| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | AA | AB | AC | AD | AE | AF | AG | AH | AI | AJ | AK | AL | AM | AN | AO | AP | AQ | AR | AS | AT | AU | AV | AW | AX | AY | AZ | BA | BB | |
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1 | Library_ID | Lib_name | Species | Tissue | Sample prep type | Experiment | Starting RNA (ug) | Post-Ribominus | non-ribo yield | Date of Ribominus | Person Ribominusing | Post-PolyA (ug) | poly-a yield | Date of PolyA | Person PolyA-ing | Fragmentation Date | Post-Frag RNA(ug) | Yield from frag | RNA used for cDNA(ug) | cDNA (post purification)(ug) | cDNA conc. (post size select/purification) (ng) | date of final cDNA prep | comments | Platform | Quantity Sequenced (% lane) | Order # | Data Folder | HTGU Sample ID | Date Submitted | Date Received | Output ~# reads | SRA ID | SRA Submission Date | SRA Release Date | Library Location (tube) | Data Location | Facility tube labeling TOP | Facility tube labeling SIDE | HTGU Machine ID | Result Notes | ||||||||||||||
2 | 1 | Vibrio tubiashi | autoclaved C.gigas | MICROBExpress | Vtub exposed to C.gigas tissue | Sam's notebook 20081218; submitted just Vtub+gigas RNA | Illumina | Roberts mRNA | Vibrio (our writing) Lib 1/23/09 DB 7.82ng/uL 200bp | |||||||||||||||||||||||||||||||||||||||||||||
3 | 2 | Mercenaria mercenaria | Illumina | clam | clam mRNA Seq lib | Illumina clam mRNA SEQ 21.3ng/uL 200bp | ||||||||||||||||||||||||||||||||||||||||||||||||
4 | 3 | lean | Lake trout | Lean | L (our writing) | Lean (our writing) mRNA SEQ 200bp Roberts lab 3ng/uL | ||||||||||||||||||||||||||||||||||||||||||||||||
5 | 4 | siscowet | Lake trout | Siscowet | S (our writing) | Siscowets (our writing) mRNA SEQ 200bp Roberts lab 6.24ng/uL | ||||||||||||||||||||||||||||||||||||||||||||||||
6 | 5 | yoji1 | Coho | Illumina | Yoji-1 | Roberts mRNA Yoji | library Illumina 5/12/09 200bp32.6ng/uL | |||||||||||||||||||||||||||||||||||||||||||||||
7 | 6 | yoji2 | Coho | Illumina | 9WFA FCE | Roberts mRNA | Illumina 9WFAFCE mRNA 6/24/09 | |||||||||||||||||||||||||||||||||||||||||||||||
8 | 7 | DH2 | C. gigas | gill | Ribominus/polyA | Drayton Harbor | 10 | 3.4 | 34.00% | 9/15/2009 | Mac | 0.94 | 27.65% | 9/21/2009 | Mac/Sam | 9/21/2009 | 0.3 | 31.91% | 0.042 | 0.15 | NA | 10/2/2009 | interior gel slices | SOLiD | DH2 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH2.csfasta | DH2 (our writing) | DH2 (our writing) | ||||||||||||||||||||||||||
9 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH2.qual | |||||||||||||||||||||||||||||||||||||||||||||||||||||
10 | 8 | DH3 | C. gigas | gill | Ribominus/polyA | Drayton Harbor | 10 | 3.4 | 34.00% | 9/15/2009 | Mac | 0.94 | 27.65% | 9/21/2009 | Mac/Sam | 9/21/2009 | 0.3 | 31.91% | 0.042 | 0.15 | NA | 10/2/2009 | exterior gel slices | SOLiD | DH3 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH3.csfasta | DH3 (our writing) | DH3 (our writing) | ||||||||||||||||||||||||||
11 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH3.qual | |||||||||||||||||||||||||||||||||||||||||||||||||||||
12 | 9 | BB3 | C. gigas | gill | Ribominus/polyA | Big Beef Creek | 10 | 2.7 | 27.00% | 9/15/2009 | Mac | 0.93 | 34.44% | 9/21/2009 | Mac/Sam | 9/21/2009 | 0.4 | 43.01% | 0.06 | NA | NA | 10/2/2009 | SOLiD | BB3 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_BB3.csfasta | BB3 (our writing) | BB3 (our writing) | |||||||||||||||||||||||||||
13 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_BB3.qual | |||||||||||||||||||||||||||||||||||||||||||||||||||||
14 | 10 | RBC 4 | Trout | RBC | Ribominus/polyA | Control | 8.6 | 0.99 | 11.51% | 9/16/2009 | Mac | 0.33 | 33.75% | 0.093 | 27.83% | 0.093 | NA | 0.0098 | SOLiD | RBC 4 | RBC 4 (our writing) | 3.41ng/uL Roberts 10/28 | ||||||||||||||||||||||||||||||||
15 | 11 | RBC 1 | Trout | RBC | Ribominus/polyA | Poly I:C | 7.2 | 1.5 | 20.83% | 9/16/2009 | Mac | 0.36 | 24.12% | 0.1334 | 36.87% | 0.1334 | NA | 0.01234 | SOLiD | RBC 1 | RBC 1 (our writing) | Roberts 8.68ng/uL 10/27/09 | ||||||||||||||||||||||||||||||||
