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52F_R1_val_1_5x.bedgraph.html
53F_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
53F_R1_val_1_10x.bedgraph.html
53F_R1_val_1_5x.bedgraph.html
546306A01_121101-OysterV9-MG-meth-HX3_2013-08-07T102721_normalized_ratio.gff
546306A01_121101-OysterV9-MG-meth-HX3_2013-08-27T083628_normalized_ratio.gff
546306A02_121101-OysterV9-MG-meth-HX3_2013-08-07T102759_normalized_ratio.gff
546306A02_121101-OysterV9-MG-meth-HX3_2013-08-27T083653_normalized_ratio.gff
546306A03_121101-OysterV9-MG-meth-HX3_2013-08-07T102757_normalized_ratio.gff
546306A03_121101-OysterV9-MG-meth-HX3_2013-08-27T083652_normalized_ratio.gff
546409A01_ClaireOlson_1_2_3_2014-02-13T115537_normalized_ratio.gff
546409A02_ClaireOlson_1_2_3_2014-02-13T115538_normalized_ratio.gff
546409A03_ClaireOlson_1_2_3_2014-02-13T115536_normalized_ratio.gff
54F_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
54F_R1_val_1_10x.bedgraph.html
54F_R1_val_1_5x.bedgraph.html
558216A01_ClaireOlson_4_5_6_2014-02-13T115857_normalized_ratio.gff
558216A02_ClaireOlson_4_5_6_2014-02-13T115856_normalized_ratio.gff
558216A03_ClaireOlson_4_5_6_2014-02-13T115858_normalized_ratio.gff
59M_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
59M_R1_val_1_10x.bedgraph.html
59M_R1_val_1_5x.bedgraph.html
62hr post fert.mov
64M_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
64M_R1_val_1_10x.bedgraph.html
64M_R1_val_1_5x.bedgraph.html
6M-HS_GTGAAA_L001_R1_001.bam
6M-HS_GTGAAA_L001_R1_001.fastq.gz
6M_ATGTCA_L001_R1_001.bam
6M_ATGTCA_L001_R1_001.fastq.gz
6M_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
6M_R1_val_1_10x.bedgraph.html
6M_R1_val_1_5x.bedgraph.html
76F_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
76F_R1_val_1_10x.bedgraph.html
76F_R1_val_1_5x.bedgraph.html
77F_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
77F_R1_val_1_10x.bedgraph.html
77F_R1_val_1_5x.bedgraph.html
7M_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
7M_R1_val_1_10x.bedgraph.html
7M_R1_val_1_5x.bedgraph.html
840 20x-1 celllysis.mov
9M_R1_val_1.CpG_report.merged_CpG_evidence.cov.html
9M_R1_val_1_10x.bedgraph.html
9M_R1_val_1_5x.bedgraph.html
AbAssTrimfasta.reads_binary
AbAssTrimfasta.solid_kmers_binary
Ab_4denovo_Lentrimmed.fastq
Ab_4denovo_trimmed.fa
Ab_4denovo_trimmed.fastq
AltSpliceCLC_030613.zip
Archive.zip
BSMAP_Gonad_QC_oyster_v9.sam
BSMAP_Gonad_QC_oyster_v9_90.sam
BSMAP_MBD_mg_output_v9_A.sam
BSMAP_output_PE_lambda_A.sam
BSMAP_output_gillMBD_v9_90.sam
BSMAP_v9_M.BAM
BSMAPoutput_174gm_Fasta.sam
BSMAPoutput_174gm_v9.sam
BSMAPoutput_174gm_v9_90.sam
BSMAPoutput_174gm_v9_M.sam
BS_CgLarv_T1D3_TGACCA_L004_R1_001.fastq.gz
BS_CgLarv_T1D3_TGACCA_L004_R2_001.fastq.gz
BS_CgLarv_T1D3_TGACCA_L007_R1_001.fastq.gz
BS_CgLarv_T1D3_TGACCA_L007_R2_001.fastq.gz
BS_CgLarv_T1D5_ACAGTG_L004_R1_001.fastq.gz
BS_CgLarv_T1D5_ACAGTG_L004_R2_001.fastq.gz
BS_CgLarv_T1D5_ACAGTG_L007_R1_001.fastq.gz
BS_CgLarv_T1D5_ACAGTG_L007_R2_001.fastq.gz
BS_CgLarv_T3D5_CAGATC_L004_R1_001.fastq.gz
BS_CgLarv_T3D5_CAGATC_L004_R2_001.fastq.gz
BS_CgLarv_T3D5_CAGATC_L007_R1_001.fastq.gz
BS_CgLarv_T3D5_CAGATC_L007_R2_001.fastq.gz
BS_CgM1_ACTTGA_L004_R1_001.fastq.gz
BS_CgM1_ACTTGA_L004_R2_001.fastq.gz
BS_CgM1_ACTTGA_L007_R1_001.fastq.gz
BS_CgM1_ACTTGA_L007_R2_001.fastq.gz
BS_CgM3_GATCAG_L004_R1_001.fastq.gz
BS_CgM3_GATCAG_L004_R2_001.fastq.gz
BS_CgM3_GATCAG_L007_R1_001.fastq.gz
BS_CgM3_GATCAG_L007_R2_001.fastq.gz
BS_PE_Sperm_methratio_CGinfo.tabular
BS_PE_Sperm_methratio_CGinfo_5xcov.tabular
BTV Movie 006.mov
BTV Movie 007.mov
BTV Movie 8.mov
BTV Movie 9.mov
BiGO_BSMAP_Gonad_CLC_genome_v9_v3.sam
BiGO_BSMAP_Gonad_genome_v9_v1.sam
BiGO_BSMAP_Gonad_genome_v9_v2.sam
BiGO_BSMAP_Gonad_genome_v9_v3 copy.sam
BiGO_BSMAP_Gonad_genome_v9_v3.sam
BiGO_BSMAP_Gonad_genome_v9_v6.bsp
BiGO_BSMAP_Gonad_genome_v9_v7.bsp
BiGO_BSMAP_Gonad_lambda.sam
BiGO_BSMAP_Gonad_lambda_v2.sam
BiGO_Betty_plain.sam
BiGO_CAs_oysterv9.csv
BiGO_CCs_oysterv9.csv
BiGO_CGs_oysterv9.csv
BiGO_CTs_oysterv9.csv
BiGO_MethylatedCGs_oyster9.gff
BiGO_MethylatedCGs_oysterv9.csv
BiGO_Methylation10x_oysterv9.gff
BiGO_Methylation5x_oysterv9.gff
BiGO_MethylationCGs_oysterv9_GFF
BiGO_MethylationCoverage_oysterv9_GFF .csv
BiGO_Methylation_oysterv9.gff
BiGO_Methylation_oysterv9.igv
BiGO_Methylation_oysterv9_GFF.csv
BiGO_Methylation_oysterv9_GFF.gff
BiGO_betty_methratio_v1.igv
BiGO_betty_plain_methratio_v1.txt
BiGO_betty_plain_methylkit.csv
BiGO_betty_plain_methylkit_input.csv
BiGO_methratio_v9_A.txt
BiGO_methratio_v9_A2.txt
BiGO_methratio_v9_A4.txt
BiGO_methratio_v9_A5.txt
BiGO_methratio_v9_A9.txt
BiGO_methratio_v9_A_ipy.txt
BiGillRNA_GACTAAGA_1.fastq.gz
BiGillRNA_GACTAAGA_2.fastq.gz
BiGillRNA_genomecov.bedgraph
BiGill_BSMAP_GiIlMBD_genome_v9_v1.sam
BiGill_BSMAP_GillMBD_genomic_gene_v1.sam
BiGill_BSMAP_GillMBD_genomic_gene_v2.bam
BiGill_BSMAP_GillMBD_genomic_gene_v3.BSP
BiGill_BSMAP_GillMBD_genomic_gene_v4.sam
BiGill_BSMAP_GillMBD_genomic_gene_v5.sam
BiGill_BSMAP_TEonly_v1.sam
BiGill_BSMAP_TEonly_v2.sam
BiGill_RNAseqGalaxy_Tophat.bam
BiGill_ThBAM_cov_exon_1.txt
BiGill_methratio_gene_geno_A.txt
BiGill_methratio_gene_geno_C.txt
BiGill_methratio_gene_geno_D.txt
BiGill_methratio_v9_A.txt
BiGill_methratio_v9_B.txt
BiGoRNASeq_noMap
BiGoRNA_CLCtrim_adp.fastq
BiGoRNA_CLCtrim_adp5
BiGoRNA_GTGTCTAC.pe.qc.fq.pe.fastq
BiGoRNA_GTGTCTAC_1.bam
BiGoRNA_GTGTCTAC_1.fastq.gz
BiGoRNA_GTGTCTAC_1.sorted.bam
BiGoRNA_GTGTCTAC_2.fastq.gz
BiGoRNA_bg1.bedgraph
BiGoRNA_bg1_sorted.bedgraph
BiGoRNA_genomecov.bedgraph
BiGo_Over5xCoverage.txt
BiGo_RNAseq_PreProcess.fastq
BiGo_RNAseq_fastx_qual.fastq
BiGo_bsmap_v9_[0403_1441].sam
BiGo_bsmap_v9_[0403_1518].sam
BiGo_egg_redo4.sam
BiGo_lar_F.sam
BiGo_lar_F_methratio_v9_A.txt
BiGo_lar_M1.sam
BiGo_lar_M1_methratio_v9_A.txt
BiGo_lar_M3.sam
BiGo_lar_M3_1side.sam
BiGo_lar_M3_methratio_v9_A.txt
BiGo_lar_T1D3.sam
BiGo_lar_T1D5.sam
BiGo_lar_T3D3.sam
BiGo_lar_T3D3_methratio_v9_A.txt
BiGo_lar_T3D5.sam
BiGo_lar_T3D5_methratio_v9_A.txt
BiGo_lar_TID3_methratio_v9_A.txt
BiGo_lar_TID5_methratio_v9_A.txt
BiGo_lar_fastq.tgz
BiGo_lar_fastq_mcf.tgz
BiGo_methratio_GFF_boop.csv
BiGo_methratio_boop.gff
BiGo_methratio_boop_c.gff
BiGo_methratio_boop_intersect_intron.gff
BiGo_methratio_boop_intersect_other.gff
BiGo_methylation.csv
BiGo_methylation.igv
BiGo_name_score_5x.csv
BiGo_sperm_v9bsmap_out.sam
BiLar_YE_control_t.sam
BiLar_YE_mix_t.sam
BiLar_YE_mix_t_22sm.sam
BlackAB_20100712_CC_CE_v3_trimmed.fastq
