{
 "metadata": {
  "name": "Welcome"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
     "cell_type": "heading",
     "level": 1,
     "metadata": {},
     "source": [
      "Hi Yanouk!"
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "We have set you up a working directory on eagle. You can ask someone what that is."
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "<img src=\"http://eagle.fish.washington.edu/cnidarian/skitch/genefish_18329D53.png\" alt=\"genefish_18329D53.png\"/>"
     ]
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [],
     "language": "python",
     "metadata": {},
     "outputs": []
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "To start up your Ipython notebook- Navigate to your folder on eagle. You might have to mount first.\n",
      "Select the ipython_folder and right click."
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "<img src=\"http://eagle.fish.washington.edu/cnidarian/skitch/genefish_18329E6A.png\" alt=\"genefish_18329E6A.png\"/>"
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "click Snag Path."
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "In Terminal..."
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "`cd /Volumes/web-2/scaphapoda/Yanouk/ipython_nb`"
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "note thate depending how many mounts it might be `web` versus `web-2`"
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "then type\n",
      "`ipython notebook --pylab inline`"
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "A web browser should open e.g."
     ]
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "<img src=\"http://eagle.fish.washington.edu/cnidarian/skitch/genefish_1832A007.png\" alt=\"genefish_1832A007.png\"/>"
     ]
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "Go!"
     ],
     "language": "python",
     "metadata": {},
     "outputs": []
    }
   ],
   "metadata": {}
  }
 ]
}