16 | 12 | RBC 2 | Trout | RBC | Ribominus | Control | 8.565 | 0.2322 | 2.71% | 9/16/2009 | Mac | NA | NA | 0.0018 | 0.78% | 0.0018 | NA | 0.03568 | SOLiD | RBC 2 | RBC 2 (our writing) | 10/28 Roberts 37.1ng/uL | ||||||||||||||||||||||||||||||||
17 | 13 | RBC 3 | Trout | RBC | Ribominus | Poly I:C | 8.4 | 0.7824 | 9.31% | 9/16/2009 | Mac | NA | NA | 0.531 | 67.87% | 0.177 | NA | 0.01078 | SOLiD | RBC 3 | RBC 3 (our writing) | 8.47ng/uL Roberts 10/28 | ||||||||||||||||||||||||||||||||
18 | 14 | GE | C.gigas | larvae | Ribominus | Exposed | 0.8 | #DIV/0! | NA | NA | 0.3 | 0.18 | SOLiD | GE | 10/7/2009 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_RbbertsLab_GE_F3_QV.qual | GE (our writing) | GE (our writing) | ||||||||||||||||||||||||||||||||||||
19 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_RbbertsLab_GE_F3.csfasta | |||||||||||||||||||||||||||||||||||||||||||||||||||||
20 | 15 | GC | C.gigas | larvae | Ribominus | Control | 2.4 | 1.9 | 79.17% | NA | NA | NA | NA | NA | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3_QV.qual | |||||||||||||||||||||||||||||||||||||||
21 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3.csfasta | |||||||||||||||||||||||||||||||||||||||||||||||||||||
22 | 16 | 2L | Herring | liver | polyA (x2) | 2L HKOD09 | 107.85 | NA | NA | 2.78 | 2.58% | 0.272 | 27.20% | 0.272 | NA | 0.09218 | Ginger's Lab | SOLiD | NA | |||||||||||||||||||||||||||||||||||
23 | 17 | 4L | Herring | liver | polyA (x2) | 4L HTOG09 | 104.45 | NA | NA | 1.286 | 1.23% | 0.338 | 33.80% | 0.338 | NA | 0.4012 | Ginger's Lab | SOLiD | NA | |||||||||||||||||||||||||||||||||||
24 | 18 | 3L | Herring | liver | polyA (x2) | 3L HSITK09 | 54.45 | NA | NA | 2.132 | 3.92% | 0.1678 | 16.78% | 0.1678 | NA | 1.7694 | Ginger's Lab | SOLiD | NA | |||||||||||||||||||||||||||||||||||
25 | 19 | 6L | Herring | liver | polyA (x2) | 6L HPWS09 | 85.15 | NA | NA | 1.394 | 1.64% | 0.5204 | 52.04% | 0.5204 | NA | 1.0278 | Ginger's Lab | SOLiD | NA | |||||||||||||||||||||||||||||||||||
26 | 20 | SR01 | Herring | liver | polyA(x2) | pool from all locations | 500 | NA | NA | 5.3 | 1.06% | NA | NA | NA | NA | NA | NA | MoGene | 454 | NA | 10/27/2009 | 11/19/2009 | SRX022719 | 04/14/2011 | ||||||||||||||||||||||||||||||
27 | 21 | SR02 | Herring | gonad/ovary | polyA(x2) | pool from all locations | 90 | NA | NA | 3.26 | 3.62% | NA | NA | NA | NA | NA | NA | MoGene | 454 | NA | 10/27/2009 | 11/19/2009 | SRX082042 | 12/11/2017 | ||||||||||||||||||||||||||||||
28 | 22 | 1 G/O HPWS09 | Herring | gonad/ovary | polyA(x2) | 20 | NA | NA | 0.2596 | 1.30% | NA | NA | NA | NA | 92.9 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
29 | 23 | CT | yellow perch | ? | polyA(x2) | 12 | NA | NA | 0.346 | 2.88% | NA | NA | NA | NA | 638 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
30 | 24 | PQ | yellow perch | ? | polyA(x2) | 12 | NA | NA | 0.01992 | 0.17% | NA | NA | NA | NA | 207.7 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
31 | 25 | WB | yellow perch | ? | polyA(x2) | 12 | NA | NA | 0.12672 | 1.06% | NA | NA | NA | NA | 168.1 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
32 | 26 | Lean | Lake Trout | muscle pool | polyA(x2) | 20 | NA | NA | 0.1556 | 0.78% | NA | NA | NA | NA | 534.9 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
33 | 27 | Sisco | Lake Trout | muscle pool | polyA(x2) | 20 | NA | NA | 0.0696 | 0.35% | NA | NA | NA | NA | 422.9 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
34 | 28 | CC | black abalone | DG pool | polyA(x2) | 45 | NA | NA | 0.98 | 2.18% | NA | NA | NA | NA | 137.9 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
35 | 29 | CE | black abalone | DG pool | polyA(x2) | 45 | NA | NA | 0.878 | 1.95% | NA | NA | NA | NA | 230.01 | Ginger's Lab | SOLiD | |||||||||||||||||||||||||||||||||||||
36 | 30 | SC | black abalone | DG pool | polyA(x2) | Abalone Dg Exp1 | 30 | NA | NA | 0.57 | 1.90% | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | |||||||||||||||||||||||||||||||||||