Brest_proteins_blastpout
Brest_proteins_blastpout_12prot
Bs_CgLarve_T3D3_GCCAAT_L004_R1_001.fastq.gz
Bs_CgLarve_T3D3_GCCAAT_L004_R2_001.fastq.gz
Bs_CgLarve_T3D3_GCCAAT_L007_R1_001.fastq.gz
Bs_CgLarve_T3D3_GCCAAT_L007_R2_001.fastq.gz
CG-fuzznuc-Pgenerosa-scaff-10k.gff
CG_COMP.txt
CG_TE_names.txt
CG_exon.txt
CG_gene.txt
CG_genes_names.txt
CG_genes_names_formatted.txt
CG_genes_names_formatted_final.txt
CG_intron.txt
CGbigill5x.gff
CGbigill5x_asgff.txt
CGmotif_ensembl_sm.gff
CGmotif_intersect_feature
COG.links.detailed.v9.05.txt
COG.links.detailed.v9.05.txt.gz
COG.links.v9.05.txt
COG.links.v9.05.txt.gz
COG.mappings.v9.05.txt
C_virginica-3.0_CG-motif.bed
CgM1_R1a.fastq
CgM1_R2a.fastq
CgM1_[0316_0954]mk.txt
CgM3_R1a.fastq
CgM3_R2a.fastq
CgT1D3_R1a.fastq
CgT1D3_R2a.fastq
CgT1D5_R1a.fastq
CgT1D5_R2a.fastq
CgT3D3_R1a.fastq
CgT3D3_R2a.fastq
CgT3D5_R1a.fastq
CgT3D5_R2a.fastq
Cgigas_EST_NCBI_040414.tab
Cgigas_EST_NCBI_040414_b.fasta
Cgigas_EST_NCBI_040414_cl.tab
Cgigas_EST_Nuc_NCBI_040414.fasta
Cgigas_EST_Nuc_NCBI_040414.tab
Cgigas_EST_Nuc_NCBI_040414_cl.tab
Cgigas_EST_Nuc_NCBI_040414_clshort.tab
Cgigas_EST_Nuc_NCBI_040414_galaxy.tab
Cgigas_Nuc_NCBI_040414.fasta
Cgigas_gill_HTbisulfiteSeq_CG_AllData.gff
Cgigas_tagseq_trim_nodup_reads.fa
Cgigas_tagseq_trim_nodup_reads.fa.2.7.7.80.10.40.200.dat
Cgigas_tagseq_trim_nodup_reads.fa.2.7.7.80.10.40.200.mask
Cgigas_v9_CG.gff
ClaireOlson.zip
Concholepas_Coquimbo_SFF.zip
Control37bsmapoutput.sam
Control37methratio.txt
Coq_trinity_out.tar.gz
CpGIslandShores.interval
CpGIslands
CpGIslands.gff
CpGMeth_clusters_100_4_BLASTOUTnt.xml
Crassostrea_gigas.GCA_000297895.1.21.dna.genome.fa
Crassostrea_gigas.GCA_000297895.1.21.dna.genome.fa.fa
Crassostrea_gigas.GCA_000297895.1.21.dna.genome.fa.fa.gz
Crassostrea_gigas.GCA_000297895.1.21.dna.toplevel.fa
Crassostrea_gigas.GCA_000297895.1.21.dna_rm.genome.fa
Crassostrea_gigas.GCA_000297895.1.21.dna_rm.toplevel.fa
Crassostrea_gigas.GCA_000297895.1.21.dna_sm.genome.fa
Crassostrea_gigas.GCA_000297895.1.21.dna_sm.toplevel.fa
Crassostrea_gigas.GCA_000297895.1.21.gff3
Crassostrea_gigas.GCA_000297895.1.22.dna_sm.genome.fa
Crassostrea_gigas.GCA_000297895.1.22.dna_sm.genome.fa.gz
Crassostrea_gigas.GCA_000297895.1.22.dna_sm.genome.fa.gz.psq
Crassostrea_gigas.GCA_000297895.1.22.gff3
Crassostrea_gigas.GCA_000297895.1.22.gff3 2
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.1.bt2
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.2.bt2
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.4.bt2
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.fa
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.rev.1.bt2
Crassostrea_gigas.GCA_000297895.1.24.dna_sm.genome.rev.2.bt2
Crassostrea_gigas.GCA_000297895.1.24.gff3
Crassostrea_gigas.GCA_000297895.1.25.gff3
Crassostrea_gigas.GCA_000297895.1.25.sorted.gff3
Cvir_GOSlim_Protnames.txt
DE_onto_SSvsRR0_DIFFERENTS
Datos uniref.accdb
Dermo_full.mp4
Disease Plenary Talks A.mp4
EIMD RCN Welcome.mp4
EM2A genome mapping (1669 references).sam
EM2A mapping (1669 references).sam
EM2A.fastq
EM2Atrim2_align_all.SAM
EM2Atrimmed.fa
EM2B.fastq
EM2C.fastq
EM2D.fastq
EM2E.fastq
EM2F.fastq
EM2G.fastq
EM2H.fastq
EM2_v9_M.sam
EPI-135WG_CG.bed
EPI-135WG_CG.output
ETS_tagseq.zip
EY_mixmethratio_3.txt
Emma_Defense_Talk.mp3
Emma_Defense_Talk.mp4
EndYear1photos.zip
FCC39EM.7z
FCC39EM_02.tar
FCC39KL.tar
FCD29Y2.tar
FCD2CA8.tar
FISH441_Immmune2_Lec.mov
FISH546_SQLShare.mov
F_R1.fastq
F_R2.fastq
G3.bedgraph
G3_1.fq
G3_2.fq
GB71BC402.sff
GB71BC403.sff
Galaxy1-[associations_uni_swisspro_012410.txt].tabular
Galaxy14-[combined_CA].tabular
Galaxy15-[combined_CT].tabular
Galaxy16-[combined_CC].tabular
Galaxy17-[CG_dinucleotide_bed].tabular
Galaxy37-[Clip_on_data_11].fastq
Galaxy53-[Converted_Interval].interval
Galaxy6.tabular
Galaxy61-[all_CG_dinucleotides].tabular
Galaxy92-[Join_two_Datasets_on_data_29_and_data_91].tabular
Galaxy_C content.txt
Galaxy_C content_Oly.txt
Galaxy_G content.txt
Galaxy_G content_Oly.txt
Gene_v9_CGs.txt
Geneious Backup 2013-05-10.backup.zip
Geo_Pool_F_GGCTAC_L006_R1_001_val_1.fq
Geo_Pool_F_GGCTAC_L006_R2_001_val_2.fq
Geo_Pool_M_CTTGTA_L006_R1_001_val_1.fq
Geo_Pool_M_CTTGTA_L006_R2_001_val_2.fq
Gil_1 (paired) RNA-Seq (Reads).bam
Gil_1 (paired) RNA-Seq (Reads).sam
Gil_1.fq.gz
Gil_2.fq.gz
GraphFromIwormFasta.out
Gxy25_ICHFastq1_11186.bam
Gxy25_ICHFastq1_11186.sam
Gxy25_ICHFastq1_PE86_Qf.fastq.gz
Gxy25_ICHFastq1_PE86_Qfiltered (paired).fastq
Gxy25_ICHFastq1_PE86_Qfiltered.fastq.zip
Gxy26_ICHFastq2_PE86_Qf.fastq.gz
Gxy26_ICHFastq2_PE86_Qfiltered.fastq.zip
Hem_1.fq.gz
IA071_ACAGTG_L007_R1_001.fastq.gz
IA071_ACAGTG_L007_R1_002.fastq.gz
IA071_ACAGTG_L007_R2_001.fastq.gz
IA071_ACAGTG_L007_R2_002.fastq.gz
IA071_R1_P.fq.gz
IA071_R2_P.fq.gz
IA071t_R1_P.fq.gz
IA071t_R2_P.fq.gz
IA235_ATCACG_L007_R1_001.fastq.gz
IA235_ATCACG_L007_R1_002.fastq.gz
IA235_ATCACG_L007_R2_001.fastq.gz
IA235_ATCACG_L007_R2_002.fastq.gz
IA235_R1_P.fq.gz
IA235_R2_P.fq.gz
IA235t_R1_P.fq.gz
IA235t_R2_P.fq.gz
IA281_GCCAAT_L007_R1_001.fastq.gz
IA281_GCCAAT_L007_R1_002.fastq.gz
IA281_GCCAAT_L007_R2_001.fastq.gz
IA281_GCCAAT_L007_R2_002.fastq.gz
IA281_R1_P.fq.gz
IA281_R2_P.fq.gz
IA281t_R1_P.fq.gz
IA281t_R2_P.fq.gz
IA294_CAGATC_L007_R1_001.fastq.gz
IA294_CAGATC_L007_R1_002.fastq.gz
IA294_CAGATC_L007_R2_001.fastq.gz
IA294_CAGATC_L007_R2_002.fastq.gz
IA294_R1_P.fq.gz
IA294_R2_P.fq.gz
IA294t_R1_P.fq.gz
IA294t_R2_P.fq.gz
IA300_R1_P.fq.gz
IA300_R2_P.fq.gz
IA300_TGACCA_L007_R1_001.fastq.gz
IA300_TGACCA_L007_R1_002.fastq.gz
IA300_TGACCA_L007_R2_001.fastq.gz
IA300_TGACCA_L007_R2_002.fastq.gz
IA300t_R1_P.fq.gz
IA300t_R2_P.fq.gz
IA304_CGATGT_L007_R1_001.fastq.gz
IA304_CGATGT_L007_R1_002.fastq.gz
IA304_CGATGT_L007_R2_001.fastq.gz
IA304_CGATGT_L007_R2_002.fastq.gz
IA304_R1_P.fq.gz
IA304_R2_P.fq.gz
IA304t_R1_P.fq.gz
IA304t_R2_P.fq.gz
IA316_ACTTGA_L007_R1_001.fastq.gz
IA316_ACTTGA_L007_R2_001.fastq.gz
IA316_R1_P.fq.gz
IA316_R2_P.fq.gz
IA316t_R1_P.fq.gz
IA316t_R2_P.fq.gz
IA377_R1_P.fq.gz
IA377_R2_P.fq.gz
IA377_TTAGGC_L007_R1_001.fastq.gz
IA377_TTAGGC_L007_R2_001.fastq.gz
IA377t_R1_P.fq.gz
IA377t_R2_P.fq.gz
ICH_SNPS.vcf
IEP_Recap_Osmoregulation.mov
IEP_Xenobiotics.mov
Introns.fa
Introns_allCGs_MethandUnmeth_OysterGenomenoNAs.csv
Introns_allCGs_MethandUnmeth_allCGs_OysterGenome.txt
Introns_nucleotides
Introns_v9_CGs.txt
JB_mRNAtaxid6580.txt
Jensen_FISH495.mov
Killer Squid.m4v
LabNotebook080113.enex
