Basic Statistics
Measure | Value |
---|---|
Filename | Y38_control_GTGAAA_L005_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3448820 |
Filtered Sequences | 165714 |
Sequence length | 36 |
%GC | 18 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGAT | 21905 | 0.6351447741546384 | Illumina Single End PCR Primer 1 (100% over 36bp) |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 9464 | 0.27441269767630666 | No Hit |
GATCGGAAGAGCGTCGGGTAGGGAAAGAGGGTAGAT | 7464 | 0.2164218486322858 | Illumina Single End PCR Primer 1 (96% over 29bp) |
GATCGGAAGAGCGTCGGGTAGGGAAAGAGTGTAGAT | 6997 | 0.20288098538050695 | Illumina Single End PCR Primer 1 (97% over 36bp) |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 58845 | 240021.44 | 1076072.0 | 27 |
GAGGG | 31725 | 4936.8525 | 91307.19 | 27 |
AGGGG | 22330 | 3474.8594 | 28992.459 | 26 |
GGGCG | 6985 | 3104.4487 | 43610.176 | 9 |
GGGGA | 16740 | 2604.9775 | 16976.617 | 20 |
GGGGT | 10600 | 2494.8018 | 40585.24 | 28 |
CGGGG | 5050 | 2244.4475 | 29205.139 | 15 |
GGCGG | 4590 | 2040.0032 | 29889.113 | 12 |
GGGAG | 12720 | 1979.4094 | 10850.94 | 4 |
GCGGG | 4380 | 1946.6693 | 29925.191 | 13 |
GGGGC | 3995 | 1775.5581 | 24685.883 | 10 |
GGAGG | 10190 | 1585.7062 | 9672.899 | 18 |
GGGTG | 6175 | 1453.3397 | 20797.404 | 27 |
GAGCG | 73895 | 1252.9714 | 37914.098 | 9 |
TGGGG | 4655 | 1095.5947 | 5768.69 | 20 |
TCGGG | 31520 | 808.33984 | 22957.398 | 14 |
GGTGG | 3295 | 775.5069 | 4296.1626 | 12 |
GTGGG | 3260 | 767.26935 | 4449.269 | 18 |
TAGGG | 84825 | 761.6617 | 23391.266 | 19 |
CGGGT | 28385 | 727.94183 | 22296.996 | 15 |
GTCGG | 28165 | 722.29987 | 22332.762 | 13 |
GTAGG | 69580 | 624.7736 | 18991.287 | 18 |
GGGAA | 93245 | 553.58215 | 16294.989 | 21 |
GGAAG | 93040 | 552.3651 | 15285.469 | 5 |
GAGTG | 57045 | 512.2192 | 15629.301 | 27 |
AGGGA | 85570 | 508.01678 | 15664.107 | 20 |
GGGTA | 53620 | 481.46533 | 7799.632 | 16 |
GGTAG | 52280 | 469.43323 | 7535.167 | 17 |
GCGTC | 82205 | 229.71196 | 7047.699 | 11 |
AGGGT | 25040 | 224.83948 | 5411.4194 | 28 |
CGTCG | 77005 | 215.18121 | 6485.5864 | 12 |
AGAGG | 24365 | 144.6515 | 3510.861 | 26 |
AAGGG | 19605 | 116.39207 | 1465.4547 | 25 |
ATCGG | 104560 | 102.30136 | 2836.8816 | 2 |
GGCGT | 3950 | 101.29894 | 2380.8765 | 10 |
TCGGA | 99535 | 97.3849 | 2824.9421 | 3 |
GATCG | 97460 | 95.35472 | 2670.7458 | 1 |
GGTCG | 3205 | 82.19319 | 2040.844 | 12 |
GGGTC | 3195 | 81.93674 | 2114.7979 | 11 |
AGCGT | 79870 | 78.1447 | 2390.0107 | 10 |