37 | 31 | SE | black abalone | DG pool | polyA(x2) | Abalone Dg Exp1 | 30 | NA | NA | 0.462 | 1.54% | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | |||||||||||||||||||||||||||||||||||
38 | 32 | SB unmeth C.gigas | C.gigas | gill pool | gDNA | https://img.skitch.com/20111020-p2guuhtqgff481139jikgdyn46.png | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_UNMETH.csfasta | |||||||||||||||||||||||||||||
39 | 33 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_UNMETH.qual | ||||||||||||||||||||||||||||||||||||||||||||||||||||
40 | 34 | SB meth C.gigas | C.gigas | gill pool | gDNA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_METH.csfasta | ||||||||||||||||||||||||||||||
41 | 35 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_METH.qual | ||||||||||||||||||||||||||||||||||||||||||||||||||||
42 | 36 | MA | Mercenaria mercenaria | gill pool | polyA(x2) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | |||||||||||||||||||||||||||||||
43 | 37 | BX | Mercenaria mercenaria | gill pool | polyA(x2) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | |||||||||||||||||||||||||||||||
44 | 38 | Vt RE22 | Vibrio tubiashii (RE22) | gDNA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | ||||||||||||||||||||||||||||||||
45 | 39 | Vt STRAIN | Vibrio tubiashii (ATCC 19106) | gDNA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | SOLiD | 3/10/2011 | ||||||||||||||||||||||||||||||||
46 | 40 | mRNA1 | Lake Trout | mRNA sent to us by Rick. Submitted to HTGU for sequencing | Illumina | 3/21/2011 | 4/11/2011 | |||||||||||||||||||||||||||||||||||||||||||||||
47 | 41 | mRNA2 | Lake Trout | mRNA sent to us by Rick. Submitted to HTGU for sequencing | Illumina | 3/21/2011 | 4/11/2011 | |||||||||||||||||||||||||||||||||||||||||||||||
48 | 42 | mRNA3 | Lake Trout | mRNA sent to us by Rick. Submitted to HTGU for sequencing | Illumina | 3/21/2011 | 4/11/2011 | |||||||||||||||||||||||||||||||||||||||||||||||
49 | 43 | mRNA4 | Lake Trout | mRNA sent to us by Rick. Submitted to HTGU for sequencing | Illumina | 3/21/2011 | 4/11/2011 | |||||||||||||||||||||||||||||||||||||||||||||||
50 | 44 | Clam RAD | Mercenaria mercenaria | RAD | Submitted to HTGU for sequencing | Illumina | 5/13/2011 | 5/19/2011 | ||||||||||||||||||||||||||||||||||||||||||||||
51 | 45 | P_Ab_Air | Pinto Abalone? | larvae | 400ppm;PNW genomics | 40ug | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 50 | FCD0DN1 | 9/8/2011 | 11/21/2011 | 50 mill | NGS Drive (Pro) | Illumina HiSeq | Run in same lane as 1000ppm sample | ||||||||||||||||||||||||||||||||||||||
52 | 46 | P_Ab_CO2 | Pinto Abalone? | larvae | 1000ppm;PNW genomics | 40ug | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 50 | FCD0DN1 | 9/8/2011 | 11/21/2011 | 50 mill | NGS Drive (Pro) | Illumina HiSeq | Run in same lane as 400ppm sample. | ||||||||||||||||||||||||||||||||||||||
53 | 47 | SB MBD meth (bisulfite) | C.gigas | gill pool | gDNA, methylation enriched | Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for library prep, bisulfite conversion and sequencing | Illumina, 36bp, single-end | 100 | samwhite_101974 | 12/7/2011 | 1/25/2012 | 139million | SRX327373 | 10/22/2013 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_BSseqGill_L003_R1.fastq | |||||||||||||||||||||||
54 | 48 | 400 | O. conchaphila | larvae | NA | 37 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 100 | samwhite_102159 | 1/4/2012 | 1/25/2012 | 195million | NGS Drive (Pro) | Illumina HiSeq | Run in lane by itself. | ||||||||||||||||||||||||
55 | 49 | 2000 | O. conchaphila | larvae | NA | 37 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 100 | samwhite_102159 | 1/4/2012 | 1/25/2012 | 195million | NGS Drive (Pro) | Illumina HiSeq | Run in lane by itself. | ||||||||||||||||||||||||
56 | 50 | 400 | O. lurida | larvae pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 25 | samwhite_103936 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
57 | 51 | 1000 | O. lurida | larvae pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 25 | samwhite_103936 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