LabNotebook080113.enex.zip
M1_R1.fastq
M1_R1_Nov_fastq_quality.fastq
M1_R1_Sept_fastq_quality.fastq
M1_R2.fastq
M1_R2_Nov_fastq_quality.fastq
M1_R2_Sept_fastq_quality.fastq
M1_methratio_CG.txt
M3_R1.fastq
M3_R1_Nov_fastq_quality.fastq
M3_R1_Sept_fastq_quality.fastq
M3_R2.fastq
M3_R2_Nov_fastq_quality.fastq
M3_R2_Sept_fastq_quality.fastq
M3_methratio_CG.txt
Man1_RNAseq_v9.bam
Man1_v9_RNAseq.sam
Man1_v9_RNAseq.sorted.sam
Maur_transcriptome_v1.fasta
MethScoreperGene.csv
MethScoreperGene.txt
MethScoreperGene_Modified.txt
MethScoreperGene_Modified2.txt
MethandUnmethCGs_Introns.txt
MethandUnmeth_Over5xCoverage.csv
MethandUnmeth_Over5xCoverage.txt
MethandUnmeth_allCGs_OysterGenome.txt
Methylated_CGs_oysterv9.csv
MgoTophat_cover_CDS_d_split_A
MgoTophat_cover_CDS_d_split_D
Mgo_1 (paired) RNA-Seq.sam
Mix54bsmapoutput.sam
Mix54methratio_final.txt
Mixbsmapoutput.sam
NSF_RCN_BIO533.mov
NoMethCG_BED.bed
No_meth_CG_BED.txt
NonMethylatedAreas_CGI_GO
Non_Normalized_Bert.tar.gz
Non_Normalized_Ernie.tar.gz
Nonmethylated_GOComponent.txt
Nonmethylated_GOFunction.txt
Nonmethylated_GOProcess.txt
Normalized_Bert.tar.gz
Normalized_Ernie.tar.gz
Nuevo analisis de RRvsSS.accdb
OA RNAseq OA454GonadRUPHI Raw Galaxy File.tabular
OA ref to OA 454 Gonad de novo annotated.txt
OA400_greenbird_bsmap_22.sam
OID40453_probes.txt
OUT_methratio_gillMBD_v9_90_B.txt
OUTzu_methratioBSMAP_gondadQC_v9_90_A.txt
OUTzu_methratioBSMAP_gondadQC_v9_B.txt
OUTzu_methratioBSMAP_v9_M_ce.txt
Ol_larv_400_1.bam
Olurida_trans_v2_trlib.fastq
Olurida_transcriptome_v3.dos
Olurida_transcriptome_v3.fa.txt
Olurida_transcriptome_v3.fasta
Olurida_transcriptome_v3_fixed.fasta
Olurida_trim_nodups_v2reads
Olurida_trim_nodups_v2reads.fa
OlyOv3.contig
OlyOv3.edge
OlyOv3.preArc
OlyOv3.updated.edge
OlyOv6_combined_R1_val_1.fq
OlyOv6_combined_R2_val_2.fq
Oly_oyster_Archive.zip
Os.1.ht2
Os.2.ht2
Os.4.ht2
Os.5.ht2
Os.6.ht2
Os1.bam
Os1.gtf
Os1.sam
Os10.bam
Os10.gtf
Os10_1_paired.fq.gz
Os10_2_paired.fq.gz
Os11.bam
Os11.gtf
Os11_1_paired.fq.gz
Os11_2_paired.fq.gz
Os12.bam
Os12.gtf
Os12_1_paired.fq.gz
Os12_2_paired.fq.gz
Os13.bam
Os13.gtf
Os13_1_paired.fq.gz
Os13_2_paired.fq.gz
Os14.bam
Os14.gtf
Os14_1_paired.fq.gz
Os14_2_paired.fq.gz
Os15.bam
Os15.gtf
Os15_1_paired.fq.gz
Os15_2_paired.fq.gz
Os16.bam
Os16.gtf
Os16_1_paired.fq.gz
Os16_2_paired.fq.gz
Os17.bam
Os17.gtf
Os17_1_paired.fq.gz
Os17_2_paired.fq.gz
Os18.bam
Os18.gtf
Os18_1_paired.fq.gz
Os18_2_paired.fq.gz
Os19.bam
Os19.gtf
Os19_1_paired.fq.gz
Os19_2_paired.fq.gz
Os1_1_paired.fq.gz
Os1_2_paired.fq.gz
Os2.bam
Os2.gtf
Os20.bam
Os20.gtf
Os20_1_paired.fq.gz
Os20_2_paired.fq.gz
Os21.bam
Os21.gtf
Os21_1_paired.fq.gz
Os21_2_paired.fq.gz
Os22_1_paired.fq.gz
Os22_2_paired.fq.gz
Os23_1_paired.fq.gz
Os23_2_paired.fq.gz
Os24_1_paired.fq.gz
Os24_2_paired.fq.gz
Os25_1_paired.fq.gz
Os25_2_paired.fq.gz
Os26_1_paired.fq.gz
Os26_2_paired.fq.gz
Os27_1_paired.fq.gz
Os27_2_paired.fq.gz
Os28.bam
Os28.gtf
Os28_1_paired.fq.gz
Os28_2_paired.fq.gz
Os29.bam
Os29.gtf
Os29_1_paired.fq.gz
Os29_2_paired.fq.gz
Os2_1_paired.fq.gz
Os2_2_paired.fq.gz
Os3.bam
Os3.gtf
Os30.bam
Os30.gtf
Os30_1_paired.fq.gz
Os30_2_paired.fq.gz
Os31.bam
Os31.gtf
Os31_1_paired.fq.gz
Os31_2_paired.fq.gz
Os32.bam
Os32.gtf
Os32_1_paired.fq.gz
Os32_2_paired.fq.gz
Os33.bam
Os33.gtf
Os33_1_paired.fq.gz
Os33_2_paired.fq.gz
Os34.bam
Os34.gtf
Os34_1_paired.fq.gz
Os34_2_paired.fq.gz
Os35.bam
Os35.gtf
Os35_1_paired.fq.gz
Os35_2_paired.fq.gz
Os36.bam
Os36.gtf
Os36_1_paired.fq.gz
Os36_2_paired.fq.gz
Os3_1_paired.fq.gz
Os3_2_paired.fq.gz
Os4_1_paired.fq.gz
Os4_2_paired.fq.gz
Os5_1_paired.fq.gz
Os5_2_paired.fq.gz
Os6_1_paired.fq.gz
Os6_2_paired.fq.gz
Os7_1_paired.fq.gz
Os7_2_paired.fq.gz
Os8_1_paired.fq.gz
Os8_2_paired.fq.gz
Os9_1_paired.fq.gz
Os9_2_paired.fq.gz
Other.fa
Other_nucleotides
Other_v9_CGs.txt
Output.zip
Oyster_90_GenomeCoverage.bed
Oysterv9_allCGs.gff
PROFILE.db.html
Panopea_generosa-Scaff-10k.fa
PiuraChilensis_Coquimbo.fastq
PiuraChilensis_Coquimbo_SFF.zip
PiuraChilensis_Coquimbo_trimmer_out.fastq
PiuraChilensis_Valdivia.fastq
PiuraChilensis_Valdivia_SFF.zip
PiuraChilensis_Valdivia_trimmer_out.fastq
Psemu1_all_proteins_20111011.aa.fasta
QPX_10__bamtobed_A.bed
QPX_10__bamtobed_B_split.bed
QPX_RT_bamtobed_A.bed
QPX_RT_bamtobed_B_split.bed
RBT_Orthomyxovirus_GTAGAG_L007_R1_001.fastq.gz
Roadmaps
Roberts_20100712_CC_F3.csfasta
Roberts_20100712_CC_F3_QV.qual
Roberts_20100712_CE_F3.csfasta
Roberts_20100712_CE_F3_QV.qual
Roberts_20100712_Lean_F3.csfasta
Roberts_20100712_Lean_F3_QV.qual
Roberts_20100712_Sisco_F3.csfasta
Roberts_20100712_Sisco_F3_QV.qual
SB_UNmeth_mapping.bam
SB_meth.fastq
SB_meth_mapping.bam
SB_meth_sort.bam
SB_unmeth.fastq
SE_sm_filtered_LTL_PS63_AGTTCC_L005_R1.fastq
SE_sm_filtered_LTL_PS63_AGTTCC_L005_R1.fastq.gz
SPID_GOnumber.txt
SPID_and_Description.txt
SPID_and_GO_number.tabular.zip
SPID_and_GO_number.txt
SRR1693528.sra
SRR217433.sra
SRR217434.sra
SRR5085013.fastq.tar.gz
SRR5085015.fastq
SRR5085015.fastq.tar.gz
SWISS PROT ID_GOterm_ONLYassociationfile.tabular
SacceM3839_1_all_transcripts_20120714.nt.fasta
Screen Recording.mov
Sequences
Shys_transcriptome_v1.fasta
Sigenae_data_1.tsv.gz
Sigenae_data_1.txt
SoapOutput.contig
SoapOutput.edge
SoapOutput.preArc
SoapOutput.readInGap
Stack105700.Naso unicornis.zip
Steven R.mov
Storer_Defense.mov
Summer2014OysterPhotos.zip
T1.bam
T1D3_R1.fastq
T1D3_R1_Nov_fastq_quality.fastq
T1D3_R1_Sept_fastq_quality.fastq
T1D3_R2.fastq
T1D3_R2_Nov_fastq_quality.fastq
T1D3_R2_Sept_fastq_quality.fastq
T1D3_methratio_CG.txt
T1D5_R1.fastq
T1D5_R1_Nov_fastq_quality.fastq
T1D5_R1_Sept_fastq_quality.fastq
T1D5_R2.fastq
T1D5_R2_Nov_fastq_quality.fastq
T1D5_R2_Sept_fastq_quality.fastq
T2.bam
T3D3_R1.fastq
T3D3_R1_Nov_fastq_quality.fastq
T3D3_R1_Sept_fastq_quality.fastq
T3D3_R2.fastq
T3D3_R2_Nov_fastq_quality.fastq
T3D3_R2_Sept_fastq_quality.fastq
T3D5_R1.fastq
T3D5_R1_Nov_fastq_quality.fastq
T3D5_R1_Sept_fastq_quality.fastq
T3D5_R2.fastq
T3D5_R2_Nov_fastq_quality.fastq
T3D5_R2_Sept_fastq_quality.fastq
TGR_CGmotif_intersect_exon.txt
TGR_intersectbed_CG_other.gff
TGR_intersectbed_intron_v9_CG.gff
TJGR_GonadPE_BS_v9_10x_format.tabular
TJGR_GonadPE_BS_v9_90_CG_10x.txt
TJGR_GonadPE_BS_v9_90_CG_5x_NOmeth.bed
TJGR_MgoTophat_GenomeCov.bedgraph
TJGR_MgoTophat_coverage_CDS_depth.txt
TJGR_NonCDS_50window.bed
TJGR_Tophat_Gil_v9_90_acchit.bam
TJGR_genomic_gene.fa
TJGR_genomic_gene.fasta
TJGR_genomic_gene.txt
TJGR_genomic_gene_FS.fa
