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A B C D E F G I L M N O P Q R S T U V W X misc
| lme4-package | Linear, generalized linear, and nonlinear mixed models |
| anova.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| as.data.frame.thpr | Profile method for merMod objects |
| as.data.frame.VarCorr.merMod | Extract Variance and Correlation Components |
| as.function.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| bootMer | Model-based (Semi-)Parametric Bootstrap for Mixed Models |
| cake | Breakage Angle of Chocolate Cakes |
| cbpp | Contagious bovine pleuropneumonia |
| coef.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| confint.merMod | Compute Confidence Intervals for Parameters of a [ng]lmer Fit |
| convergence | Control of Mixed Model Fitting |
| densityplot.thpr | Mixed-Effects Profile Plots (Regular / Density / Pairs) |
| devcomp | Extract the deviance component list |
| deviance.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| df.residual.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| dotplot.ranef.mer | Extract the modes of the random effects |
| drop1.merMod | Drop all possible single fixed-effect terms from a mixed effect model |
| dummy | Dummy variables (experimental) |
| Dyestuff | Yield of dyestuff by batch |
| Dyestuff2 | Yield of dyestuff by batch |
| expandDoubleVerts | Expand terms with "||" notation into separate "|" terms |
| extractAIC.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| family.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| findbars | Determine random-effects expressions from a formula |
| fitted.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| fixed.effects | Extract fixed-effects estimates |
| fixef | Extract fixed-effects estimates |
| fixef.merMod | Extract fixed-effects estimates |
| formula.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| fortify | add information to data based on a fitted model |
| fortify.merMod | add information to data based on a fitted model |
| getL | Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| getL-method | Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| getME | Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| GHrule | Univariate Gauss-Hermite quadrature rule |
| glFormula | Modular functions for mixed model fits |
| glmer | Fit Generalized Linear Mixed-Effects Models |
| glmer.nb | glmer() for Negative Binomial |
| glmerControl | Control of Mixed Model Fitting |
| glmerMod-class | Class "merMod" of Fitted Mixed-Effect Models |
| glmFamily | Generator object for the 'glmFamily' class |
| glmFamily-class | Class '"glmFamily"' - a reference class for 'family' |
| glmResp | Generator objects for the response classes |
| glmResp-class | Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"' |
| golden | Generator object for the golden search optimizer class. |
| golden-class | Class '"golden"' |
| GQdk | Sparse Gaussian Quadrature grid |
| GQN | Sparse Gauss-Hermite quadrature grids |
| grouseticks | Data on red grouse ticks from Elston et al. 2001 |
| grouseticks_agg | Data on red grouse ticks from Elston et al. 2001 |
| InstEval | University Lecture/Instructor Evaluations by Students at ETH |
| isGLMM | Check characteristics of models |
| isGLMM.merMod | Check characteristics of models |
| isLMM | Check characteristics of models |
| isLMM.merMod | Check characteristics of models |
| isNested | Is f1 nested within f2? |
| isNLMM | Check characteristics of models |
| isNLMM.merMod | Check characteristics of models |
| isREML | Check characteristics of models |
| isREML.merMod | Check characteristics of models |
| lFormula | Modular functions for mixed model fits |
| lme4 | Linear, generalized linear, and nonlinear mixed models |
| lmer | Fit Linear Mixed-Effects Models |
| lmerControl | Control of Mixed Model Fitting |
| lmerMod-class | Class "merMod" of Fitted Mixed-Effect Models |
| lmerResp | Generator objects for the response classes |
| lmerResp-class | Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"' |
| lmList | List of lm Objects with a Common Model |
| lmList-class | Class "lmList" of 'lm' Objects on Common Model |
| lmResp | Generator objects for the response classes |
| lmResp-class | Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"' |
| log.thpr | Profile method for merMod objects |
| logLik.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| logProf | Profile method for merMod objects |
| mcmcsamp | Getting p-values for fitted models |
| merMod | Class "merMod" of Fitted Mixed-Effect Models |
| merMod-class | Class "merMod" of Fitted Mixed-Effect Models |
| merPredD | Generator object for the 'merPredD' class |
