EH Amount of Evolutionary History PI2newick Import data files from Phylogenetic Independance Package RV.rtest Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R). RVdist.randtest Tests of randomization on the correlation between two distance matrices (in R). abouheif.eg Phylogenies and quantitative traits from Abouheif acacia Spatial pattern analysis in plant communities add.scatter Add graphics to an existing plot ade4-deprecated Deprecated functions in ade4 ade4-package The ade4 package ade4toR Format Change Utility aminoacyl Codon usage amova Analysis of molecular variance apis108 Allelic frequencies in ten honeybees populations at eight microsatellites loci apqe Apportionment of Quadratic Entropy aravo Distribution of Alpine plants in Aravo (Valloire, France) ardeche Fauna Table with double (row and column) partitioning area.plot Graphical Display of Areas arrival Arrivals at an intensive care unit as.taxo Taxonomy atlas Small Ecological Dataset atya Genetic variability of Cacadors avijons Bird species distribution avimedi Fauna Table for Constrained Ordinations aviurba Ecological Tables Triplet bacteria Genomes of 43 Bacteria banque Table of Factors baran95 African Estuary Fishes bca Between-Class Analysis bca.coinertia Between-class coinertia analysis bca.rlq Between-Class RLQ analysis bf88 Cubic Ecological Data bicenter.wt Double Weighted Centring bordeaux Wine Tasting bsetal97 Ecological and Biological Traits buech Buech basin butterfly Genetics-Ecology-Environment Triple cailliez Transformation to make Euclidean a distance matrix capitales Road Distances carni19 Phylogeny and quantative trait of carnivora carni70 Phylogeny and quantitative traits of carnivora carniherbi49 Taxonomy, phylogenies and quantitative traits of carnivora and herbivora casitas Enzymatic polymorphism in Mus musculus cca Canonical Correspondence Analysis chatcat Qualitative Weighted Variables chats Pair of Variables chazeb Charolais-Zebus chevaine Enzymatic polymorphism in Leuciscus cephalus clementines Fruit Production cnc2003 Frequenting movie theaters in France in 2003 coinertia Coinertia Analysis coleo Table of Fuzzy Biological Traits combine.4thcorner Functions to combine and adjust the outputs 3-table methods corkdist Tests of randomization between distances applied to 'kdist' objetcs corvus Corvus morphology costatis STATIS and Co-Inertia : Analysis of a series of paired ecological tables deug Exam marks for some students disc Rao's dissimilarity coefficient discrimin Linear Discriminant Analysis (descriptive statistic) discrimin.coa Discriminant Correspondence Analysis dist.binary Computation of Distance Matrices for Binary Data dist.dudi Computation of the Distance Matrix from a Statistical Triplet dist.genet Genetic distances from gene frequencies dist.ktab Mixed-variables coefficient of distance dist.neig Computation of the Distance Matrix associated to a Neighbouring Graph dist.prop Computation of Distance Matrices of Percentage Data dist.quant Computation of Distance Matrices on Quantitative Variables divc Rao's diversity coefficient also called quadratic entropy divcmax Maximal value of Rao's diversity coefficient also called quadratic entropy dotchart.phylog Representation of many quantitative variables in front of a phylogenetic tree dotcircle Representation of n values on a circle doubs Pair of Ecological Tables dpcoa Double principal coordinate analysis dudi Duality Diagram dudi.acm Multiple Correspondence Analysis dudi.coa Correspondence Analysis dudi.dec Decentred Correspondence Analysis dudi.fca Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis dudi.hillsmith Ordination of Tables mixing quantitative variables and factors dudi.mix Ordination of Tables mixing quantitative variables and factors dudi.nsc Non symmetric correspondence analysis dudi.pca Principal Component Analysis dudi.pco Principal Coordinates Analysis dunedata Dune Meadow Data ecg Electrocardiogram data ecomor Ecomorphological Convergence elec88 Electoral Data escopage K-tables of wine-tasting euro123 Triangular Data fission Fission pattern and heritable morphological traits foucart K-tables Correspondence Analysis with the same rows and the same columns fourthcorner Functions to compute the fourth-corner statistic friday87 Faunistic K-tables fruits Pair of Tables fuzzygenet Reading a table of genetic data (diploid individuals) gearymoran Moran's I and Geary'c randomization tests for spatial and phylogenetic autocorrelation genet A class of data: tables of populations and alleles ggtortoises Microsatellites of Galapagos tortoises populations granulo Granulometric Curves gridrowcol Complete regular grid analysis hdpg