TJGR_oyster_v9_CG.gff
TJGR_oyster_v9_CG_sorted.gff
TJGR_oyster_v9_CGmotif.gff
TJGR_v9_cpgreport_1.gff
TJGR_v9_cpgreport_1.output
TORN_Pool_4_S4_L006_R1_001.fastq
TORN_Pool_4_S4_L006_R1_001.zip
TORN_Pool_4_S4_L008_R1_001.fastq
TORN_Pool_5_S5_L006_R1_001.fastq
TORN_Pool_5_S5_L008_R1_001.fastq
TORN_Pool_6_S6_L006_R1_001.fastq
TORN_Pool_6_S6_L008_R1_001.fastq
Tartar_PracticalBiology.pdf
Testbsmapoutput.sam
Testmethratio.txt
Timelapse Movie 1
Timelapse Movie 2
Trinity-GG.fasta
Trinity.Cufffly.fasta
Trinity.fasta
U1.bam
U2.bam
UnmappedBLASTn_blastnPhageGBnt.fasta
UnmethylatedCGs_50percent.txt
UnmethylatedCGs_Other.txt
UnmethylatedCGs_oysterv9.csv
UnmethylatedCGs_oysterv9.txt
UnmethylatedRegions_5xcoverage_mRNA.txt
UnmethylatedRegions_5xcoverage_mRNA_redo.txt
Unmethylated_CAs_oysterv9.csv
Unmethylated_CCs_oysterv9.csv
Unmethylated_CGs_Oysterv9_50percent.csv
Unmethylated_CGs_Oysterv9_50percent_GFF.txt
Unmethylated_CGs_oysterv9.csv
Unmethylated_CTs_oysterv9.csv
Unmethylated_Over5xcoverage.txt
Urban Waters data analysis.zip
VARIS5_A-002.bam
VARIS5_A-003.bam
VARIS5_A-004.bam
VARIS5_A-005.bam
VARIS5_A-006.bam
VARIS5_A-007.bam
VARIS5_A-008.bam
VARIS5_A-009.bam
VARIS5_A-010.bam
VARIS5_A-011.bam
VARIS5_A-012.bam
VARIS5_A-013.bam
VARIS5_A-014.bam
VARIS5_A-015.bam
VARIS5_A-016.bam
VARIS5_A-017.bam
VARIS5_A-018.bam
VARIS5_A-019.bam
VARIS5_A-020.bam
VARIS5_A-021.bam
VARIS5_A-022.bam
VARIS5_A-023.bam
VARIS5_A-024.bam
VARIS5_A-025.bam
VARIS5_A-026.bam
VARIS5_A-027.bam
VARIS5_A-028.bam
VARIS5_A-047.bam
VARIS5_A-050.bam
VARIS5_A-052.bam
VARIS5_A-055.bam
VARIS5_A-056.bam
VARIS5_A-060.bam
VARIS5_A-069.bam
VARIS5_A-074.bam
VARIS5_A-078.bam
VARIS5_A-080.bam
VARIS5_A-082.bam
VARIS5_A-085.bam
VARIS5_A-090.bam
VARIS5_A-093.bam
VARIS5_A-095.bam
VARIS5_A-096.bam
VARIS5_A-100.bam
VARIS5_A-103.bam
VARIS5_A-105.bam
VARIS5_A-107.bam
VARIS5_A-108.bam
VARIS5_A-110.bam
VARIS5_A-112.bam
VARIS5_A-119.bam
VARIS5_A-120.bam
VARIS5_A-131.bam
VARIS5_A-136.bam
VARIS5_A-139.bam
VARIS5_A-140.bam
VARIS5_A-151.bam
VARIS5_A-153.bam
VARIS5_A-157.bam
VARIS5_A-161.bam
VARIS5_A-169.bam
VARIS5_A-170.bam
VARIS5_A-173.bam
VARIS5_A-176.bam
VARIS5_A-177.bam
VARIS5_A-178.bam
VARIS5_A-181.bam
VARIS5_A-183.bam
VARIS5_A-184.bam
VARIS5_A-202.bam
VARIS5_A-203.bam
VARIS5_A-210.bam
VARIS5_A-213.bam
VARIS5_A-216.bam
VARIS5_A-217.bam
VARIS5_A-221.bam
VARIS5_A-222.bam
VARIS5_A-223.bam
VARIS5_A-224.bam
VARIS5_A-226.bam
VARIS5_A-231.bam
VARIS5_A-234.bam
VARIS5_A-235.bam
VARIS5_A-236.bam
VARIS5_A-237.bam
VARIS5_A-238.bam
VARIS5_A-239.bam
VARIS5_A-242.bam
VARIS5_A-243.bam
VARIS5_A-244.bam
VARIS5_A-245.bam
VARIS5_A-246.bam
VARIS5_A-247.bam
VARIS5_A-250.bam
VARIS5_A-251.bam
VARIS5_A-252.bam
VARIS5_A-253.bam
VARIS5_A-254.bam
VARIS5_A-255.bam
VARIS5_A-258.bam
VARIS5_A-259.bam
VARIS5_A-260.bam
VARIS5_A-261.bam
VARIS5_A-262.bam
VARIS5_A-263.bam
VARIS5_A-264.bam
VARIS5_A-265.bam
VARIS5_A-266.bam
VARIS5_A-267.bam
VARIS5_A-268.bam
VARIS5_A-269.bam
VARIS5_A-270.bam
VARIS5_A-271.bam
VARIS5_A-272.bam
VARIS5_A-273.bam
VARIS5_A-274.bam
VARIS5_A-275.bam
VARIS5_A-276.bam
VARIS5_A-277.bam
VARIS5_A-278.bam
VARIS5_A-279.bam
VARIS5_A-280.bam
VARIS5_A-281.bam
VARIS5_A-282.bam
VARIS5_A-283.bam
VARIS5_A-284.bam
VARIS5_A-285.bam
VARIS5_A-286.bam
VARIS5_A-287.bam
VARIS5_A-288.bam
VARIS5_A-289.bam
VARIS5_A-290.bam
VARIS5_A-291.bam
VARIS5_A-292.bam
VARIS5_A-293.bam
VARIS5_A-294.bam
VARIS5_A-295.bam
VARIS5_A-296.bam
VARIS5_A-297.bam
VARIS5_A-298.bam
VARIS5_A-299.bam
VARIS5_A-300.bam
VARIS5_A-301.bam
VARIS5_A-302.bam
VARIS5_A-303.bam
VARIS5_A-304.bam
VARIS5_A-305.bam
VARIS5_A-306.bam
VARIS5_A-307.bam
VARIS5_A-308.bam
VARIS5_A-309.bam
VARIS5_A-310.bam
VARIS5_A-311.bam
VARIS5_A-312.bam
VARIS5_A-313.bam
VARIS5_A-314.bam
VARIS5_A-315.bam
VARIS5_A-316.bam
VARIS5_A-317.bam
VARIS5_A-318.bam
VARIS5_A-319.bam
VARIS5_A-320.bam
VARIS5_A-321.bam
VARIS5_A-322.bam
VARIS5_A-323.bam
VARIS5_A-324.bam
VARIS5_A-325.bam
VARIS5_A-326.bam
VARIS5_A-327.bam
VARIS5_A-328.bam
VARIS5_A-329.bam
VARIS5_A-330.bam
VARIS5_A-331.bam
VARIS5_A-332.bam
VARIS5_B-001.bam
VARIS5_B-002.bam
VARIS5_B-003.bam
VARIS5_B-004.bam
VARIS5_B-005.bam
VARIS5_B-006.bam
VARIS5_B-007.bam
VARIS5_B-008.bam
VARIS5_B-009.bam
VARIS5_B-010.bam
VARIS5_B-011.bam
VARIS5_B-012.bam
VARIS5_B-013.bam
VARIS5_B-014.bam
VARIS5_B-015.bam
VARIS5_B-016.bam
VARIS5_B-017.bam
VARIS5_B-018.bam
VARIS5_B-019.bam
VARIS5_B-020.bam
VARIS5_B-021.bam
VARIS5_B-022.bam
VARIS5_B-023.bam
VARIS5_B-024.bam
VARIS5_B-025.bam
VARIS5_B-026.bam
VARIS5_B-027.bam
VARIS5_B-035.bam
VARIS5_B-037.bam
VARIS5_B-039.bam
VARIS5_B-042.bam
VARIS5_B-043.bam
VARIS5_B-046.bam
VARIS5_B-047.bam
VARIS5_B-052.bam
VARIS5_B-053.bam
VARIS5_B-054.bam
VARIS5_B-058.bam
VARIS5_B-061.bam
VARIS5_B-066.bam
VARIS5_B-070.bam
VARIS5_B-073.bam
VARIS5_B-076.bam
VARIS5_B-079.bam
VARIS5_B-084.bam
VARIS5_B-088.bam
VARIS5_B-089.bam
VARIS5_B-091.bam
VARIS5_B-093.bam
VARIS5_B-096.bam
VARIS5_B-103.bam
VARIS5_B-107.bam
VARIS5_B-110.bam
VARIS5_B-115.bam
VARIS5_B-116.bam
VARIS5_B-117.bam
VARIS5_B-118.bam
VARIS5_B-119.bam
VARIS5_B-120.bam
VARIS5_B-127.bam
VARIS5_B-132.bam
VARIS5_B-133.bam
VARIS5_B-139.bam
VARIS5_B-145.bam
VARIS5_B-150.bam
VARIS5_B-151.bam
VARIS5_B-154.bam
VARIS5_B-157.bam
VARIS5_B-168.bam
VARIS5_B-180.bam
VARIS5_B-190.bam
VARIS5_B-195.bam
VARIS5_B-198.bam
VARIS5_B-199.bam
VARIS5_B-208.bam
VARIS5_B-222.bam
VARIS5_B-224.bam
VARIS5_B-225.bam
VARIS5_B-227.bam
VARIS5_B-228.bam
VARIS5_B-232.bam
VARIS5_B-240.bam
VARIS5_B-241.bam
VARIS5_B-242.bam
VARIS5_B-244.bam
VARIS5_B-254.bam
VARIS5_B-257.bam
VARIS5_B-269.bam
VARIS5_B-270.bam
VARIS5_B-271.bam
VARIS5_B-272.bam
VARIS5_B-273.bam
VARIS5_B-274.bam
VARIS5_B-277.bam
VARIS5_B-278.bam
VARIS5_B-279.bam
VARIS5_B-280.bam
VARIS5_B-281.bam
VARIS5_B-282.bam
VARIS5_B-285.bam
VARIS5_B-286.bam
VARIS5_B-287.bam
VARIS5_B-288.bam
VARIS5_B-289.bam
VARIS5_B-290.bam
VARIS5_B-291.bam
VARIS5_B-292.bam
VARIS5_B-293.bam
VARIS5_B-294.bam
VARIS5_B-295.bam
VARIS5_B-296.bam
VARIS5_B-297.bam
VARIS5_B-298.bam
VARIS5_B-299.bam
VARIS5_B-300.bam
VARIS5_B-301.bam
VARIS5_B-302.bam
VARIS5_B-303.bam
VARIS5_B-304.bam
VARIS5_B-305.bam
VARIS5_B-306.bam
VARIS5_B-307.bam
VARIS5_B-308.bam
VARIS5_B-309.bam
VARIS5_B-310.bam
VARIS5_B-311.bam
VARIS5_B-312.bam
VARIS5_B-313.bam
VARIS5_B-314.bam
VARIS5_B-315.bam
VARIS5_B-316.bam
VARIS5_B-317.bam
VARIS5_B-318.bam
VARIS5_B-319.bam
VARIS5_B-320.bam
VARIS5_B-321.bam
VARIS5_B-322.bam
VARIS5_B-323.bam
VARIS5_B-324.bam
VARIS5_B-325.bam
VARIS5_B-326.bam