| merPredD-class | Class '"merPredD"' - a dense predictor reference class |
| mkdevfun | Create a deviance evaluation function from a predictor and a response module |
| mkGlmerDevfun | Modular functions for mixed model fits |
| mkLmerDevfun | Modular functions for mixed model fits |
| mkMerMod | Create a merMod object |
| mkRespMod | Create an lmerResp, glmResp or nlsResp instance |
| mkReTrms | Create Z, Lambda, Lind, etc. |
| mkVarCorr | Make Variance and Correlation Matrices from 'theta' |
| model.frame.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| model.matrix.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| modular | Modular functions for mixed model fits |
| NelderMead | Class '"NelderMead"' of Nelder-Mead optimizers and its Generator |
| NelderMead-class | Class '"NelderMead"' of Nelder-Mead optimizers and its Generator |
| Nelder_Mead | Nelder-Mead Optimization of Parameters, Possibly (Box) Constrained |
| ngrps | Number of levels |
| ngrps.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| nlformula | Manipulate a Nonlinear Model Formula |
| nlmer | Fit Nonlinear Mixed-Effects Models |
| nlmerControl | Control of Mixed Model Fitting |
| nlmerMod-class | Class "merMod" of Fitted Mixed-Effect Models |
| nloptwrap | Wrapper for nlOpt optimizers |
| nlsResp | Generator objects for the response classes |
| nlsResp-class | Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"' |
| nobars | Omit terms separated by vertical bars in a formula |
| nobs | Class "merMod" of Fitted Mixed-Effect Models |
| nobs.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| optimizeGlmer | Modular functions for mixed model fits |
| optimizeLmer | Modular functions for mixed model fits |
| Pastes | Paste strength by batch and cask |
| Penicillin | Variation in penicillin testing |
| plot.merMod | diagnostic plots for merMod fits |
| predict.merMod | Predictions from a model at new data values |
| print.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| print.summary.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| profile-methods | Profile method for merMod objects |
| profile.merMod | Profile method for merMod objects |
| pvalues | Getting p-values for fitted models |
| qqmath.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| qqmath.ranef.mer | Extract the modes of the random effects |
| ranef | Extract the modes of the random effects |
| ranef.merMod | Extract the modes of the random effects |
| refit | Refit a model with a new response, by maximum likelihood criterion |
| refit.merMod | Refit a model with a new response, by maximum likelihood criterion |
| refitML | Refit a model by maximum likelihood criterion |
| refitML.merMod | Refit a model by maximum likelihood criterion |
| REMLcrit | Class "merMod" of Fitted Mixed-Effect Models |
| rePos | Generator object for the rePos (random-effects positions) class |
| rePos-class | Class '"rePos"' |
| residuals.glmResp | residuals of merMod objects |
| residuals.lmResp | residuals of merMod objects |
| residuals.merMod | residuals of merMod objects |
| show-method | Class "lmList" of 'lm' Objects on Common Model |
| show-method | Class "merMod" of Fitted Mixed-Effect Models |
| show.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| show.summary.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| sigma | Extract residual standard error |
| sigma.merMod | Extract residual standard error |
| simulate.formula | Simulate responses from a 'merMod' object |
| simulate.merMod | Simulate responses from a 'merMod' object |
| sleepstudy | Reaction times in a sleep deprivation study |
| splom.thpr | Mixed-Effects Profile Plots (Regular / Density / Pairs) |
| subbars | "Sub[stitute] Bars" |
| summary.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| summary.summary.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| terms.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| update.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| updateGlmerDevfun | Modular functions for mixed model fits |
| VarCorr | Extract Variance and Correlation Components |
| VarCorr.merMod | Extract Variance and Correlation Components |
| varianceProf | Transform Profile to the variance scale |
| vcov.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| vcov.summary.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| VerbAgg | Verbal Aggression item responses |
| weights.merMod | Class "merMod" of Fitted Mixed-Effect Models |
| xyplot.thpr | Mixed-Effects Profile Plots (Regular / Density / Pairs) |
| .makeCC | Control of Mixed Model Fitting |
| .simulateFun | Simulate responses from a 'merMod' object |