Basic Statistics
Measure | Value |
---|---|
Filename | Y38_control_GTGAAA_L005_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3448820 |
Filtered Sequences | 165714 |
Sequence length | 36 |
%GC | 19 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTG | 77030 | 2.233517550930463 | TruSeq Adapter, Index 1 (97% over 35bp) |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACAC | 109395 | 4204.779 | 125131.945 | 12 |
ACTCC | 107580 | 2771.5085 | 81655.3 | 23 |
CTCCA | 107200 | 2761.7192 | 81369.75 | 24 |
CCCCC | 55 | 1296.6907 | 11315.061 | 16 |
CACGT | 223055 | 420.2416 | 6267.3125 | 14 |
GCACA | 112270 | 315.58163 | 9395.4375 | 11 |
AGCAC | 111900 | 314.54163 | 9350.155 | 10 |
ACACG | 111680 | 313.9232 | 9331.364 | 13 |
CCCAC | 260 | 247.50446 | 4264.085 | 12 |
TCACG | 111865 | 210.75667 | 6171.673 | 30 |
ACGTC | 111600 | 210.2574 | 6197.7705 | 15 |
GTCAC | 111425 | 209.9277 | 6162.143 | 29 |
CAGTC | 110750 | 208.65599 | 6132.3345 | 27 |
TCCAG | 110445 | 208.08136 | 6129.345 | 25 |
CCAGT | 110405 | 208.00598 | 6115.912 | 26 |
CTCCC | 255 | 162.70052 | 4593.782 | 24 |
CGTCT | 111195 | 140.41432 | 4151.4507 | 16 |
CACCC | 140 | 133.27162 | 2284.3308 | 12 |
AACTC | 110645 | 115.09395 | 3390.2222 | 22 |
ACCCC | 85 | 80.91492 | 913.76025 | 23 |
CCTCC | 115 | 73.37474 | 1122.9244 | 24 |
CCCCA | 75 | 71.395515 | 1218.453 | 24 |
CGCCC | 35 | 60.345394 | 1379.1788 | 10 |
CCACC | 45 | 42.837307 | 304.57745 | 12 |
CACGC | 605 | 42.11797 | 857.5528 | 12 |
CGCAC | 525 | 36.54865 | 857.5528 | 12 |
CCACG | 525 | 36.54865 | 345.24854 | 13 |
CGCGC | 210 | 26.478765 | 60.52603 | 29 |
CGGAA | 124350 | 25.56208 | 704.4974 | 4 |
CTCCG | 520 | 24.263557 | 701.7593 | 24 |
AGAGC | 115950 | 23.835331 | 697.0917 | 8 |
GAGCA | 114725 | 23.583513 | 697.3577 | 9 |
CCGTC | 435 | 20.2974 | 134.36479 | 15 |
CCCAG | 280 | 19.492615 | 467.83887 | 26 |
CCCTC | 30 | 19.141237 | 408.28293 | 22 |
ATCGG | 133145 | 18.344856 | 478.15436 | 2 |
TCGGA | 129720 | 17.872957 | 476.71786 | 3 |
GATCG | 127265 | 17.534704 | 477.4836 | 1 |
GCTCC | 375 | 17.497757 | 492.68167 | 23 |
GCCCC | 10 | 17.24154 | 275.8318 | 11 |
GCACC | 240 | 16.707954 | 423.2177 | 11 |
GCCCA | 235 | 16.359873 | 334.11926 | 11 |
CGCTC | 350 | 16.33124 | 470.64258 | 2 |
ACGTG | 118015 | 16.26023 | 460.8833 | 32 |
GCCAC | 225 | 15.663708 | 233.88347 | 11 |
AGCCC | 200 | 13.923295 | 278.43674 | 10 |