VARIS5_B-327.bam
VARIS5_B-328.bam
VARIS5_B-329.bam
VARIS5_B-330.bam
VARIS5_B-331.bam
VARIS5_B-332.bam
VARIS5_B-333.bam
VARIS5_B-334.bam
VARIS5_B-335.bam
VARIS5_B-336.bam
VARIS5_B-337.bam
VARIS5_B-338.bam
VARIS5_B-339.bam
VARIS5_B-340.bam
VARIS5_B-341.bam
VARIS5_B-342.bam
VARIS5_B-343.bam
VARIS5_B-344.bam
VARIS5_B-345.bam
VARIS5_B-346.bam
VARIS5_B-347.bam
VARIS5_B-348.bam
VARIS5_B-349.bam
VARIS5_B-350.bam
VARIS5_B-351.bam
VARIS5_B-352.bam
VARIS5_B-353.bam
VARIS5_B-354.bam
VARIS5_B-355.bam
VARIS5_B-356.bam
VARIS5_B-357.bam
VARIS5_B-358.bam
VARIS5_B-359.bam
VARIS5_C-002.bam
VARIS5_C-003.bam
VARIS5_C-004.bam
VARIS5_C-005.bam
VARIS5_C-006.bam
VARIS5_C-007.bam
VARIS5_C-008.bam
VARIS5_C-009.bam
VARIS5_C-010.bam
VARIS5_C-011.bam
VARIS5_C-012.bam
VARIS5_C-013.bam
VARIS5_C-014.bam
VARIS5_C-015.bam
VARIS5_C-016.bam
VARIS5_C-017.bam
VARIS5_C-018.bam
VARIS5_C-019.bam
VARIS5_C-020.bam
VARIS5_C-021.bam
VARIS5_C-022.bam
VARIS5_C-023.bam
VARIS5_C-024.bam
VARIS5_C-025.bam
VARIS5_C-026.bam
VARIS5_C-027.bam
VARIS5_C-028.bam
VARIS5_C-029.bam
VARIS5_C-051.bam
VARIS5_C-052.bam
VARIS5_C-054.bam
VARIS5_C-055.bam
VARIS5_C-064.bam
VARIS5_C-067.bam
VARIS5_C-074.bam
VARIS5_C-075.bam
VARIS5_C-076.bam
VARIS5_C-080.bam
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VARIS5_C-090.bam
VARIS5_C-094.bam
VARIS5_C-105.bam
VARIS5_C-118.bam
VARIS5_C-120.bam
VARIS5_C-124.bam
VARIS5_C-126.bam
VARIS5_C-128.bam
VARIS5_C-129.bam
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VARIS5_C-139.bam
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VARIS5_C-145.bam
VARIS5_C-146.bam
VARIS5_C-148.bam
VARIS5_C-150.bam
VARIS5_C-159.bam
VARIS5_C-161.bam
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VARIS5_C-176.bam
VARIS5_C-180.bam
VARIS5_C-183.bam
VARIS5_C-186.bam
VARIS5_C-191.bam
VARIS5_C-193.bam
VARIS5_C-200.bam
VARIS5_C-203.bam
VARIS5_C-212.bam
VARIS5_C-230.bam
VARIS5_C-236.bam
VARIS5_C-249.bam
VARIS5_C-250.bam
VARIS5_C-257.bam
VARIS5_C-258.bam
VARIS5_C-263.bam
VARIS5_C-264.bam
VARIS5_C-265.bam
VARIS5_C-266.bam
VARIS5_C-267.bam
VARIS5_C-268.bam
VARIS5_C-269.bam
VARIS5_C-272.bam
VARIS5_C-273.bam
VARIS5_C-274.bam
VARIS5_C-275.bam
VARIS5_C-276.bam
VARIS5_C-277.bam
VARIS5_C-280.bam
VARIS5_C-281.bam
VARIS5_C-282.bam
VARIS5_C-283.bam
VARIS5_C-284.bam
VARIS5_C-285.bam
VARIS5_C-288.bam
VARIS5_C-289.bam
VARIS5_C-290.bam
VARIS5_C-291.bam
VARIS5_C-292.bam
VARIS5_C-293.bam
VARIS5_C-296.bam
VARIS5_C-297.bam
VARIS5_C-298.bam
VARIS5_C-299.bam
VARIS5_C-300.bam
VARIS5_C-301.bam
VARIS5_C-302.bam
VARIS5_C-303.bam
VARIS5_C-304.bam
VARIS5_C-305.bam
VARIS5_C-306.bam
VARIS5_C-307.bam
VARIS5_C-308.bam
VARIS5_C-309.bam
VARIS5_C-310.bam
VARIS5_C-311.bam
VARIS5_C-312.bam
VARIS5_C-313.bam
VARIS5_C-314.bam
VARIS5_C-315.bam
VARIS5_C-316.bam
VARIS5_C-317.bam
VARIS5_C-318.bam
VARIS5_C-319.bam
VARIS5_C-320.bam
VARIS5_C-321.bam
VARIS5_C-322.bam
VARIS5_C-323.bam
VARIS5_C-324.bam
VARIS5_C-325.bam
VARIS5_C-326.bam
VARIS5_C-327.bam
VARIS5_C-328.bam
VARIS5_C-329.bam
VARIS5_C-330.bam
VARIS5_C-331.bam
VARIS5_C-332.bam
VARIS5_C-333.bam
VARIS5_C-334.bam
VARIS5_C-335.bam
VARIS5_C-336.bam
VARIS5_C-337.bam
VARIS5_C-338.bam
VARIS5_C-339.bam
VARIS5_C-340.bam
VARIS5_C-341.bam
VARIS5_C-342.bam
VARIS5_C-343.bam
VARIS5_C-344.bam
VARIS5_C-345.bam
VARIS5_C-346.bam
VARIS5_C-347.bam
VARIS5_C-348.bam
VARIS5_C-349.bam
VARIS5_C-350.bam
VARIS5_C-351.bam
VARIS5_C-352.bam
VARIS5_C-353.bam
VARIS5_C-354.bam
VARIS5_C-355.bam
VARIS5_C-356.bam
VARIS5_C-357.bam
VARIS5_C-358.bam
VARIS5_C-359.bam
VARIS5_C-360.bam
VARIS5_C-361.bam
VARIS5_C-362.bam
VARIS5_C-363.bam
VARIS5_C-364.bam
VARIS5_C-365.bam
VARIS5_C-366.bam
VARIS5_C-367.bam
VARIS5_C-368.bam
VARIS5_C-369.bam
VARIS5_C-370.bam
VTS_01_1.VOB
Vt_sol_09.fa
WholeGenomeNucs
Y38_control_GTGAAA_L005_R1_001.fastq.gz
Y38_control_GTGAAA_L005_R2_001.fastq.gz
Y54_Mix_GTGGCC_L005_R1_001.fastq.gz
Y54_Mix_GTGGCC_L005_R2_001.fastq.gz
Y54_Mix_GTGGCC_L007_R1_001.fastq.gz
Y54_Mix_GTGGCC_L007_R1_002.fastq.gz
Y54_Mix_GTGGCC_L007_R2_001.fastq.gz
Y54_Mix_GTGGCC_L007_R2_002.fastq.gz
YE_control_22sm_methratio_CG.txt
YE_control_22sm_methratio_out.txt
YE_control_22sm_methratio_outCG.txt
YE_mix_22sm_methkit.txt
YE_mix_22sm_methkit_outCG.txt
YE_mix_22sm_methratio_CG.txt
YE_mix_22sm_methratio_out.txt
YE_mix_22sm_methratio_outCG.txt
_4BiGo_lar_F.sam
_tmpBiGo_methratio_boop.gff
accepted_hits (1).bam
accepted_hits.bam
all_MBARI_test.sqltbl.clean.txt
allsamples.txt
allsamples2.txt
allsamplesFinal.txt
allsamplesFinal_noNAs.csv
annotatedCGs.txt
assembly-1.fa
associations_uni_swisspro_012410.tab
associations_uni_swisspro_012410.tabular
austral 2.zip
austral.zip
backup 011013.dmg
bedtools_genomecov_output
bedtools_genomecov_output1
bisulfiteconvert.bothstrands.oyster.v9.fa
bisulfiteconvert.oyster.v9.fa
bisulfiteconvert.revcomp.oyster.v9.fa
bisulfiteconvert.revcompNAME.oyster.v9.fa
bisulfiteconvertv9.nsq
both.fa
bowtie.nameSorted.sam
brite.tar.gz
bsmap_out.sam
bsmap_out_M1.sam
bsmap_out_M3.sam
bsmap_out_T1D3.sam
bsmap_out_T1D5.sam
bsmap_out_T3D3.sam
bsmap_out_T3D5.sam
bsmapoutput_112012.sam
bsmapoutput_122013R1.sam
bsmapoutput_122013R2.sam
bundled_iworm_contigs.fasta
bundled_iworm_contigs.fasta.deBruijn
cbai-transcriptome_v3.1.5.ht2
cdd_delta.loo
cdd_delta.rps
cdd_delta.wcounts
cgigas_tag-seq_8_95.sam
cgigas_tag-seq_9_98.sam
cgigas_tagseq_novoalign_a.txt
cgigas_v9_genome01.tab
cgigas_v9_genome02.tab
cgigasgenome1.tab
cgigasgenome2.tab
chinook_genome_v1.fasta
chrX_data.tar.gz
comb
combsr
condor-stderr-0
condor-stdout-0.sam
condor-stdout-F.sam
condor-stdout-M1.sam
condor-stdout-M3.sam
condor-stdout-T1D3.sam
condor-stdout-T1D5.sam
condor-stdout-T3D3.sam
condor-stdout-T3D5.sam
contigs.db.html
contigs.fa
contigsM32S1.fa
contigsM5S6.fa
contigsM6S5.fa
contigsM7S2.fa
contigsMG1S3.fa
contigsMG2S4.fa
cuffData.db
cvirginica.v1.fa
dgenes.tar.gz
diffmeth_gillVgonad_v9
egenes.tar.gz
env_nr.00.phr
env_nr.00.psd
env_nr.00.psq
env_nr.01.phr
env_nr.01.psq
env_nt.00.nhr
env_nt.00.nsd
env_nt.00.nsq
env_nt.01.nhd
env_nt.01.nhr
env_nt.01.nsd
env_nt.01.nsq
env_nt.02.nhd
env_nt.02.nhr
env_nt.02.nsd
env_nt.02.nsq
env_nt.03.nhr
env_nt.03.nsq
est_others.00.nhr
est_others.00.nsd
est_others.00.nsq
est_others.01.nhr
est_others.01.nsd
est_others.01.nsq
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est_others.03.nsd
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est_others.04.nsd
est_others.04.nsq
est_others.05.nhr
est_others.05.nsd
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est_others.07.nhr