GTCGT | 51190 | 75.75 | 2257.3118 | 13 |
CGGCG | 1430 | 69.2519 | 1147.6548 | 11 |
AGGGC | 3995 | 67.73965 | 1609.5931 | 8 |
CGGGA | 3945 | 66.89184 | 1166.173 | 3 |
GCGGC | 1375 | 66.58837 | 1077.4858 | 10 |
CGGAA | 98725 | 63.864758 | 1881.4976 | 4 |
CGTGT | 42920 | 63.512207 | 1883.2583 | 15 |
TCGTG | 42895 | 63.475212 | 1889.1953 | 14 |
TGTAG | 110980 | 57.500637 | 1055.6073 | 30 |
GTGTA | 109825 | 56.90221 | 1066.7561 | 29 |
GAAGG | 9405 | 55.836136 | 832.1574 | 6 |
GGTGT | 4030 | 54.729942 | 1180.6884 | 28 |
AGAGC | 82795 | 53.55972 | 1614.4164 | 8 |
TTGGG | 2860 | 38.8406 | 526.50616 | 19 |
AAGAG | 167160 | 37.861423 | 581.78265 | 7 |
AGTGT | 65850 | 34.118008 | 1035.8613 | 28 |
GTAGA | 92780 | 31.78342 | 957.73566 | 31 |
CCGGG | 625 | 30.267447 | 472.3131 | 14 |
GCGTG | 1075 | 27.568697 | 262.4971 | 13 |
GCCGG | 565 | 27.361767 | 472.45697 | 13 |
GGAGA | 4385 | 26.033115 | 189.88681 | 31 |
GGGTT | 1840 | 24.988356 | 132.6357 | 21 |
GGGCC | 500 | 24.213953 | 170.59734 | 11 |
CGTGG | 935 | 23.978355 | 234.06055 | 12 |
GGAAA | 105735 | 23.94878 | 638.1663 | 22 |
GTTGG | 1740 | 23.630295 | 313.2989 | 18 |
AGCGG | 1300 | 22.042938 | 320.27084 | 9 |
GTGTG | 1620 | 22.00062 | 295.2663 | 29 |
GCGCG | 450 | 21.792557 | 116.27765 | 9 |
ACGGG | 1265 | 21.449474 | 390.53235 | 3 |
AGAGT | 61905 | 21.206646 | 634.78973 | 26 |
TGTGG | 1485 | 20.167234 | 249.74031 | 30 |
GAAGA | 88100 | 19.954485 | 570.51904 | 6 |
GAAAG | 86295 | 19.545654 | 580.0392 | 23 |
GAGAG | 3260 | 19.35415 | 171.74515 | 6 |
GAGGT | 2135 | 19.170618 | 351.8136 | 31 |
CGGGC | 385 | 18.644743 | 170.34042 | 15 |
GACGG | 1095 | 18.566936 | 360.60645 | 2 |
GGACG | 1075 | 18.227814 | 355.1439 | 1 |
GTGGT | 1285 | 17.45111 | 169.40367 | 31 |
GGCCG | 360 | 17.43405 | 155.08556 | 12 |
GGTTG | 1260 | 17.111593 | 104.436005 | 17 |
TGGGT | 1230 | 16.704176 | 139.50621 | 32 |
TGGGA | 1700 | 15.264661 | 179.80583 | 20 |
CGCGG | 315 | 15.25479 | 69.78848 | 12 |
GTGGA | 1685 | 15.129973 | 78.97856 | 31 |
CAGGG | 835 | 14.158348 | 268.92398 | 19 |
ATGGG | 1545 | 13.872883 | 152.19481 | 2 |
GATGG | 1530 | 13.7381935 | 142.12823 | 1 |
GGGCA | 755 | 12.80186 | 171.032 | 21 |
GGCGC | 260 | 12.591256 | 69.76527 | 10 |
TGGTG | 920 | 12.494179 | 134.622 | 14 |
TGGAG | 1240 | 11.134223 | 54.665203 | 17 |
CGCCG | 2040 | 10.764739 | 131.80852 | 12 |
GGGCT | 385 | 9.873441 | 98.5439 | 21 |
GGGAC | 555 | 9.41064 | 143.8841 | 21 |
GCGGT | 365 | 9.360535 | 82.005356 | 14 |