CGGCG | 1410 | 13.001693 | 22.132683 | 28 |
TCGCG | 3750 | 12.79631 | 61.151318 | 30 |
CGTCG | 3405 | 11.61905 | 56.7739 | 16 |
CGCGG | 1235 | 11.388009 | 23.61169 | 31 |
CGCGT | 3275 | 11.175445 | 55.703175 | 31 |
CACCG | 155 | 10.790554 | 111.37001 | 14 |
GTCTG | 114475 | 10.571563 | 311.2827 | 17 |
CCAGC | 145 | 10.094389 | 267.3365 | 26 |
GCGCG | 1075 | 9.912638 | 22.131271 | 30 |
CGCGA | 1890 | 9.622241 | 15.476657 | 24 |
CCCCT | 15 | 9.570619 | 102.11159 | 31 |
ACGCG | 1870 | 9.520418 | 69.229546 | 13 |
CGACG | 1735 | 8.833116 | 13.850868 | 32 |
TGAAC | 115955 | 8.820892 | 254.464 | 20 |
AGTCA | 114905 | 8.741018 | 254.07971 | 28 |
CTGAA | 114510 | 8.71097 | 255.04341 | 19 |
GAACT | 114425 | 8.704503 | 254.85384 | 21 |
ACGCC | 125 | 8.70206 | 167.06082 | 23 |
CCCGC | 5 | 8.62077 | 275.87378 | 30 |
CCCCG | 5 | 8.62077 | 275.82538 | 12 |
CGTCC | 175 | 8.16562 | 223.94133 | 16 |
CCCGT | 170 | 7.932317 | 104.50461 | 14 |
ACCCG | 110 | 7.6578126 | 155.91869 | 13 |
CTCAC | 295 | 7.59988 | 140.12698 | 12 |
CGCCA | 105 | 7.3097305 | 155.93703 | 24 |
ACCAC | 180 | 6.918599 | 92.23485 | 13 |
CACGG | 1345 | 6.8475733 | 146.6605 | 31 |
GGCAC | 1310 | 6.669384 | 161.27019 | 10 |
CCACA | 170 | 6.534232 | 30.750387 | 26 |
CTTCC | 360 | 6.2162185 | 168.50337 | 6 |
GCACG | 1185 | 6.0329924 | 66.7877 | 11 |
GGGGG | 121320 | 5.9829855 | 8.21058 | 1 |
TCCCA | 230 | 5.92533 | 169.00287 | 25 |
TCTGA | 114765 | 5.851559 | 171.2292 | 18 |
ACACC | 150 | 5.765499 | 79.93686 | 13 |
CGGAC | 1050 | 5.3456893 | 29.32011 | 4 |
CAGCC | 75 | 5.2212358 | 144.81776 | 27 |
TCCCG | 110 | 5.1326756 | 82.12553 | 30 |
GCGCC | 40 | 5.0435743 | 100.85916 | 9 |
TCCAC | 195 | 5.0236497 | 65.95234 | 25 |
CACCA | 125 | 4.8045826 | 92.23484 | 12 |
CACTC | 175 | 4.5084033 | 49.468918 | 27 |
GCGTC | 1225 | 4.1801276 | 45.309937 | 15 |
AGCGC | 800 | 4.0729065 | 62.71619 | 10 |
CGGTC | 1155 | 3.9412632 | 49.14308 | 27 |
ACGGC | 715 | 3.6401603 | 52.12623 | 15 |
GTCGC | 1045 | 3.565905 | 49.14038 | 29 |
AACCC | 90 | 3.4592996 | 49.19128 | 22 |
CACAT | 3300 | 3.4326904 | 90.19409 | 12 |
CCCGG | 25 | 3.1522343 | 40.349987 | 26 |
CGGGC | 330 | 3.0429494 | 7.3769407 | 25 |
TCGGC | 880 | 3.0028675 | 7.0966344 | 3 |
GCGCA | 585 | 2.9783127 | 65.15872 | 11 |
ACCTC | 115 | 2.962665 | 45.33658 | 23 |
CCACT | 115 | 2.9626648 | 78.3201 | 26 |