est_others.07.nsd
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est_others.08.nhr
est_others.08.nsd
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est_others.09.nhr
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exon_intersect_CG_u.txt
fasta2tab
fasta2tab_c
fastq_quality_filter_out.fastq
filtered_1000_GTGAAA_L004_R1.fastq.gz
filtered_1000_GTGAAA_L004_R1_trimmed.fastq.gz
filtered_106A_Female_Mix_GATCAG_L004_R1.bam
filtered_106A_Female_Mix_GATCAG_L004_R1.fastq.gz
filtered_106A_Female_Mix_GATCAG_L004_R1_trimmed.fastq.gz
filtered_106A_Female_Mix_GATCAG_L004_R2.fastq.gz
filtered_106A_Female_Mix_GATCAG_L004_R2_trimmed.fastq.gz
filtered_106A_Female_Mix_GATCAG_L007_R1.bam
filtered_106A_Female_Mix_GATCAG_L007_R1.fastq
filtered_106A_Female_Mix_GATCAG_L007_R1.fastq.gz
filtered_106A_Female_Mix_GATCAG_L007_R1_trimmed.fastq.gz
filtered_106A_Male_Mix_TAGCTT_L004_R1.fastq.gz
filtered_106A_Male_Mix_TAGCTT_L004_R1_trimmed.fastq.gz
filtered_106A_Male_Mix_TAGCTT_L004_R2.fastq.gz
filtered_106A_Male_Mix_TAGCTT_L004_R2_trimmed.fastq.gz
filtered_106A_Male_Mix_TAGCTT_L007_R1.bam
filtered_106A_Male_Mix_TAGCTT_L007_R1.fastq
filtered_106A_Male_Mix_TAGCTT_L007_R1.fastq.gz
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filtered_108A_Female_Mix_GGCTAC_L004_R1.fastq.gz
filtered_108A_Female_Mix_GGCTAC_L004_R1_trimmed.fastq.gz
filtered_108A_Female_Mix_GGCTAC_L004_R2.fastq.gz
filtered_108A_Female_Mix_GGCTAC_L004_R2_trimmed.fastq.gz
filtered_108A_Female_Mix_GGCTAC_L007_R1.bam
filtered_108A_Female_Mix_GGCTAC_L007_R1.fastq
filtered_108A_Female_Mix_GGCTAC_L007_R1.fastq.gz
filtered_108A_Female_Mix_GGCTAC_L007_R1_trimmed.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L004_R1.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L004_R1_trimmed.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L004_R2.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L004_R2_trimmed.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L007_R1.bam
filtered_108A_Male_Mix_AGTCAA_L007_R1.fastq
filtered_108A_Male_Mix_AGTCAA_L007_R1.fastq.gz
filtered_108A_Male_Mix_AGTCAA_L007_R1_trimmed.fastq.gz
filtered_1600_GTGGCC_L004_R1.fastq.gz
filtered_1600_GTGGCC_L004_R1_trimmed.fastq.gz
filtered_174gm_A_ACTGATA_L002_R1.fastq
filtered_174gm_A_BiGosperm_L006_R1.fastq.gz
filtered_174gm_A_BiGosperm_L006_R2.fastq.gz
filtered_174gm_A_NoIndex_L006_R1 (paired) trimmed (paired).fastq
filtered_2000_NoIndex_L007_R1.fastq.gz
filtered_2000_NoIndex_L007_R1_trimmed.fastq.gz
filtered_2200_GTTTCG_L004_R1.fastq.gz
filtered_2200_GTTTCG_L004_R1_trimmed.fastq.gz
filtered_400_GTCCGC_L004_R1.fastq.gz
filtered_400_GTCCGC_L004_R1_trimmed.fastq.gz
filtered_400_NoIndex_L006_R1.fastq.gz
filtered_400_NoIndex_L006_R1_trimmed.fastq.gz
filtered_BS_CgLarv_T1D3_TGACCA_L004_R1.fastq
filtered_BS_CgLarv_T1D3_TGACCA_L004_R1.fastq.gz
filtered_BS_CgLarv_T1D3_TGACCA_L004_R2.fastq
filtered_BS_CgLarv_T1D3_TGACCA_L007_R1.fastq
filtered_BS_CgLarv_T1D3_TGACCA_L007_R1.fastq.gz
filtered_BS_CgLarv_T1D3_TGACCA_L007_R2.fastq
filtered_BS_CgLarv_T1D3_TGACCA_L007_R2.fastq.gz
filtered_BS_CgLarv_T1D5_ACAGTG_L004_R1.fastq
filtered_BS_CgLarv_T1D5_ACAGTG_L004_R1.fastq.gz
filtered_BS_CgLarv_T1D5_ACAGTG_L004_R2.fastq
filtered_BS_CgLarv_T1D5_ACAGTG_L007_R1.fastq
filtered_BS_CgLarv_T1D5_ACAGTG_L007_R1.fastq.gz
filtered_BS_CgLarv_T1D5_ACAGTG_L007_R2.fastq
filtered_BS_CgLarv_T1D5_ACAGTG_L007_R2.fastq.gz
filtered_BS_CgLarv_T3D5_CAGATC_L004_R1.fastq
filtered_BS_CgLarv_T3D5_CAGATC_L004_R1.fastq.gz
filtered_BS_CgLarv_T3D5_CAGATC_L004_R2.fastq
filtered_BS_CgLarv_T3D5_CAGATC_L007_R1.fastq
filtered_BS_CgLarv_T3D5_CAGATC_L007_R1.fastq.gz
filtered_BS_CgLarv_T3D5_CAGATC_L007_R2.fastq
filtered_BS_CgLarv_T3D5_CAGATC_L007_R2.fastq.gz
filtered_BS_CgM1_ACTTGA_L004_R1.fastq
filtered_BS_CgM1_ACTTGA_L004_R1.fastq.gz
filtered_BS_CgM1_ACTTGA_L004_R2.fastq
filtered_BS_CgM1_ACTTGA_L004_R2.fastq.gz
filtered_BS_CgM1_ACTTGA_L007_R1.fastq
filtered_BS_CgM1_ACTTGA_L007_R1.fastq.gz
filtered_BS_CgM1_ACTTGA_L007_R2.fastq
filtered_BS_CgM1_ACTTGA_L007_R2.fastq.gz
filtered_BS_CgM3_GATCAG_L004_R1.fastq
filtered_BS_CgM3_GATCAG_L004_R1.fastq.gz
filtered_BS_CgM3_GATCAG_L004_R2.fastq
filtered_BS_CgM3_GATCAG_L004_R2.fastq.gz
filtered_BS_CgM3_GATCAG_L007_R1.fastq
filtered_BS_CgM3_GATCAG_L007_R1.fastq.gz
filtered_BS_CgM3_GATCAG_L007_R2.fastq
filtered_BS_CgM3_GATCAG_L007_R2.fastq.gz
filtered_BSseqGill_L003_R1.fastq.gz
filtered_Bs_CgLarve_T3D3_GCCAAT_L004_R1.fastq
filtered_Bs_CgLarve_T3D3_GCCAAT_L004_R2.fastq
filtered_Bs_CgLarve_T3D3_GCCAAT_L007_R1.fastq
filtered_Bs_CgLarve_T3D3_GCCAAT_L007_R1.fastq.gz
filtered_Bs_CgLarve_T3D3_GCCAAT_L007_R2.fastq
filtered_Bs_CgLarve_T3D3_GCCAAT_L007_R2.fastq.gz
filtered_IA071_ACAGTG_L001_R1.fastq.gz
filtered_IA071_ACAGTG_L007_R1.fastq.gz
filtered_IA071_ACAGTG_L007_R2.fastq.gz
filtered_IA235_ATCACG_L001_R1.fastq.gz
filtered_IA235_ATCACG_L007_R1.fastq.gz
filtered_IA235_ATCACG_L007_R2.fastq.gz
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filtered_IA281_GCCAAT_L007_R1.fastq.gz
filtered_IA281_GCCAAT_L007_R2.fastq.gz
filtered_IA294_CAGATC_L001_R1.fastq.gz
filtered_IA294_CAGATC_L007_R1.fastq.gz
filtered_IA294_CAGATC_L007_R2.fastq.gz
filtered_IA300_TGACCA_L007_R1.fastq.gz
filtered_IA300_TGACCA_L007_R2.fastq.gz
filtered_IA304_CGATGT_L001_R1.fastq.gz
filtered_IA304_CGATGT_L007_R1.fastq.gz
filtered_IA304_CGATGT_L007_R2.fastq.gz
filtered_IA316_ACTTGA_L001_R1.fastq.gz
filtered_IA316_ACTTGA_L007_R1.fastq.gz
filtered_IA316_ACTTGA_L007_R2.fastq.gz
filtered_IA377_TTAGGC_L001_R1.fastq.gz
filtered_IA377_TTAGGC_L007_R1.fastq.gz
filtered_IA377_TTAGGC_L007_R2.fastq.gz
filtered_LTL_NPL32_CAGATC_L005_R1.fastq (2).gz
filtered_LTL_NPL34_ACTTGA_L005_R1.fastq.gz
filtered_LTL_NPL44_GTGAAA_L005_R1.fastq.gz
filtered_LTL_NPL46_GATCAG_L005_R1.fastq.gz
filtered_LTL_NPL56_TAGCTT_L005_R1.fastq.gz
filtered_LTL_NPL61_GGCTAC_L005_R1.fastq.gz
filtered_LTL_NPS15_GAGTGG_L005_R1.fastq.gz
filtered_LTL_NPS24_ACTGAT_L005_R1.fastq.gz
filtered_LTL_NPS29_ATTCCT_L005_R1.fastq.gz
filtered_LTL_NPS36_GTGGCC_L005_R1.fastq.gz
filtered_LTL_NPS50_GTTTCG_L005_R1.fastq.gz
filtered_LTL_NPS58_CGTACG_L005_R1.fastq.gz
filtered_LTL_PL20_ATCACG_L005_R1.fastq.gz
filtered_LTL_PL31_CGATGT_L005_R1.fastq.gz
filtered_LTL_PL43_GCCAAT_L005_R1.fastq.gz
filtered_LTL_PL55_TTAGGC_L005_R1.fastq.gz
filtered_LTL_PL59_TGACCA_L005_R1.fastq.gz
filtered_LTL_PL62_ACAGTG_L005_R1.fastq.gz
filtered_LTL_PS13_CTTGTA_L005_R1.fastq.gz
