAGTGAGGGCAAGCAGGGACTGTGTTGTACATGTAAGTGAGGGCAAGCAGGGGCTGTGTTGTACA
1 -AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTAAGTAAGGGCAAACAGGCACTGTGTTGTACA
*
954430 TGTAAGTAATGGATTTAGGTAAATAAATACATGTAAGAAAGGCTGGG
65 TGTAAGTAATGGATTTAAGTAAATAAATACATGTAAGAAAGGCTGGG
954477 TTTTGGGAAC
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 101 1.00
ACGTcount: A:0.31, C:0.09, G:0.35, T:0.24
Consensus pattern (111 bp):
AGTGAGGGCAAGCAGGGACTGTGTTGTACATGTAAGTAAGGGCAAACAGGCACTGTGTTGTACAT
GTAAGTAATGGATTTAAGTAAATAAATACATGTAAGAAAGGCTGGG
Found at i:954705 original size:12 final size:13
Alignment explanation
Indices: 954677--954707 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
954667 ATTCTATGAA
954677 AATTTATCTATTT
1 AATTTATCTATTT
954690 AATTTATCTA-TT
1 AATTTATCTATTT
954702 AATTTA
1 AATTTA
954708 GATTTATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (13 bp):
AATTTATCTATTT
Found at i:954714 original size:18 final size:17
Alignment explanation
Indices: 954686--954719 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
954676 AAATTTATCT
954686 ATTTAATTTATCTATTA
1 ATTTAATTTATCTATTA
954703 ATTTAGATTTATCTATT
1 ATTTA-ATTTATCTATT
954720 TGACAGTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTAATTTATCTATTA
Found at i:957120 original size:193 final size:189
Alignment explanation
Indices: 956798--957173 Score: 605
Period size: 193 Copynumber: 1.9 Consensus size: 189
956788 TATCACTTTC
956798 ATGGTGAAGGACTTTCACTCGCAAACTCTTTTGATTCATTTAAAATTATACAAAAACCTAATATA
1 ATGGTGAAGGACTTTCACTCGCAAACTCTTTTGATTCATTTAAAATTATACAAAAACCTAATATA
956863 CATGTATACAGATGCAAAGAAATGCATTTTAATAAAAACCAGTATTCTGAGTAAGTAATTTGTGA
66 CATGTATACAGATGCAAAGAAATGCATTTTAATAAAAACCAGTATTCTGAGTAAGTAATTTGTGA
*
956928 AAACTAAA-C-TT-TCAGTGTAAAGAAATTGTTAAATCATTTTGTAAAAATGGTGAAAA
131 AAACTAAATCTTTATCAGTGTAAAGAAATTGTTAAATCATTTCGTAAAAATGGTGAAAA
956984 ATGGTGAAGGACTTTCACTCGCAAACTCTTTTGATTCATTTAAAATTATACAAAAACCTAATTTT
1 ATGGTGAAGGACTTTCACTCGCAAACTCTTTTGATTCATTTAAAATTATACAAAAACCT-A----
957049 TCATATACATGTATACAGATGCAAAGAAATGCATTTTAATAAAAACCAGTATTCTGAGTAAGTAA
61 --ATATACATGTATACAGATGCAAAGAAATGCATTTTAATAAAAACCAGTATTCTGAGTAAGTAA
*
957114 TTTGTGAAAACTAAATCATATTTTAATCAGTTTAAAGAAATTGTTAAATCATTTCGTAAA
124 TTTGTGAAAACTAAATC----TTT-ATCAGTGTAAAGAAATTGTTAAATCATTTCGTAAA
957174 TTTATTGTAA
Statistics
Matches: 173, Mismatches: 2, Indels: 15
0.91 0.01 0.08
Matches are distributed among these distances:
186 59 0.34
187 1 0.01
193 78 0.45
194 1 0.01
199 2 0.01
201 32 0.18
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (189 bp):
ATGGTGAAGGACTTTCACTCGCAAACTCTTTTGATTCATTTAAAATTATACAAAAACCTAATATA
CATGTATACAGATGCAAAGAAATGCATTTTAATAAAAACCAGTATTCTGAGTAAGTAATTTGTGA
AAACTAAATCTTTATCAGTGTAAAGAAATTGTTAAATCATTTCGTAAAAATGGTGAAAA
Found at i:967398 original size:2 final size:2
Alignment explanation
Indices: 967391--967446 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
967381 TTTCTTACAT
* *
967391 TC TC TC TC TC TC TC TG TC TC TG TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
967433 TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC
967447 AACTTTCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.46, G:0.04, T:0.50
Consensus pattern (2 bp):
TC
Found at i:968342 original size:17 final size:17
Alignment explanation
Indices: 968320--968352 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
968310 CTGGTACTGT
968320 ACCAGTTATCGGCTAAG
1 ACCAGTTATCGGCTAAG
968337 ACCAGTTATCGGCTAA
1 ACCAGTTATCGGCTAA
968353 ACTGAGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (17 bp):
ACCAGTTATCGGCTAAG
Found at i:986662 original size:2 final size:2
Alignment explanation
Indices: 986655--986685 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
986645 ATATGTCTCT
986655 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
986686 GTTATACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:988037 original size:63 final size:63
Alignment explanation
Indices: 987913--988109 Score: 243
Period size: 63 Copynumber: 3.1 Consensus size: 63
987903 ATGTAATAGC
* * * * * * * * *
987913 TACACTTAGTAATAATCATTGTAAGCATTAGTAAAAAAAATAGTTCTAGGACTTTATGTATAATT
1 TACATTTAGTTATAACCACTGTATGCATTAGT--AACAAATATTTCTCGCACTTTATGTATAATT
987978 TACATTTAGTTATAACCACTGTATGCATTAGTAACAAATATTTCTCGCACTTTATGTATAATT
1 TACATTTAGTTATAACCACTGTATGCATTAGTAACAAATATTTCTCGCACTTTATGTATAATT
* * * *
988041 TACATTTAGTTATAACCACTGTATGCATTAGTAACAACTATTTCTTC-CACTTCATGTATTAGT
1 TACATTTAGTTATAACCACTGTATGCATTAGTAACAAATATTTC-TCGCACTTTATGTATAATT
988104 TACATT
1 TACATT
988110 CAAAATTTGT
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
63 89 0.75
64 2 0.02
65 27 0.23
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (63 bp):
TACATTTAGTTATAACCACTGTATGCATTAGTAACAAATATTTCTCGCACTTTATGTATAATT
Found at i:988091 original size:31 final size:31
Alignment explanation
Indices: 987993--988091 Score: 74
Period size: 31 Copynumber: 3.2 Consensus size: 31
987983 TTAGTTATAA
987993 CCACTGTATGCATTAGTAACAAATATTTC-T
1 CCACTGTATGCATTAGTAACAAATATTTCTT
* * * * * ** * * *
988023 CGCACTTTATGTATAATTTACATTTAGTTATAA
1 C-CACTGTATGCATTAGTAACAAATATTTCT-T
*
988056 CCACTGTATGCATTAGTAACAACTATTTCTT
1 CCACTGTATGCATTAGTAACAAATATTTCTT
988087 CCACT
1 CCACT
988092 TCATGTATTA
Statistics
Matches: 46, Mismatches: 20, Indels: 5
0.65 0.28 0.07
Matches are distributed among these distances:
30 1 0.02
31 24 0.52
32 20 0.43
33 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39
Consensus pattern (31 bp):
CCACTGTATGCATTAGTAACAAATATTTCTT
Done.