GGAAG | 196595 | 2.9554608 | 53.641834 | 5 |
CCAAC | 75 | 2.8827498 | 24.60031 | 26 |
CGAGC | 565 | 2.8764899 | 21.990911 | 8 |
CGATC | 1450 | 2.731839 | 19.591825 | 10 |
TACAC | 2575 | 2.6785386 | 69.725685 | 12 |
GCGGC | 280 | 2.5818963 | 7.3760214 | 23 |
CATAC | 2445 | 2.5433114 | 69.8921 | 12 |
CCGGC | 20 | 2.5217872 | 20.176456 | 27 |
ACCCA | 65 | 2.4983828 | 18.44753 | 23 |
TTCCA | 3570 | 2.4890177 | 73.06514 | 24 |
ATTCC | 3555 | 2.4785593 | 73.05878 | 23 |
GACCC | 35 | 2.4365766 | 33.41701 | 30 |
ACTCT | 3455 | 2.4088392 | 68.93179 | 23 |
CTCTA | 3400 | 2.3704932 | 68.26849 | 24 |
ACTTC | 3365 | 2.3460906 | 64.13557 | 23 |
GTCCC | 50 | 2.3330343 | 67.19487 | 29 |
TGCCC | 50 | 2.3330343 | 37.322475 | 20 |
CTTCA | 3260 | 2.2728846 | 63.806503 | 24 |
CCCGA | 30 | 2.0884945 | 55.7052 | 32 |
GAAGA | 249120 | 2.0677354 | 29.716759 | 6 |
TCGGG | 7890 | 1.9689419 | 5.9084454 | 3 |
GGCGC | 210 | 1.9364227 | 7.37723 | 29 |
GCCCG | 15 | 1.8913406 | 20.175346 | 29 |
GGCCC | 15 | 1.8913404 | 20.17625 | 28 |
CCGGT | 550 | 1.8767922 | 46.40955 | 26 |
AAGAG | 225590 | 1.8724327 | 29.491714 | 7 |
GCCCT | 40 | 1.8664275 | 29.858023 | 21 |
TCCGG | 545 | 1.8597304 | 48.04649 | 25 |
CGTGA | 13300 | 1.832488 | 25.51153 | 32 |
GAGCC | 350 | 1.7818965 | 35.837196 | 9 |
CGGAG | 4745 | 1.7666603 | 9.232029 | 4 |
CCCAA | 45 | 1.7296498 | 12.297979 | 12 |
CAACC | 45 | 1.7296497 | 12.298085 | 19 |
CACCT | 65 | 1.6745497 | 8.245955 | 31 |
CTGCC | 35 | 1.6331241 | 37.323555 | 19 |
AACGC | 580 | 1.630332 | 9.443213 | 22 |
ACGGG | 4245 | 1.5805001 | 11.618903 | 32 |
CGGGA | 4190 | 1.5600221 | 6.6113234 | 4 |
TCACC | 60 | 1.5457385 | 12.366316 | 30 |
CTCGC | 30 | 1.3998206 | 14.929422 | 19 |
CGCCT | 30 | 1.3998206 | 29.858847 | 16 |
GAGCG | 3575 | 1.3310454 | 5.777706 | 9 |
CGAAC | 470 | 1.321131 | 8.544044 | 19 |
AGATC | 17155 | 1.3050098 | 6.4522715 | 32 |
CTCCT | 75 | 1.2950457 | 22.10156 | 24 |
CCATC | 50 | 1.2881153 | 20.610554 | 26 |
CGGCT | 370 | 1.2625692 | 32.208267 | 16 |
CCGCG | 10 | 1.2608937 | 20.179237 | 31 |
CGGCC | 10 | 1.2608936 | 20.171423 | 12 |
GCCGC | 10 | 1.2608936 | 20.174963 | 30 |
CCAGG | 240 | 1.2218719 | 31.769764 | 26 |
TACGT | 23345 | 1.1902988 | 5.442698 | 31 |
TTACG | 23090 | 1.177297 | 5.506811 | 30 |
AGCTC | 620 | 1.1680967 | 22.002014 | 22 |
ACGTT | 22250 | 1.1344678 | 6.4276214 | 15 |
CAGGC | 220 | 1.1200494 | 26.884058 | 27 |