filtered_LTL_PS16_AGTCAA_L005_R1.fastq.gz
filtered_LTL_PS35_ATGTCA_L005_R1.fastq.gz
filtered_LTL_PS49_CCGTCC_L005_R1.fastq.gz
filtered_LTL_PS53_GTCCGC_L005_R1.fastq.gz
filtered_LTL_PS63_AGTTCC_L005_R1.fastq.gz
filtered_NWS_ACTGAT_L003_R1.fastq.gz
filtered_QPX_ATCC_10C_CGTACG_L001_R1RNAseq.bam
filtered_QPX_ATCC_10C_CGTACG_L001_R1_trimmed.fastq
filtered_RBT_Orthomyxovirus_GTAGAG_L007_R1.fastq.gz
filtered_SB_MBD_BSseq_NoIndex_L003_R1.fastq.gz
filtered_Unlabeled_NoIndex_L003_R1.fastq.gz
filtered_WSO_ATTCCT_L003_R1.fastq.gz
filtered_WSP_CCGTCC_L003_R1.fastq.gz
filtered_Y38_control_GTGAAA_L005_R1.fastq
filtered_Y38_control_GTGAAA_L005_R1_tr.fastq
filtered_Y38_control_GTGAAA_L005_R2.fastq
filtered_Y38_control_GTGAAA_L005_R2_tr.fastq
filtered_Y54_Mix_GTGGCC_L005_R1.fastq
filtered_Y54_Mix_GTGGCC_L005_R1.fastq.gz
filtered_Y54_Mix_GTGGCC_L005_R1_tr.fastq
filtered_Y54_Mix_GTGGCC_L005_R2.fastq
filtered_Y54_Mix_GTGGCC_L005_R2.fastq.gz
filtered_Y54_Mix_GTGGCC_L005_R2_tr.fastq
filtered_Y54_Mix_GTGGCC_L007_R1.fastq.gz
fish546_14_Trinity.fasta
fish546_14_Trinity.tab
fish546_14_Trinity_ls_length.tab
fish546_14_Trinity_ls_length2.tab
fish546_ICH_assemb_sorted.bam
fish546_of_BowtieOut.sam
fish546_unknown_swissprot.xml
fish546mod3.Arc
fish546mod3.contig
fish546mod3.edge
fish546mod3.preArc
fish546mod3.updated.edge
fish546mod3.vertex
from_sff.fastq
fuzznuc (5)output.txt
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gene_association.goa_uniprot
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gene_intersect_CG_u.txt
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genes
genes.fa
genes.tar.gz
gigas_rnaseq.tar.gz
gonad_methylkit.txt
gonad_methylkit_QC.txt
gp_association.goa_uniprot
gp_association.goa_uniprot.gz
gp_association_03212014
gp_association_goa_uniprot_2
gp_information.goa_uniprot
gp_information.goa_uniprot.gz
gp_information_goa_uniprot_03212014
ht2_base.1.ht2
ht2_base.2.ht2
ht2_base.4.ht2
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ht2_base.6.ht2
idmapping_selected.tab
idmapping_selected.tab.gz
inchworm.K25.L25.DS.fa
intron_intersect_CG_u.txt
iplant_vcf_to_gff.gff
jake.zip
jay.zip
jellyfish.kmers.fa
joined tiles to sam.interval
kgml.tar.gz
lane1_NoIndex_L001_R1_001.fastq
lane1_NoIndex_L001_R1_001.fastq.gz
lane1_NoIndex_L001_R1_002.fastq
lane1_NoIndex_L001_R1_002.fastq.gz
lane1_NoIndex_L001_R1_003.fastq
lane1_NoIndex_L001_R1_003.fastq.gz
lane1_NoIndex_L001_R1_004.fastq
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lane1_NoIndex_L001_R1_005.fastq
lane1_NoIndex_L001_R1_005.fastq.gz
lane1_NoIndex_L001_R1_006.fastq
lane1_NoIndex_L001_R1_006.fastq.gz
lane1_NoIndex_L001_R1_007.fastq
lane1_NoIndex_L001_R1_007.fastq.gz
lane1_NoIndex_L001_R1_008.fastq
lane1_NoIndex_L001_R1_008.fastq.gz
lane1_NoIndex_L001_R1_009.fastq
lane1_NoIndex_L001_R1_009.fastq.gz
lane1_NoIndex_L001_R1_010.fastq
lane1_NoIndex_L001_R1_010.fastq.gz
lane1_NoIndex_L001_R1_011.fastq
lane1_NoIndex_L001_R1_011.fastq.gz
lane1_NoIndex_L001_R1_012.fastq
lane1_NoIndex_L001_R1_012.fastq.gz
lane1_NoIndex_L001_R1_013.fastq
lane1_NoIndex_L001_R1_013.fastq.gz
lane1_NoIndex_L001_R1_014.fastq
lane1_NoIndex_L001_R1_014.fastq.gz
left_kept_reads.bam
left_kept_reads.mapped.bam
left_kept_reads_seg1.bam
left_kept_reads_seg1.fq.z
left_kept_reads_seg2.bam
left_kept_reads_seg2.fq.z
left_kept_reads_seg3.bam
left_kept_reads_seg3.fq.z
left_kept_reads_seg4.bam
left_kept_reads_seg4.fq.z
left_kept_reads_seg4_unmapped.bam
left_kept_reads_unmapped.bam
ligand.tar.gz
longest_orfs.gff3.inx
m130619_081336_42134_c100525122550000001823081109281326_s1_p0.bas.h5
mCpG_5x50_closest_MgoSNP
mRNA_UnmethylatedCGs_50percent.txt
mRNA_v9_CGs.txt
mcf_M1_R1.fastq
mcf_M1_R2.fastq
mcf_M3_R1.fastq
mcf_M3_R2.fastq
mcf_T1D3_R1.fastq
mcf_T1D3_R2.fastq
mcf_T1D5_R1.fastq
mcf_T1D5_R2.fastq
mcf_T3D3_R1.fastq
mcf_T3D3_R2.fastq
mcf_T3D5_R1.fastq
mcf_T3D5_R2.fastq
merged.annotated.gtf
merged.gtf
merged_with_ref_ids.gtf
methratio_integers.txt
methratio_out.txt
methratio_out_CG.txt
methratio_out_CG5x.txt
methratio_out_CG5x_IGV_M1.bed
methratio_out_CG5x_IGV_M1.txt
methratio_out_CG5x_IGV_M3.bed
methratio_out_CG5x_IGV_M3.txt
methratio_out_CG5x_IGV_T1D3.bed
methratio_out_CG5x_IGV_T1D3.txt
methratio_out_CG5x_IGV_T1D5.bed
methratio_out_CG5x_IGV_T1D5.txt
methratio_out_CG5x_IGV_T3D3.bed
methratio_out_CG5x_IGV_T3D3.txt
methratio_out_CG5x_IGV_T3D5.bed
methratio_out_CG5x_IGV_T3D5.txt
methratio_out_CG_M1.txt
methratio_out_CG_M1a.txt
methratio_out_CG_M3.txt
methratio_out_CG_T1D3.txt
methratio_out_CG_T1D5.txt
methratio_out_CG_T3D3.txt
methratio_out_CG_T3D5.txt
methratio_out_F.txt
methratio_out_M1.txt
methratio_out_M1CG.txt
methratio_out_M1_CG.txt
methratio_out_M1_CGna.txt
methratio_out_M3.txt
methratio_out_M3CG.txt
methratio_out_M3_CG.txt
methratio_out_M3_CGna.txt
methratio_out_T1D3.txt
methratio_out_T1D3CG.txt
methratio_out_T1D3_CG.txt
methratio_out_T1D3_CGna.txt
methratio_out_T1D5.txt
methratio_out_T1D5CG.txt
methratio_out_T1D5_CG.txt
methratio_out_T1D5_CGna.txt
methratio_out_T3D3.txt
methratio_out_T3D3CG.txt
methratio_out_T3D3_CG.txt
methratio_out_T3D3_CGna.txt
methratio_out_T3D5.txt
methratio_out_T3D5CG.txt
methratio_out_T3D5_CG.txt
methratio_out_T3D5_CGna.txt
methratiopython_112012.txt
methratiopython_122013R1.txt
methratiopython_122013R2.txt
methratiopython_174gm_v9.txt
methratiopython_174gm_v9_90 copy.csv
methratiopython_174gm_v9_90.txt
methratiopython_174gm_v9_M.txt
mk_CgM1.txt
mk_methratio_out_CG.txt
mk_methratio_out_CG5x.txt
mzXML_QE.tar
nd_filtered_Y54_Mix_GTGGCC_L007_R1.fastq
nr.00.phr
nr.00.psd
nr.00.psq
nr.01.phr
nr.01.psd
nr.01.psq
nr.02.phr
nr.02.psd
nr.02.psq
nr.03.phr
nr.03.psd
nr.03.psq
nr.04.phr
nr.04.psd
nr.04.psq
nr.05.phr
nr.05.psd
nr.05.psq
nr.06.phr
nr.06.psd
nr.06.psq
nr.07.phr
nr.07.psd
nr.07.psq
nr.08.phr
nr.08.psd
nr.08.psq
nr.09.phr
nr.09.psd
nr.09.psq
nr.10.phr
nr.10.psd
nr.10.psq
nr.11.phr
nr.11.psd
nr.11.psq
nr.12.phr
nr.12.psd
nr.12.psq
nr.13.psq
nt.00.nhr
nt.00.nsq
nt.01.nhr
nt.01.nsq
nt.02.nhr
nt.02.nsq
nt.03.nhr
nt.03.nsq
nt.04.nhr
nt.04.nsq
nt.05.nhr
nt.05.nsq
nt.06.nhr
nt.06.nsq
nt.07.nhr
nt.07.nsq
nt.08.nhr
nt.08.nsq
nt.09.nhr
nt.09.nsq
nt.10.nhr
nt.10.nsq
nt.11.nhr
nt.11.nsq
nt.12.nhr
nt.12.nsq
nt.13.nsq
nt.14.nhr
nt.14.nsq
nt.15.nhr
nt.15.nsq
nt.gz
olurida_transcriptome_v3a.fasta
oly-rad-01.fa
olyfemale1.vcf
olyo-rad-01.fastq
orf.fna
orfM7S2.fna
orfMG1S3.fna
orfMG2S4.fna
orfMG3S1.fna
orfMG5S6.fna
orfMG6S5.fna