TTAGG | 17520 | 9.077412 | 273.66757 | 18 |
GCAGG | 520 | 8.817175 | 190.15187 | 18 |
CGGTG | 325 | 8.3347225 | 106.60571 | 15 |
CTGGG | 325 | 8.3347225 | 78.06019 | 19 |
AGGCG | 470 | 7.9693694 | 40.725178 | 12 |
GGGAT | 875 | 7.856811 | 96.32162 | 21 |
AGGAG | 1310 | 7.7772818 | 27.53122 | 30 |
CCCCC | 119015 | 7.456418 | 8.441384 | 17 |
GTGCG | 285 | 7.308911 | 45.15541 | 9 |
TGGGC | 285 | 7.308911 | 135.57426 | 20 |
GGCAG | 430 | 7.291126 | 65.19684 | 17 |
GAGGA | 1210 | 7.183596 | 35.116673 | 29 |
AGTGG | 800 | 7.183369 | 34.440216 | 28 |
CGGAG | 420 | 7.1215644 | 70.50693 | 4 |
GGCTG | 260 | 6.6677785 | 40.993538 | 5 |
GAGCT | 6705 | 6.5601625 | 196.54811 | 9 |
CCGCG | 1240 | 6.5432725 | 16.048567 | 9 |
GAGGC | 365 | 6.188979 | 38.01089 | 11 |
GGAGT | 680 | 6.1058645 | 24.395157 | 28 |
TCGCG | 2115 | 5.910113 | 26.359783 | 14 |
CGAGG | 345 | 5.8498564 | 16.265848 | 15 |
GCGCC | 1095 | 5.778132 | 130.12115 | 11 |
GCTGG | 225 | 5.7701926 | 53.410614 | 18 |
CGCGA | 3105 | 5.7367415 | 11.8108225 | 28 |
GTGAG | 605 | 5.4324236 | 27.261244 | 27 |
AGGTG | 595 | 5.3426313 | 30.12975 | 26 |
AAGCG | 8125 | 5.2560263 | 144.13939 | 9 |
GCGAG | 305 | 5.1716123 | 21.675539 | 27 |
GTGGC | 195 | 5.000834 | 36.911236 | 31 |
CGACG | 2665 | 4.9238067 | 11.833395 | 12 |
GGAGC | 290 | 4.917271 | 35.251514 | 31 |
CGCGC | 920 | 4.854686 | 14.336351 | 28 |
GGATG | 540 | 4.848775 | 30.141516 | 5 |
TGAGG | 530 | 4.7589827 | 24.454771 | 18 |
TGCGG | 185 | 4.7443805 | 12.3148775 | 10 |
CGCGT | 1690 | 4.7225013 | 24.572392 | 15 |
TGGCG | 180 | 4.616154 | 20.543146 | 17 |
GGTGA | 485 | 4.354918 | 17.22011 | 28 |
GCGGA | 255 | 4.323807 | 18.982828 | 13 |
ACGCG | 2270 | 4.194011 | 7.0875363 | 7 |
GGCGA | 230 | 3.8999047 | 16.28211 | 22 |
GGTGC | 150 | 3.8467953 | 20.492468 | 28 |
AAGTG | 9210 | 3.1550474 | 81.83541 | 27 |
AAAGG | 13115 | 2.9705226 | 49.31057 | 24 |
GCCGT | 940 | 2.6267166 | 43.79739 | 13 |
GAACG | 3780 | 2.4452653 | 25.162266 | 9 |
GCCCG | 455 | 2.4009588 | 6.757567 | 23 |
GAGTT | 4625 | 2.3962915 | 59.526535 | 27 |
TAGTG | 4410 | 2.2848964 | 38.596603 | 19 |
GCTTC | 13745 | 2.2162557 | 63.048477 | 11 |
GTCCG | 785 | 2.193588 | 5.3719854 | 19 |
TTTGG | 2795 | 2.1902385 | 16.069265 | 18 |
GACCG | 1170 | 2.1616712 | 24.518213 | 1 |
CTCGG | 770 | 2.1516724 | 32.741753 | 32 |
AGCGC | 1155 | 2.1339571 | 45.83914 | 10 |
TAGAT | 107805 | 2.1309578 | 61.25858 | 32 |
TATGG | 4015 | 2.0802402 | 54.948284 | 19 |