ACGCT | 580 | 1.0927355 | 19.321453 | 1 |
ATACG | 14030 | 1.0672859 | 6.0848684 | 13 |
CCGAC | 15 | 1.0442472 | 11.1392145 | 29 |
ACCGC | 15 | 1.0442472 | 11.141362 | 31 |
GACAC | 370 | 1.0400393 | 6.7453775 | 9 |
CCTAC | 40 | 1.0304922 | 8.2427635 | 12 |
GACTC | 540 | 1.0173745 | 23.8104 | 22 |
TCTCG | 700 | 0.8839429 | 5.6574216 | 30 |
TCCGA | 460 | 0.8666523 | 18.988588 | 8 |
AGGGC | 2160 | 0.804212 | 12.508382 | 8 |
CCGAT | 425 | 0.8007114 | 18.98867 | 9 |
CTCGT | 620 | 0.78292084 | 5.0523386 | 31 |
TCTCC | 45 | 0.7770273 | 8.287363 | 23 |
AGCCA | 250 | 0.7027292 | 8.993992 | 10 |
CCGCA | 10 | 0.69616485 | 11.141364 | 31 |
CAGCA | 230 | 0.6465109 | 6.2971277 | 27 |
CGCTG | 185 | 0.63128465 | 13.6475725 | 16 |
CGCCG | 5 | 0.63044685 | 20.171747 | 8 |
TTCCG | 480 | 0.60613227 | 12.727168 | 7 |
CTCTC | 35 | 0.60435456 | 5.525389 | 24 |
CACAG | 215 | 0.60434717 | 6.2955575 | 12 |
GGAGC | 1515 | 0.56406534 | 6.9689555 | 8 |
GCTCT | 445 | 0.5619351 | 12.524877 | 3 |
GCCAG | 110 | 0.5600246 | 10.589691 | 25 |
GGGCA | 1470 | 0.547311 | 12.687128 | 9 |
GCTCA | 285 | 0.53694767 | 10.8507 | 11 |
CGGCA | 105 | 0.5345689 | 7.3300266 | 4 |
TACCC | 20 | 0.5152461 | 16.488419 | 30 |
ACCCT | 20 | 0.5152461 | 12.368933 | 31 |
CACGA | 180 | 0.50596505 | 5.8481383 | 31 |
TCGCC | 10 | 0.4666069 | 7.466097 | 29 |
CCGCT | 10 | 0.4666069 | 14.929294 | 13 |
GAACC | 155 | 0.43569216 | 8.9934845 | 21 |
TAGTC | 7870 | 0.40127015 | 5.3277245 | 27 |
CCTGA | 210 | 0.39564562 | 7.8365035 | 19 |
AGTAC | 5140 | 0.3910085 | 5.2088437 | 10 |
CCCTA | 15 | 0.38643458 | 12.368575 | 32 |
ACATG | 5075 | 0.38606384 | 6.9124107 | 13 |
AGTCC | 195 | 0.36738527 | 7.5368376 | 28 |
CCGTG | 105 | 0.3582967 | 5.460937 | 32 |
CGACC | 5 | 0.3480824 | 11.13747 | 10 |
CCTCT | 20 | 0.34534553 | 5.5249095 | 23 |
CCAAG | 115 | 0.32325548 | 7.1961956 | 26 |
GTACA | 4175 | 0.31759933 | 5.354809 | 11 |
GTCCA | 165 | 0.31086442 | 5.1248183 | 29 |
GCATA | 3970 | 0.3020046 | 5.415659 | 11 |
CTGAC | 160 | 0.30144432 | 6.329484 | 19 |
TCCTG | 235 | 0.29675224 | 5.252444 | 18 |
AGCAT | 3865 | 0.29401708 | 5.3670564 | 10 |
GCCTC | 5 | 0.23330344 | 7.464765 | 8 |
CCTGC | 5 | 0.23330344 | 7.4645057 | 21 |
CCTCG | 5 | 0.23330344 | 7.467321 | 32 |
CTAGT | 4480 | 0.2284232 | 5.1968064 | 26 |
TCTAG | 4415 | 0.22510901 | 5.1966934 | 25 |
GTCCT | 160 | 0.20204408 | 5.050427 | 17 |