oyster.v9.1.bt2
oyster.v9.2.bt2
oyster.v9.4.bt2
oyster.v9.fa
oyster.v9.fa.masked
oyster.v9.rev.1.bt2
oyster.v9.rev.2.bt2
oyster.v9_90-7.clc
oyster.v9_90.fa
oyster.v9_90.fa.masked
oyster.v9_90.fa.txt
oyster.v9_90_allCGs
oyster.v9i.4.bt2
oyster_v9_CG_fuzznuc.output
oyster_v9_M_Galaxy11-[NuPoP_prediction_in_text_format].txt
oyster_v9_M_Galaxy13-[Splice_site_signal_predictions_in_GFF_format].gff
oyster_v9_M_fuzznuc_CG.gff
oysterv9_90.fa.masked
pathway.tar.gz
pathway_dbget.tar.gz
pepxml_OT1.tar
pfam.domtblout.html
pfu_genome1.0.fasta.gz
pileup_output
preads-data.zip
protein.actions.detailed.v9.05.txt
protein.actions.detailed.v9.05.txt.gz
protein.actions.v9.05.txt
protein.actions.v9.05.txt.gz
protein.links.detailed.v9.05.txt.gz
protein.links.v9.05.txt.gz
protein.sequences.v9.05.fa
protein.sequences.v9.05.fa.gz
proteins.prodigal.faa
pseudonitz_blastp_03202014
qDOD_scaffold_sequence.txt
query.fa
rRNAonlyrefUnmappedMegablastGIs.fa
readsToComponents.out.sort
rebuilt.gtf
refseq_genomic.00.nsq
refseq_genomic.01.nsq
refseq_genomic.02.nsq
refseq_genomic.03.nsq
refseq_genomic.04.nsq
refseq_genomic.05.nsq
refseq_genomic.06.nsq
refseq_genomic.07.nsq
refseq_genomic.08.nsq
refseq_genomic.09.nsq
refseq_genomic.10.nsq
refseq_genomic.11.nsq
refseq_genomic.12.nsq
refseq_genomic.13.nsq
refseq_genomic.14.nsq
refseq_genomic.15.nsq
refseq_genomic.16.nsq
refseq_genomic.17.nsq
refseq_genomic.18.nsq
refseq_genomic.19.nsq
refseq_genomic.20.nsq
refseq_genomic.21.nsq
refseq_genomic.22.nsq
refseq_genomic.23.nsq
refseq_genomic.24.nsq
refseq_genomic.25.nsq
refseq_genomic.26.nsq
refseq_genomic.27.nsq
refseq_genomic.28.nsq
refseq_genomic.29.nsq
refseq_genomic.30.nsq
refseq_genomic.31.nsq
refseq_genomic.32.nsq
refseq_genomic.33.nsq
refseq_genomic.34.nsq
refseq_genomic.35.nsq
refseq_genomic.36.nsq
refseq_genomic.37.nsq
refseq_genomic.38.nsq
refseq_genomic.39.nsq
refseq_genomic.40.nsq
refseq_genomic.41.nsq
refseq_genomic.42.nsq
refseq_genomic.43.nsq
refseq_genomic.44.nsq
refseq_genomic.45.nsq
refseq_genomic.46.nsq
refseq_genomic.47.nsq
refseq_genomic.48.nsq
refseq_genomic.49.nsq
refseq_genomic.50.nsq
refseq_genomic.51.nsq
refseq_genomic.52.nsq
refseq_genomic.53.nsq
refseq_genomic.54.nsq
refseq_genomic.55.nsq
refseq_genomic.56.nsq
refseq_genomic.57.nsq
refseq_genomic.58.nsq
refseq_genomic.59.nsq
refseq_genomic.60.nsq
refseq_genomic.61.nsq
refseq_genomic.62.nsq
refseq_genomic.63.nsq
refseq_genomic.64.nsq
refseq_genomic.65.nsq
refseq_genomic.66.nsq
refseq_genomic.67.nsq
refseq_genomic.68.nsq
refseq_genomic.69.nsq
refseq_genomic.70.nsq
refseq_protein.00.phr
refseq_protein.00.psd
refseq_protein.00.psq
refseq_protein.01.phr
refseq_protein.01.psd
refseq_protein.01.psq
refseq_protein.02.phr
refseq_protein.02.psd
refseq_protein.02.psq
refseq_protein.03.phr
refseq_protein.03.psd
refseq_protein.03.psq
refseq_protein.04.phr
refseq_protein.04.psd
refseq_protein.04.psq
refseq_protein.05.phr
refseq_protein.05.psd
refseq_protein.05.psq
refseq_protein.06.phr
refseq_protein.06.psd
refseq_protein.06.psq
refseq_protein.07.phr
refseq_protein.07.psd
refseq_protein.07.psq
refseq_protein.08.phr
refseq_protein.08.psq
refseq_rna.00.nhr
refseq_rna.00.nsd
refseq_rna.00.nsq
refseq_rna.01.nhr
refseq_rna.01.nsq
refseq_rna.02.nsq
refseqgene.nsq
s_1.GACTAAGA_1.fastq
s_1.GACTAAGA_2.fastq
s_1.GTGTCTAC_1.fastq
s_1.GTGTCTAC_2.fastq
s_1.bam
sample1.bam
sample_AAGACG.fq
sample_AAGACG.tags.tsv
sample_AAGCTA.fq
sample_AAGCTA.tags.tsv
sample_AATATC.fq
sample_AATATC.tags.tsv
sample_AATGAG.fq
sample_AATGAG.tags.tsv
sample_ACAAGA.fq
sample_ACAGCG.fq
sample_CACCTC.fq
sample_CAGGCA.fq
sample_CCCGGT.fq
sample_CCCTAA.fq
scaffolding_entries.sam
seq_genome.tar.gz
seq_nuc.tar.gz
seq_nuc_dgenes.tar.gz
seq_nuc_egenes.tar.gz
seq_pep.tar.gz
seq_pep_dgenes.tar.gz
seq_pep_egenes.tar.gz
single.fa
smrtanalysis-2.1.1-ubuntu-12.04.run
solid0078_20091105_BB3 RNA-Seq.bam
solid0078_20091105_BB3 RNA-Seq.sam
solid0078_20091105_BB3 mapping.bam
solid0078_20091105_BB3 mapping.sam
solid0078_20091105_BB3.1.fastq
solid0078_20091105_BB3.csfasta
solid0078_20091105_BB3.fastq
solid0078_20091105_BB3.qual
solid0078_20091105_DH2.csfasta
solid0078_20091105_DH2.qual
solid0078_20091105_DH3.csfasta
solid0078_20091105_DH3.fastq
solid0078_20091105_DH3.qual
solid0078_20091105_RbbertsLab_GE_F3.csfasta
solid0078_20091105_RbbertsLab_GE_F3_QV.qual
solid0078_20091105_RobertsLab_GE_F3_tr_RNA-Seq.sam
solid0078_20091105_RobertsLab_GE_F3_trimmed.fastq
solid0078_20100107_Roberts_GC_F3.csfasta
solid0078_20100107_Roberts_GC_F3_QV.qual
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_19106VT.csfasta
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_19106VT.qual
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22.qual
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_SC.qual
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_SE.qual
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_RE22.csfasta
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SC.csfasta
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SE.csfasta
solid0078_20110412_SB_METH.csfasta
solid0078_20110412_SB_METH.qual
solid0078_20110412_SB_UNMETH.csfasta
solid0078_20110412_SB_UNMETH.qual
sorted.bam
steven.zip
string_protein_v9.00.phr
string_protein_v9.00.psq
string_protein_v9.01.phr
string_protein_v9.01.psq
stringtie_merged.gtf
suckers.mov
swissprot
swissprot gene annotation 011513
swissprot.gz
swissprot.psq
swissprotdb_03212014.psq
tab_1
tab_1_length
target.1.ebwt
target.rev.1.ebwt
test.txt
test_adp
test_gonad.txt
trinity_out.tar.gz
trinity_out.tgz
uniprot_db_010913.psq
uniprot_sprot.fasta
uniprot_sprot.fasta.psq
uniprot_sprot.psq
uniprot_sprot_010913.fasta
uniprot_sprot_03212014.fasta
uniprot_sprot_db.psq
unmapped.bam
virus_sequences.fasta
wengan_v0.2.sif.html
zE_th_genomecov.bedgraph
zE_th_genomecov.bedgraph.tdf
zE_tophat.bam
zFgo_th_genomecov.bedgraph
zFgo_th_genomecov.bedgraph.tdf
zFgo_tophat.bam
zG3_th_bedgraph.tdf
zG3_th_genomecov.bedgraph
zG3_th_genomecov.bedgraph.tdf
zG3_tophat.bam
zG3_v9.bed
zMan1_th_genomecov.bedgraph
zMan1_th_genomecov.bedgraph.tdf
zMan1_tophat.bam
zMgo13_th_genomecov.bedgraph
zMgo13_th_genomecov.bedgraph.tdf
zMgo13_tophat.bam
zMgo_th_genomecov.bedgraph
zMgo_th_genomecov.bedgraph.tdf
zMgo_tophat.bam
zearly_th_genomecov.bedgraph
zearly_th_genomecov.bedgraph.tdf
zearly_tophat.bam
zlate_th_genomecov.bedgraph
zlate_th_genomecov.bedgraph.tdf
zlate_tophat.bam
{dircode}_descriptions.txt