Genetic Variation In Human Populations housetasks Contingency Table humDNAm human mitochondrial DNA restriction data ichtyo Point sampling of fish community inertia.dudi Statistics of inertia in a one-table analysis irishdata Geary's Irish Data is.euclid Is a Distance Matrix Euclidean ? julliot Seed dispersal jv73 K-tables Multi-Regions kcponds Ponds in a nature reserve kdist the class of objects 'kdist' (K distance matrices) kdist2ktab Transformation of K distance matrices (object 'kdist') into K Euclidean representations (object 'ktab') kdisteuclid a way to obtain Euclidean distance matrices kplot Generic Function for Multiple Graphs in a K-tables Analysis kplot.foucart Multiple Graphs for the Foucart's Correspondence Analysis kplot.mcoa Multiple Graphs for a Multiple Co-inertia Analysis kplot.mfa Multiple Graphs for a Multiple Factorial Analysis kplot.pta Multiple Graphs for a Partial Triadic Analysis kplot.sepan Multiple Graphs for Separated Analyses in a K-tables kplot.statis Multiple Graphs of a STATIS Analysis krandtest Class of the Permutation Tests (in C). ktab the class of objects 'ktab' (K-tables) ktab.data.frame Creation of K-tables from a data frame ktab.list.df Creating a K-tables from a list of data frames. ktab.list.dudi Creation of a K-tables from a list of duality diagrams ktab.match2ktabs STATIS and Co-Inertia : Analysis of a series of paired ecological tables ktab.within Process to go from a Within Analysis to a K-tables lascaux Genetic/Environment and types of variables lingoes Transformation of a Distance Matrix for becoming Euclidean lizards Phylogeny and quantitative traits of lizards macaca Landmarks macon Wine Tasting macroloire Assemblages of Macroinvertebrates in the Loire River (France) mafragh Phyto-Ecological Survey mantel.randtest Mantel test (correlation between two distance matrices (in C).) mantel.rtest Mantel test (correlation between two distance matrices (in R).) maples Phylogeny and quantitative traits of flowers mariages Correspondence Analysis Table mcoa Multiple CO-inertia Analysis mdpcoa Multiple Double Principal Coordinate Analysis meau Ecological Data : sites-variables, sites-species, where and when meaudret Ecological Data : sites-variables, sites-species, where and when mfa Multiple Factorial Analysis microsatt Genetic Relationships between cattle breeds with microsatellites mjrochet Phylogeny and quantitative traits of teleos fishes mld Multi Level Decomposition of unidimensional data mollusc Faunistic Communities and Sampling Experiment monde84 Global State of the World in 1984 morphosport Athletes' Morphology mstree Minimal Spanning Tree multispati Multivariate spatial analysis multispati.randtest Multivariate spatial autocorrelation test (in C) multispati.rtest Multivariate spatial autocorrelation test neig Neighbourhood Graphs newick.eg Phylogenetic trees in Newick format newick2phylog Create phylogeny niche Method to Analyse a pair of tables : Environmental and Faunistic Data nipals Non-linear Iterative Partial Least Squares (NIPALS) algorithm njplot Phylogeny and trait of bacteria olympic Olympic Decathlon optimEH Nee and May's optimizing process oribatid Oribatid mite originality Originality of a species orisaved Maximal or minimal amount of originality saved under optimal conditions orthobasis Orthonormal basis for orthonormal transform orthogram Orthonormal decomposition of variance ours A table of Qualitative Variables palm Phylogenetic and quantitative traits of amazonian palm trees pap Taxonomy and quantitative traits of carnivora pcaiv Principal component analysis with respect to instrumental variables pcaivortho Principal Component Analysis with respect to orthogonal instrumental variables pcoscaled Simplified Analysis in Principal Coordinates perthi02 Contingency Table with a partition in Molecular Biology phylog Phylogeny piosphere Plant traits response to grazing plot.phylog Plot phylogenies presid2002 Results of the French presidential elections of 2002 print.between Between-Class Analysis print.within Within-Class Analysis procella Phylogeny and quantitative traits of birds procuste Simple Procruste Rotation between two sets of points procuste.randtest Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C). procuste.rtest Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R). pta Partial Triadic Analysis of a K-tables quasieuclid Transformation of a distance matrice to a Euclidean one randEH Nee and May's random process randtest Class of the Permutation Tests (in C). randtest.amova Permutation tests on an analysis of molecular variance (in C). randtest.between Monte-Carlo Test on the between-groups inertia percentage (in