GCCGC | 375 | 1.9788121 | 10.127245 | 13 |
CCGTG | 700 | 1.956066 | 38.42274 | 14 |
TTCGG | 1255 | 1.8571253 | 33.36978 | 13 |
CGTCT | 10960 | 1.7671999 | 34.36361 | 12 |
AGGTC | 1805 | 1.7660094 | 41.77256 | 32 |
CGTTT | 20355 | 1.7380341 | 32.14974 | 15 |
TGGAA | 5040 | 1.7265406 | 38.173874 | 21 |
GCGAC | 920 | 1.6997755 | 11.537778 | 11 |
ACCGG | 920 | 1.6997755 | 28.066162 | 2 |
TCGTT | 19055 | 1.6270322 | 31.986292 | 14 |
CCGGA | 875 | 1.6166345 | 28.073452 | 3 |
GCCGA | 865 | 1.5981582 | 5.023303 | 13 |
CGGTT | 1070 | 1.5833658 | 26.261517 | 15 |
GTCGC | 565 | 1.5788244 | 23.239431 | 13 |
TCGGT | 1055 | 1.5611691 | 27.917976 | 14 |
GCGTT | 1055 | 1.5611691 | 8.767041 | 11 |
GGTTT | 1980 | 1.5515823 | 7.6501985 | 22 |
GTGTT | 1955 | 1.5319916 | 12.402232 | 29 |
CCCGG | 290 | 1.5302815 | 10.144509 | 18 |
GAGCA | 2335 | 1.510501 | 36.552586 | 9 |
GTGAA | 4390 | 1.5038717 | 27.039827 | 21 |
CTTCG | 9285 | 1.4971215 | 24.578629 | 12 |
ATGGA | 4320 | 1.4798919 | 36.933193 | 20 |
GCGTA | 1415 | 1.384434 | 8.13421 | 16 |
AGGAA | 6065 | 1.3737111 | 16.971537 | 21 |
AGTGA | 3915 | 1.3411521 | 26.341652 | 20 |
GTAAG | 3855 | 1.320598 | 17.287544 | 18 |
GGCCC | 245 | 1.2928241 | 10.134163 | 22 |
GTAGT | 2435 | 1.2616152 | 21.581306 | 18 |
TTGGT | 1605 | 1.257722 | 5.900149 | 20 |
TGTTG | 1605 | 1.2577219 | 12.177845 | 17 |
TAGGT | 2355 | 1.2201657 | 19.422808 | 19 |
GCGCT | 435 | 1.2155552 | 7.594329 | 29 |
TGGTT | 1545 | 1.2107043 | 11.194205 | 32 |
GGTAA | 3515 | 1.204125 | 13.437643 | 21 |
GCGAT | 1225 | 1.1985383 | 6.2564917 | 29 |
GTCGA | 1215 | 1.1887543 | 5.9457645 | 31 |
CGGCC | 225 | 1.1872873 | 7.5953565 | 4 |
TAAGG | 3425 | 1.173294 | 23.378899 | 19 |
TGAAG | 3390 | 1.1613041 | 19.165577 | 5 |
TAGCG | 1165 | 1.1398344 | 22.552134 | 9 |
GTATG | 2160 | 1.119133 | 25.482542 | 18 |
TATCG | 19555 | 1.1039854 | 12.763268 | 1 |
ATAGG | 3215 | 1.1013547 | 20.580408 | 18 |
TCTGG | 740 | 1.095038 | 19.873814 | 14 |
TTGTG | 1370 | 1.0735694 | 5.900321 | 19 |
GAGAT | 3130 | 1.0722365 | 11.395093 | 31 |
CCGGC | 200 | 1.0553666 | 5.0721583 | 19 |
GGTTA | 2030 | 1.0517777 | 8.946391 | 16 |
CGTGC | 375 | 1.0478922 | 14.743435 | 15 |
AAGGA | 4620 | 1.0464213 | 17.01739 | 20 |
TGTGT | 1330 | 1.0422245 | 7.514106 | 28 |
GTTGT | 1310 | 1.026552 | 8.020434 | 31 |
TAGGA | 2975 | 1.0191386 | 20.689777 | 19 |
CTGGT | 680 | 1.0062512 | 19.87358 | 15 |
CGTGA | 1025 | 1.0028585 | 14.391398 | 15 |
AGAGA | 4425 | 1.0022542 | 11.937572 | 20 |
