#!/bin/bash

#$ -cwd
#$ -S /bin/bash
#$ -o ./output
#$ -e ./output
#$ -l mfree=3G
#$ -pe serial 16
#$ -R y

# Send email when job starts, ends or runs into an error
#$ -m beas
#$ -M emmats@uw.edu

#cause a failing process to trigger a job failure to make errors easier to catch
set -eo pipefail

#Initialize and load modules
. /etc/profile.d/modules.sh
module purge
module load modules{,-{init,gs/prod}} ngless/0.10.0

#Script
ngless \
   /net/nunn/vol1/emmats/sequencing/geo_metaG/ngl.singleLibs \
   --trace \
   --keep-temporary-files \
   -j $NSLOTS \
   -t /data/scratch/ssd