C). randtest.coinertia Monte-Carlo test on a Co-inertia analysis (in C). randtest.discrimin Monte-Carlo Test on a Discriminant Analysis (in C). randtest.pcaiv Monte-Carlo Test on the percentage of explained (i.e. constrained) inertia rankrock Ordination Table reconst Reconstitution of Data from a Duality Diagram rhizobium Genetic structure of two nitrogen fixing bacteria influenced by geographical isolation and host specialization rhone Physico-Chemistry Data rlq RLQ analysis rpjdl Avifauna and Vegetation rtest Class of the Permutation Tests (in R). rtest.between Monte-Carlo Test on the between-groups inertia percentage (in R). rtest.discrimin Monte-Carlo Test on a Discriminant Analysis (in R). s.arrow Plot of the factorial maps for the projection of a vector basis s.chull Plot of the factorial maps with polygons of contour by level of a factor s.class Plot of factorial maps with representation of point classes s.corcircle Plot of the factorial maps of a correlation circle s.distri Plot of a frequency distribution s.hist Display of a scatterplot and its two marginal histograms s.image Graph of a variable using image and contour s.kde2d Scatter Plot with Kernel Density Estimate s.label Scatter Plot s.logo Representation of an object in a graph by a picture s.match Plot of Paired Coordinates s.match.class Scatterplot of two sets of coordinates and a partionning into classes s.multinom Graph of frequency profiles (useful for instance in genetic) s.traject Trajectory Plot s.value Representation of a value in a graph santacatalina Indirect Ordination sarcelles Array of Recapture of Rings scalewt Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor) scatter Graphical representation of the outputs of a multivariate analysis scatter.acm Plot of the factorial maps in a Multiple Correspondence Analysis scatter.coa Plot of the factorial maps for a correspondence analysis scatter.dudi Plot of the Factorial Maps scatter.fca Plot of the factorial maps for a fuzzy correspondence analysis scatterutil.base Graphical utility functions sco.boxplot Representation of the link between a variable and a set of qualitative variables sco.class 1D plot of a numeric score and a factor with labels sco.distri Representation by mean- standard deviation of a set of weight distributions on a numeric score sco.gauss Relationships between one score and qualitative variables sco.label 1D plot of a numeric score with labels sco.match 1D plot of a pair of numeric scores with labels sco.quant Graph to Analyse the Relation between a Score and Quantitative Variables score Graphs for One Dimension score.acm Graphs to study one factor in a Multiple Correspondence Analysis score.coa Reciprocal scaling after a correspondence analysis score.mix Graphs to Analyse a factor in a Mixed Analysis score.pca Graphs to Analyse a factor in PCA seconde Students and Subjects sepan Separated Analyses in a K-tables skulls Morphometric Evolution statico STATIS and Co-Inertia : Analysis of a series of paired ecological tables statis STATIS, a method for analysing K-tables steppe Transect in the Vegetation supcol Projections of Supplementary Columns suprow Projections of Supplementary Rows symbols.phylog Representation of a quantitative variable in front of a phylogenetic tree syndicats Two Questions asked on a Sample of 1000 Respondents t3012 Average temperatures of 30 French cities table.cont Plot of Contingency Tables table.dist Graph Display for Distance Matrices table.paint Plot of the arrays by grey levels table.phylog Plot arrays in front of a phylogenetic tree table.value Plot of the Arrays tarentaise Mountain Avifauna taxo.eg Examples of taxonomy testdim Function to perform a test of dimensionality tintoodiel Tinto and Odiel estuary geochemistry tithonia Phylogeny and quantitative traits of flowers tortues Morphological Study of the Painted Turtle toxicity Homogeneous Table triangle.class Triangular Representation and Groups of points triangle.plot Triangular Plotting trichometeo Pair of Ecological Data ungulates Phylogeny and quantitative traits of ungulates. uniquewt.df Elimination of Duplicated Rows in a Array variance.phylog The phylogenetic ANOVA vegtf Vegetation in Trois-Fontaines veuvage Example for Centring in PCA wca Within-Class Analysis wca.rlq Within-Class RLQ analysis westafrica Freshwater fish zoogeography in west Africa withincoinertia Within-class coinertia analysis withinpca Normed within principal component analysis witwit.coa Internal Correspondence Analysis woangers Plant assemblages in woodlands of the conurbation of Angers (France) worksurv French Worker Survey (1970) yanomama Distance Matrices zealand Road distances in New-Zealand