Basic Statistics
Measure | Value |
---|---|
Filename | Y54_Mix_GTGGCC_L005_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15646291 |
Filtered Sequences | 787245 |
Sequence length | 36 |
%GC | 23 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGAT | 388364 | 2.48214736642697 | Illumina Single End PCR Primer 1 (100% over 36bp) |
GATCGGAAGAGCGTCGGGTAGGGAAAGAGGGTAGAT | 133916 | 0.855896135384418 | Illumina Single End PCR Primer 1 (96% over 29bp) |
GATCGGAAGAGCGTCGGGTAGGGAAAGAGTGTAGAT | 129784 | 0.8294873206691604 | Illumina Single End PCR Primer 1 (97% over 36bp) |
GATCGGAAGAGCGTCGTTTAGGGAAAGAGTGTAGAT | 60260 | 0.3851392000826266 | Illumina Single End PCR Primer 1 (97% over 36bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGGGTAGAT | 54305 | 0.3470790617405748 | Illumina Single End PCR Primer 1 (97% over 36bp) |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 42225 | 0.2698722655739945 | No Hit |
GATCGGAAGAGCGTCGGGTAGGGAAAGGGGGTAGAT | 29449 | 0.18821713082033306 | Illumina Single End PCR Primer 1 (96% over 27bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAAAGTGTAGAT | 27591 | 0.17634211200597 | Illumina Single End PCR Primer 1 (97% over 36bp) |
GATCGGAAGAGCGTCGTATAGGGAAAGAGTGTAGAT | 17352 | 0.1109016827055051 | Illumina Single End PCR Primer 1 (97% over 36bp) |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 653265 | 2946.7627 | 15033.129 | 27 |
GAGGG | 447480 | 232.65047 | 5403.342 | 27 |
GAGCG | 1274960 | 198.02425 | 6275.838 | 9 |
TAGGG | 1451965 | 134.60364 | 4262.976 | 19 |
GGGGT | 160090 | 128.76276 | 2159.75 | 28 |
AGGGG | 238770 | 124.13952 | 1491.061 | 26 |
TCGGG | 513505 | 123.385 | 3819.105 | 14 |
GTCGG | 492245 | 118.27665 | 3731.6794 | 13 |
CGGGT | 488770 | 117.44167 | 3713.667 | 15 |
GGGCG | 84235 | 113.511505 | 2351.2546 | 9 |
GTAGG | 1181270 | 109.50901 | 3459.8257 | 18 |
GCGTC | 1428795 | 102.56027 | 3260.1855 | 11 |
CGTCG | 1317315 | 94.55812 | 2988.5042 | 12 |
GGGAA | 1557400 | 93.3265 | 2812.8838 | 21 |
GGAAG | 1540825 | 92.33325 | 2802.3718 | 5 |
GAGTG | 987695 | 91.56374 | 2881.3364 | 27 |
AGGGA | 1476220 | 88.46182 | 2789.1074 | 20 |
GGGTA | 912720 | 84.61321 | 1429.478 | 16 |
GGTAG | 895290 | 82.997375 | 1382.5234 | 17 |
GGGGA | 156890 | 81.56908 | 866.10535 | 21 |
GGGTG | 90340 | 72.661804 | 1198.5425 | 27 |
CGGGG | 51025 | 68.75913 | 1616.0531 | 15 |
GGGAG | 100850 | 52.433178 | 554.63007 | 17 |
TGGGG | 65140 | 52.393074 | 337.39658 | 19 |
GGCGG | 37430 | 50.43908 | 1121.1244 | 13 |
GCGGG | 35095 | 47.29254 | 1088.6838 | 14 |
ATCGG | 1699085 | 47.055157 | 1460.4366 | 2 |
TCGGA | 1672325 | 46.31406 | 1455.0382 | 3 |