58 | 52 | 1600 | O. lurida | larvae pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 25 | samwhite_103936 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
59 | 53 | 2200 | O. lurida | larvae pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 25 | samwhite_103936 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
60 | 54 | QPX DNA | QPX | QPX | DNazol | Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103939 | 7/11/2012 | 7/31/2012 | SRX197335 | 12/25/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||
61 | 55 | QPX ATCC 10C | QPX | QPX | polyA(x2) | Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103938 | 7/11/2012 | 7/31/2012 | SRX197332 | 12/25/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||
62 | 56 | QPX ATCC RT | QPX | QPX | polyA(x2) | Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103938 | 7/11/2012 | 7/31/2012 | SRX197332 | 12/25/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||
63 | 57 | WSO | black abalone | DG pool | total RNA | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103944 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
64 | 58 | WS + P | black abalone | DG pool | total RNA | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103944 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
65 | 59 | NWS | black abalone | DG pool | total RNA | Friedman | Submitted to HTGU for sequencing | Illumina, 36bp, single-end | 33 | samwhite_103944 | 7/9/2012 | 8/7/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
66 | 60 | 106A Female Mix | O. lurida | gonad pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 72bp, paired-end | 25 | samwhite_104086 | 7/18/2012 | 12/19/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
67 | 61 | 106A Male Mix | O. lurida | gonad pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 72bp, paired-end | 25 | samwhite_104086 | 7/18/2012 | 12/19/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
68 | 62 | 108A Female Mix | O. lurida | gonad pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 72bp, paired-end | 25 | samwhite_104086 | 7/18/2012 | 12/19/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
69 | 63 | 108A Male Mix | O. lurida | gonad pool | polyA(x2) | Friedman | Submitted to HTGU for sequencing | Illumina, 72bp, paired-end | 25 | samwhite_104086 | 7/18/2012 | 12/19/2012 | Illumina HiSeq | |||||||||||||||||||||||||||||||||||||||||
70 | 64 | 400 & 2800 | C. gigas | gill | 3' targeted with barcode | Secondary Stress (FHL) | Samples sent to Eli Meyer for sequencing | 9/12/2012 | 11/1/2012 | 12.6 million | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/ETS_tagseq.zip | Illumina HiSeq | 8 samples run together (barcoded) | |||||||||||||||||||||||||||||||||||||||||
71 | 65 | 174.gm | C.gigas | sperm | gDNA | Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes | N/A | Submitted to HTGU for sequencing | Illumina, Whole Methylome, 72bp PE | samwhite_105029 | 10/11/2012 | 12/19/2012 | SRX386228 | 12/16/2013 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_174gm_A_NoIndex_L006_R1.fastq | |||||||||||||||||||||||||||||||||||||||
72 | 66 | http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_174gm_A_NoIndex_L006_R2.fastq | ||||||||||||||||||||||||||||||||||||||||||||||||||||
73 | 67 | SB_Pool | C.gigas | gill pool | total RNA | 5ug | Submitted to Genomce Sciences for sequencing | Illumina, 50bp, paired-end | 50 | 5/14/2013 | 7/9/2013 | |||||||||||||||||||||||||||||||||||||||||||
74 | 68 | 174_gm | C.gigas | gonad | total RNA | Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes | 5ug | Submitted to Genomce Sciences for sequencing | Illumina, 50bp, paired-end | 50 | 5/14/2013 | 7/9/2013 | SRX390346 | 12/16/2013 | ||||||||||||||||||||||||||||||||||||||||
75 | 69 | Pat muscle | O. conchaphila | muscle | gDNA | N/A | Submitted to UW PacBio Sequencing | PacBio 20kb C2 | 6 | 6/7/2013 | 6/20/2013 | |||||||||||||||||||||||||||||||||||||||||||
76 | 70 | BS CgF | C.gigas | eggs | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM, FCC3ATL, FCC3ATL_02 | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