TTCGT | 11545 | 0.98578256 | 11.552988 | 13 |
TTTAG | 32770 | 0.9797022 | 17.860727 | 17 |
GTTAG | 1875 | 0.9714696 | 9.877887 | 17 |
AACGG | 1480 | 0.95740545 | 12.309399 | 2 |
TAGAG | 2750 | 0.9420608 | 16.189613 | 19 |
GGCCT | 330 | 0.92214537 | 7.150595 | 13 |
GGTAT | 1745 | 0.90411437 | 12.36811 | 17 |
AGGTT | 1740 | 0.90152377 | 7.5350437 | 28 |
ACGTC | 8415 | 0.89711374 | 5.633278 | 11 |
GAGAA | 3955 | 0.89580005 | 12.075902 | 21 |
TCGGC | 320 | 0.8942014 | 8.045005 | 3 |
AAAGA | 100425 | 0.8677895 | 21.56252 | 24 |
GTCTG | 585 | 0.865672 | 19.406538 | 13 |
CATCG | 8065 | 0.85980064 | 6.8451567 | 12 |
AGGTA | 2430 | 0.8324392 | 13.774489 | 20 |
GTGTC | 560 | 0.8286774 | 6.6238513 | 29 |
CGTCA | 7755 | 0.8267519 | 6.811016 | 12 |
GTTTA | 26950 | 0.80570567 | 11.251756 | 16 |
GAGCC | 435 | 0.8036981 | 11.533938 | 9 |
CGTAG | 810 | 0.7925029 | 7.994202 | 17 |
GGAAT | 2310 | 0.7913311 | 14.01825 | 5 |
ACGGA | 1220 | 0.7892125 | 10.96752 | 3 |
TGGTA | 1520 | 0.787538 | 6.958304 | 16 |
AGCTT | 13890 | 0.78416556 | 22.157822 | 10 |
AGATC | 20765 | 0.7750966 | 7.5130286 | 32 |
GGCTT | 520 | 0.7694863 | 5.9206696 | 22 |
GTCTT | 8875 | 0.75780165 | 17.165611 | 13 |
TTGGA | 1445 | 0.7486792 | 5.220798 | 3 |
GGTTC | 505 | 0.7472895 | 5.923677 | 11 |
ATTGG | 1440 | 0.7460886 | 9.361859 | 2 |
GATTG | 1415 | 0.73313564 | 8.610235 | 27 |
CGGCA | 395 | 0.72979486 | 5.0316234 | 20 |
CACGG | 385 | 0.711319 | 5.022366 | 2 |
CGGAC | 365 | 0.6743674 | 7.978106 | 4 |
TTGCG | 435 | 0.6437048 | 5.4385 | 27 |
GGTCC | 230 | 0.6427074 | 6.2610435 | 22 |
GTGCA | 645 | 0.63106716 | 7.6649294 | 16 |
AGAAG | 2735 | 0.6194723 | 7.530702 | 5 |
GGCCA | 335 | 0.61894006 | 5.322425 | 22 |
GGCAA | 945 | 0.6113163 | 7.2471204 | 22 |
CAGCG | 325 | 0.60046417 | 6.5063243 | 9 |
GGAAC | 920 | 0.5951439 | 5.694166 | 22 |
GAGTC | 600 | 0.5870392 | 6.2665663 | 11 |
AGGCC | 315 | 0.58198833 | 5.023252 | 4 |
GGACA | 850 | 0.5498612 | 7.6612406 | 22 |
GAGTA | 1505 | 0.5155642 | 7.940892 | 29 |
TGCAG | 500 | 0.4891993 | 7.523955 | 17 |
AAAGC | 17675 | 0.436216 | 10.307457 | 8 |
CTTGT | 5050 | 0.43119982 | 8.491353 | 15 |
GCATC | 3960 | 0.42217124 | 7.5622497 | 11 |
TCTTG | 4800 | 0.4098533 | 8.518756 | 14 |
AGTAG | 1195 | 0.40936822 | 6.683085 | 30 |
AGTTT | 12625 | 0.37744093 | 7.0760207 | 28 |
ATCTG | 5830 | 0.329135 | 6.4906793 | 2 |
TCTGA | 5805 | 0.3277236 | 6.501393 | 3 |
TTAGA | 16085 | 0.31794867 | 5.901855 | 31 |
AAGCT | 7805 | 0.29133776 | 6.530604 | 9 |