GGGGC | 32945 | 44.395283 | 903.05566 | 11 |
GATCG | 1571145 | 43.51194 | 1350.887 | 1 |
GGAGG | 82465 | 42.874588 | 607.6632 | 18 |
AGGGT | 419555 | 38.89462 | 1005.19055 | 28 |
AGCGT | 1384120 | 38.332394 | 1216.3529 | 10 |
GTCGT | 869105 | 37.235764 | 1174.924 | 13 |
GGTGG | 44335 | 35.659298 | 305.2407 | 12 |
GTGGG | 43315 | 34.8389 | 270.41254 | 18 |
TGTAG | 1909340 | 31.561256 | 605.6175 | 30 |
GTGTA | 1886790 | 31.188501 | 609.31213 | 29 |
TCGTG | 723320 | 30.989777 | 978.3364 | 14 |
CGTGT | 721540 | 30.913515 | 973.7383 | 15 |
CGGAA | 1675940 | 30.002323 | 945.2088 | 4 |
AGAGC | 1419675 | 25.41472 | 804.45703 | 8 |
AGAGG | 384105 | 23.017324 | 629.9069 | 26 |
AAGAG | 2852485 | 19.701658 | 318.59097 | 7 |
AGTGT | 1140620 | 18.854366 | 593.12 | 28 |
GTAGA | 1613145 | 17.23648 | 534.12085 | 31 |
AAGGG | 286665 | 17.178274 | 235.51433 | 25 |
GGCGT | 60350 | 14.500898 | 403.15765 | 10 |
GGAAA | 1819450 | 12.5666485 | 344.11993 | 22 |
GGTCG | 49970 | 12.006792 | 339.5858 | 12 |
GGGTC | 49390 | 11.867429 | 356.71054 | 11 |
AGAGT | 1059020 | 11.315645 | 352.35062 | 26 |
GAAGA | 1473075 | 10.174293 | 313.451 | 6 |
GAAAG | 1459980 | 10.083849 | 311.09946 | 23 |
AGGGC | 60360 | 9.374995 | 266.8859 | 8 |
GGTGT | 60990 | 8.746918 | 216.21916 | 28 |
GAAGG | 130155 | 7.7994814 | 153.89655 | 6 |
CCCCC | 631235 | 6.7749257 | 8.16771 | 26 |
GCGGC | 12320 | 4.959634 | 126.47645 | 11 |
CGGCG | 12195 | 4.9093127 | 121.38281 | 12 |
TTAGG | 288280 | 4.7652473 | 149.99155 | 18 |
TTGGG | 33040 | 4.738452 | 68.65962 | 19 |
CGGGA | 24170 | 3.7540371 | 60.687187 | 4 |
TAGAT | 1748220 | 3.3307464 | 104.418495 | 32 |
TGTGG | 22285 | 3.196017 | 50.140945 | 30 |
GTGTG | 22180 | 3.1809585 | 52.80915 | 29 |
GGGTT | 21595 | 3.0970602 | 22.541515 | 16 |
CTCTC | 797810 | 3.0504963 | 3.6578372 | 31 |
GAGCT | 106070 | 2.9375465 | 92.068436 | 9 |
GTTGG | 19785 | 2.8374782 | 47.251873 | 18 |
GTGGT | 19665 | 2.8202682 | 32.550556 | 31 |
CCGGG | 6980 | 2.8099222 | 57.541542 | 14 |
GCTTC | 216415 | 2.7699177 | 86.21493 | 11 |
GCCGG | 6405 | 2.5784457 | 56.59315 | 13 |
GCGTG | 10085 | 2.4232242 | 28.395256 | 11 |
CGTGG | 10000 | 2.4028003 | 31.231821 | 15 |
GGTTG | 15910 | 2.2817426 | 22.23672 | 17 |
AAGCG | 127040 | 2.274243 | 69.06836 | 9 |
CGCCG | 18910 | 2.274165 | 46.063778 | 12 |
GGAGA | 35275 | 2.1138387 | 30.451002 | 31 |
TGGGT | 13460 | 1.9303743 | 31.17994 | 32 |
CTTTT | 1411545 | 1.9227523 | 12.037563 | 15 |
ACGGG | 12155 | 1.8878906 | 35.500786 | 3 |
AGCGG | 11965 | 1.8583802 | 42.145004 | 10 |
GATGG | 19805 | 1.836012 | 30.970554 | 1 |
TTTTA | 3467330 | 1.8222449 | 5.7541757 | 16 |