77 | 71 | BS CgLarv T1D3 | C.gigas | larvae | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
78 | 72 | BS CgLarv T1D5 | C.gigas | larvae | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
79 | 73 | BS CgLarv T3D3 | C.gigas | larvae | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
80 | 74 | BS CgLarv T3D5 | C.gigas | larvae | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
81 | 75 | BS CgM1 | C.gigas | sperm | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
82 | 76 | BS CgM3 | C.gigas | sperm | gDNA | N/A | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 72bp PE | samwhite_108168 | FCD2CA8, FCC39EM | 8/26/2013 | 9/24/2013 | ||||||||||||||||||||||||||||||||||||||||||
83 | 77 | Y38-control | C.gigas | gDNA | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 36bp PE | samwhite_108656 | FCC39KL,FCC25MD | 9/9/2013 | |||||||||||||||||||||||||||||||||||||||||||||
84 | 78 | Y54-mix | C.gigas | gDNA | Submitted to HTGU for library prep, bisulfite conversion | Illumina, Whole Methylome, 36bp PE | samwhite_108656 | FCC39KL,FCC25MD | 9/9/2013 | |||||||||||||||||||||||||||||||||||||||||||||
85 | 79 | V_CF26 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R2.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
86 | 80 | V_CF34 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10008_H94MGADXX_V_CF34_CGATGT_R1.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
87 | 81 | V_CF71 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10007_H94MGADXX_V_CF71_ATCACG_R2.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
88 | 82 | HK_CF2 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10010_H94MGADXX_HK_CF2_TGACCA_R2.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
89 | 83 | HK_CF35 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R1.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
90 | 84 | HK_CF70 | Pycnopodia | coelomycetes | total RNA | Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease | Submitted to Cornell for sequencing | Illumina, 100bp PE | 10315714 | 3291_5903_10012_H94MGADXX_HK_CF70_GCCAAT_R1.fastq.gz | 5/14/2014 | 5/28/2014 | SRP051104 | 7/16/2015 | ||||||||||||||||||||||||||||||||||||||||
91 | 85 | OlyRAD-01 | O. lurida | larvae | gDNA (RAD) | Sumbitted to University of Oregon for sequencing | Illumina, 100bp SE | 2035 | 11/17/2014 | 12/2/2014 | ||||||||||||||||||||||||||||||||||||||||||||
92 | 86 | 2M | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 28854396 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
93 | 87 | 4M | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 23895224 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
94 | 88 | 6M | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 23863125 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
95 | 89 | 2M HS | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 22814726 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
96 | 90 | 4M HS | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 18787858 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
97 | 91 | 6M HS | C.gigas | total RNA | pre and post heat shock | Submitted to Genewiz for sequencing | Illumina HiSeq2500, 100bp SE | 16.7 | JG1411211_R1 | 11/24/2014 | 12/15/2014 | 18964588 | SRP072251 | 3/23/2016 | ||||||||||||||||||||||||||||||||||||||||
98 | 92 | 2112_ACAGTG | C.virginica | gill | gDNA | NB3 No oil | Sumbitted to University of Oregon for sequencing | Illumina, 100bp SE | 2112 | 12/22/2014 | 2/10/2015 | |||||||||||||||||||||||||||||||||||||||||||
99 | 93 | 2112_GCCAAT | C.virginica | gill | gDNA | NB6 No oil | Sumbitted to University of Oregon for sequencing | Illumina, 100bp SE | 2112 | 12/22/2014 | 2/10/2015 | |||||||||||||||||||||||||||||||||||||||||||
100 | 94 | 2112_CAGATC | C.virginica | gill | gDNA | NB11 No oil | Sumbitted to University of Oregon for sequencing | Illumina, 100bp SE | 2112 | 12/22/2014 | 2/10/2015 |
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