CGTTT | 234985 | 1.7951404 | 48.274662 | 15 |
TCTTT | 1308850 | 1.782865 | 11.981383 | 14 |
TCGTT | 231585 | 1.7691665 | 48.28011 | 14 |
GCGCC | 14425 | 1.7347873 | 47.23889 | 11 |
ATGGG | 18515 | 1.7164233 | 33.2683 | 2 |
TTCTT | 1232365 | 1.6786802 | 9.390361 | 13 |
CGTCT | 130770 | 1.6737386 | 43.959682 | 12 |
GAGAG | 27625 | 1.6554158 | 15.572217 | 27 |
GACGG | 10655 | 1.6549135 | 33.01064 | 2 |
CTTCT | 711810 | 1.6244782 | 14.284375 | 12 |
TGGTG | 11290 | 1.6191623 | 26.827946 | 14 |
GTGGA | 17395 | 1.6125942 | 13.478577 | 31 |
AAGTG | 148490 | 1.5866181 | 47.886074 | 27 |
GGACG | 10140 | 1.5749246 | 32.663105 | 1 |
GGGCC | 3680 | 1.4814489 | 14.439715 | 11 |
TGGGA | 15900 | 1.474001 | 20.59427 | 20 |
CGGGC | 3650 | 1.469372 | 23.94258 | 15 |
CAGGG | 9200 | 1.4289259 | 32.83786 | 19 |
TTTAG | 479080 | 1.4120474 | 29.868774 | 17 |
GCGCG | 3500 | 1.4089868 | 10.247118 | 9 |
GGCCG | 3230 | 1.3002934 | 14.310665 | 12 |
CTTCG | 98985 | 1.2669191 | 30.416601 | 12 |
GGGCA | 8025 | 1.246427 | 12.580191 | 21 |
AAAGG | 177880 | 1.2285886 | 24.063936 | 24 |
AAAGA | 1467750 | 1.1684388 | 35.06682 | 24 |
GCAGG | 7360 | 1.1431407 | 27.141567 | 18 |
GAGGT | 11750 | 1.0892774 | 16.341848 | 27 |
GAGTT | 65160 | 1.07709 | 31.973417 | 27 |
AGCTT | 215210 | 1.062735 | 33.233784 | 10 |
GTTTA | 345680 | 1.0188624 | 18.52111 | 16 |
TGGAG | 10675 | 0.9896202 | 10.424054 | 17 |
TATGG | 58840 | 0.97262096 | 28.885157 | 19 |
TCGCG | 13465 | 0.96653044 | 9.1239195 | 14 |
TAGTG | 58325 | 0.96410805 | 19.91514 | 19 |
CGCGG | 2275 | 0.9158414 | 5.472603 | 13 |
GTCTT | 113535 | 0.86733747 | 25.143095 | 13 |
TATCG | 175285 | 0.8655801 | 18.55444 | 1 |
GGCGC | 2140 | 0.8614948 | 6.251225 | 10 |
CGACG | 18350 | 0.85143095 | 5.594694 | 12 |
CGCGT | 11680 | 0.8384014 | 8.618629 | 15 |
TTCGT | 101100 | 0.7723416 | 15.7732315 | 13 |
GCCGT | 10725 | 0.7698506 | 17.79414 | 13 |
GGCAG | 4845 | 0.7525158 | 8.981067 | 17 |
GGGCT | 2985 | 0.7172358 | 7.3471127 | 9 |
GAGCA | 39925 | 0.71472883 | 20.769228 | 9 |
GGGAC | 4595 | 0.7136863 | 10.392331 | 21 |
GCGGT | 2950 | 0.7088261 | 10.218906 | 14 |
CGGTG | 2935 | 0.7052219 | 11.716735 | 15 |
TGGAA | 65575 | 0.70066994 | 18.87051 | 21 |
AGCGC | 14770 | 0.6853208 | 18.346992 | 10 |
AGGAA | 97075 | 0.6704814 | 10.251033 | 21 |
ATGGA | 59515 | 0.63591874 | 18.657377 | 20 |
CCGTG | 8605 | 0.61767507 | 14.999953 | 14 |
GTGAA | 57105 | 0.61016786 | 12.947499 | 21 |
TCGTA | 117765 | 0.5815389 | 5.938831 | 14 |
GTAAG | 54305 | 0.5802498 | 11.692607 | 18 |
TTCGG | 13530 | 0.5796766 | 14.389423 | 13 |
GAACG | 32380 | 0.5796599 | 7.866915 | 9 |
CGGAG | 3695 | 0.5739001 | 7.452376 | 4 |
ATCGT | 115670 | 0.57119346 | 5.1749926 | 2 |
TCGGT | 13330 | 0.57110786 | 14.926238 | 14 |
CATCG | 67140 | 0.5554757 | 9.843295 | 12 |
TAAGG | 51910 | 0.5546592 | 15.173367 | 19 |
CGTCA | 66875 | 0.5532833 | 9.743935 | 12 |
GGGAT | 5905 | 0.54741985 | 5.7576756 | 21 |
CGGTT | 12585 | 0.5391893 | 14.432503 | 15 |
AGTGG | 5735 | 0.53166014 | 5.4086323 | 28 |
AGTGA | 48245 | 0.5154986 | 12.902034 | 20 |
ATAGG | 47965 | 0.5125068 | 13.645368 | 18 |
GAGGC | 3255 | 0.5055601 | 5.247785 | 11 |
AAAGC | 244720 | 0.5049406 | 15.088013 | 8 |
GAAAA | 618235 | 0.49216136 | 5.8272395 | 23 |
TGAAG | 45620 | 0.48745042 | 9.771819 | 5 |
TAGGA | 45005 | 0.48087916 | 12.943398 | 19 |
AATCG | 143400 | 0.45773682 | 6.01904 | 1 |
TGGGC | 1900 | 0.45653206 | 6.426928 | 20 |
GTAGT | 27550 | 0.45539957 | 10.630283 | 18 |
AAAAG | 569640 | 0.45347604 | 6.037894 | 7 |
GTCGC | 6095 | 0.43750492 | 9.275914 | 13 |
GACCG | 9020 | 0.41852355 | 5.7952785 | 1 |
GCATC | 50515 | 0.4179305 | 11.597437 | 11 |
AAGGA | 59860 | 0.41344342 | 10.161903 | 20 |
AGTTT | 139765 | 0.41194546 | 11.749363 | 28 |
TAGAG | 38475 | 0.411106 | 10.795578 | 19 |
GGTAA | 38345 | 0.4097169 | 5.3568783 | 21 |
TGGTT | 15995 | 0.40902606 | 6.860291 | 32 |
TAGCG | 14700 | 0.4071079 | 11.1372385 | 9 |
TCTTG | 53050 | 0.40526927 | 11.853837 | 14 |
CTTGT | 52985 | 0.4047727 | 11.730041 | 15 |
GTATG | 24270 | 0.40118134 | 11.440461 | 18 |
CGTAT | 81105 | 0.40050703 | 5.8951893 | 15 |
AGAGA | 57960 | 0.4003204 | 7.2126727 | 20 |
CTCGG | 5475 | 0.3930007 | 5.827728 | 32 |
GTTAG | 21415 | 0.35398847 | 5.544298 | 17 |
TTAGA | 183365 | 0.34935093 | 9.380715 | 31 |
GGTTA | 21045 | 0.34787232 | 5.3970923 | 16 |
GCGAC | 7415 | 0.34405237 | 5.542733 | 11 |
GAGAA | 49620 | 0.34271735 | 7.2338767 | 21 |
AAGCT | 106015 | 0.33840287 | 10.0685005 | 9 |
TAGGT | 20370 | 0.33671463 | 8.024832 | 19 |
ATCTG | 65065 | 0.3212994 | 9.436287 | 2 |
TCTGA | 64065 | 0.3163613 | 9.377927 | 3 |
GATCT | 63880 | 0.31544775 | 6.451212 | 1 |
TCTGG | 7350 | 0.31490192 | 7.5144944 | 14 |
CGTGC | 4175 | 0.29968545 | 7.3447704 | 15 |
GTCTG | 6900 | 0.29562223 | 7.6812124 | 13 |
ACCGG | 6325 | 0.29347688 | 5.8842845 | 2 |
CGTGA | 10575 | 0.29286844 | 7.1109366 | 15 |
CCGGA | 6305 | 0.2925489 | 5.8482165 | 3 |
CTGGT | 6770 | 0.29005253 | 7.322422 | 15 |
AAAGT | 221240 | 0.27246666 | 7.7604146 | 26 |
GGAAT | 25480 | 0.27225417 | 7.0645404 | 5 |
GTCAT | 50615 | 0.24994345 | 5.8347945 | 13 |
GGTAT | 14795 | 0.24456027 | 5.1524367 | 17 |
AGGTA | 20960 | 0.22395794 | 5.3788424 | 20 |
CTGAA | 66795 | 0.21321152 | 6.111513 | 4 |